SMED30014002

Overview
NameSMED30014002
Smed IDSMED30014002
Length (bp)6812
Neoblast Clusters

Zeng et. al., 2018




 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

back to top
Alignments
SMED30014002 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.000282:133171..140870 -34010
Homology
BLAST of SMED30014002 vs. Planmine SMEST
Match: SMESG000019754.1 (SMESG000019754.1)

HSP 1 Score: 4214.45 bits (10929), Expect = 0.000e+0
Identity = 2173/2216 (98.06%), Postives = 2178/2216 (98.29%), Query Frame = 2
Query:   38 MATPKTYVYSFEHLKVLICSYSMELFNHLIKQARSNGLIYTGDLEIVSHKVHNRSSCNCREILKAAVXXXXXXXXXXXXVILPLEILELDQANAYLFVCEVHQSHKLPSSKLRIINITIKNGSNAQQNKSLVDKPKHCLLKLYKILNEEIWIRKDSLGRNNSFNGGKSLVYKECFKEISRELASKGALPGDLSQKCIYSRDNNRCWFDYCRLMDICIHHKLTAREIADIIKHLAAVDPMQPDPVICIKNKFENSESHNNYKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELLVYKTNRIEATKNRSSKYKFNDSAHRNXXXXXXXXXXXXXXXFDSSPVGPQADRRNCRCFKLSPVRQSQFPSKSNDLESQSYLWSPDNEFEYFPTLDDKKDFYDDGGHEYSTYDNRQYQPVKGIIRRNNTYHNLDSDHYGEFAGDQFDEEEYDPGIYEDFIRQTGISDTEDICIPGNYNESDRQSFYEGSNLNFKFIPNQASKFSGTSERRAPSHKTVFLRPVDKGNNVPRTRSSSQPMLPTKCKTYKLLSNTNNSQKPSAEFGDNSQANKLECKINTVNSSTQTFQKSQSLEDVEIIKLKKFASDSALCVKTADCQTNTNKPNEENEINDPSLQGLGVKMYKGEAVQTDSPPSDLXXXXXXXXXXXXQQMQYGDPNSIFNPKWINKHKSVLNEHNICFQHHSTKAHLKALCNSSQAWSENVERKFRENPFAYTVXXXXXXXXXXXXXXXXXXQIVEIENESVDKVSSVLVEADSRSIILFREYQHERFNDRNKVTSNSRSPFFEIGSTPSMSSNCRFNTNINNAIKNVTVSNQAHQARPYLGLKIYKCPVPGCRNLTEDTNYSCPSHTVPLSPDSSCSPERCLSRLSCIVGLNKQILENPDIDRHNSVHINALHNAIYGPYNDEDCSRVLGMGSQKLHKKPSAPIQSEYVNNDSQYLLSLNDPNRRFCNRHDSPHLINPNHISQPLVQPSYSATKFSQQSLCECYDLQSRKYILQEIQDLHNPASIAYQPPIGETVLPLPATSIRDCRSAKLSSCPKQTKENTQNNEFPAVIMNPSKICILSQTHPNFNEQFRYNKYSPCGRRIPVNLQLCPIEGCLNLTCTNSPPCLNSEYHDSFQPGKNYLNYNLTSPLNRNVSDWVCCKPLTGTRMPVPANCEVILDXXXXXXPTIDFVSQAPSDDPKKYASKANQIRSVSANSNSLQHKASNASKRSQIPNARVSSRKYDLLSGQTAEPSNTTSIKHVSSHHSTTNTLENYRPSSIRASVTSEMNEAESLKLPPDKLSNKRVDDVDSNVNHTSESRFLLQKDPNIERLSKSYLVNHTFSKETEERNDVSKHPQSQTEENNKSLYNSKSQSDLSSRTLPASPQRVSRVRNIEPDYTVEKLSKQFVTMSHNESFSPVSIFTNLTDDKSKISHIFLVEPPDYQLNDSRILETEKLPTGLLIQSDPEVLETYLQSEVDNIELNTSRIKETSFDLSTMTSVKDAKDNFAELLANIEEETDGRTVYNLLVNPMELDTRLQNESAISNINKLVNVSETEKQITTEGPPVIKNYAKQPSFSEVKELITTKPSVDILPRIDDLNKRISNQIASHRGSLVTEVSLFERSSYSKSHANPSTESIIQQNPFITSISPFHNNETSIGGNVLLNDCKTKDLRTSQASPKGQLTSTLFKNKIDSKSTSKLNKKPLNINSPKIKSNKRDLNSPNIDTFRELNRTPNSANQWKNISVFNQRFKPPNPLPKPSEDPCIKGSNIYSYALEIDVGKTFVGSESPYFTCKLGKSINNSSNIKLVSTKSNQNLNSDKVLFQSILATNALTAKSSSFVPCDVENNFAHRNYNIFFSTPDLIFNNFKFIITPEKFRLKSNLALEYCEPNSDSLAAVVDQPTNTQNSLSTAYVTIQTCNHTTPLVTVSQNISKTKKSKMRKLFRSFKSTKSQKQQFYCVQNEQKSEKTNKFLKTIFLLELKTKMMSFIKKYKNKGANESDKSQITSSDIEILVNDSESYSYFTDNLMIGVHGDKVSQNINLSKCNLWTRSCCDLHIRSRRKNKELCFKKIKKRSFSEPAIENTYKTRFDSNTLFRTSSMTYSEIPTSGLSLLCFEVLEKMERKLGRNPRLVEQLAARKFIESVDLWSQSSKDTLKLISRALHYLHGNPLDDSRQSNKTLDSVSSIRTCSADCIESISSLRQQIIRPIISTDTVISAYNKYLS 6685
            MATPKTYVYSFEHLKVLICSYSMELFNHLIKQARSNGLIYTGDLEIVSHKVHNRSSCNCREILKAAVEKFNNKFKTFEKVILPLEILELDQANAYLFVCEVHQSHKLPSSKLRIINITIKNGSNAQQNKSLVDKPKHCLLKLYKILNEEIWIRKDSLGRNNSFNGGKSLVYKECFKEISRELASKGALPGDLSQKCIYSRDNNRCWFDYCRLMDICIHHKLTAREIADIIKHLAAVDPMQPDPVICIKNKFENSESHNNYKNLSEPSESENESLSESGNSFTNSLDSSSSMSELLVYKTNRIEATKNRSSKYKFNDSAHRNKKHSKSKTTVKQTQTFDSSPVGPQADRRNCRCFKLSPVRQSQFPSKSNDLESQSYLWSPDNEFEYFPTLDDKKDFYDDGGHEYSTYDNRQYQPVKGIIRRNNTYHNLDSDHYGEFAGDQFDEEEYDPGIYEDFIRQTGISDTEDICIPGNYNESDRQSFYEGSNLNFKFIPNQASKFSGTSERRAPSHKTVFLRPVDKGNNVPRTRSSSQPMLPTKCKTYKLLSNTNNSQKPSAEFGDNSQANKLECKINTVNSSTQTFQKSQSLEDVEIIKLKKFASDSALCVKTADCQTNTNKPNEENEINDPSLQGLGVKMYKGEAVQTDSPPSDLSGNISASIRSSSQQMQYGDPNSIFNPKWINKHKSVLNEHNICFQHHSTKAHLKALCNSSQAWSENVERKFRENPFAYTVNRNANNHSLSRSASSRNSQIVEIENESVDKVSSVLVEADSRSIILFREYQHERFNDRNKVTSNSRSPFFEIGSTPSMSSNCRFNTNINNAIKNVTVSNQAHQARPYLGLKIYKCPVPGCRNLTEDTNYSCPSHTVPLSPDSSCSPERCLSRLSCIVGLNKQILENPDIDRHNSVHINALHNAIYGPYNDEDCSRVLGMGSQKLHKKPSAPIQSEYVNNDSQYLLSLNDPNRRFCNRHDSPHLINPNHISQPLVQPSYSATKFSQQSLCECYDLQSRKYILQEIQDLHNPASIAYQPPIGETVLPLPATSIRDCRSAKLSSCPKQTKENTQNNEFPAVIMNPSKICILSQTHPNFNEQFRYNKYSPCGRRIPVNLQLCPIEGCLNLTCTNSPPCLNSEYHDSFQPGKNYLNYNLTSPLNRNVSDWVCCKPLTGTRMPVPANCEVILDEELEEEPTIDFVSQAPSDDPKKYASKANQIRSVSANSNSLQHKASNASKRSQIPNARVSSRKYDLLSGQTAEPSNTTSIKHVSSHHSTTNTLENYRPSSIRASVTSEMNEAESLKLPPDKLSNKRVDDVDSNVNHTSESRFLLQKDPNIERLSKSYLVNHTFSKETEERNDVSKHPQSQTEENNKSLYNSKSQSDLSSRTLPASPQR+       P+ ++           H  +  P               HIFLVEPPDYQLNDSRILETEKLPTGLLIQSDPEVLETYLQSEVDNIELNTSRIKETSFDLSTMTSVKDAKDNFAELLANIEEETDGRTVYNLLVNPMELDTRLQNESAISNINKLVNVSETEKQITTEGPPVIKNYAKQPSFSEVKELITTKPSVDILPRIDDLNKRISNQIASHRGSLVTEVSLFERSSYSKSHANPSTESIIQQNPFITSISPFHNNETSIGGNVLLNDCKTKDLRTSQASPKGQLTSTLFKNKIDSKSTSKLNKKPLNINSPKIKSNKRDLNSPNIDTFRELNRTPNSANQWKNISVFNQRFKPPNPLPKPSEDPCIKGSNIYSYALEIDVGKTFVGSESPYFTCKLGKSINNSSNIKLVSTKSNQNLNSDKVLFQSILATNALTAKSSSFVPCDVENNFAHRNYNIFFSTPDLIFNNFKFIITPEKFRLKSNLALEYCEPNSDSLAAVVDQPTNTQNSLSTAYVTIQTCNHTTPLVTVSQNISKTKKSKMRKLFRSFKSTKSQKQQFYCVQNEQKSEKTNKFLKTIFLLELKTKMMSFIKKYKNKGANESDKSQITSSDIEILVNDSESYSYFTDNLMIGVHGDKVSQNINLSKCNLWTRSCCDLHIRSRRKNKELCFKKIKKRSFSEPAIENTYKTRFDSNTLFRTSSMTYSEIPTSGLSLLCFEVLEKMERKLGRNPRLVEQLAARKFIESVDLWSQSSKDTLKLISRALHYLHGNPLDDSRQSNKTLDSVSSIRTCSADCIESISSLRQQIIRPIISTDTVISAYNKYLS
Sbjct:    1 MATPKTYVYSFEHLKVLICSYSMELFNHLIKQARSNGLIYTGDLEIVSHKVHNRSSCNCREILKAAVEKFNNKFKTFEKVILPLEILELDQANAYLFVCEVHQSHKLPSSKLRIINITIKNGSNAQQNKSLVDKPKHCLLKLYKILNEEIWIRKDSLGRNNSFNGGKSLVYKECFKEISRELASKGALPGDLSQKCIYSRDNNRCWFDYCRLMDICIHHKLTAREIADIIKHLAAVDPMQPDPVICIKNKFENSESHNNYKNLSEPSESENESLSESGNSFTNSLDSSSSMSELLVYKTNRIEATKNRSSKYKFNDSAHRNKKHSKSKTTVKQTQTFDSSPVGPQADRRNCRCFKLSPVRQSQFPSKSNDLESQSYLWSPDNEFEYFPTLDDKKDFYDDGGHEYSTYDNRQYQPVKGIIRRNNTYHNLDSDHYGEFAGDQFDEEEYDPGIYEDFIRQTGISDTEDICIPGNYNESDRQSFYEGSNLNFKFIPNQASKFSGTSERRAPSHKTVFLRPVDKGNNVPRTRSSSQPMLPTKCKTYKLLSNTNNSQKPSAEFGDNSQANKLECKINTVNSSTQTFQKSQSLEDVEIIKLKKFASDSALCVKTADCQTNTNKPNEENEINDPSLQGLGVKMYKGEAVQTDSPPSDLSGNISASIRSSSQQMQYGDPNSIFNPKWINKHKSVLNEHNICFQHHSTKAHLKALCNSSQAWSENVERKFRENPFAYTVNRNANNHSLSRSASSRNSQIVEIENESVDKVSSVLVEADSRSIILFREYQHERFNDRNKVTSNSRSPFFEIGSTPSMSSNCRFNTNINNAIKNVTVSNQAHQARPYLGLKIYKCPVPGCRNLTEDTNYSCPSHTVPLSPDSSCSPERCLSRLSCIVGLNKQILENPDIDRHNSVHINALHNAIYGPYNDEDCSRVLGMGSQKLHKKPSAPIQSEYVNNDSQYLLSLNDPNRRFCNRHDSPHLINPNHISQPLVQPSYSATKFSQQSLCECYDLQSRKYILQEIQDLHNPASIAYQPPIGETVLPLPATSIRDCRSAKLSSCPKQTKENTQNNEFPAVIMNPSKICILSQTHPNFNEQFRYNKYSPCGRRIPVNLQLCPIEGCLNLTCTNSPPCLNSEYHDSFQPGKNYLNYNLTSPLNRNVSDWVCCKPLTGTRMPVPANCEVILDEELEEEPTIDFVSQAPSDDPKKYASKANQIRSVSANSNSLQHKASNASKRSQIPNARVSSRKYDLLSGQTAEPSNTTSIKHVSSHHSTTNTLENYRPSSIRASVTSEMNEAESLKLPPDKLSNKRVDDVDSNVNHTSESRFLLQKDPNIERLSKSYLVNHTFSKETEERNDVSKHPQSQTEENNKSLYNSKSQSDLSSRTLPASPQRLKNY----PNSSLR---------CHTTNRFP--------------RHIFLVEPPDYQLNDSRILETEKLPTGLLIQSDPEVLETYLQSEVDNIELNTSRIKETSFDLSTMTSVKDAKDNFAELLANIEEETDGRTVYNLLVNPMELDTRLQNESAISNINKLVNVSETEKQITTEGPPVIKNYAKQPSFSEVKELITTKPSVDILPRIDDLNKRISNQIASHRGSLVTEVSLFERSSYSKSHANPSTESIIQQNPFITSISPFHNNETSIGGNVLLNDCKTKDLRTSQASPKGQLTSTLFKNKIDSKSTSKLNKKPLNINSPKIKSNKRDLNSPNIDTFRELNRTPNSANQWKNISVFNQRFKPPNPLPKPSEDPCIKGSNIYSYALEIDVGKTFVGSESPYFTCKLGKSINNSSNIKLVSTKSNQNLNSDKVLFQSILATNALTAKSSSFVPCDVENNFAHRNYNIFFSTPDLIFNNFKFIITPEKFRLKSNLALEYCEPNSDSLAAVVDQPTNTQNSLSTAYVTIQTCNHTTPLVTVSQNISKTKKSKMRKLFRSFKSTKSQKQQFYCVQNEQKSEKTNKFLKTIFLLELKTKMMSFIKKYKNKGANESDKSQITSSDIEILVNDSESYSYFTDNLMIGVHGDKVSQNINLSKCNLWTRSCCDLHIRSRRKNKELCFKKIKKRSFSEPAIENTYKTRFDSNTLFRTSSMTYSEIPTSGLSLLCFEVLEKMERKLGRNPRLVEQLAARKFIESVDLWSQSSKDTLKLISRALHYLHGNPLDDSRQSNKTLDSVSSIRTCSADCIESISSLRQQIIRPIISTDTVISAYNKYLS 2189          
BLAST of SMED30014002 vs. Planmine SMEST
Match: SMESG000019754.1 (SMESG000019754.1)

HSP 1 Score: 4168.23 bits (10809), Expect = 0.000e+0
Identity = 2151/2194 (98.04%), Postives = 2156/2194 (98.27%), Query Frame = 2
Query:  104 MELFNHLIKQARSNGLIYTGDLEIVSHKVHNRSSCNCREILKAAVXXXXXXXXXXXXVILPLEILELDQANAYLFVCEVHQSHKLPSSKLRIINITIKNGSNAQQNKSLVDKPKHCLLKLYKILNEEIWIRKDSLGRNNSFNGGKSLVYKECFKEISRELASKGALPGDLSQKCIYSRDNNRCWFDYCRLMDICIHHKLTAREIADIIKHLAAVDPMQPDPVICIKNKFENSESHNNYKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELLVYKTNRIEATKNRSSKYKFNDSAHRNXXXXXXXXXXXXXXXFDSSPVGPQADRRNCRCFKLSPVRQSQFPSKSNDLESQSYLWSPDNEFEYFPTLDDKKDFYDDGGHEYSTYDNRQYQPVKGIIRRNNTYHNLDSDHYGEFAGDQFDEEEYDPGIYEDFIRQTGISDTEDICIPGNYNESDRQSFYEGSNLNFKFIPNQASKFSGTSERRAPSHKTVFLRPVDKGNNVPRTRSSSQPMLPTKCKTYKLLSNTNNSQKPSAEFGDNSQANKLECKINTVNSSTQTFQKSQSLEDVEIIKLKKFASDSALCVKTADCQTNTNKPNEENEINDPSLQGLGVKMYKGEAVQTDSPPSDLXXXXXXXXXXXXQQMQYGDPNSIFNPKWINKHKSVLNEHNICFQHHSTKAHLKALCNSSQAWSENVERKFRENPFAYTVXXXXXXXXXXXXXXXXXXQIVEIENESVDKVSSVLVEADSRSIILFREYQHERFNDRNKVTSNSRSPFFEIGSTPSMSSNCRFNTNINNAIKNVTVSNQAHQARPYLGLKIYKCPVPGCRNLTEDTNYSCPSHTVPLSPDSSCSPERCLSRLSCIVGLNKQILENPDIDRHNSVHINALHNAIYGPYNDEDCSRVLGMGSQKLHKKPSAPIQSEYVNNDSQYLLSLNDPNRRFCNRHDSPHLINPNHISQPLVQPSYSATKFSQQSLCECYDLQSRKYILQEIQDLHNPASIAYQPPIGETVLPLPATSIRDCRSAKLSSCPKQTKENTQNNEFPAVIMNPSKICILSQTHPNFNEQFRYNKYSPCGRRIPVNLQLCPIEGCLNLTCTNSPPCLNSEYHDSFQPGKNYLNYNLTSPLNRNVSDWVCCKPLTGTRMPVPANCEVILDXXXXXXPTIDFVSQAPSDDPKKYASKANQIRSVSANSNSLQHKASNASKRSQIPNARVSSRKYDLLSGQTAEPSNTTSIKHVSSHHSTTNTLENYRPSSIRASVTSEMNEAESLKLPPDKLSNKRVDDVDSNVNHTSESRFLLQKDPNIERLSKSYLVNHTFSKETEERNDVSKHPQSQTEENNKSLYNSKSQSDLSSRTLPASPQRVSRVRNIEPDYTVEKLSKQFVTMSHNESFSPVSIFTNLTDDKSKISHIFLVEPPDYQLNDSRILETEKLPTGLLIQSDPEVLETYLQSEVDNIELNTSRIKETSFDLSTMTSVKDAKDNFAELLANIEEETDGRTVYNLLVNPMELDTRLQNESAISNINKLVNVSETEKQITTEGPPVIKNYAKQPSFSEVKELITTKPSVDILPRIDDLNKRISNQIASHRGSLVTEVSLFERSSYSKSHANPSTESIIQQNPFITSISPFHNNETSIGGNVLLNDCKTKDLRTSQASPKGQLTSTLFKNKIDSKSTSKLNKKPLNINSPKIKSNKRDLNSPNIDTFRELNRTPNSANQWKNISVFNQRFKPPNPLPKPSEDPCIKGSNIYSYALEIDVGKTFVGSESPYFTCKLGKSINNSSNIKLVSTKSNQNLNSDKVLFQSILATNALTAKSSSFVPCDVENNFAHRNYNIFFSTPDLIFNNFKFIITPEKFRLKSNLALEYCEPNSDSLAAVVDQPTNTQNSLSTAYVTIQTCNHTTPLVTVSQNISKTKKSKMRKLFRSFKSTKSQKQQFYCVQNEQKSEKTNKFLKTIFLLELKTKMMSFIKKYKNKGANESDKSQITSSDIEILVNDSESYSYFTDNLMIGVHGDKVSQNINLSKCNLWTRSCCDLHIRSRRKNKELCFKKIKKRSFSEPAIENTYKTRFDSNTLFRTSSMTYSEIPTSGLSLLCFEVLEKMERKLGRNPRLVEQLAARKFIESVDLWSQSSKDTLKLISRALHYLHGNPLDDSRQSNKTLDSVSSIRTCSADCIESISSLRQQIIRPIISTDTVISAYNKYLS 6685
            MELFNHLIKQARSNGLIYTGDLEIVSHKVHNRSSCNCREILKAAVEKFNNKFKTFEKVILPLEILELDQANAYLFVCEVHQSHKLPSSKLRIINITIKNGSNAQQNKSLVDKPKHCLLKLYKILNEEIWIRKDSLGRNNSFNGGKSLVYKECFKEISRELASKGALPGDLSQKCIYSRDNNRCWFDYCRLMDICIHHKLTAREIADIIKHLAAVDPMQPDPVICIKNKFENSESHNNYKNLSEPSESENESLSESGNSFTNSLDSSSSMSELLVYKTNRIEATKNRSSKYKFNDSAHRNKKHSKSKTTVKQTQTFDSSPVGPQADRRNCRCFKLSPVRQSQFPSKSNDLESQSYLWSPDNEFEYFPTLDDKKDFYDDGGHEYSTYDNRQYQPVKGIIRRNNTYHNLDSDHYGEFAGDQFDEEEYDPGIYEDFIRQTGISDTEDICIPGNYNESDRQSFYEGSNLNFKFIPNQASKFSGTSERRAPSHKTVFLRPVDKGNNVPRTRSSSQPMLPTKCKTYKLLSNTNNSQKPSAEFGDNSQANKLECKINTVNSSTQTFQKSQSLEDVEIIKLKKFASDSALCVKTADCQTNTNKPNEENEINDPSLQGLGVKMYKGEAVQTDSPPSDLSGNISASIRSSSQQMQYGDPNSIFNPKWINKHKSVLNEHNICFQHHSTKAHLKALCNSSQAWSENVERKFRENPFAYTVNRNANNHSLSRSASSRNSQIVEIENESVDKVSSVLVEADSRSIILFREYQHERFNDRNKVTSNSRSPFFEIGSTPSMSSNCRFNTNINNAIKNVTVSNQAHQARPYLGLKIYKCPVPGCRNLTEDTNYSCPSHTVPLSPDSSCSPERCLSRLSCIVGLNKQILENPDIDRHNSVHINALHNAIYGPYNDEDCSRVLGMGSQKLHKKPSAPIQSEYVNNDSQYLLSLNDPNRRFCNRHDSPHLINPNHISQPLVQPSYSATKFSQQSLCECYDLQSRKYILQEIQDLHNPASIAYQPPIGETVLPLPATSIRDCRSAKLSSCPKQTKENTQNNEFPAVIMNPSKICILSQTHPNFNEQFRYNKYSPCGRRIPVNLQLCPIEGCLNLTCTNSPPCLNSEYHDSFQPGKNYLNYNLTSPLNRNVSDWVCCKPLTGTRMPVPANCEVILDEELEEEPTIDFVSQAPSDDPKKYASKANQIRSVSANSNSLQHKASNASKRSQIPNARVSSRKYDLLSGQTAEPSNTTSIKHVSSHHSTTNTLENYRPSSIRASVTSEMNEAESLKLPPDKLSNKRVDDVDSNVNHTSESRFLLQKDPNIERLSKSYLVNHTFSKETEERNDVSKHPQSQTEENNKSLYNSKSQSDLSSRTLPASPQR+       P+ ++           H  +  P               HIFLVEPPDYQLNDSRILETEKLPTGLLIQSDPEVLETYLQSEVDNIELNTSRIKETSFDLSTMTSVKDAKDNFAELLANIEEETDGRTVYNLLVNPMELDTRLQNESAISNINKLVNVSETEKQITTEGPPVIKNYAKQPSFSEVKELITTKPSVDILPRIDDLNKRISNQIASHRGSLVTEVSLFERSSYSKSHANPSTESIIQQNPFITSISPFHNNETSIGGNVLLNDCKTKDLRTSQASPKGQLTSTLFKNKIDSKSTSKLNKKPLNINSPKIKSNKRDLNSPNIDTFRELNRTPNSANQWKNISVFNQRFKPPNPLPKPSEDPCIKGSNIYSYALEIDVGKTFVGSESPYFTCKLGKSINNSSNIKLVSTKSNQNLNSDKVLFQSILATNALTAKSSSFVPCDVENNFAHRNYNIFFSTPDLIFNNFKFIITPEKFRLKSNLALEYCEPNSDSLAAVVDQPTNTQNSLSTAYVTIQTCNHTTPLVTVSQNISKTKKSKMRKLFRSFKSTKSQKQQFYCVQNEQKSEKTNKFLKTIFLLELKTKMMSFIKKYKNKGANESDKSQITSSDIEILVNDSESYSYFTDNLMIGVHGDKVSQNINLSKCNLWTRSCCDLHIRSRRKNKELCFKKIKKRSFSEPAIENTYKTRFDSNTLFRTSSMTYSEIPTSGLSLLCFEVLEKMERKLGRNPRLVEQLAARKFIESVDLWSQSSKDTLKLISRALHYLHGNPLDDSRQSNKTLDSVSSIRTCSADCIESISSLRQQIIRPIISTDTVISAYNKYLS
Sbjct:    1 MELFNHLIKQARSNGLIYTGDLEIVSHKVHNRSSCNCREILKAAVEKFNNKFKTFEKVILPLEILELDQANAYLFVCEVHQSHKLPSSKLRIINITIKNGSNAQQNKSLVDKPKHCLLKLYKILNEEIWIRKDSLGRNNSFNGGKSLVYKECFKEISRELASKGALPGDLSQKCIYSRDNNRCWFDYCRLMDICIHHKLTAREIADIIKHLAAVDPMQPDPVICIKNKFENSESHNNYKNLSEPSESENESLSESGNSFTNSLDSSSSMSELLVYKTNRIEATKNRSSKYKFNDSAHRNKKHSKSKTTVKQTQTFDSSPVGPQADRRNCRCFKLSPVRQSQFPSKSNDLESQSYLWSPDNEFEYFPTLDDKKDFYDDGGHEYSTYDNRQYQPVKGIIRRNNTYHNLDSDHYGEFAGDQFDEEEYDPGIYEDFIRQTGISDTEDICIPGNYNESDRQSFYEGSNLNFKFIPNQASKFSGTSERRAPSHKTVFLRPVDKGNNVPRTRSSSQPMLPTKCKTYKLLSNTNNSQKPSAEFGDNSQANKLECKINTVNSSTQTFQKSQSLEDVEIIKLKKFASDSALCVKTADCQTNTNKPNEENEINDPSLQGLGVKMYKGEAVQTDSPPSDLSGNISASIRSSSQQMQYGDPNSIFNPKWINKHKSVLNEHNICFQHHSTKAHLKALCNSSQAWSENVERKFRENPFAYTVNRNANNHSLSRSASSRNSQIVEIENESVDKVSSVLVEADSRSIILFREYQHERFNDRNKVTSNSRSPFFEIGSTPSMSSNCRFNTNINNAIKNVTVSNQAHQARPYLGLKIYKCPVPGCRNLTEDTNYSCPSHTVPLSPDSSCSPERCLSRLSCIVGLNKQILENPDIDRHNSVHINALHNAIYGPYNDEDCSRVLGMGSQKLHKKPSAPIQSEYVNNDSQYLLSLNDPNRRFCNRHDSPHLINPNHISQPLVQPSYSATKFSQQSLCECYDLQSRKYILQEIQDLHNPASIAYQPPIGETVLPLPATSIRDCRSAKLSSCPKQTKENTQNNEFPAVIMNPSKICILSQTHPNFNEQFRYNKYSPCGRRIPVNLQLCPIEGCLNLTCTNSPPCLNSEYHDSFQPGKNYLNYNLTSPLNRNVSDWVCCKPLTGTRMPVPANCEVILDEELEEEPTIDFVSQAPSDDPKKYASKANQIRSVSANSNSLQHKASNASKRSQIPNARVSSRKYDLLSGQTAEPSNTTSIKHVSSHHSTTNTLENYRPSSIRASVTSEMNEAESLKLPPDKLSNKRVDDVDSNVNHTSESRFLLQKDPNIERLSKSYLVNHTFSKETEERNDVSKHPQSQTEENNKSLYNSKSQSDLSSRTLPASPQRLKNY----PNSSLR---------CHTTNRFP--------------RHIFLVEPPDYQLNDSRILETEKLPTGLLIQSDPEVLETYLQSEVDNIELNTSRIKETSFDLSTMTSVKDAKDNFAELLANIEEETDGRTVYNLLVNPMELDTRLQNESAISNINKLVNVSETEKQITTEGPPVIKNYAKQPSFSEVKELITTKPSVDILPRIDDLNKRISNQIASHRGSLVTEVSLFERSSYSKSHANPSTESIIQQNPFITSISPFHNNETSIGGNVLLNDCKTKDLRTSQASPKGQLTSTLFKNKIDSKSTSKLNKKPLNINSPKIKSNKRDLNSPNIDTFRELNRTPNSANQWKNISVFNQRFKPPNPLPKPSEDPCIKGSNIYSYALEIDVGKTFVGSESPYFTCKLGKSINNSSNIKLVSTKSNQNLNSDKVLFQSILATNALTAKSSSFVPCDVENNFAHRNYNIFFSTPDLIFNNFKFIITPEKFRLKSNLALEYCEPNSDSLAAVVDQPTNTQNSLSTAYVTIQTCNHTTPLVTVSQNISKTKKSKMRKLFRSFKSTKSQKQQFYCVQNEQKSEKTNKFLKTIFLLELKTKMMSFIKKYKNKGANESDKSQITSSDIEILVNDSESYSYFTDNLMIGVHGDKVSQNINLSKCNLWTRSCCDLHIRSRRKNKELCFKKIKKRSFSEPAIENTYKTRFDSNTLFRTSSMTYSEIPTSGLSLLCFEVLEKMERKLGRNPRLVEQLAARKFIESVDLWSQSSKDTLKLISRALHYLHGNPLDDSRQSNKTLDSVSSIRTCSADCIESISSLRQQIIRPIISTDTVISAYNKYLS 2167          
The following BLAST results are available for this feature:
BLAST of SMED30014002 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30014002 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30014002 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30014002 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30014002 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30014002 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30014002 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30014002 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30014002 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30014002 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30014002 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30014002 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30014002 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30014002 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 2
Match NameE-valueIdentityDescription
SMESG000019754.10.000e+098.06SMESG000019754.1[more]
SMESG000019754.10.000e+098.04SMESG000019754.1[more]
back to top
Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30014002 ID=SMED30014002|Name=SMED30014002|organism=Schmidtea mediterranea sexual|type=transcript|length=6812bp
GAAAATTCCATGAAATCTATTGGGAAATTATTATTTGATGGCCACCCCTA
AAACGTACGTTTATTCATTCGAACACCTGAAAGTTCTGATATGTTCCTAT
TCCATGGAACTGTTCAACCACCTCATCAAGCAGGCCCGATCGAACGGGCT
CATCTACACGGGCGACCTGGAAATCGTCTCCCATAAAGTCCACAACAGGT
CGAGTTGCAATTGTCGGGAAATCCTCAAAGCTGCTGTGGAAAAATTTAAT
AACAAATTTAAAACATTTGAAAAGGTGATTTTGCCATTGGAAATCCTCGA
GCTGGACCAGGCAAATGCCTATCTATTCGTCTGCGAGGTCCACCAATCTC
ACAAGCTCCCCTCAAGTAAGCTCCGAATCATCAACATAACGATCAAGAAC
GGTAGCAACGCCCAACAGAATAAGTCGCTAGTGGATAAACCGAAGCATTG
TCTGTTAAAACTTTATAAAATTCTAAACGAAGAGATTTGGATTAGGAAGG
ACAGCTTGGGCCGCAACAATTCATTTAACGGAGGAAAGTCATTGGTCTAT
AAGGAATGCTTTAAGGAGATTTCTCGGGAACTTGCAAGCAAAGGTGCTTT
GCCGGGGGATTTGTCACAGAAATGTATTTATTCTAGGGACAACAACCGCT
GTTGGTTTGACTATTGCCGACTGATGGACATCTGCATCCACCACAAGCTC
ACGGCCAGGGAAATCGCCGACATTATCAAGCACTTGGCCGCAGTAGACCC
CATGCAGCCCGATCCGGTTATTTGTATCAAAAACAAATTCGAGAATTCTG
AATCTCATAACAACTACAAGAATTTGTCCGAACCTTCGGAAAGCGAAAAC
GAATCTCTTTCAGAGTCTGGAAATTCTTTCACAAATTCATTGGATTCGAG
CTCGTCAATGAGTGAACTCTTGGTCTACAAAACCAATCGAATTGAAGCGA
CCAAAAACCGAAGCTCCAAATACAAGTTCAATGATTCAGCTCACCGCAAT
AAGAAGCACTCGAAATCGAAAACAACAGTGAAACAAACCCAAACATTCGA
TTCCTCGCCAGTTGGACCTCAAGCGGACAGGCGTAATTGCAGATGCTTCA
AGTTAAGCCCAGTCCGACAATCACAGTTCCCGTCAAAGTCGAATGATCTC
GAGTCTCAAAGTTACCTCTGGTCTCCAGATAATGAATTCGAGTACTTCCC
AACACTCGATGACAAGAAAGATTTCTACGATGATGGAGGTCACGAGTACT
CCACGTATGACAATCGGCAATACCAGCCGGTGAAAGGAATAATACGCAGG
AATAATACCTATCACAATTTAGACAGCGATCATTACGGAGAATTCGCCGG
TGATCAATTTGATGAAGAAGAATACGACCCAGGGATTTATGAGGATTTTA
TCAGGCAAACTGGAATCTCTGATACTGAGGATATTTGTATACCGGGCAAC
TACAACGAATCCGATAGGCAGAGTTTCTATGAAGGTTCAAACCTCAATTT
CAAGTTCATTCCCAATCAAGCATCAAAATTCAGTGGAACGTCAGAGAGAA
GGGCACCTAGCCATAAAACCGTATTTTTGAGGCCCGTCGATAAAGGCAAT
AACGTCCCAAGGACACGATCTTCCAGTCAGCCAATGTTACCAACGAAATG
TAAAACTTATAAACTTTTATCAAACACGAATAACTCTCAAAAGCCTTCCG
CCGAATTCGGGGACAACAGCCAGGCCAATAAATTGGAATGCAAAATAAAT
ACAGTCAATTCGTCCACGCAAACCTTTCAAAAGTCCCAATCATTGGAAGA
TGTCGAGATTATTAAGTTGAAGAAATTTGCTTCTGATAGCGCTCTTTGCG
TCAAAACCGCAGACTGCCAGACTAACACGAATAAACCTAACGAAGAAAAT
GAAATAAATGATCCGAGTCTTCAAGGTCTAGGAGTAAAAATGTATAAAGG
AGAAGCCGTACAAACTGATTCTCCGCCGTCCGATTTATCGGGAAACATAT
CTGCCAGCATAAGGTCGTCATCCCAGCAAATGCAATATGGAGACCCAAAC
TCCATATTTAACCCGAAATGGATAAACAAACATAAATCCGTATTGAATGA
GCACAACATATGTTTCCAGCATCATTCTACAAAGGCTCACTTGAAAGCCC
TTTGCAATTCCTCACAAGCATGGAGTGAGAATGTCGAGAGGAAATTCCGC
GAGAATCCATTCGCATATACCGTTAATAGGAACGCAAATAACCATTCCTT
GTCTCGCAGCGCGAGTAGCAGAAATTCTCAAATCGTCGAGATAGAAAACG
AGAGCGTCGACAAAGTCTCGTCAGTGCTTGTTGAAGCCGATAGCCGTTCC
ATCATTCTGTTTCGTGAATATCAACATGAACGTTTCAATGACAGAAATAA
AGTAACCAGCAACTCAAGAAGTCCATTTTTCGAAATCGGGTCGACCCCTT
CCATGTCATCGAACTGCAGGTTCAACACGAACATCAATAATGCCATTAAA
AATGTAACAGTCTCAAATCAAGCCCATCAAGCCCGTCCATATCTCGGCTT
GAAGATATACAAATGCCCAGTTCCTGGCTGTAGGAATCTTACTGAAGATA
CAAACTATTCCTGCCCGAGTCACACGGTCCCATTGTCGCCGGATTCATCT
TGTTCTCCAGAAAGGTGTCTGAGTCGACTCTCGTGCATTGTAGGCCTCAA
CAAGCAAATCTTGGAAAATCCCGATATTGACAGGCATAATTCAGTTCATA
TCAACGCATTACACAACGCCATTTACGGACCTTACAACGATGAAGACTGT
TCCAGAGTGCTGGGCATGGGATCCCAGAAGTTACATAAAAAGCCATCAGC
TCCTATTCAATCTGAATATGTTAACAATGACAGCCAATATCTGTTGTCGC
TTAACGATCCGAATAGACGATTCTGTAACCGGCACGATTCTCCTCATCTC
ATCAACCCGAATCACATATCCCAACCGCTAGTACAACCTTCATACTCGGC
CACGAAATTCTCACAACAAAGTCTCTGTGAGTGCTACGATTTACAGTCTA
GGAAATATATACTTCAAGAAATCCAAGACCTCCACAATCCGGCTTCGATT
GCCTATCAACCGCCGATCGGAGAAACTGTGCTTCCGTTGCCAGCCACTTC
AATTCGGGATTGTAGAAGCGCCAAACTATCAAGCTGTCCCAAGCAAACTA
AAGAAAACACTCAAAACAATGAATTTCCTGCAGTCATTATGAATCCATCA
AAGATCTGCATACTATCACAGACCCATCCAAACTTCAACGAACAGTTTCG
ATACAATAAATATAGCCCATGTGGACGTCGGATACCCGTGAACTTGCAAT
TGTGTCCCATTGAAGGCTGCTTGAATTTGACTTGCACCAATAGTCCGCCT
TGTCTAAACAGTGAATATCACGACAGCTTCCAGCCGGGCAAAAACTATCT
CAACTACAATTTAACATCTCCACTCAACCGAAATGTTTCCGATTGGGTTT
GCTGCAAACCTCTCACTGGAACCAGAATGCCTGTCCCTGCCAATTGTGAA
GTGATTCTTGATGAGGAACTGGAAGAGGAGCCAACAATTGACTTCGTCTC
GCAAGCTCCCAGTGATGACCCAAAGAAATACGCATCGAAAGCAAACCAAA
TCAGGTCCGTTTCAGCCAATTCCAATTCCTTGCAACATAAAGCATCAAAT
GCCAGTAAGAGAAGTCAGATTCCAAACGCCCGGGTTTCCTCAAGGAAATA
TGATTTATTAAGTGGTCAGACAGCTGAGCCTAGCAATACGACCTCAATTA
AACACGTTTCAAGCCATCATTCGACAACAAATACCTTGGAAAACTATAGA
CCAAGTTCCATCCGGGCCTCGGTAACCTCTGAAATGAATGAAGCCGAATC
TCTCAAACTTCCGCCAGACAAATTATCCAATAAACGAGTGGATGATGTTG
ACTCCAATGTGAATCACACTTCTGAATCCCGTTTTCTTCTCCAGAAAGAT
CCCAATATCGAGCGGCTTTCAAAGTCCTACCTCGTTAACCATACCTTCTC
CAAAGAGACCGAAGAACGAAATGATGTTTCAAAACATCCTCAATCGCAAA
CCGAGGAAAACAACAAGAGCCTTTACAATTCAAAATCACAATCGGATTTA
TCATCACGGACCTTGCCGGCTTCTCCTCAAAGGGTTTCTCGAGTCAGAAA
CATTGAACCGGATTATACAGTTGAAAAACTATCCAAACAGTTCGTTACGA
TGTCACACAACGAATCGTTTTCCCCGGTGAGTATTTTCACAAATCTCACT
GACGATAAATCTAAAATCAGCCACATCTTTCTTGTGGAGCCCCCAGATTA
TCAATTGAACGACTCCAGGATCCTTGAGACAGAAAAGCTACCGACCGGAT
TGTTAATTCAATCCGACCCGGAAGTCCTGGAAACGTACCTTCAATCGGAA
GTTGACAATATTGAATTGAACACCAGTAGAATTAAAGAGACTTCATTCGA
CCTCAGCACTATGACAAGCGTGAAAGATGCAAAAGATAACTTTGCTGAAC
TCCTGGCAAACATAGAAGAGGAAACTGACGGTCGAACAGTTTATAACCTC
CTAGTAAATCCTATGGAACTCGACACTCGGTTACAAAATGAGAGTGCTAT
ATCGAATATCAACAAACTCGTCAACGTTTCGGAAACTGAAAAGCAAATCA
CAACTGAAGGGCCGCCGGTTATTAAAAACTATGCAAAACAACCGAGTTTT
TCAGAAGTTAAAGAACTCATAACCACAAAACCCTCTGTTGATATTCTTCC
GAGAATTGATGATCTCAATAAAAGAATTTCCAATCAAATTGCGAGTCATA
GAGGTTCCCTGGTTACGGAGGTGTCTTTATTTGAAAGATCTTCTTATAGC
AAATCCCATGCAAACCCGTCGACCGAAAGTATAATCCAACAAAACCCGTT
TATCACATCCATTTCCCCCTTTCATAATAACGAGACAAGTATAGGAGGCA
ACGTCCTTTTAAATGATTGTAAAACCAAGGATTTAAGGACTTCACAAGCC
AGTCCAAAAGGACAGTTAACATCGACATTATTCAAAAATAAAATTGACAG
CAAAAGTACTTCCAAACTAAACAAAAAACCACTAAATATAAATAGCCCAA
AAATTAAGAGTAATAAAAGGGACCTGAATTCTCCTAATATAGATACCTTT
AGGGAGCTTAATAGGACGCCTAACTCCGCAAACCAATGGAAAAACATATC
GGTTTTCAACCAACGATTTAAACCCCCGAATCCCTTGCCTAAGCCATCTG
AAGACCCATGCATAAAAGGCAGTAACATCTATTCCTATGCTCTGGAAATC
GATGTAGGCAAAACCTTTGTCGGTTCCGAGAGTCCTTATTTCACATGCAA
ATTGGGGAAATCCATAAACAACTCTTCAAATATAAAACTCGTTTCAACAA
AAAGTAATCAGAATTTGAATTCCGACAAAGTTCTGTTCCAGAGCATCTTG
GCAACGAATGCTTTGACCGCAAAATCGAGTTCGTTTGTACCGTGCGACGT
AGAAAACAACTTTGCTCATCGAAATTATAACATTTTCTTCTCGACTCCCG
ATCTCATATTCAACAACTTTAAATTCATAATTACCCCGGAAAAGTTTCGG
CTTAAGAGTAACTTGGCATTGGAATACTGCGAGCCGAATTCCGACAGCCT
GGCAGCGGTGGTCGACCAGCCGACAAACACCCAGAATTCTCTCTCAACGG
CCTACGTGACTATACAAACCTGCAATCATACAACACCTCTTGTGACAGTG
AGCCAGAATATATCGAAGACGAAGAAAAGTAAAATGAGAAAGCTGTTTAG
GTCTTTCAAGTCCACAAAGTCCCAGAAACAACAATTTTACTGCGTTCAAA
ATGAACAAAAATCCGAAAAAACAAACAAATTTCTCAAAACGATTTTTCTT
TTGGAATTGAAAACGAAGATGATGAGCTTCATCAAGAAGTATAAAAACAA
AGGAGCAAATGAAAGCGACAAAAGCCAAATCACCTCGTCAGACATAGAAA
TACTAGTCAATGACTCCGAGTCCTATTCCTACTTCACTGATAACTTGATG
ATTGGCGTACATGGAGATAAAGTGTCACAAAATATCAACCTATCCAAGTG
CAATTTATGGACAAGAAGTTGTTGTGACCTTCACATAAGGAGCAGACGCA
AAAATAAAGAATTATGCTTCAAAAAGATTAAGAAAAGATCATTTAGTGAG
CCAGCCATTGAGAACACATACAAAACTCGATTCGATTCCAACACCCTCTT
TCGAACTTCATCGATGACCTATTCAGAGATTCCTACTTCGGGATTGAGTT
TGTTATGCTTTGAAGTTCTAGAGAAAATGGAAAGAAAATTGGGAAGAAAT
CCACGGCTTGTGGAGCAGTTAGCTGCTAGGAAGTTCATCGAGTCTGTCGA
TTTGTGGTCGCAATCAAGTAAAGACACTTTAAAATTGATTAGTCGAGCAC
TTCATTACCTCCACGGAAACCCCCTAGATGACAGCAGACAGTCGAATAAG
ACTTTGGACTCCGTAAGTTCGATAAGGACATGCTCGGCCGACTGCATTGA
GTCCATCTCATCTTTGCGACAGCAAATTATACGTCCGATCATCTCCACAG
ACACAGTCATTTCCGCGTACAACAAATATTTATCGTGATTGATAAGCAGT
AGAAATCGTACCGGTCCACATTGGACAGTAATGTTGTAGATCCCTTTTAC
GTAAATCTCAGTCCTGGAGGCTGCACATAATTATTTTTATGTCAAGGAAG
GCACCTTTCTCC
back to top

protein sequence of SMED30014002-orf-1

>SMED30014002-orf-1 ID=SMED30014002-orf-1|Name=SMED30014002-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=2217bp
MATPKTYVYSFEHLKVLICSYSMELFNHLIKQARSNGLIYTGDLEIVSHK
VHNRSSCNCREILKAAVEKFNNKFKTFEKVILPLEILELDQANAYLFVCE
VHQSHKLPSSKLRIINITIKNGSNAQQNKSLVDKPKHCLLKLYKILNEEI
WIRKDSLGRNNSFNGGKSLVYKECFKEISRELASKGALPGDLSQKCIYSR
DNNRCWFDYCRLMDICIHHKLTAREIADIIKHLAAVDPMQPDPVICIKNK
FENSESHNNYKNLSEPSESENESLSESGNSFTNSLDSSSSMSELLVYKTN
RIEATKNRSSKYKFNDSAHRNKKHSKSKTTVKQTQTFDSSPVGPQADRRN
CRCFKLSPVRQSQFPSKSNDLESQSYLWSPDNEFEYFPTLDDKKDFYDDG
GHEYSTYDNRQYQPVKGIIRRNNTYHNLDSDHYGEFAGDQFDEEEYDPGI
YEDFIRQTGISDTEDICIPGNYNESDRQSFYEGSNLNFKFIPNQASKFSG
TSERRAPSHKTVFLRPVDKGNNVPRTRSSSQPMLPTKCKTYKLLSNTNNS
QKPSAEFGDNSQANKLECKINTVNSSTQTFQKSQSLEDVEIIKLKKFASD
SALCVKTADCQTNTNKPNEENEINDPSLQGLGVKMYKGEAVQTDSPPSDL
SGNISASIRSSSQQMQYGDPNSIFNPKWINKHKSVLNEHNICFQHHSTKA
HLKALCNSSQAWSENVERKFRENPFAYTVNRNANNHSLSRSASSRNSQIV
EIENESVDKVSSVLVEADSRSIILFREYQHERFNDRNKVTSNSRSPFFEI
GSTPSMSSNCRFNTNINNAIKNVTVSNQAHQARPYLGLKIYKCPVPGCRN
LTEDTNYSCPSHTVPLSPDSSCSPERCLSRLSCIVGLNKQILENPDIDRH
NSVHINALHNAIYGPYNDEDCSRVLGMGSQKLHKKPSAPIQSEYVNNDSQ
YLLSLNDPNRRFCNRHDSPHLINPNHISQPLVQPSYSATKFSQQSLCECY
DLQSRKYILQEIQDLHNPASIAYQPPIGETVLPLPATSIRDCRSAKLSSC
PKQTKENTQNNEFPAVIMNPSKICILSQTHPNFNEQFRYNKYSPCGRRIP
VNLQLCPIEGCLNLTCTNSPPCLNSEYHDSFQPGKNYLNYNLTSPLNRNV
SDWVCCKPLTGTRMPVPANCEVILDEELEEEPTIDFVSQAPSDDPKKYAS
KANQIRSVSANSNSLQHKASNASKRSQIPNARVSSRKYDLLSGQTAEPSN
TTSIKHVSSHHSTTNTLENYRPSSIRASVTSEMNEAESLKLPPDKLSNKR
VDDVDSNVNHTSESRFLLQKDPNIERLSKSYLVNHTFSKETEERNDVSKH
PQSQTEENNKSLYNSKSQSDLSSRTLPASPQRVSRVRNIEPDYTVEKLSK
QFVTMSHNESFSPVSIFTNLTDDKSKISHIFLVEPPDYQLNDSRILETEK
LPTGLLIQSDPEVLETYLQSEVDNIELNTSRIKETSFDLSTMTSVKDAKD
NFAELLANIEEETDGRTVYNLLVNPMELDTRLQNESAISNINKLVNVSET
EKQITTEGPPVIKNYAKQPSFSEVKELITTKPSVDILPRIDDLNKRISNQ
IASHRGSLVTEVSLFERSSYSKSHANPSTESIIQQNPFITSISPFHNNET
SIGGNVLLNDCKTKDLRTSQASPKGQLTSTLFKNKIDSKSTSKLNKKPLN
INSPKIKSNKRDLNSPNIDTFRELNRTPNSANQWKNISVFNQRFKPPNPL
PKPSEDPCIKGSNIYSYALEIDVGKTFVGSESPYFTCKLGKSINNSSNIK
LVSTKSNQNLNSDKVLFQSILATNALTAKSSSFVPCDVENNFAHRNYNIF
FSTPDLIFNNFKFIITPEKFRLKSNLALEYCEPNSDSLAAVVDQPTNTQN
SLSTAYVTIQTCNHTTPLVTVSQNISKTKKSKMRKLFRSFKSTKSQKQQF
YCVQNEQKSEKTNKFLKTIFLLELKTKMMSFIKKYKNKGANESDKSQITS
SDIEILVNDSESYSYFTDNLMIGVHGDKVSQNINLSKCNLWTRSCCDLHI
RSRRKNKELCFKKIKKRSFSEPAIENTYKTRFDSNTLFRTSSMTYSEIPT
SGLSLLCFEVLEKMERKLGRNPRLVEQLAARKFIESVDLWSQSSKDTLKL
ISRALHYLHGNPLDDSRQSNKTLDSVSSIRTCSADCIESISSLRQQIIRP
IISTDTVISAYNKYLS*
back to top
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000074oocyte
PLANA:0000231vitelline gland
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 1492..1515
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 257..285
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1689..1713
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 308..344
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1337..1388
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1354..1382
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1288..1307
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1209..1285
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1337..1353
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1209..1307