SMED30014033

Overview


Name	SMED30014033
Smed ID	SMED30014033
Length (bp)	5376

Neoblast Clusters

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.

Expression of SMED30014033 (SMED30014033) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30014033 (SMED30014033) in cells (dots) of each of the 12 neoblast clusters.

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30014033 (SMED30014033) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30014033 (SMED30014033) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30014033

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 4

Expressed In	Reference Transcript	Gene Models	Published Transcript	Transcriptome	Publication
nervous system	SMED30014033	h1SMcG0000280	dd_Smed_v4_69578_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
cephalic ganglia	SMED30014033	h1SMcG0000280	dd_Smed_v4_69578_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
reproductive organ	SMED30014033	h1SMcG0000280	Contig12382	uc_Smed_v2	PMID:28434803 Rouhana et al., 2017
reproductive organ	SMED30014033	h1SMcG0000280	Contig12382	newmark_ests	PMID:28434803 Rouhana et al., 2017

Note: Hover over icons to view figure legend

Homology

[Close]

BLAST of SMED30014033 vs. Planmine SMEST
Match: SMESG000065669.1 (SMESG000065669.1)

HSP 1 Score: 3294.21 bits (8540), Expect = 0.000e+0
Identity = 1699/1700 (99.94%), Postives = 1700/1700 (100.00%), Query Frame = 2

Query:  101 MKNLDLNSHDKYRLKKIKISIQIEKFRGFQRKFSNVFNNNAADSTEVFKPDSFFVIKYANYRFLKKQICISKDWNDNQEKYSYSYKTNSFVSKITNKTKRNLEKTTKIILXXXXXXXXXXXXXWRAKKEIQFKQFQVSNQPPNRFKNKPLQASMNFSNFHGTLQFNKKLEPLACEDSFKLLKSHFFPKIIPTTNKSAPKFKLTIKEIYRNSNKNKADNDFRSNQKTRMKNDQSQFPNLSSGSQLNERFQTDKSSPFRRHNNQNFPTILTFKPANSKTSNLELKNQNDKSIKDQENIIINPDGSVADKVAKIDXXXXXXXXXXXXXXXFVTKNETSYFVQNQDGKFGEHSSTDKNSFLQNNQDGKFVEYSSTDKNSFQQHSLADFQTFIKNKDGSFSEAILQDRSALAKQSENINPRXXXXXXXXXXXTYIKNDDETVSKVISTTIKKGDFTFENEYLGVPEATYVKNEDGIYRELNIKNKQDQFNLSEHSIEIVSGRNIKNSTQNEFEHKNNDGTFREINFEIKPKTYNSKTLVEGNLKGSTSTDLYTKDDRTLKEMNFENKSHQNGLINDATKEEINFDRLTLIDPVSENMDLSNPYILDATHQTSTYTNYSIDNKNRFDQNMKNRAPIYPFIKIEDVTFEDISFKNASVDNVNFIRKNMKSDSYFKNEDRTIKEINFEYKPDEFNSMNLNEGNVGSLVWSDGFVRKDDRTSREENFINKTNVYGAPIATYARSPSGTFTEVLSKNKHENFLKGTKILSEENTTDKGSHVTYIEKEDTKFSGILTPIKTAENYLLDNDNINKKNVENKTSVTENIKNEVGTVSKNVSMTKPAEKYLLDNENIIKKHLENKTHITEYIRNDDGIVLKNVSPTKSADNYLLHNENITKKPLENKTAITDNIINEDKKSFKNVSQTKPGENYILDNENISEENLEDTVSPFKYIENEDGTFSEMVFHGEQILDISLVNKNMVSENVKILSQVTEFVVKEKEEHSKVFQGLEESSSTAIENNDLNLIKVEYENLYXXXXXXXXXXXXXXXQKVQNPLSENEVLLFNFKATVDDANYTLYKKGEELTSSNFTNENIQLYKEIQESQSVQNANENQIFWTNTDKTTEKPIIVTGCLNDNTNIDNGNMTDTKLSKKRDLQQESLVKRISFTRYEHKSSGLNCQSSKNELENHQKETMLIPGQKIIKMNTKSEDQLVVKEAEKKLPYNDKNSDCVLKRLSIQYSDPKLSGNFRAPSNEGEYFGGENLRKNSFKENDADNQSTKAKMETQYQNASYIKKLMDSSHDTEQESQESKTLTGHSESTDLASFYGSGTHLFNPEHSPFTPLDNSKIQKFPILENSKETKTDYSTESNDYFIVNTRPSGYLTDKXXXXXXXXXXXLNGIKKDLYNIEKNSNDYLFTINSQGLESMKIKTVDIHFDTVITHSPKYETDNFDIDQIAFLDTFKSPNFEKILFDEKELEMKRTVLESLSVVRSIEPINVSLMQSLLPENALDMRPPDNPPDIIKTIESETIKSTNIPPNHHENIVQVIEKTKNILLTESPELSDFYDVDPCSDVSLSLIQMNQLTCQSNVNQNNKYLKKCSNEILVGTEPSDLQIVTKRKYIFPIETYKKLNNRFFTYKFIISLSTTISFHKMTLIKFPVNSVHKRKADFAKGQHKIYSNITKMLTSSHEHIIDRRKRGKLNHTRKESNLPGASQS 5200
            MKNLDLNSHDKYRLKKIKISIQIEKFRGFQRKFSNVFNNNAADSTEVFKPDSFFVIKYANYRFLKKQICISKDWNDNQEKYSYSYKTNSFVSKITNKTKRNLEKTTKIILNFKNKKQKSSNNSWRAKKEIQFKQFQVSNQPPNRFKNKPLQASMNFSNFHGTLQFNKKLEPLACEDSFKLLKSHFFPKIIPTTN+SAPKFKLTIKEIYRNSNKNKADNDFRSNQKTRMKNDQSQFPNLSSGSQLNERFQTDKSSPFRRHNNQNFPTILTFKPANSKTSNLELKNQNDKSIKDQENIIINPDGSVADKVAKIDVSLLKLENKLLENSVFVTKNETSYFVQNQDGKFGEHSSTDKNSFLQNNQDGKFVEYSSTDKNSFQQHSLADFQTFIKNKDGSFSEAILQDRSALAKQSENINPRVVSENVEENVVTYIKNDDETVSKVISTTIKKGDFTFENEYLGVPEATYVKNEDGIYRELNIKNKQDQFNLSEHSIEIVSGRNIKNSTQNEFEHKNNDGTFREINFEIKPKTYNSKTLVEGNLKGSTSTDLYTKDDRTLKEMNFENKSHQNGLINDATKEEINFDRLTLIDPVSENMDLSNPYILDATHQTSTYTNYSIDNKNRFDQNMKNRAPIYPFIKIEDVTFEDISFKNASVDNVNFIRKNMKSDSYFKNEDRTIKEINFEYKPDEFNSMNLNEGNVGSLVWSDGFVRKDDRTSREENFINKTNVYGAPIATYARSPSGTFTEVLSKNKHENFLKGTKILSEENTTDKGSHVTYIEKEDTKFSGILTPIKTAENYLLDNDNINKKNVENKTSVTENIKNEVGTVSKNVSMTKPAEKYLLDNENIIKKHLENKTHITEYIRNDDGIVLKNVSPTKSADNYLLHNENITKKPLENKTAITDNIINEDKKSFKNVSQTKPGENYILDNENISEENLEDTVSPFKYIENEDGTFSEMVFHGEQILDISLVNKNMVSENVKILSQVTEFVVKEKEEHSKVFQGLEESSSTAIENNDLNLIKVEYENLYESSEESDILEIISSIQKVQNPLSENEVLLFNFKATVDDANYTLYKKGEELTSSNFTNENIQLYKEIQESQSVQNANENQIFWTNTDKTTEKPIIVTGCLNDNTNIDNGNMTDTKLSKKRDLQQESLVKRISFTRYEHKSSGLNCQSSKNELENHQKETMLIPGQKIIKMNTKSEDQLVVKEAEKKLPYNDKNSDCVLKRLSIQYSDPKLSGNFRAPSNEGEYFGGENLRKNSFKENDADNQSTKAKMETQYQNASYIKKLMDSSHDTEQESQESKTLTGHSESTDLASFYGSGTHLFNPEHSPFTPLDNSKIQKFPILENSKETKTDYSTESNDYFIVNTRPSGYLTDKSSSASFYGSGSLNGIKKDLYNIEKNSNDYLFTINSQGLESMKIKTVDIHFDTVITHSPKYETDNFDIDQIAFLDTFKSPNFEKILFDEKELEMKRTVLESLSVVRSIEPINVSLMQSLLPENALDMRPPDNPPDIIKTIESETIKSTNIPPNHHENIVQVIEKTKNILLTESPELSDFYDVDPCSDVSLSLIQMNQLTCQSNVNQNNKYLKKCSNEILVGTEPSDLQIVTKRKYIFPIETYKKLNNRFFTYKFIISLSTTISFHKMTLIKFPVNSVHKRKADFAKGQHKIYSNITKMLTSSHEHIIDRRKRGKLNHTRKESNLPGASQS
Sbjct:    1 MKNLDLNSHDKYRLKKIKISIQIEKFRGFQRKFSNVFNNNAADSTEVFKPDSFFVIKYANYRFLKKQICISKDWNDNQEKYSYSYKTNSFVSKITNKTKRNLEKTTKIILNFKNKKQKSSNNSWRAKKEIQFKQFQVSNQPPNRFKNKPLQASMNFSNFHGTLQFNKKLEPLACEDSFKLLKSHFFPKIIPTTNRSAPKFKLTIKEIYRNSNKNKADNDFRSNQKTRMKNDQSQFPNLSSGSQLNERFQTDKSSPFRRHNNQNFPTILTFKPANSKTSNLELKNQNDKSIKDQENIIINPDGSVADKVAKIDVSLLKLENKLLENSVFVTKNETSYFVQNQDGKFGEHSSTDKNSFLQNNQDGKFVEYSSTDKNSFQQHSLADFQTFIKNKDGSFSEAILQDRSALAKQSENINPRVVSENVEENVVTYIKNDDETVSKVISTTIKKGDFTFENEYLGVPEATYVKNEDGIYRELNIKNKQDQFNLSEHSIEIVSGRNIKNSTQNEFEHKNNDGTFREINFEIKPKTYNSKTLVEGNLKGSTSTDLYTKDDRTLKEMNFENKSHQNGLINDATKEEINFDRLTLIDPVSENMDLSNPYILDATHQTSTYTNYSIDNKNRFDQNMKNRAPIYPFIKIEDVTFEDISFKNASVDNVNFIRKNMKSDSYFKNEDRTIKEINFEYKPDEFNSMNLNEGNVGSLVWSDGFVRKDDRTSREENFINKTNVYGAPIATYARSPSGTFTEVLSKNKHENFLKGTKILSEENTTDKGSHVTYIEKEDTKFSGILTPIKTAENYLLDNDNINKKNVENKTSVTENIKNEVGTVSKNVSMTKPAEKYLLDNENIIKKHLENKTHITEYIRNDDGIVLKNVSPTKSADNYLLHNENITKKPLENKTAITDNIINEDKKSFKNVSQTKPGENYILDNENISEENLEDTVSPFKYIENEDGTFSEMVFHGEQILDISLVNKNMVSENVKILSQVTEFVVKEKEEHSKVFQGLEESSSTAIENNDLNLIKVEYENLYESSEESDILEIISSIQKVQNPLSENEVLLFNFKATVDDANYTLYKKGEELTSSNFTNENIQLYKEIQESQSVQNANENQIFWTNTDKTTEKPIIVTGCLNDNTNIDNGNMTDTKLSKKRDLQQESLVKRISFTRYEHKSSGLNCQSSKNELENHQKETMLIPGQKIIKMNTKSEDQLVVKEAEKKLPYNDKNSDCVLKRLSIQYSDPKLSGNFRAPSNEGEYFGGENLRKNSFKENDADNQSTKAKMETQYQNASYIKKLMDSSHDTEQESQESKTLTGHSESTDLASFYGSGTHLFNPEHSPFTPLDNSKIQKFPILENSKETKTDYSTESNDYFIVNTRPSGYLTDKSSSASFYGSGSLNGIKKDLYNIEKNSNDYLFTINSQGLESMKIKTVDIHFDTVITHSPKYETDNFDIDQIAFLDTFKSPNFEKILFDEKELEMKRTVLESLSVVRSIEPINVSLMQSLLPENALDMRPPDNPPDIIKTIESETIKSTNIPPNHHENIVQVIEKTKNILLTESPELSDFYDVDPCSDVSLSLIQMNQLTCQSNVNQNNKYLKKCSNEILVGTEPSDLQIVTKRKYIFPIETYKKLNNRFFTYKFIISLSTTISFHKMTLIKFPVNSVHKRKADFAKGQHKIYSNITKMLTSSHEHIIDRRKRGKLNHTRKESNLPGASQS 1700

[Close]

BLAST of SMED30014033 vs. Planmine SMEST
Match: SMESG000065669.1 (SMESG000065669.1)

HSP 1 Score: 3266.09 bits (8467), Expect = 0.000e+0
Identity = 1699/1748 (97.20%), Postives = 1700/1748 (97.25%), Query Frame = 2

Query:  101 MKNLDLNSHDKYRLKKIKISIQIEKFRGFQRKFSNVFNNNAADSTEVFKPDSFFVIKYANYRFLKKQICISKDWNDNQEKYSYSYKTNSFVSKITNKTKRNLEKTTKIILXXXXXXXXXXXXXWRAKKEIQFKQFQV-----SNQPPNRFKNKPLQASMNFSNFHGTLQFNKKLEPLACEDSFKLLKSHFFPKIIPTTNKSAPKFKLTIKEIYRNSNKNKADNDFRSNQKTRMKNDQSQFPNLSSGSQLNERFQTDKSSPFRRHNNQNFPTILTFKPANSKTSNLELKNQNDKSIKDQENIIINPDGSVADKVAKIDXXXXXXXXXXXXXXXFVTKNETSYFVQNQDGKFGEHSSTDKNSFLQNNQDGKFVEYSSTDKNSFQQHSLADFQTFIKNKDGSFSEAILQDRSALAKQSENINPRXXXXXXXXXXXTYIKNDDETVSKVISTTIKKGDFTFENEYLGVPEATYVKNEDGIYRELNIKNKQDQFNLSEHSIEIVSGRNIKNSTQNEFEHKNNDGTFREINFEIKPKTYNSKTLVEGNLKGSTSTDLYTKDDRTLKEMNFENKSHQNGLINDATKEEINFDRLTLIDPVSENMDLSNPYILDATHQTSTYTNYSIDNKNRFDQNMKNRAPIYPFIKIEDVTFEDISFKNASVDNVNFIRKNMKSDSYFKNEDRTIKEINFEYKPDEFNSMNLNEGNVGSLVWSDGFVRKDDRTSREENFINKTNVYGAPIATYARSPSGTFTEVLSKNKHENFLKGTKILSEENTTDKGSHVTYIEKEDTKFSGILTPIKTAENYLLDNDNINKKNVENKTSVTENIKNEVGTVSKNVSMTKPAEKYLLDNENIIKKHLENKTHITEYIRNDDGIVLKNVSPTKSADNYLLHNENITKKPLENKTAITDNIINEDKKSFKNVSQTKPGENYILDNEN-------------------------------------------ISEENLEDTVSPFKYIENEDGTFSEMVFHGEQILDISLVNKNMVSENVKILSQVTEFVVKEKEEHSKVFQGLEESSSTAIENNDLNLIKVEYENLYXXXXXXXXXXXXXXXQKVQNPLSENEVLLFNFKATVDDANYTLYKKGEELTSSNFTNENIQLYKEIQESQSVQNANENQIFWTNTDKTTEKPIIVTGCLNDNTNIDNGNMTDTKLSKKRDLQQESLVKRISFTRYEHKSSGLNCQSSKNELENHQKETMLIPGQKIIKMNTKSEDQLVVKEAEKKLPYNDKNSDCVLKRLSIQYSDPKLSGNFRAPSNEGEYFGGENLRKNSFKENDADNQSTKAKMETQYQNASYIKKLMDSSHDTEQESQESKTLTGHSESTDLASFYGSGTHLFNPEHSPFTPLDNSKIQKFPILENSKETKTDYSTESNDYFIVNTRPSGYLTDKXXXXXXXXXXXLNGIKKDLYNIEKNSNDYLFTINSQGLESMKIKTVDIHFDTVITHSPKYETDNFDIDQIAFLDTFKSPNFEKILFDEKELEMKRTVLESLSVVRSIEPINVSLMQSLLPENALDMRPPDNPPDIIKTIESETIKSTNIPPNHHENIVQVIEKTKNILLTESPELSDFYDVDPCSDVSLSLIQMNQLTCQSNVNQNNKYLKKCSNEILVGTEPSDLQIVTKRKYIFPIETYKKLNNRFFTYKFIISLSTTISFHKMTLIKFPVNSVHKRKADFAKGQHKIYSNITKMLTSSHEHIIDRRKRGKLNHTRKESNLPGASQS 5200
            MKNLDLNSHDKYRLKKIKISIQIEKFRGFQRKFSNVFNNNAADSTEVFKPDSFFVIKYANYRFLKKQICISKDWNDNQEKYSYSYKTNSFVSKITNKTKRNLEKTTKIILNFKNKKQKSSNNSWRAKKEIQFKQFQV     SNQPPNRFKNKPLQASMNFSNFHGTLQFNKKLEPLACEDSFKLLKSHFFPKIIPTTN+SAPKFKLTIKEIYRNSNKNKADNDFRSNQKTRMKNDQSQFPNLSSGSQLNERFQTDKSSPFRRHNNQNFPTILTFKPANSKTSNLELKNQNDKSIKDQENIIINPDGSVADKVAKIDVSLLKLENKLLENSVFVTKNETSYFVQNQDGKFGEHSSTDKNSFLQNNQDGKFVEYSSTDKNSFQQHSLADFQTFIKNKDGSFSEAILQDRSALAKQSENINPRVVSENVEENVVTYIKNDDETVSKVISTTIKKGDFTFENEYLGVPEATYVKNEDGIYRELNIKNKQDQFNLSEHSIEIVSGRNIKNSTQNEFEHKNNDGTFREINFEIKPKTYNSKTLVEGNLKGSTSTDLYTKDDRTLKEMNFENKSHQNGLINDATKEEINFDRLTLIDPVSENMDLSNPYILDATHQTSTYTNYSIDNKNRFDQNMKNRAPIYPFIKIEDVTFEDISFKNASVDNVNFIRKNMKSDSYFKNEDRTIKEINFEYKPDEFNSMNLNEGNVGSLVWSDGFVRKDDRTSREENFINKTNVYGAPIATYARSPSGTFTEVLSKNKHENFLKGTKILSEENTTDKGSHVTYIEKEDTKFSGILTPIKTAENYLLDNDNINKKNVENKTSVTENIKNEVGTVSKNVSMTKPAEKYLLDNENIIKKHLENKTHITEYIRNDDGIVLKNVSPTKSADNYLLHNENITKKPLENKTAITDNIINEDKKSFKNVSQTKPGENYILDNEN                                           ISEENLEDTVSPFKYIENEDGTFSEMVFHGEQILDISLVNKNMVSENVKILSQVTEFVVKEKEEHSKVFQGLEESSSTAIENNDLNLIKVEYENLYESSEESDILEIISSIQKVQNPLSENEVLLFNFKATVDDANYTLYKKGEELTSSNFTNENIQLYKEIQESQSVQNANENQIFWTNTDKTTEKPIIVTGCLNDNTNIDNGNMTDTKLSKKRDLQQESLVKRISFTRYEHKSSGLNCQSSKNELENHQKETMLIPGQKIIKMNTKSEDQLVVKEAEKKLPYNDKNSDCVLKRLSIQYSDPKLSGNFRAPSNEGEYFGGENLRKNSFKENDADNQSTKAKMETQYQNASYIKKLMDSSHDTEQESQESKTLTGHSESTDLASFYGSGTHLFNPEHSPFTPLDNSKIQKFPILENSKETKTDYSTESNDYFIVNTRPSGYLTDKSSSASFYGSGSLNGIKKDLYNIEKNSNDYLFTINSQGLESMKIKTVDIHFDTVITHSPKYETDNFDIDQIAFLDTFKSPNFEKILFDEKELEMKRTVLESLSVVRSIEPINVSLMQSLLPENALDMRPPDNPPDIIKTIESETIKSTNIPPNHHENIVQVIEKTKNILLTESPELSDFYDVDPCSDVSLSLIQMNQLTCQSNVNQNNKYLKKCSNEILVGTEPSDLQIVTKRKYIFPIETYKKLNNRFFTYKFIISLSTTISFHKMTLIKFPVNSVHKRKADFAKGQHKIYSNITKMLTSSHEHIIDRRKRGKLNHTRKESNLPGASQS
Sbjct:    1 MKNLDLNSHDKYRLKKIKISIQIEKFRGFQRKFSNVFNNNAADSTEVFKPDSFFVIKYANYRFLKKQICISKDWNDNQEKYSYSYKTNSFVSKITNKTKRNLEKTTKIILNFKNKKQKSSNNSWRAKKEIQFKQFQVKKNLVSNQPPNRFKNKPLQASMNFSNFHGTLQFNKKLEPLACEDSFKLLKSHFFPKIIPTTNRSAPKFKLTIKEIYRNSNKNKADNDFRSNQKTRMKNDQSQFPNLSSGSQLNERFQTDKSSPFRRHNNQNFPTILTFKPANSKTSNLELKNQNDKSIKDQENIIINPDGSVADKVAKIDVSLLKLENKLLENSVFVTKNETSYFVQNQDGKFGEHSSTDKNSFLQNNQDGKFVEYSSTDKNSFQQHSLADFQTFIKNKDGSFSEAILQDRSALAKQSENINPRVVSENVEENVVTYIKNDDETVSKVISTTIKKGDFTFENEYLGVPEATYVKNEDGIYRELNIKNKQDQFNLSEHSIEIVSGRNIKNSTQNEFEHKNNDGTFREINFEIKPKTYNSKTLVEGNLKGSTSTDLYTKDDRTLKEMNFENKSHQNGLINDATKEEINFDRLTLIDPVSENMDLSNPYILDATHQTSTYTNYSIDNKNRFDQNMKNRAPIYPFIKIEDVTFEDISFKNASVDNVNFIRKNMKSDSYFKNEDRTIKEINFEYKPDEFNSMNLNEGNVGSLVWSDGFVRKDDRTSREENFINKTNVYGAPIATYARSPSGTFTEVLSKNKHENFLKGTKILSEENTTDKGSHVTYIEKEDTKFSGILTPIKTAENYLLDNDNINKKNVENKTSVTENIKNEVGTVSKNVSMTKPAEKYLLDNENIIKKHLENKTHITEYIRNDDGIVLKNVSPTKSADNYLLHNENITKKPLENKTAITDNIINEDKKSFKNVSQTKPGENYILDNENVSKKNLENKTPTVKYTKNEDGNSSKIHSTHKSNQILPSKKKENISEENLEDTVSPFKYIENEDGTFSEMVFHGEQILDISLVNKNMVSENVKILSQVTEFVVKEKEEHSKVFQGLEESSSTAIENNDLNLIKVEYENLYESSEESDILEIISSIQKVQNPLSENEVLLFNFKATVDDANYTLYKKGEELTSSNFTNENIQLYKEIQESQSVQNANENQIFWTNTDKTTEKPIIVTGCLNDNTNIDNGNMTDTKLSKKRDLQQESLVKRISFTRYEHKSSGLNCQSSKNELENHQKETMLIPGQKIIKMNTKSEDQLVVKEAEKKLPYNDKNSDCVLKRLSIQYSDPKLSGNFRAPSNEGEYFGGENLRKNSFKENDADNQSTKAKMETQYQNASYIKKLMDSSHDTEQESQESKTLTGHSESTDLASFYGSGTHLFNPEHSPFTPLDNSKIQKFPILENSKETKTDYSTESNDYFIVNTRPSGYLTDKSSSASFYGSGSLNGIKKDLYNIEKNSNDYLFTINSQGLESMKIKTVDIHFDTVITHSPKYETDNFDIDQIAFLDTFKSPNFEKILFDEKELEMKRTVLESLSVVRSIEPINVSLMQSLLPENALDMRPPDNPPDIIKTIESETIKSTNIPPNHHENIVQVIEKTKNILLTESPELSDFYDVDPCSDVSLSLIQMNQLTCQSNVNQNNKYLKKCSNEILVGTEPSDLQIVTKRKYIFPIETYKKLNNRFFTYKFIISLSTTISFHKMTLIKFPVNSVHKRKADFAKGQHKIYSNITKMLTSSHEHIIDRRKRGKLNHTRKESNLPGASQS 1748

[Close]

BLAST of SMED30014033 vs. Planmine SMEST
Match: SMESG000065669.1 (SMESG000065669.1)

HSP 1 Score: 3252.61 bits (8432), Expect = 0.000e+0
Identity = 1699/1778 (95.56%), Postives = 1700/1778 (95.61%), Query Frame = 2

Query:  101 MKNLDLNSHDKYRLKKIKISIQIEKFRGFQRKFSNVFNNNAADSTEVFKPDSFFVIKYANYRFLKKQICISKDWNDNQEKYSYSYKTNSFVSKITNKTKRNLEKTTKIILXXXXXXXXXXXXXWRAKKEIQFKQFQVSNQPPNRFKNKPLQASMNFSNFHGTLQFNKKLEPLACEDSFKLLKSHFFPKIIPTTNKSAPKFKLTIKEIYRNSNKNKADNDFRSNQKTRMKNDQSQFPNLSSGSQLNERFQTDKSSPFRRHNNQNFPTILTFKPANSKTSNLELKNQNDKSIKDQENIIINPDGSVADKVAKIDXXXXXXXXXXXXXXXFVTKNETSYFVQNQDGKFGEHSSTDKNSFLQNNQDGKFVEYSSTDKNSFQQHSLADFQTFIKNKDGSFSEAILQDRSALAKQSENINPRXXXXXXXXXXXTYIKNDDETVSKVISTTIKKGDFTFENEYLGVPEATYVKNEDGIYRELNIKNKQDQFNLSEHSIEIVSGRNIKNSTQNEFEHKNNDGTFREINFEIKPKTYNSKTLVEGNLKGSTSTDLYTKDDRTLKEMNFENKSHQNGLINDATKEEINFDRLTLIDPVSENMDLSNPYILDATHQTSTYTNYSIDNKNRFDQNMKNRAPIYPFIKIEDVTFEDISFKNASVDNVNFIRKNMKSDSYFKNEDRTIKEINFEYKPDEFNSMNLNEGNVGSLVWSDGFVRKDDRTSRE-----------------------------------ENFINKTNVYGAPIATYARSPSGTFTEVLSKNKHENFLKGTKILSEENTTDKGSHVTYIEKEDTKFSGILTPIKTAENYLLDNDNINKKNVENKTSVTENIKNEVGTVSKNVSMTKPAEKYLLDNENIIKKHLENKTHITEYIRNDDGIVLKNVSPTKSADNYLLHNENITKKPLENKTAITDNIINEDKKSFKNVSQTKPGENYILDNEN-------------------------------------------ISEENLEDTVSPFKYIENEDGTFSEMVFHGEQILDISLVNKNMVSENVKILSQVTEFVVKEKEEHSKVFQGLEESSSTAIENNDLNLIKVEYENLYXXXXXXXXXXXXXXXQKVQNPLSENEVLLFNFKATVDDANYTLYKKGEELTSSNFTNENIQLYKEIQESQSVQNANENQIFWTNTDKTTEKPIIVTGCLNDNTNIDNGNMTDTKLSKKRDLQQESLVKRISFTRYEHKSSGLNCQSSKNELENHQKETMLIPGQKIIKMNTKSEDQLVVKEAEKKLPYNDKNSDCVLKRLSIQYSDPKLSGNFRAPSNEGEYFGGENLRKNSFKENDADNQSTKAKMETQYQNASYIKKLMDSSHDTEQESQESKTLTGHSESTDLASFYGSGTHLFNPEHSPFTPLDNSKIQKFPILENSKETKTDYSTESNDYFIVNTRPSGYLTDKXXXXXXXXXXXLNGIKKDLYNIEKNSNDYLFTINSQGLESMKIKTVDIHFDTVITHSPKYETDNFDIDQIAFLDTFKSPNFEKILFDEKELEMKRTVLESLSVVRSIEPINVSLMQSLLPENALDMRPPDNPPDIIKTIESETIKSTNIPPNHHENIVQVIEKTKNILLTESPELSDFYDVDPCSDVSLSLIQMNQLTCQSNVNQNNKYLKKCSNEILVGTEPSDLQIVTKRKYIFPIETYKKLNNRFFTYKFIISLSTTISFHKMTLIKFPVNSVHKRKADFAKGQHKIYSNITKMLTSSHEHIIDRRKRGKLNHTRKESNLPGASQS 5200
            MKNLDLNSHDKYRLKKIKISIQIEKFRGFQRKFSNVFNNNAADSTEVFKPDSFFVIKYANYRFLKKQICISKDWNDNQEKYSYSYKTNSFVSKITNKTKRNLEKTTKIILNFKNKKQKSSNNSWRAKKEIQFKQFQVSNQPPNRFKNKPLQASMNFSNFHGTLQFNKKLEPLACEDSFKLLKSHFFPKIIPTTN+SAPKFKLTIKEIYRNSNKNKADNDFRSNQKTRMKNDQSQFPNLSSGSQLNERFQTDKSSPFRRHNNQNFPTILTFKPANSKTSNLELKNQNDKSIKDQENIIINPDGSVADKVAKIDVSLLKLENKLLENSVFVTKNETSYFVQNQDGKFGEHSSTDKNSFLQNNQDGKFVEYSSTDKNSFQQHSLADFQTFIKNKDGSFSEAILQDRSALAKQSENINPRVVSENVEENVVTYIKNDDETVSKVISTTIKKGDFTFENEYLGVPEATYVKNEDGIYRELNIKNKQDQFNLSEHSIEIVSGRNIKNSTQNEFEHKNNDGTFREINFEIKPKTYNSKTLVEGNLKGSTSTDLYTKDDRTLKEMNFENKSHQNGLINDATKEEINFDRLTLIDPVSENMDLSNPYILDATHQTSTYTNYSIDNKNRFDQNMKNRAPIYPFIKIEDVTFEDISFKNASVDNVNFIRKNMKSDSYFKNEDRTIKEINFEYKPDEFNSMNLNEGNVGSLVWSDGFVRKDDRTSRE                                   ENFINKTNVYGAPIATYARSPSGTFTEVLSKNKHENFLKGTKILSEENTTDKGSHVTYIEKEDTKFSGILTPIKTAENYLLDNDNINKKNVENKTSVTENIKNEVGTVSKNVSMTKPAEKYLLDNENIIKKHLENKTHITEYIRNDDGIVLKNVSPTKSADNYLLHNENITKKPLENKTAITDNIINEDKKSFKNVSQTKPGENYILDNEN                                           ISEENLEDTVSPFKYIENEDGTFSEMVFHGEQILDISLVNKNMVSENVKILSQVTEFVVKEKEEHSKVFQGLEESSSTAIENNDLNLIKVEYENLYESSEESDILEIISSIQKVQNPLSENEVLLFNFKATVDDANYTLYKKGEELTSSNFTNENIQLYKEIQESQSVQNANENQIFWTNTDKTTEKPIIVTGCLNDNTNIDNGNMTDTKLSKKRDLQQESLVKRISFTRYEHKSSGLNCQSSKNELENHQKETMLIPGQKIIKMNTKSEDQLVVKEAEKKLPYNDKNSDCVLKRLSIQYSDPKLSGNFRAPSNEGEYFGGENLRKNSFKENDADNQSTKAKMETQYQNASYIKKLMDSSHDTEQESQESKTLTGHSESTDLASFYGSGTHLFNPEHSPFTPLDNSKIQKFPILENSKETKTDYSTESNDYFIVNTRPSGYLTDKSSSASFYGSGSLNGIKKDLYNIEKNSNDYLFTINSQGLESMKIKTVDIHFDTVITHSPKYETDNFDIDQIAFLDTFKSPNFEKILFDEKELEMKRTVLESLSVVRSIEPINVSLMQSLLPENALDMRPPDNPPDIIKTIESETIKSTNIPPNHHENIVQVIEKTKNILLTESPELSDFYDVDPCSDVSLSLIQMNQLTCQSNVNQNNKYLKKCSNEILVGTEPSDLQIVTKRKYIFPIETYKKLNNRFFTYKFIISLSTTISFHKMTLIKFPVNSVHKRKADFAKGQHKIYSNITKMLTSSHEHIIDRRKRGKLNHTRKESNLPGASQS
Sbjct:    1 MKNLDLNSHDKYRLKKIKISIQIEKFRGFQRKFSNVFNNNAADSTEVFKPDSFFVIKYANYRFLKKQICISKDWNDNQEKYSYSYKTNSFVSKITNKTKRNLEKTTKIILNFKNKKQKSSNNSWRAKKEIQFKQFQVSNQPPNRFKNKPLQASMNFSNFHGTLQFNKKLEPLACEDSFKLLKSHFFPKIIPTTNRSAPKFKLTIKEIYRNSNKNKADNDFRSNQKTRMKNDQSQFPNLSSGSQLNERFQTDKSSPFRRHNNQNFPTILTFKPANSKTSNLELKNQNDKSIKDQENIIINPDGSVADKVAKIDVSLLKLENKLLENSVFVTKNETSYFVQNQDGKFGEHSSTDKNSFLQNNQDGKFVEYSSTDKNSFQQHSLADFQTFIKNKDGSFSEAILQDRSALAKQSENINPRVVSENVEENVVTYIKNDDETVSKVISTTIKKGDFTFENEYLGVPEATYVKNEDGIYRELNIKNKQDQFNLSEHSIEIVSGRNIKNSTQNEFEHKNNDGTFREINFEIKPKTYNSKTLVEGNLKGSTSTDLYTKDDRTLKEMNFENKSHQNGLINDATKEEINFDRLTLIDPVSENMDLSNPYILDATHQTSTYTNYSIDNKNRFDQNMKNRAPIYPFIKIEDVTFEDISFKNASVDNVNFIRKNMKSDSYFKNEDRTIKEINFEYKPDEFNSMNLNEGNVGSLVWSDGFVRKDDRTSREQIIAPENVKNKTYVKYDDGTFSEINSENGPNKHELENFINKTNVYGAPIATYARSPSGTFTEVLSKNKHENFLKGTKILSEENTTDKGSHVTYIEKEDTKFSGILTPIKTAENYLLDNDNINKKNVENKTSVTENIKNEVGTVSKNVSMTKPAEKYLLDNENIIKKHLENKTHITEYIRNDDGIVLKNVSPTKSADNYLLHNENITKKPLENKTAITDNIINEDKKSFKNVSQTKPGENYILDNENVSKKNLENKTPTVKYTKNEDGNSSKIHSTHKSNQILPSKKKENISEENLEDTVSPFKYIENEDGTFSEMVFHGEQILDISLVNKNMVSENVKILSQVTEFVVKEKEEHSKVFQGLEESSSTAIENNDLNLIKVEYENLYESSEESDILEIISSIQKVQNPLSENEVLLFNFKATVDDANYTLYKKGEELTSSNFTNENIQLYKEIQESQSVQNANENQIFWTNTDKTTEKPIIVTGCLNDNTNIDNGNMTDTKLSKKRDLQQESLVKRISFTRYEHKSSGLNCQSSKNELENHQKETMLIPGQKIIKMNTKSEDQLVVKEAEKKLPYNDKNSDCVLKRLSIQYSDPKLSGNFRAPSNEGEYFGGENLRKNSFKENDADNQSTKAKMETQYQNASYIKKLMDSSHDTEQESQESKTLTGHSESTDLASFYGSGTHLFNPEHSPFTPLDNSKIQKFPILENSKETKTDYSTESNDYFIVNTRPSGYLTDKSSSASFYGSGSLNGIKKDLYNIEKNSNDYLFTINSQGLESMKIKTVDIHFDTVITHSPKYETDNFDIDQIAFLDTFKSPNFEKILFDEKELEMKRTVLESLSVVRSIEPINVSLMQSLLPENALDMRPPDNPPDIIKTIESETIKSTNIPPNHHENIVQVIEKTKNILLTESPELSDFYDVDPCSDVSLSLIQMNQLTCQSNVNQNNKYLKKCSNEILVGTEPSDLQIVTKRKYIFPIETYKKLNNRFFTYKFIISLSTTISFHKMTLIKFPVNSVHKRKADFAKGQHKIYSNITKMLTSSHEHIIDRRKRGKLNHTRKESNLPGASQS 1778

[Close]

BLAST of SMED30014033 vs. Planmine SMEST
Match: SMESG000065669.1 (SMESG000065669.1)

HSP 1 Score: 3232.58 bits (8380), Expect = 0.000e+0
Identity = 1684/1743 (96.62%), Postives = 1685/1743 (96.67%), Query Frame = 2

Query:  101 MKNLDLNSHDKYRLKKIKISIQIEKFRGFQRKFSNVFNNNAADSTEVFKPDSFFVIKYANYRFLKKQICISKDWNDNQEKYSYSYKTNSFVSKITNKTKRNLEKTTKIILXXXXXXXXXXXXXWRAKKEIQFKQFQVSNQPPNRFKNKPLQASMNFSNFHGTLQFNKKLEPLACEDSFKLLKSHFFPKIIPTTNKSAPKFKLTIKEIYRNSNKNKADNDFRSNQKTRMKNDQSQFPNLSSGSQLNERFQTDKSSPFRRHNNQNFPTILTFKPANSKTSNLELKNQNDKSIKDQENIIINPDGSVADKVAKIDXXXXXXXXXXXXXXXFVTKNETSYFVQNQDGKFGEHSSTDKNSFLQNNQDGKFVEYSSTDKNSFQQHSLADFQTFIKNKDGSFSEAILQDRSALAKQSENINPRXXXXXXXXXXXTYIKNDDETVSKVISTTIKKGDFTFENEYLGVPEATYVKNEDGIYRELNIKNKQDQFNLSEHSIEIVSGRNIKNSTQNEFEHKNNDGTFREINFEIKPKTYNSKTLVEGNLKGSTSTDLYTKDDRTLKEMNFENKSHQNGLINDATKEEINFDRLTLIDPVSENMDLSNPYILDATHQTSTYTNYSIDNKNRFDQNMKNRAPIYPFIKIEDVTFEDISFKNASVDNVNFIRKNMKSDSYFKNEDRTIKEINFEYKPDEFNSMNLNEGNVGSLVWSDGFVRKDDRTSREENFINKTNVYGAPIATYARSPSGTFTEVLSKNKHENFLKGTKILSEENTTDKGSHVTYIEKEDTKFSGILTPIKTAENYLLDNDNINKKNVENKTSVTENIKNEVGTVSKNVSMTKPAEKYLLDNENIIKKHLENKTHITEYIRNDDGIVLKNVSPTKSADNYLLHNENITKKPLENKTAITDNIINEDKKSFKNVSQTKPGENYILDNEN-------------------------------------------ISEENLEDTVSPFKYIENEDGTFSEMVFHGEQILDISLVNKNMVSENVKILSQVTEFVVKEKEEHSKVFQGLEESSSTAIENNDLNLIKVEYENLYXXXXXXXXXXXXXXXQKVQNPLSENEVLLFNFKATVDDANYTLYKKGEELTSSNFTNENIQLYKEIQESQSVQNANENQIFWTNTDKTTEKPIIVTGCLNDNTNIDNGNMTDTKLSKKRDLQQESLVKRISFTRYEHKSSGLNCQSSKNELENHQKETMLIPGQKIIKMNTKSEDQLVVKEAEKKLPYNDKNSDCVLKRLSIQYSDPKLSGNFRAPSNEGEYFGGENLRKNSFKENDADNQSTKAKMETQYQNASYIKKLMDSSHDTEQESQESKTLTGHSESTDLASFYGSGTHLFNPEHSPFTPLDNSKIQKFPILENSKETKTDYSTESNDYFIVNTRPSGYLTDKXXXXXXXXXXXLNGIKKDLYNIEKNSNDYLFTINSQGLESMKIKTVDIHFDTVITHSPKYETDNFDIDQIAFLDTFKSPNFEKILFDEKELEMKRTVLESLSVVRSIEPINVSLMQSLLPENALDMRPPDNPPDIIKTIESETIKSTNIPPNHHENIVQVIEKTKNILLTESPELSDFYDVDPCSDVSLSLIQMNQLTCQSNVNQNNKYLKKCSNEILVGTEPSDLQIVTKRKYIFPIETYKKLNNRFFTYKFIISLSTTISFHKMTLIKFPVNSVHKRKADFAKGQHKIYSNITKMLTSSHEHIIDRRKRGKLNHTRKESNLPGASQS 5200
            MKNLDLNSHDKYRLKKIKISIQIEKFRGFQRKFSNVFNNNAADSTEVFKPDSFFVIKYANYRFLKKQICISKDWNDNQEKYSYSYKTNSFVSKITNKTKRNLEKTTKIILNFKNKKQKSSNNSWRAKKEIQFKQFQVSNQPPNRFKNKPLQASMNFSNFHGTLQFNKKLEPLACEDSFKLLKSHFFPKIIPTTN+SAPKFKLTIKEIYRNSNKNKADNDFRSNQKTRMKNDQSQFPNLSSGSQLNERFQTDKSSPFRRHNNQNFPTILTFKPANSKTSNLELKNQNDKSIKDQENIIINPDGSVADKVAKIDVSLLKLENKLLENSVFVTKNETSYFVQNQDGKFGEHSSTDKNSFLQNNQDGKFVEYSSTDKNSFQQHSLADFQTFIKNKDGSFSEAILQDRSALAKQSENINPRVVSENVEENVVTYIKNDDETVSKVISTTIKKGDFTFENEYLGVPEATYVKNEDGIYRELNIKNKQDQFNLSEHSIEIVSGRNIKNSTQNEFEHKNNDGTFREINFEIKPKTYNSKTLVEGNLKGSTSTDLYTKDDRTLKEMNFENKSHQNGLINDATKEEINFDRLTLIDPVSENMDLSNPYILDATHQTSTYTNYSIDNKNRFDQNMKNRAPIYPFIKIEDVTFEDISFKNASVDNVNFIRKNMKSDSYFKNEDRTIKEINFEYKPDEFNSMNLNEGNVGSLVWSDGFVRKDDRTSREENFINKTNVYGAPIATYARSPSGTFTEVLSKNKHENFLKGTKILSEENTTDKGSHVTYIEKEDTKFSGILTPIKTAENYLLDNDNINKKNVENKTSVTENIKNEVGTVSKNVSMTKPAEKYLLDNENIIKKHLENKTHITEYIRNDDGIVLKNVSPTKSADNYLLHNENITKKPLENKTAITDNIINEDKKSFKNVSQTKPGENYILDNEN                                           ISEENLEDTVSPFKYIENEDGTFSEMVFHGEQILDISLVNKNMVSENVKILSQVTEFVVKEKEEHSKVFQGLEESSSTAIENNDLNLIKVEYENLYESSEESDILEIISSIQKVQNPLSENEVLLFNFKATVDDANYTLYKKGEELTSSNFTNENIQLYKEIQESQSVQNANENQIFWTNTDKTTEKPIIVTGCLNDNTNIDNGNMTDTKLSKKRDLQQESLVKRISFTRYEHKSSGLNCQSSKNELENHQKETMLIPGQKIIKMNTKSEDQLVVKEAEKKLPYNDKNSDCVLKRLSIQYSDPKLSGNFRAPSNEGEYFGGENLRKNSFKENDADNQSTKAKMETQYQNASYIKKLMDSSHDTEQESQESKTLTGHSESTDLASFYGSGTHLFNPEHSPFTPLD               TKTDYSTESNDYFIVNTRPSGYLTDKSSSASFYGSGSLNGIKKDLYNIEKNSNDYLFTINSQGLESMKIKTVDIHFDTVITHSPKYETDNFDIDQIAFLDTFKSPNFEKILFDEKELEMKRTVLESLSVVRSIEPINVSLMQSLLPENALDMRPPDNPPDIIKTIESETIKSTNIPPNHHENIVQVIEKTKNILLTESPELSDFYDVDPCSDVSLSLIQMNQLTCQSNVNQNNKYLKKCSNEILVGTEPSDLQIVTKRKYIFPIETYKKLNNRFFTYKFIISLSTTISFHKMTLIKFPVNSVHKRKADFAKGQHKIYSNITKMLTSSHEHIIDRRKRGKLNHTRKESNLPGASQS
Sbjct:    1 MKNLDLNSHDKYRLKKIKISIQIEKFRGFQRKFSNVFNNNAADSTEVFKPDSFFVIKYANYRFLKKQICISKDWNDNQEKYSYSYKTNSFVSKITNKTKRNLEKTTKIILNFKNKKQKSSNNSWRAKKEIQFKQFQVSNQPPNRFKNKPLQASMNFSNFHGTLQFNKKLEPLACEDSFKLLKSHFFPKIIPTTNRSAPKFKLTIKEIYRNSNKNKADNDFRSNQKTRMKNDQSQFPNLSSGSQLNERFQTDKSSPFRRHNNQNFPTILTFKPANSKTSNLELKNQNDKSIKDQENIIINPDGSVADKVAKIDVSLLKLENKLLENSVFVTKNETSYFVQNQDGKFGEHSSTDKNSFLQNNQDGKFVEYSSTDKNSFQQHSLADFQTFIKNKDGSFSEAILQDRSALAKQSENINPRVVSENVEENVVTYIKNDDETVSKVISTTIKKGDFTFENEYLGVPEATYVKNEDGIYRELNIKNKQDQFNLSEHSIEIVSGRNIKNSTQNEFEHKNNDGTFREINFEIKPKTYNSKTLVEGNLKGSTSTDLYTKDDRTLKEMNFENKSHQNGLINDATKEEINFDRLTLIDPVSENMDLSNPYILDATHQTSTYTNYSIDNKNRFDQNMKNRAPIYPFIKIEDVTFEDISFKNASVDNVNFIRKNMKSDSYFKNEDRTIKEINFEYKPDEFNSMNLNEGNVGSLVWSDGFVRKDDRTSREENFINKTNVYGAPIATYARSPSGTFTEVLSKNKHENFLKGTKILSEENTTDKGSHVTYIEKEDTKFSGILTPIKTAENYLLDNDNINKKNVENKTSVTENIKNEVGTVSKNVSMTKPAEKYLLDNENIIKKHLENKTHITEYIRNDDGIVLKNVSPTKSADNYLLHNENITKKPLENKTAITDNIINEDKKSFKNVSQTKPGENYILDNENVSKKNLENKTPTVKYTKNEDGNSSKIHSTHKSNQILPSKKKENISEENLEDTVSPFKYIENEDGTFSEMVFHGEQILDISLVNKNMVSENVKILSQVTEFVVKEKEEHSKVFQGLEESSSTAIENNDLNLIKVEYENLYESSEESDILEIISSIQKVQNPLSENEVLLFNFKATVDDANYTLYKKGEELTSSNFTNENIQLYKEIQESQSVQNANENQIFWTNTDKTTEKPIIVTGCLNDNTNIDNGNMTDTKLSKKRDLQQESLVKRISFTRYEHKSSGLNCQSSKNELENHQKETMLIPGQKIIKMNTKSEDQLVVKEAEKKLPYNDKNSDCVLKRLSIQYSDPKLSGNFRAPSNEGEYFGGENLRKNSFKENDADNQSTKAKMETQYQNASYIKKLMDSSHDTEQESQESKTLTGHSESTDLASFYGSGTHLFNPEHSPFTPLD---------------TKTDYSTESNDYFIVNTRPSGYLTDKSSSASFYGSGSLNGIKKDLYNIEKNSNDYLFTINSQGLESMKIKTVDIHFDTVITHSPKYETDNFDIDQIAFLDTFKSPNFEKILFDEKELEMKRTVLESLSVVRSIEPINVSLMQSLLPENALDMRPPDNPPDIIKTIESETIKSTNIPPNHHENIVQVIEKTKNILLTESPELSDFYDVDPCSDVSLSLIQMNQLTCQSNVNQNNKYLKKCSNEILVGTEPSDLQIVTKRKYIFPIETYKKLNNRFFTYKFIISLSTTISFHKMTLIKFPVNSVHKRKADFAKGQHKIYSNITKMLTSSHEHIIDRRKRGKLNHTRKESNLPGASQS 1728

[Close]

BLAST of SMED30014033 vs. Planmine SMEST
Match: SMESG000065669.1 (SMESG000065669.1)

HSP 1 Score: 3209.85 bits (8321), Expect = 0.000e+0
Identity = 1675/1743 (96.10%), Postives = 1678/1743 (96.27%), Query Frame = 2

Query:  101 MKNLDLNSHDKYRLKKIKISIQIEKFRGFQRKFSNVFNNNAADSTEVFKPDSFFVIKYANYRFLKKQICISKDWNDNQEKYSYSYKTNSFVSKITNKTKRNLEKTTKIILXXXXXXXXXXXXXWRAKKEIQFKQFQVSNQPPNRFKNKPLQASMNFSNFHGTLQFNKKLEPLACEDSFKLLKSHFFPKIIPTTNKSAPKFKLTIKEIYRNSNKNKADNDFRSNQKTRMKNDQSQFPNLSSGSQLNERFQTDKSSPFRRHNNQNFPTILTFKPANSKTSNLELKNQNDKSIKDQENIIINPDGSVADKVAKIDXXXXXXXXXXXXXXXFVTKNETSYFVQNQDGKFGEHSSTDKNSFLQNNQDGKFVEYSSTDKNSFQQHSLADFQTFIKNKDGSFSEAILQDRSALAKQSENINPRXXXXXXXXXXXTYIKNDDETVSKVISTTIKKGDFTFENEYLGVPEATYVKNEDGIYRELNIKNKQDQFNLSEHSIEIVSGRNIKNSTQNEFEHKNNDGTFREINFEIKPKTYNSKTLVEGNLKGSTSTDLYTKDDRTLKEMNFENKSHQNGLINDATKEEINFDRLTLIDPVSENMDLSNPYILDATHQTSTYTNYSIDNKNRFDQNMKNRAPIYPFIKIEDVTFEDISFKNASVDNVNFIRKNMKSDSYFKNEDRTIKEINFEYKPDEFNSMNLNEGNVGSLVWSDGFVRKDDRTSREENFINKTNVYGAPIATYARSPSGTFTEVLSKNKHENFLKGTKILSEENTTDKGSHVTYIEKEDTKFSGILTPIKTAENYLLDNDNINKKNVENKTSVTENIKNEVGTVSKNVSMTKPAEKYLLDNENIIKKHLENKTHITEYIRNDDGIVLKNVSPTKSADNYLLHNENITKKPLENKTAITDNIINEDKKSFKNVSQTKPGENYILDNEN-------------------------------------------ISEENLEDTVSPFKYIENEDGTFSEMVFHGEQILDISLVNKNMVSENVKILSQVTEFVVKEKEEHSKVFQGLEESSSTAIENNDLNLIKVEYENLYXXXXXXXXXXXXXXXQKVQNPLSENEVLLFNFKATVDDANYTLYKKGEELTSSNFTNENIQLYKEIQESQSVQNANENQIFWTNTDKTTEKPIIVTGCLNDNTNIDNGNMTDTKLSKKRDLQQESLVKRISFTRYEHKSSGLNCQSSKNELENHQKETMLIPGQKIIKMNTKSEDQLVVKEAEKKLPYNDKNSDCVLKRLSIQYSDPKLSGNFRAPSNEGEYFGGENLRKNSFKENDADNQSTKAKMETQYQNASYIKKLMDSSHDTEQESQESKTLTGHSESTDLASFYGSGTHLFNPEHSPFTPLDNSKIQKFPILENSKETKTDYSTESNDYFIVNTRPSGYLTDKXXXXXXXXXXXLNGIKKDLYNIEKNSNDYLFTINSQGLESMKIKTVDIHFDTVITHSPKYETDNFDIDQIAFLDTFKSPNFEKILFDEKELEMKRTVLESLSVVRSIEPINVSLMQSLLPENALDMRPPDNPPDIIKTIESETIKSTNIPPNHHENIVQVIEKTKNILLTESPELSDFYDVDPCSDVSLSLIQMNQLTCQSNVNQNNKYLKKCSNEILVGTEPSDLQIVTKRKYIFPIETYKKLNNRFFTYKFIISLSTTISFHKMTLIKFPVNSVHKRKADFAKGQHKIYSNITKMLTSSHEHIIDRRKRGKLNHTRKESNLPGASQS 5200
            MKNLDLNSHDKYRLKKIKISIQIEKFRGFQRKFSNVFNNNAADSTEVFKPDSFFVIKYANYRFLKKQICISKDWNDNQEKYSYSYKTNSFVSKITNKTKRNLEKTTKIILNFKNKKQKSSNNSWRAKKEIQFKQFQVSNQPPNRFKNKPLQASMNFSNFHGTLQFNKKLEPLACEDSFKLLKSHFFPKIIPTTN+SAPKFKLTIKEIYRNSNKNKADNDFRSNQKTRMKNDQSQFPNLSSGSQLNERFQTDKSSPFRRHNNQNFPTILTFKPANSKTSNLELKNQNDKSIKDQENIIINPDGSVADKVAKIDVSLLKLENKLLENSVFVTKNETSYFVQNQDGK                    F E+SSTDKNSF Q+SLADFQTFIKNKDGSFSEAILQDRSALAKQSENINPRVVSENVEENVVTYIKNDDETVSKVISTTIKKGDFTFENEYLGVPEATYVKNEDGIYRELNIKNKQDQFNLSEHSIEIVSGRNIKNSTQNEFEHKNNDGTFREINFEIKPKTYNSKTLVEGNLKGSTSTDLYTKDDRTLKEMNFENKSHQNGLINDATKEEINFDRLTLIDPVSENMDLSNPYILDATHQTSTYTNYSIDNKNRFDQNMKNRAPIYPFIKIEDVTFEDISFKNASVDNVNFIRKNMKSDSYFKNEDRTIKEINFEYKPDEFNSMNLNEGNVGSLVWSDGFVRKDDRTSREENFINKTNVYGAPIATYARSPSGTFTEVLSKNKHENFLKGTKILSEENTTDKGSHVTYIEKEDTKFSGILTPIKTAENYLLDNDNINKKNVENKTSVTENIKNEVGTVSKNVSMTKPAEKYLLDNENIIKKHLENKTHITEYIRNDDGIVLKNVSPTKSADNYLLHNENITKKPLENKTAITDNIINEDKKSFKNVSQTKPGENYILDNEN                                           ISEENLEDTVSPFKYIENEDGTFSEMVFHGEQILDISLVNKNMVSENVKILSQVTEFVVKEKEEHSKVFQGLEESSSTAIENNDLNLIKVEYENLYESSEESDILEIISSIQKVQNPLSENEVLLFNFKATVDDANYTLYKKGEELTSSNFTNENIQLYKEIQESQSVQNANENQIFWTNTDKTTEKPIIVTGCLNDNTNIDNGNMTDTKLSKKRDLQQESLVKRISFTRYEHKSSGLNCQSSKNELENHQKETMLIPGQKIIKMNTKSEDQLVVKEAEKKLPYNDKNSDCVLKRLSIQYSDPKLSGNFRAPSNEGEYFGGENLRKNSFKENDADNQSTKAKMETQYQNASYIKKLMDSSHDTEQESQESKTLTGHSESTDLASFYGSGTHLFNPEHSPFTPLDNSKIQKFPILENSKETKTDYSTESNDYFIVNTRPSGYLTDKSSSASFYGSGSLNGIKKDLYNIEKNSNDYLFTINSQGLESMKIKTVDIHFDTVITHSPKYETDNFDIDQIAFLDTFKSPNFEKILFDEKELEMKRTVLESLSVVRSIEPINVSLMQSLLPENALDMRPPDNPPDIIKTIESETIKSTNIPPNHHENIVQVIEKTKNILLTESPELSDFYDVDPCSDVSLSLIQMNQLTCQSNVNQNNKYLKKCSNEILVGTEPSDLQIVTKRKYIFPIETYKKLNNRFFTYKFIISLSTTISFHKMTLIKFPVNSVHKRKADFAKGQHKIYSNITKMLTSSHEHIIDRRKRGKLNHTRKESNLPGASQS
Sbjct:    1 MKNLDLNSHDKYRLKKIKISIQIEKFRGFQRKFSNVFNNNAADSTEVFKPDSFFVIKYANYRFLKKQICISKDWNDNQEKYSYSYKTNSFVSKITNKTKRNLEKTTKIILNFKNKKQKSSNNSWRAKKEIQFKQFQVSNQPPNRFKNKPLQASMNFSNFHGTLQFNKKLEPLACEDSFKLLKSHFFPKIIPTTNRSAPKFKLTIKEIYRNSNKNKADNDFRSNQKTRMKNDQSQFPNLSSGSQLNERFQTDKSSPFRRHNNQNFPTILTFKPANSKTSNLELKNQNDKSIKDQENIIINPDGSVADKVAKIDVSLLKLENKLLENSVFVTKNETSYFVQNQDGK--------------------FGEHSSTDKNSFLQNSLADFQTFIKNKDGSFSEAILQDRSALAKQSENINPRVVSENVEENVVTYIKNDDETVSKVISTTIKKGDFTFENEYLGVPEATYVKNEDGIYRELNIKNKQDQFNLSEHSIEIVSGRNIKNSTQNEFEHKNNDGTFREINFEIKPKTYNSKTLVEGNLKGSTSTDLYTKDDRTLKEMNFENKSHQNGLINDATKEEINFDRLTLIDPVSENMDLSNPYILDATHQTSTYTNYSIDNKNRFDQNMKNRAPIYPFIKIEDVTFEDISFKNASVDNVNFIRKNMKSDSYFKNEDRTIKEINFEYKPDEFNSMNLNEGNVGSLVWSDGFVRKDDRTSREENFINKTNVYGAPIATYARSPSGTFTEVLSKNKHENFLKGTKILSEENTTDKGSHVTYIEKEDTKFSGILTPIKTAENYLLDNDNINKKNVENKTSVTENIKNEVGTVSKNVSMTKPAEKYLLDNENIIKKHLENKTHITEYIRNDDGIVLKNVSPTKSADNYLLHNENITKKPLENKTAITDNIINEDKKSFKNVSQTKPGENYILDNENVSKKNLENKTPTVKYTKNEDGNSSKIHSTHKSNQILPSKKKENISEENLEDTVSPFKYIENEDGTFSEMVFHGEQILDISLVNKNMVSENVKILSQVTEFVVKEKEEHSKVFQGLEESSSTAIENNDLNLIKVEYENLYESSEESDILEIISSIQKVQNPLSENEVLLFNFKATVDDANYTLYKKGEELTSSNFTNENIQLYKEIQESQSVQNANENQIFWTNTDKTTEKPIIVTGCLNDNTNIDNGNMTDTKLSKKRDLQQESLVKRISFTRYEHKSSGLNCQSSKNELENHQKETMLIPGQKIIKMNTKSEDQLVVKEAEKKLPYNDKNSDCVLKRLSIQYSDPKLSGNFRAPSNEGEYFGGENLRKNSFKENDADNQSTKAKMETQYQNASYIKKLMDSSHDTEQESQESKTLTGHSESTDLASFYGSGTHLFNPEHSPFTPLDNSKIQKFPILENSKETKTDYSTESNDYFIVNTRPSGYLTDKSSSASFYGSGSLNGIKKDLYNIEKNSNDYLFTINSQGLESMKIKTVDIHFDTVITHSPKYETDNFDIDQIAFLDTFKSPNFEKILFDEKELEMKRTVLESLSVVRSIEPINVSLMQSLLPENALDMRPPDNPPDIIKTIESETIKSTNIPPNHHENIVQVIEKTKNILLTESPELSDFYDVDPCSDVSLSLIQMNQLTCQSNVNQNNKYLKKCSNEILVGTEPSDLQIVTKRKYIFPIETYKKLNNRFFTYKFIISLSTTISFHKMTLIKFPVNSVHKRKADFAKGQHKIYSNITKMLTSSHEHIIDRRKRGKLNHTRKESNLPGASQS 1723

The following BLAST results are available for this feature:

BLAST of SMED30014033 vs. Ensembl Human
BLAST of SMED30014033 vs. Ensembl Celegans
BLAST of SMED30014033 vs. Ensembl Fly
BLAST of SMED30014033 vs. Ensembl Zebrafish
BLAST of SMED30014033 vs. Ensembl Xenopus
BLAST of SMED30014033 vs. Ensembl Mouse
BLAST of SMED30014033 vs. UniProt/SwissProt
BLAST of SMED30014033 vs. TrEMBL
BLAST of SMED30014033 vs. Ensembl Cavefish
BLAST of SMED30014033 vs. Ensembl Sea Lamprey
BLAST of SMED30014033 vs. Ensembl Yeast
BLAST of SMED30014033 vs. Ensembl Nematostella
BLAST of SMED30014033 vs. Ensembl Medaka
BLAST of SMED30014033 vs. Planmine SMEST

BLAST of SMED30014033 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SMED30014033 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SMED30014033 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SMED30014033 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SMED30014033 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SMED30014033 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SMED30014033 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SMED30014033 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SMED30014033 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SMED30014033 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SMED30014033 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SMED30014033 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SMED30014033 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SMED30014033 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5


Match Name	E-value	Identity	Description
SMESG000065669.1	0.000e+0	99.94	SMESG000065669.1	[more]
SMESG000065669.1	0.000e+0	97.20	SMESG000065669.1	[more]
SMESG000065669.1	0.000e+0	95.56	SMESG000065669.1	[more]
SMESG000065669.1	0.000e+0	96.62	SMESG000065669.1	[more]
SMESG000065669.1	0.000e+0	96.10	SMESG000065669.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediteranean smed_20140614 Interproscan	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Sequences

The following sequences are available for this feature:

transcript sequence
protein sequence

transcript sequence

>SMED30014033 ID=SMED30014033|Name=SMED30014033|organism=Schmidtea mediterranea sexual|type=transcript|length=5376bp
CTCAAATAGAAATTAAAATGGAAAATAATAAAAATGGCAATTTATAAATT
ATTAAATCGGAAATAAAAAGAGGCCCAATAAAACAAAAAACAGTGGAAAA
ATGAAAAATCTCGATCTGAATTCTCATGATAAATACCGACTGAAGAAAAT
TAAAATTTCAATACAAATTGAAAAATTTCGGGGATTTCAAAGAAAGTTTT
CAAATGTTTTCAACAATAATGCCGCGGATTCAACAGAAGTCTTCAAACCG
GATTCATTTTTTGTTATTAAATACGCCAACTATAGGTTTTTAAAGAAACA
AATATGTATTTCCAAAGATTGGAATGATAATCAAGAAAAATATTCGTATT
CCTATAAAACTAATTCTTTTGTATCAAAAATTACAAATAAAACTAAACGC
AACTTAGAAAAAACTACAAAGATAATTTTGAATTTTAAAAATAAAAAACA
AAAGTCGAGCAATAACTCTTGGAGAGCAAAAAAAGAAATTCAATTCAAAC
AGTTTCAGGTATCAAACCAACCTCCAAATAGGTTCAAAAATAAGCCACTT
CAGGCTTCAATGAATTTCTCGAATTTTCACGGTACCCTCCAGTTCAATAA
AAAACTCGAGCCCTTAGCATGCGAAGATTCGTTTAAATTATTAAAGAGCC
ATTTTTTCCCCAAAATAATTCCCACAACTAACAAATCAGCTCCAAAATTC
AAATTAACTATCAAAGAAATCTACAGAAATTCTAACAAAAACAAAGCGGA
CAACGATTTTAGATCCAATCAAAAGACGAGAATGAAAAATGACCAATCTC
AGTTTCCCAATTTATCGAGTGGATCTCAGCTGAATGAAAGATTTCAAACT
GACAAATCTTCTCCATTTCGTAGGCATAATAATCAAAACTTCCCAACCAT
TTTGACTTTCAAACCAGCAAATTCGAAAACGTCCAATTTGGAACTAAAAA
ATCAAAATGACAAGTCTATTAAAGATCAGGAAAATATTATTATAAATCCT
GACGGAAGCGTAGCGGACAAAGTAGCGAAAATTGACGTATCACTTCTTAA
GCTTGAAAATAAACTATTAGAGAATTCAGTTTTTGTGACTAAAAATGAAA
CTTCCTACTTTGTTCAAAATCAAGATGGAAAATTTGGTGAACATTCTTCT
ACAGATAAAAATAGTTTTTTACAAAATAATCAAGATGGGAAATTTGTTGA
ATATTCTTCTACAGATAAAAATTCGTTCCAACAACATAGTTTGGCTGATT
TTCAGACATTCATAAAAAATAAAGACGGCTCCTTTTCAGAAGCGATTCTC
CAAGATAGGAGTGCTCTAGCTAAACAATCGGAAAACATAAATCCTCGAGT
CGTAAGTGAAAACGTCGAAGAAAACGTTGTAACATATATTAAAAATGATG
ACGAAACAGTTTCCAAAGTCATTTCGACTACCATAAAAAAAGGAGACTTT
ACTTTTGAAAATGAATATCTTGGAGTACCCGAAGCAACTTATGTTAAGAA
TGAAGATGGAATATACAGAGAATTGAATATAAAAAATAAGCAAGATCAAT
TTAATTTATCAGAACACTCAATAGAAATTGTTTCGGGTAGAAATATAAAG
AATTCAACGCAAAATGAATTTGAACATAAAAATAATGACGGAACATTCAG
AGAAATCAACTTTGAAATTAAGCCAAAAACGTATAATTCGAAAACCCTTG
TTGAAGGAAATCTAAAAGGATCAACGTCGACAGATTTGTACACAAAAGAT
GATAGAACATTGAAAGAGATGAATTTTGAAAATAAAAGTCATCAGAATGG
ACTGATAAATGATGCTACAAAAGAAGAAATTAATTTTGATCGACTCACTT
TGATCGATCCTGTTAGTGAAAACATGGACCTTTCGAATCCGTACATCCTA
GATGCCACTCATCAAACATCAACTTATACAAATTATTCCATAGACAACAA
AAACCGTTTTGACCAAAACATGAAAAATAGAGCACCGATTTATCCGTTCA
TCAAAATTGAGGATGTAACCTTTGAGGATATCAGCTTTAAAAATGCCTCA
GTTGATAACGTAAATTTTATTAGAAAAAACATGAAAAGTGATTCATACTT
TAAAAATGAAGATAGAACAATCAAAGAGATAAATTTCGAGTATAAACCAG
ATGAATTTAATTCGATGAATCTCAACGAGGGAAACGTGGGAAGCCTTGTA
TGGTCCGATGGATTCGTCAGAAAGGATGATAGGACATCTAGAGAGGAAAA
CTTTATCAATAAAACGAACGTATATGGAGCTCCAATAGCCACCTACGCCA
GAAGTCCAAGTGGAACCTTTACTGAAGTCCTTTCTAAAAATAAGCATGAA
AATTTCTTGAAGGGAACTAAAATCCTAAGCGAAGAAAACACAACGGATAA
AGGATCTCATGTGACATACATAGAAAAAGAGGATACAAAATTTTCAGGAA
TCCTTACACCGATCAAAACAGCTGAAAATTATTTATTAGACAATGACAAT
ATTAACAAGAAAAATGTAGAGAATAAAACATCAGTAACTGAAAATATCAA
AAATGAAGTTGGGACAGTTTCCAAAAACGTTTCTATGACGAAACCAGCAG
AAAAATATTTATTAGACAATGAAAATATTATCAAGAAACATTTGGAGAAT
AAAACACATATTACTGAATATATCAGAAATGATGACGGGATAGTTTTAAA
AAATGTTTCTCCTACGAAATCAGCTGATAATTATTTATTACACAATGAAA
ATATTACCAAGAAACCCTTGGAGAATAAAACAGCTATAACTGATAATATC
ATAAATGAAGATAAGAAAAGTTTCAAAAACGTTTCACAGACGAAACCAGG
AGAAAACTATATATTAGACAACGAAAATATTTCAGAGGAGAATTTGGAAG
ACACTGTATCTCCATTTAAATACATAGAAAATGAAGATGGAACCTTTTCA
GAAATGGTTTTTCATGGAGAACAAATTCTAGATATTTCACTAGTAAATAA
AAATATGGTAAGTGAAAATGTAAAAATTCTAAGCCAAGTTACCGAGTTTG
TGGTAAAGGAAAAAGAAGAACATTCAAAAGTTTTTCAAGGTCTTGAAGAA
TCAAGTAGCACTGCAATTGAAAATAATGACCTCAATTTAATAAAAGTAGA
ATATGAAAATTTGTATGAATCCAGTGAGGAATCCGACATCTTAGAAATAA
TTTCATCAATTCAGAAAGTGCAAAATCCACTCTCTGAAAATGAAGTTTTG
CTATTTAATTTCAAAGCAACAGTGGATGATGCAAACTATACGTTATATAA
AAAAGGAGAGGAGTTGACTTCATCAAATTTCACAAACGAGAATATTCAAC
TATATAAAGAAATTCAAGAATCGCAAAGCGTTCAAAATGCAAATGAAAAC
CAAATTTTCTGGACAAATACTGACAAAACTACCGAAAAACCAATTATTGT
CACAGGATGTCTTAACGATAATACGAACATCGACAATGGAAATATGACAG
ATACGAAATTATCTAAAAAAAGAGATTTACAGCAGGAATCACTCGTTAAA
CGTATTTCATTTACTCGATATGAACATAAATCCTCGGGATTAAACTGTCA
ATCAAGTAAAAATGAGCTCGAGAATCACCAAAAAGAAACTATGTTAATTC
CGGGCCAGAAAATTATTAAAATGAACACAAAATCTGAGGATCAATTAGTC
GTAAAAGAAGCGGAAAAGAAACTTCCGTACAACGATAAAAATAGTGATTG
TGTCCTTAAAAGACTTTCAATTCAATACTCAGACCCGAAATTATCTGGAA
ATTTTCGAGCTCCAAGTAATGAAGGTGAATATTTTGGTGGAGAAAATTTG
AGAAAGAATTCTTTCAAAGAAAATGATGCGGATAATCAATCTACAAAGGC
TAAAATGGAAACACAATATCAAAATGCGAGTTATATCAAAAAACTTATGG
ATAGCTCACATGATACCGAACAGGAGTCACAGGAAAGTAAAACTTTAACT
GGCCATTCCGAAAGTACTGATCTAGCATCATTCTACGGATCGGGAACTCA
TTTATTTAATCCCGAGCATTCTCCTTTTACTCCACTAGATAATAGTAAAA
TTCAGAAATTTCCAATTTTAGAAAATTCAAAAGAGACCAAAACTGATTAT
TCTACAGAATCAAATGATTATTTTATTGTGAATACCAGACCGAGTGGATA
TCTCACGGATAAGTCATCATCGGCTTCATTTTATGGATCTGGCTCGTTGA
ATGGGATAAAGAAAGATTTATATAATATCGAGAAGAATTCCAACGATTAT
CTTTTCACAATAAATTCACAAGGATTAGAGTCCATGAAAATAAAAACTGT
TGATATTCATTTTGATACTGTAATAACGCATTCTCCAAAATACGAAACTG
ATAACTTTGACATTGATCAAATTGCATTTCTAGATACTTTTAAAAGTCCG
AATTTCGAAAAAATTTTGTTTGATGAGAAAGAACTTGAAATGAAGAGAAC
TGTATTAGAATCACTGAGCGTCGTCAGGTCCATTGAACCGATAAATGTGT
CCCTTATGCAATCATTGTTACCTGAAAATGCATTAGACATGCGACCCCCG
GATAATCCCCCAGATATTATCAAAACTATTGAAAGTGAAACAATTAAGTC
AACAAATATACCGCCTAACCATCATGAAAATATTGTACAAGTGATTGAGA
AAACGAAGAACATTTTGTTAACGGAGTCTCCAGAATTATCAGATTTTTAT
GACGTTGACCCTTGTTCGGACGTCTCACTTAGTCTAATACAAATGAATCA
ACTGACATGTCAGTCAAATGTCAACCAAAACAATAAATATTTGAAGAAAT
GTTCTAACGAAATCTTGGTCGGTACCGAACCTTCGGATTTACAAATTGTA
ACTAAAAGAAAGTACATATTTCCTATTGAAACATATAAGAAATTAAATAA
CAGATTTTTTACTTATAAATTTATAATTTCTCTTTCGACAACTATTTCAT
TCCACAAAATGACTCTAATCAAATTTCCGGTTAATAGCGTCCATAAACGG
AAGGCAGATTTTGCAAAAGGACAACACAAAATCTACAGTAATATAACAAA
AATGTTGACCTCTAGTCATGAGCACATAATTGATAGGAGGAAAAGGGGGA
AACTGAATCATACTCGCAAAGAAAGTAACCTTCCCGGAGCCAGTCAAAGC
TGATCCTGCAAGAGATAAATTGAAGTAAAACATTTTTATTGTTTCAATAT
TGCTTATGATTTGGGTTCATCAAACTGATTTGACTATTCTCTGTACTTGC
TAATTTAGCTGAACTGATTTAGTTATATTTATTACAGATTTATTATAAAT
AAATTATTTATTTTGTTGAAAAAAAA

protein sequence of SMED30014033-orf-1

>SMED30014033-orf-1 ID=SMED30014033-orf-1|Name=SMED30014033-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=1701bp
MKNLDLNSHDKYRLKKIKISIQIEKFRGFQRKFSNVFNNNAADSTEVFKP
DSFFVIKYANYRFLKKQICISKDWNDNQEKYSYSYKTNSFVSKITNKTKR
NLEKTTKIILNFKNKKQKSSNNSWRAKKEIQFKQFQVSNQPPNRFKNKPL
QASMNFSNFHGTLQFNKKLEPLACEDSFKLLKSHFFPKIIPTTNKSAPKF
KLTIKEIYRNSNKNKADNDFRSNQKTRMKNDQSQFPNLSSGSQLNERFQT
DKSSPFRRHNNQNFPTILTFKPANSKTSNLELKNQNDKSIKDQENIIINP
DGSVADKVAKIDVSLLKLENKLLENSVFVTKNETSYFVQNQDGKFGEHSS
TDKNSFLQNNQDGKFVEYSSTDKNSFQQHSLADFQTFIKNKDGSFSEAIL
QDRSALAKQSENINPRVVSENVEENVVTYIKNDDETVSKVISTTIKKGDF
TFENEYLGVPEATYVKNEDGIYRELNIKNKQDQFNLSEHSIEIVSGRNIK
NSTQNEFEHKNNDGTFREINFEIKPKTYNSKTLVEGNLKGSTSTDLYTKD
DRTLKEMNFENKSHQNGLINDATKEEINFDRLTLIDPVSENMDLSNPYIL
DATHQTSTYTNYSIDNKNRFDQNMKNRAPIYPFIKIEDVTFEDISFKNAS
VDNVNFIRKNMKSDSYFKNEDRTIKEINFEYKPDEFNSMNLNEGNVGSLV
WSDGFVRKDDRTSREENFINKTNVYGAPIATYARSPSGTFTEVLSKNKHE
NFLKGTKILSEENTTDKGSHVTYIEKEDTKFSGILTPIKTAENYLLDNDN
INKKNVENKTSVTENIKNEVGTVSKNVSMTKPAEKYLLDNENIIKKHLEN
KTHITEYIRNDDGIVLKNVSPTKSADNYLLHNENITKKPLENKTAITDNI
INEDKKSFKNVSQTKPGENYILDNENISEENLEDTVSPFKYIENEDGTFS
EMVFHGEQILDISLVNKNMVSENVKILSQVTEFVVKEKEEHSKVFQGLEE
SSSTAIENNDLNLIKVEYENLYESSEESDILEIISSIQKVQNPLSENEVL
LFNFKATVDDANYTLYKKGEELTSSNFTNENIQLYKEIQESQSVQNANEN
QIFWTNTDKTTEKPIIVTGCLNDNTNIDNGNMTDTKLSKKRDLQQESLVK
RISFTRYEHKSSGLNCQSSKNELENHQKETMLIPGQKIIKMNTKSEDQLV
VKEAEKKLPYNDKNSDCVLKRLSIQYSDPKLSGNFRAPSNEGEYFGGENL
RKNSFKENDADNQSTKAKMETQYQNASYIKKLMDSSHDTEQESQESKTLT
GHSESTDLASFYGSGTHLFNPEHSPFTPLDNSKIQKFPILENSKETKTDY
STESNDYFIVNTRPSGYLTDKSSSASFYGSGSLNGIKKDLYNIEKNSNDY
LFTINSQGLESMKIKTVDIHFDTVITHSPKYETDNFDIDQIAFLDTFKSP
NFEKILFDEKELEMKRTVLESLSVVRSIEPINVSLMQSLLPENALDMRPP
DNPPDIIKTIESETIKSTNIPPNHHENIVQVIEKTKNILLTESPELSDFY
DVDPCSDVSLSLIQMNQLTCQSNVNQNNKYLKKCSNEILVGTEPSDLQIV
TKRKYIFPIETYKKLNNRFFTYKFIISLSTTISFHKMTLIKFPVNSVHKR
KADFAKGQHKIYSNITKMLTSSHEHIIDRRKRGKLNHTRKESNLPGASQS
*

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **Planarian Anatomy**
Term	Definition
PLANA:0002089	reproductive organ

InterPro

Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1250..1264
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1680..1700
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1284..1305
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 213..265
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1247..1271
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 227..265
None	No IPR available	SUPERFAMILY	SSF141571	Pentapeptide repeat-like	coord: 551..661

Main menu

SMED30014033

Zeng et. al., 2018

▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Davies et. al., 2017

PAGE et. al., 2020

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 4

Owlery

blazegraph-runner