Retrotransposable element
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30013953 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 5
Homology
BLAST of Retrotransposable element vs. Ensembl Zebrafish
Match: BX546500.1 (pep chromosome:GRCz11:23:12926092:12931693:-1 gene:ENSDARG00000086495.3 transcript:ENSDART00000122176.3 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:BX546500.1) HSP 1 Score: 65.0846 bits (157), Expect = 6.879e-10 Identity = 42/142 (29.58%), Postives = 74/142 (52.11%), Query Frame = 1 Query: 2356 VLQKISEVKLKIN-QKNIKY*SELRFLGHIINKVGIQIDQSKIEAIKSF*IPKCVKNLRSFLGICNYYWRFIKDYSKKVEGFSKFMVRIMIR*Y--GMKTVLEKMK----LGQILVFQDFKK*MILYTDASFVTFGTVLSQK 2760 VLQ++ E L + +K + + ++FLGHI++ G+++D KI+A+ + P K L+ FLG N+Y RFI+++S+ + M + + K+K IL+ D + ++ DAS V G +LSQ+ Sbjct: 671 VLQRLLENGLYVKAEKCVFHAQSVQFLGHIVSVEGMRMDPEKIQAVVDWPTPDSRKALQRFLGFANFYRRFIRNFSQLAAPLTSLTSSKMPFRWSSAAEAAFSKLKGCFVSAPILIAPDPSRQFVVEVDASEVGVGAILSQR 812
BLAST of Retrotransposable element vs. Ensembl Zebrafish
Match: BX511082.1 (pep chromosome:GRCz11:9:14291932:14297132:1 gene:ENSDARG00000113678.1 transcript:ENSDART00000183119.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:BX511082.1) HSP 1 Score: 62.3882 bits (150), Expect = 4.743e-9 Identity = 41/142 (28.87%), Postives = 75/142 (52.82%), Query Frame = 1 Query: 2356 VLQKISEVKLKIN-QKNIKY*SELRFLGHIINKVGIQIDQSKIEAIKSF*IPKCVKNLRSFLGICNYYWRFIKDYSKKVEGFSKFM-VRIMIR*YGMKTV-LEKMK----LGQILVFQDFKK*MILYTDASFVTFGTVLSQK 2760 VLQ++ E L + +K + + + FLGHI++ G+++D K++A+ + P K L+ FLG N+Y RFI+++S+ + ++ R V +++K IL+ D + ++ DAS V G +LSQ+ Sbjct: 697 VLQRLLENGLYVKAEKCVFHAQSVPFLGHIVSVEGMRMDPEKVQAVVDWPTPDSRKALQRFLGFANFYRRFIRNFSQLAAPLTALTSLKTPFRWSNAAQVAFDRLKSCFVSAPILIAPDPSRQFVVEVDASEVGVGAILSQR 838
BLAST of Retrotransposable element vs. Ensembl Zebrafish
Match: BX511224.1 (pep chromosome:GRCz11:2:18017000:18022765:1 gene:ENSDARG00000113243.1 transcript:ENSDART00000186877.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:BX511224.1) HSP 1 Score: 62.3882 bits (150), Expect = 5.429e-9 Identity = 41/142 (28.87%), Postives = 73/142 (51.41%), Query Frame = 1 Query: 2356 VLQKISEVKLKIN-QKNIKY*SELRFLGHIINKVGIQIDQSKIEAIKSF*IPKCVKNLRSFLGICNYYWRFIKDYSKKVEGFSKFMVRIMIR*Y--GMKTVLEKMK----LGQILVFQDFKK*MILYTDASFVTFGTVLSQK 2760 VLQ++ E L + +K + + ++FLGHI++ G+++D KI+A+ ++ P K L+ FLG N+Y RFI ++S+ + + + K+K IL+ D + ++ DAS V G +LSQ+ Sbjct: 697 VLQRLLENGLYVKAEKCVFHAQSVQFLGHIVSVEGMRMDPEKIQAVVNWPTPDSRKALQRFLGFANFYRRFIHNFSQLAAPLTSLTSSKTPFRWSSAAEAAFSKLKGCFVSAPILIAPDPSRQFVVEVDASEVGVGAILSQR 838
BLAST of Retrotransposable element vs. Ensembl Zebrafish
Match: CR855320.1 (pep chromosome:GRCz11:1:7956030:7961696:1 gene:ENSDARG00000099359.2 transcript:ENSDART00000159655.2 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CR855320.1) HSP 1 Score: 62.003 bits (149), Expect = 6.538e-9 Identity = 41/142 (28.87%), Postives = 73/142 (51.41%), Query Frame = 1 Query: 2356 VLQKISEVKLKIN-QKNIKY*SELRFLGHIINKVGIQIDQSKIEAIKSF*IPKCVKNLRSFLGICNYYWRFIKDYSKKVEGFSKFMVRIMIR*Y--GMKTVLEKMK----LGQILVFQDFKK*MILYTDASFVTFGTVLSQK 2760 VLQ++ E L + +K + + + FLGHI++ G+++D KI+A+ ++ P K L+ FLG N+Y RFI+++S+ + + + K+K IL+ D + ++ DAS V G +LSQ+ Sbjct: 699 VLQRLLENGLYVKAEKCVFHAQSVPFLGHIVSVEGLRMDPEKIKAVVNWPTPDSRKALQRFLGFANFYRRFIRNFSQLAAPLTALTSSKTPFRWSSAAEAAFSKLKGCFVSAPILITPDPSRQFVVEVDASEVGVGAILSQR 840
BLAST of Retrotransposable element vs. Ensembl Zebrafish
Match: FO704673.1 (pep chromosome:GRCz11:12:14545475:14551077:-1 gene:ENSDARG00000112601.1 transcript:ENSDART00000188717.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:FO704673.1) HSP 1 Score: 61.6178 bits (148), Expect = 8.511e-9 Identity = 29/77 (37.66%), Postives = 52/77 (67.53%), Query Frame = 1 Query: 2353 TVLQKISEVKLKINQKNIKY*-SELRFLGHIINKVGIQIDQSKIEAIKSF*IPKCVKNLRSFLGICNYYWRFIKDYS 2580 TVL ++ E +L + ++ S+ FLG+II+ G++++ +K++A+ + +PK VK L+ FLG N+Y RFI++YS Sbjct: 675 TVLTRLQENQLYAKLEKCEFHMSKTSFLGYIISHHGVEMNNTKVQAVTGWPLPKTVKELQRFLGFANFYRRFIRNYS 751
BLAST of Retrotransposable element vs. Ensembl Xenopus
Match: ENSXETT00000031144.1 (pep primary_assembly:Xenopus_tropicalis_v9.1:8:63282574:63284044:1 gene:ENSXETG00000009810.1 transcript:ENSXETT00000031144.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 68.9366 bits (167), Expect = 3.376e-11 Identity = 37/135 (27.41%), Postives = 66/135 (48.89%), Query Frame = 1 Query: 2416 SELRFLGHIINKVGIQIDQSKIEAIKSF*IPKCVKNLRSFLGICNYYWRFIKDYSKKVEGFSKFMVRIMIR*YGMK--------------------TVLEKMKLGQILVFQDFKK*MILYTDASFVTFGTVLSQK 2760 S + ++GH+++ GI D +KIEA+ ++ P+ V LRSFLG C YY RF++ YS+ ++ + + G K + +++ +L + D + +L+ DAS+ G VL Q+ Sbjct: 10 SSVTYVGHVVSTEGIGTDPAKIEAVVTWPKPQNVTELRSFLGFCGYYRRFVEGYSRVAHPLNELLRLSNVHGEGTKRDAKAPFGDKWTSACEGAFVQLKKRLTEAPVLAYADAHRPYVLHVDASYEGLGGVLHQR 144
BLAST of Retrotransposable element vs. Ensembl Xenopus
Match: ENSXETT00000035618.1 (pep primary_assembly:Xenopus_tropicalis_v9.1:2:3692667:3694042:1 gene:ENSXETG00000010959.1 transcript:ENSXETT00000035618.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 68.5514 bits (166), Expect = 3.753e-11 Identity = 32/86 (37.21%), Postives = 53/86 (61.63%), Query Frame = 1 Query: 2356 VLQKISEVKLKINQKNIKY*-SELRFLGHIINKVGIQIDQSKIEAIKSF*IPKCVKNLRSFLGICNYYWRFIKDYSKKVEGFSKFM 2610 VL ++ + LK++ K+ S + ++GH+++ GI D SKIEA+ S+ P+ + LRSFLG C YY RF++ +SK S+ + Sbjct: 3 VLDRLEKEGLKLSLDKCKFFQSSVTYVGHVVSAEGISTDPSKIEAVTSWPRPRTITELRSFLGFCGYYRRFVEGFSKTARPLSQLL 88
BLAST of Retrotransposable element vs. Ensembl Xenopus
Match: anxa6 (annexin A6 [Source:Xenbase;Acc:XB-GENE-989741]) HSP 1 Score: 69.3218 bits (168), Expect = 4.018e-11 Identity = 49/156 (31.41%), Postives = 74/156 (47.44%), Query Frame = 1 Query: 2416 SELRFLGHIINKVGIQIDQSKIEAIKSF*IPKCVKNLRSFLGICNYYWRFIKDYSKKVEGFSKFMVRIMIR--------*YGMKTVLEKMKLGQILVFQDFKK*MILYTDASFVTFGTVLSQ-KIYGIWIAKNDYERCDYIARKDLL*KEMFVRTI 2856 +E+++LGH + ++ D +K+EAI + IPK K + +FLG YY +FI +YS + + R R M + + + +L DF + IL TDAS G VLSQ YG + Y++RK LL +E TI Sbjct: 530 AEVQYLGHRVGGGQLRPDPAKVEAICQWPIPKTQKQVLAFLGTSGYYRKFIPNYSTVAKPLTDLTSRQRSRTIVWTPECESAMNALKQALASSPVLAAPDFSRRFILQTDASNFGLGAVLSQVNTYG------EEHPVAYLSRK-LLPREAAYATI 678
BLAST of Retrotransposable element vs. Ensembl Xenopus
Match: ENSXETT00000006041.1 (pep primary_assembly:Xenopus_tropicalis_v9.1:6:37317867:37322724:1 gene:ENSXETG00000003070.1 transcript:ENSXETT00000006041.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 66.6254 bits (161), Expect = 3.165e-10 Identity = 47/162 (29.01%), Postives = 74/162 (45.68%), Query Frame = 1 Query: 2365 KISEVKLKINQKNIKY*SELRFLGHIINKVGIQIDQSKIEAIKSF*IPKCVKNLRSFLGICNYYWRFIKDYSK-------------KVEGFSKFMVRIMIR*YG-MKTVLEK----------------MKLGQILVFQDFKK*MILYTDASFVTFGTVLSQK 2760 K+S K + Q ++ Y +GH+++ GI D SKIEA+ S+ P+ + LRSFLG C YY RF+K +SK +VEG + ++ +R G + +E + +L + D K L+ DAS G +L Q+ Sbjct: 509 KLSPEKCQFCQPSVNY------VGHVVSAEGIATDPSKIEAVSSWPKPRTITELRSFLGFCGYYRRFVKGFSKVAQPLNQLLQSNTEVEGSDRDILAKRLRGQGWTRESIEDFWTEECDKAFDQLKYCLTHAPVLAYADATKPYTLHIDASREGLGGILYQE 664
BLAST of Retrotransposable element vs. Ensembl Xenopus
Match: ENSXETT00000024810.1 (pep primary_assembly:Xenopus_tropicalis_v9.1:KV464121.1:1437:3201:1 gene:ENSXETG00000014958.1 transcript:ENSXETT00000024810.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 61.6178 bits (148), Expect = 2.193e-9 Identity = 41/143 (28.67%), Postives = 69/143 (48.25%), Query Frame = 1 Query: 2356 VLQKISEVKLKINQKNIKY*-SELRFLGHIINKVGIQIDQSKIEAIKSF*IPKCVKNLRSFLGICNYYWRFIKDYSKKVEGF----SKFMVRIMIR*YGMKTVLEKMKL----GQILVFQDFKK*MILYTDASFVTFGTVLSQ 2757 VL++I + L + + +E+++LGH + + + +K+E I ++ P K + +FLG YY RFI +YS + SK R++ T + +K +L DF + I++TDAS G VLSQ Sbjct: 59 VLERIRQAGLTLKPGKCHFGMAEVQYLGHRVGSGRVMPEPAKVEVIVNWPTPTTQKQVLAFLGTAGYYRRFIPNYSAIAKPLTDLTSKRRPRVVTWTPECATAMSALKSALVNAPVLYAPDFSRGFIVHTDASTYGIGAVLSQ 201 HSP 2 Score: 22.7126 bits (47), Expect = 2.193e-9 Identity = 8/24 (33.33%), Postives = 15/24 (62.50%), Query Frame = 2 Query: 2312 IFTNTMEKHYKLLERCCRKFQRLN 2383 IF+NT E+H + L+R + ++ Sbjct: 44 IFSNTWEEHVQHLQRVLERIRQAG 67
BLAST of Retrotransposable element vs. UniProt/SwissProt
Match: sp|P04323|POL3_DROME (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 1.010e-11 Identity = 52/167 (31.14%), Postives = 89/167 (53.29%), Query Frame = 1 Query: 2329 GETL*TAGTVLQKISEVKLKINQKNIKY*-SELRFLGHIINKVGIQIDQSKIEAIKSF*IPKCVKNLRSFLGICNYYWRFIKDYSKKVEGFSKFM---VRIMIR*YGMKTVLEKMKL----GQILVFQDFKK*MILYTDASFVTFGTVLSQKIYGI-WIAK--NDYE 2796 E L + G V +K+++ LK+ ++ E FLGH++ GI+ + KIEAI+ + IP K +++FLG+ YY +FI +++ + +K + ++I + +K+K IL DF K L TDAS V G VLSQ + + +I++ N++E Sbjct: 376 DEHLQSLGLVFEKLAKANLKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYRKFIPNFADIAKPMTKCLKKNMKIDTTNPEYDSAFKKLKYLISEDPILKVPDFTKKFTLTTDASDVALGAVLSQDGHPLSYISRTLNEHE 542
BLAST of Retrotransposable element vs. UniProt/SwissProt
Match: sp|P20825|POL2_DROME (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.679e-11 Identity = 57/169 (33.73%), Postives = 88/169 (52.07%), Query Frame = 1 Query: 2356 VLQKISEVKLKINQKNIKY*S-ELRFLGHIINKVGIQIDQSKIEAIKSF*IPKCVKNLRSFLGICNYYWRFIKDY---SKKVEGFSKFMVRIMIR*YGMKTVLEKMKL----GQILVFQDFKK*MILYTDASFVTFGTVLSQKIYGI-WIAK--NDYERCDYIARKDLL 2829 V K+++ LK+ ++ E FLGHI+ GI+ + K++AI S+ IP K +R+FLG+ YY +FI +Y +K + K +I + EK+K IL DF+K +L TDAS + G VLSQ + I +I++ ND+E K+LL Sbjct: 384 VFTKLADANLKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYRKFIPNYADIAKPMTSCLKKRTKIDTQKLEYIEAFEKLKALIIRDPILQLPDFEKKFVLTTDASNLALGAVLSQNGHPISFISRTLNDHELNYSAIEKELL 552
BLAST of Retrotransposable element vs. UniProt/SwissProt
Match: sp|Q8I7P9|POL5_DROME (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 6.068e-10 Identity = 48/156 (30.77%), Postives = 76/156 (48.72%), Query Frame = 1 Query: 2356 VLQKISEVKLKIN-QKNIKY*SELRFLGHIINKVGIQIDQSKIEAIKSF*IPKCVKNLRSFLGICNYYWRFIKDYSKKVEGFSKFM--------------VRIMIR*YGMKTVLEKMKL---GQILVFQDFKK*MILYTDASFVTFGTVLSQKIYG 2769 VL +S+ L++N +K+ +++ FLG+I+ GI+ D K+ AI P VK L+ FLG+ +YY +FI+DY+K + + V I + +++ + + +IL F F K L TDAS G VLSQ G Sbjct: 301 VLASLSKANLQVNLEKSHFLDTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYRKFIQDYAKVAKPLTNLTRGLYANIKSSQSSKVPITLDETALQSFNDLKSILCSSEILAFPCFTKPFHLTTDASNWAIGAVLSQDDQG 456
BLAST of Retrotransposable element vs. UniProt/SwissProt
Match: sp|P10401|POLY_DROME (Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 6.141e-10 Identity = 50/168 (29.76%), Postives = 86/168 (51.19%), Query Frame = 1 Query: 2314 FYEYNGETL*TAGTVLQKISEVKLKINQKNIKY*SE-LRFLGHIINKVGIQIDQSKIEAIKSF*IPKCVKNLRSFLGICNYYWRFIKDYSKKVE-----------GFSKFMVRIMIR*YG--MKTVLEKMK--LGQ---ILVFQDFKK*MILYTDASFVTFGTVLSQK 2760 F E + + TVL+ + + ++++Q+ ++ E + +LG I++K G + D K++AI+ + P CV +RSFLG+ +YY FIKD++ SK M + + + + ++++ L IL + DFKK L TDAS G VLSQ+ Sbjct: 346 FSENESDHVRHIDTVLKCLIDANMRVSQEKTRFFKESVEYLGFIVSKDGTKSDPEKVKAIQEYPEPDCVYKVRSFLGLASYYRVFIKDFAAIARPITDILKGENGSVSKHMSKKIPVEFNETQRNAFQRLRNILASEDVILKYPDFKKPFDLTTDASASGIGAVLSQE 513
BLAST of Retrotransposable element vs. UniProt/SwissProt
Match: sp|P10394|POL4_DROME (Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster OX=7227 GN=POL PE=4 SV=1) HSP 1 Score: 60.8474 bits (146), Expect = 1.065e-7 Identity = 47/145 (32.41%), Postives = 67/145 (46.21%), Query Frame = 1 Query: 2356 VLQKISEVKLKINQKNIKY*-SELRFLGHIINKVGIQIDQSKIEAIKSF*IPKCVKNLRSFLGICNYYWRFIK---DYSKKVEGFSKFMVRIMIR*YGMKTVLE-KMKL--GQILVFQDFKK*MILYTDASFVTFGTVLSQKIYG 2769 V K E LK++ + + E+ FLGH GI D K + I+++ +P + R F+ CNYY RFIK DYS+ + K V K + K +L +L + DF K + TDAS G VL+Q G Sbjct: 493 VFGKCREYNLKLHPEKCSFFMHEVTFLGHKCTDKGILPDDKKYDVIQNYPVPHDADSARRFVAFCNYYRRFIKNFADYSRHITRLCKKNVPFEWTDECQKAFIHLKSQLINPTLLQYPDFSKEFCITTDASKQACGAVLTQNHNG 637
BLAST of Retrotransposable element vs. TrEMBL
Match: F1AGB5 (Pol polyprotein (Fragment) OS=Schmidtea mediterranea OX=79327 PE=2 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 2.548e-18 Identity = 48/81 (59.26%), Postives = 59/81 (72.84%), Query Frame = 1 Query: 2350 GTVLQKISEVKLKINQKNIKY*-SELRFLGHIINKVGIQIDQSKIEAIKSF*IPKCVKNLRSFLGICNYYWRFIKDYSKKV 2589 G VL+ I E L+IN + + E+RFLGHII+K G+Q D SKI+AI++F P CVK LRSFLGICNYY RFI DY+KK Sbjct: 51 GEVLKAIKEAGLRINPEKCQIIKEEIRFLGHIISKEGVQTDPSKIQAIQNFGKPNCVKKLRSFLGICNYYRRFISDYAKKA 131
BLAST of Retrotransposable element vs. TrEMBL
Match: A0A1B6J823 (Reverse transcriptase domain-containing protein (Fragment) OS=Homalodisca liturata OX=320908 GN=g.54585 PE=4 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 1.873e-15 Identity = 53/145 (36.55%), Postives = 78/145 (53.79%), Query Frame = 1 Query: 2356 VLQKISEVKLKINQKNIKY*S-ELRFLGHIINKVGIQIDQSKIEAIKSF*IPKCVKNLRSFLGICNYYWRFIKDYS---KKVEGFSKFMVRIMIR*YGMKTVLEKMKL---GQILVFQDFKK*MILYTDASFVTFGTVLSQKIYG 2769 VL+K+ E L + + + E+ +LGH+I K G++ D +K+ A++ F +PK VKN+RSFLG+ YY RFI ++ K + +K + K E + +LVF DF K IL TDAS G VLSQ + G Sbjct: 48 VLEKLREANLSVQLSKCNFMAAEVNYLGHVITKRGVEPDPNKVSAVRDFPVPKTVKNVRSFLGLAGYYRRFIAGFATIGKPLFDLTKQGCEFIWTPECQKAFDELKHMLISAPVLVFPDFTKQFILSTDASTQALGAVLSQVVDG 192
BLAST of Retrotransposable element vs. TrEMBL
Match: A0A3Q0JL77 (uncharacterized protein LOC108254503 OS=Diaphorina citri OX=121845 GN=LOC108254503 PE=4 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 1.967e-14 Identity = 63/173 (36.42%), Postives = 94/173 (54.34%), Query Frame = 1 Query: 2356 VLQKISEVKLKINQKNIKY*-SELRFLGHIINKVGIQIDQSKIEAIKSF*IPKCVKNLRSFLGICNYYWRFIKDYSKKVEGFSKFM---VRIMIR*YGMKTVLEKMKL----GQILVFQDFKK*MILYTDASFVTFGTVLSQKIYG----IWIAK---NDYERCDYIARKDLL 2829 VL ++ + LKI ++ E+ +LGH++ + G++ + +KI AIKS+ IP+ VK ++ FLG+ YY RFIKD+++ + +K + +I I K EK K+ +L + DF K IL TDAS V G VLSQ + G I A ND ER K+LL Sbjct: 407 VLTRLRDSNLKIQLDKSEFLRKEVEYLGHVVTEEGVKPNPTKINAIKSYPIPRTVKQIKGFLGLLGYYRRFIKDFARLTKPLTKCLKKDAKIDITDVEYKDCFEKCKIILANEPVLQYPDFSKPFILTTDASNVALGAVLSQGVLGQDKPIAFASRTLNDSERNYSTIEKELL 579
BLAST of Retrotransposable element vs. TrEMBL
Match: A0A3B5QL73 (Uncharacterized protein OS=Xiphophorus maculatus OX=8083 PE=4 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 3.080e-14 Identity = 64/190 (33.68%), Postives = 92/190 (48.42%), Query Frame = 1 Query: 2356 VLQKISEVKLKINQKNIK-Y*SELRFLGHIINKVGIQIDQSKIEAIKSF*IPKCVKNLRSFLGICNYYWRFIKDYSKKVEGFSKFMVR-IMIR*YGMKTV---------------------------LEKMKLGQILVFQDFKK*MILYTDASFVTFGTVLSQKIYG----IWIAKNDYERCD--YIARK 2820 VL ++ E LK++ K K Y + +R+LGHI+++ GI+ D K+ A+K++ P +K LR+FLG C YY RFIKDYSK V+ ++ +R + TV +EK+ IL F D K IL+TDAS G L Q+ G I A +C+ Y A K Sbjct: 397 VLNRLKEFGLKLSPKKCKFYQTSVRYLGHIVSEKGIETDPDKVAALKTWPKPNNLKELRTFLGFCGYYRRFIKDYSKIVKPLNELTAGYPPLRKHAKTTVNPEKYFNPKDGFGDRWTLACQTAFDTIIEKLTTAPILGFADPKLSYILHTDASTSGLGAALYQERQGQKRVIAYASRGLSKCESRYPAHK 586
BLAST of Retrotransposable element vs. TrEMBL
Match: A0A3Q0JG65 (uncharacterized protein LOC103518485 OS=Diaphorina citri OX=121845 GN=LOC103518485 PE=4 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 3.403e-14 Identity = 63/173 (36.42%), Postives = 94/173 (54.34%), Query Frame = 1 Query: 2356 VLQKISEVKLKINQKNIKY*-SELRFLGHIINKVGIQIDQSKIEAIKSF*IPKCVKNLRSFLGICNYYWRFIKDYSKKVEGFSKFM---VRIMIR*YGMKTVLEKMKL----GQILVFQDFKK*MILYTDASFVTFGTVLSQKIYG----IWIAK---NDYERCDYIARKDLL 2829 VL ++ + LKI ++ E+ +LGH++ + G++ + +KI AIKS+ IP+ VK ++ FLG+ YY RFIKD+++ + +K + +I I K EK K+ +L + DF K IL TDAS V G VLSQ + G I A ND ER K+LL Sbjct: 37 VLTRLRDSNLKIQLDKSEFLRKEVEYLGHVVTEEGVKPNPTKINAIKSYPIPRTVKQIKGFLGLLGYYRRFIKDFARLTKPLTKCLKKDAKIDITDVEYKDCFEKCKIILANEPVLQYPDFSKPFILTTDASNVALGAVLSQGVLGQDKPIAFASRTLNDSERNYSTIEKELL 209 HSP 2 Score: 90.5077 bits (223), Expect = 3.403e-14 Identity = 63/173 (36.42%), Postives = 94/173 (54.34%), Query Frame = 1 Query: 2356 VLQKISEVKLKINQKNIKY*-SELRFLGHIINKVGIQIDQSKIEAIKSF*IPKCVKNLRSFLGICNYYWRFIKDYSKKVEGFSKFM---VRIMIR*YGMKTVLEKMKL----GQILVFQDFKK*MILYTDASFVTFGTVLSQKIYG----IWIAK---NDYERCDYIARKDLL 2829 VL ++ + LKI ++ E+ +LGH++ + G++ + +KI AIKS+ IP+ VK ++ FLG+ YY RFIKD+++ + +K + +I I K EK K+ +L + DF K IL TDAS V G VLSQ + G I A ND ER K+LL Sbjct: 799 VLTRLRDSNLKIQLDKSEFLRKEVEYLGHVVTEEGVKPNPTKINAIKSYPIPRTVKQIKGFLGLLGYYRRFIKDFARLTKPLTKCLKKDAKIDITDVEYKDCFEKCKIILANEPVLQYPDFSKPFILTTDASNVALGAVLSQGVLGQDKPIAFASRTLNDSERNYSTIEKELL 971 HSP 3 Score: 90.5077 bits (223), Expect = 3.403e-14 Identity = 63/173 (36.42%), Postives = 94/173 (54.34%), Query Frame = 1 Query: 2356 VLQKISEVKLKINQKNIKY*-SELRFLGHIINKVGIQIDQSKIEAIKSF*IPKCVKNLRSFLGICNYYWRFIKDYSKKVEGFSKFM---VRIMIR*YGMKTVLEKMKL----GQILVFQDFKK*MILYTDASFVTFGTVLSQKIYG----IWIAK---NDYERCDYIARKDLL 2829 VL ++ + LKI ++ E+ +LGH++ + G++ + +KI AIKS+ IP+ VK ++ FLG+ YY RFIKD+++ + +K + +I I K EK K+ +L + DF K IL TDAS V G VLSQ + G I A ND ER K+LL Sbjct: 1561 VLTRLRDSNLKIQLDKSEFLRKEVEYLGHVVTEEGVKPNPTKINAIKSYPIPRTVKQIKGFLGLLGYYRRFIKDFARLTKPLTKCLKKDAKIDITDVEYKDCFEKCKIILANEPVLQYPDFSKPFILTTDASNVALGAVLSQGVLGQDKPIAFASRTLNDSERNYSTIEKELL 1733
BLAST of Retrotransposable element vs. Ensembl Cavefish
Match: ENSAMXT00000039384.1 (pep primary_assembly:Astyanax_mexicanus-2.0:25:21146036:21149703:-1 gene:ENSAMXG00000035834.1 transcript:ENSAMXT00000039384.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 86.6557 bits (213), Expect = 1.459e-16 Identity = 55/198 (27.78%), Postives = 99/198 (50.00%), Query Frame = 1 Query: 2194 PKR*FIYLEE*INMTIKNLEYNDILRRFNSPWNIQLVCINFYEYNGETL*TAGTVLQKISEVKLKINQKNIKY*SELRFLGHIINKVGIQIDQSKIEAIKSF*IPKCVKNLRSFLGICNYYWRFIKDYSKKVEGFSKFMVRIMIR*Y------GMKTVLEKMKLGQILVFQDFKK*MILYTDASFVTFGTVLSQKIYG 2769 P+R ++L+ + + ++++E N+I+ R SPW +V V+ K +Q +++LGHII+ G+ +D +K EA++++ P V+ +RSF+G+ +YY RF+ +++ K + + + +T+ +K+ IL F D + IL TDAS V G +LSQKI G Sbjct: 3 PRRVPVHLQGEVAVHLQDMEKNNIISRSQSPWAAPVVL-----------------------VRKKDDQ--------VQYLGHIISAEGVAVDPAKTEAVQAWPEPVNVREVRSFVGLASYYRRFVSGFAELARPLHKLTEKGVSFKWTQECQTAFQTLKDKLVSAPILTFPDPGQTFILDTDASDVAIGAILSQKIDG 169
BLAST of Retrotransposable element vs. Ensembl Cavefish
Match: ENSAMXT00000049799.1 (pep primary_assembly:Astyanax_mexicanus-2.0:13:11833844:11837206:1 gene:ENSAMXG00000039473.1 transcript:ENSAMXT00000049799.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 82.0333 bits (201), Expect = 4.487e-15 Identity = 52/167 (31.14%), Postives = 85/167 (50.90%), Query Frame = 1 Query: 2356 VLQKISEVKLKINQKNIKY*-SELRFLGHIINKVGIQIDQSKIEAIKSF*IPKCVKNLRSFLGICNYYWRFIKDYSKKVEGFSKFMV------------RIMIR*YGMK----------------TVLEKMKLGQILVFQDFKK*MILYTDASFVTFGTVLSQKIYG 2769 VLQ++ E LK++ + ++ + +R+LGHI+++ G++ D KIEA+K++ PK +K LRSFLG YY RFI+D+SK V+ + + R + K T++ K+ +L + + K IL+TDAS G L Q+ G Sbjct: 510 VLQRLKEYGLKLSPEKCRFFQTSVRYLGHIVSRNGVETDPEKIEALKNWPNPKNLKELRSFLGFAGYYRRFIQDFSKIVKPLNDLTAGYGPTRKKCKAHDVKTRYFKPKEPFGSRWTESCQEAFDTIINKLTSAPVLAYANPKLPYILHTDASTTGLGAALYQEQNG 676
BLAST of Retrotransposable element vs. Ensembl Cavefish
Match: ENSAMXT00000051531.1 (pep primary_assembly:Astyanax_mexicanus-2.0:16:23481988:23484356:-1 gene:ENSAMXG00000035923.1 transcript:ENSAMXT00000051531.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 81.2629 bits (199), Expect = 5.082e-15 Identity = 50/156 (32.05%), Postives = 77/156 (49.36%), Query Frame = 1 Query: 2356 VLQKISEVKLKINQKNIKY*-SELRFLGHIINKVGIQIDQSKIEAIKSF*IPKCVKNLRSFLGICNYYWRFIKDYSKKVEGFSKFMVRIMIR*YGMK-------------TVLEKMKLG----QILVFQDFKK*MILYTDASFVTFGTVLSQKIYG 2769 V ++S+ LK+ K S +++LGH+++ GI D K+ A++ + +PK + LR+FLG+ YY RF+K +S+ + + I+ K T E +K G +L F DF +LYTDAS G VLSQK G Sbjct: 52 VFSRLSQQGLKLKPDKCKLLRSSVQYLGHVVSDAGIAPDPDKVTAVQQWRVPKFITELRAFLGLAGYYRRFVKGFSQTAAPLHRLLGGHSIKKSKAKALCPPWKWANECETAFESLKQGLVQAPVLAFADFTLPFLLYTDASHRGLGAVLSQKQDG 207
BLAST of Retrotransposable element vs. Ensembl Cavefish
Match: ENSAMXT00000048059.1 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02001896.1:45492:48938:1 gene:ENSAMXG00000034382.1 transcript:ENSAMXT00000048059.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 80.4925 bits (197), Expect = 1.232e-14 Identity = 49/156 (31.41%), Postives = 76/156 (48.72%), Query Frame = 1 Query: 2356 VLQKISEVKLKINQKNIKY*-SELRFLGHIINKVGIQIDQSKIEAIKSF*IPKCVKNLRSFLGICNYYWRFIKDYSKKVEGFSKFMVRIMIR*YGMK-------------TVLEKMKLG----QILVFQDFKK*MILYTDASFVTFGTVLSQKIYG 2769 V ++S+ LK+ K S +++LGH+++ GI D K+ A++ + +PK + LR+FLG+ YY RF+K +S+ + + + K T E +K G +L F DF +LYTDAS G VLSQK G Sbjct: 313 VFSRLSQQGLKLKPDKCKLLRSSVQYLGHVVSDAGIAPDPDKVMAVQQWRVPKSITELRAFLGLAGYYRRFVKGFSQIAAPLHRLLGGHPTKKSKAKALCPPWKWSNECETAFESLKQGLVQAPVLAFADFTLPFLLYTDASHRGLGAVLSQKQDG 468
BLAST of Retrotransposable element vs. Ensembl Cavefish
Match: ENSAMXT00000048130.1 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02000027.1:9314169:9318317:-1 gene:ENSAMXG00000039110.1 transcript:ENSAMXT00000048130.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 79.7221 bits (195), Expect = 2.066e-14 Identity = 53/167 (31.74%), Postives = 82/167 (49.10%), Query Frame = 1 Query: 2356 VLQKISEVKLKINQKNIKY*SE-LRFLGHIINKVGIQIDQSKIEAIKSF*IPKCVKNLRSFLGICNYYWRFIKDYSKKVEGFSKFMVRIMIR*YGMK----------------------------TVLEKMKLGQILVFQDFKK*MILYTDASFVTFGTVLSQKIYG 2769 VLQ++ E LK++ + K+ + +R+LGHI++ G++ D KI +K++ PK +K LRSFLG YY RFI+D+SK V+ ++ + G K TV+ K+ +L F + IL+TDAS V G L Q+ G Sbjct: 362 VLQRLKEYGLKLSPEKCKFFQKSVRYLGHIVSSDGVKTDPEKIAVLKNWPSPKNLKELRSFLGFAGYYRRFIRDFSKIVKPLNELTAGYAPKRKGCKLTKSQNQYYKPKELFGDRWTENCQEAFDTVIAKLTSAPVLGFANPSLPYILHTDASTVGLGAALYQEQDG 528
BLAST of Retrotransposable element vs. Ensembl Medaka
Match: ENSORLT00000033871.1 (pep primary_assembly:ASM223467v1:5:24767545:24770648:1 gene:ENSORLG00000024878.1 transcript:ENSORLT00000033871.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 85.5001 bits (210), Expect = 3.190e-16 Identity = 53/167 (31.74%), Postives = 86/167 (51.50%), Query Frame = 1 Query: 2356 VLQKISEVKLKINQKNIKY*-SELRFLGHIINKVGIQIDQSKIEAIKSF*IPKCVKNLRSFLGICNYYWRFIKDYSKKVEGFSKFMVRIMI------------------R*YGMK----------TVLEKMKLGQILVFQDFKK*MILYTDASFVTFGTVLSQKIYG 2769 VL ++ LK++ + K+ + +R+LGHI+++ G++ D K+EA+K++ +PK +K LRSFLG YY RFI+DYSK V+ + V +G + T++EK+ IL F + K +L+TDAS + G L Q+ G Sbjct: 359 VLNRLRAYGLKLSLEKCKFFQTSVRYLGHIVSQHGVETDPEKVEALKTWPVPKNLKELRSFLGFAGYYRRFIRDYSKIVKPLNDLTVGYPPLRKSCSRGANKEQYFHVKEPFGARWTQSCQEAFETIIEKLTTAPILAFANPKLPYVLHTDASTIGLGAALYQEQEG 525
BLAST of Retrotransposable element vs. Ensembl Medaka
Match: ENSORLT00000037716.1 (pep primary_assembly:ASM223467v1:20:9739400:9742664:-1 gene:ENSORLG00000027308.1 transcript:ENSORLT00000037716.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 79.337 bits (194), Expect = 2.118e-14 Identity = 39/127 (30.71%), Postives = 69/127 (54.33%), Query Frame = 1 Query: 2419 ELRFLGHIINKVGIQIDQSKIEAIKSF*IPKCVKNLRSFLGICNYYWRFIKDYSKKVEGFSKFMVRI-MIR*YGMKTVL-------------EKMKLGQILVFQDFKK*MILYTDASFVTFGTVLSQ 2757 E++FLGHI+++ G++ D K++A++ + IP +K +R+FLG+ YY RF+ ++ + +V I + G + ++ E + IL + DF K ++YTDAS G VL+Q Sbjct: 314 EVKFLGHIVDRSGVRPDPEKVKAVQDWPIPSTIKGVRAFLGLAGYYRRFVAGFANIARPLNSLLVGIPATKRSGTQRIVWTPDCKASFDALKEALTQAPILAYADFNKPFVVYTDASHHGLGAVLAQ 440
BLAST of Retrotransposable element vs. Ensembl Medaka
Match: ENSORLT00000034171.1 (pep primary_assembly:ASM223467v1:20:12459257:12462301:-1 gene:ENSORLG00000022683.1 transcript:ENSORLT00000034171.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 77.411 bits (189), Expect = 8.922e-14 Identity = 52/163 (31.90%), Postives = 81/163 (49.69%), Query Frame = 1 Query: 2353 TVLQKISEVKLKINQKNIKY*S-ELRFLGHIINKVGIQIDQSKIEAIKSF*IPKCVKNLRSFLGICNYYWRFIKDYSKKVEGFSKFM---VRIMIR*YGMKTVLE---KMKLGQILVFQDFKK*MILYTDASFVTFGTVLSQKIYGIWIAKNDYERCDYIARK 2820 TVLQ++ E +L + ++ + + RFLGH+++ G+Q+D +K++A+ + +P K L+ FLG N+Y RFI+ +S K VR + KT E + IL D K I+ DAS G VLSQ+ + N C Y +RK Sbjct: 278 TVLQRLLENQLYCKAEKCEFHTKQTRFLGHVVSPGGVQMDSAKVKAVLEWPVPSGRKQLQRFLGFANFYRRFIRGFSGVAAPLHKLTSAKVRFVWDEGADKTFTELKRRFSTAPILTQPDPSKQFIVEVDASESGVGAVLSQR-----ASDNKVHPCAYFSRK 435
BLAST of Retrotransposable element vs. Ensembl Medaka
Match: ENSORLT00000040077.1 (pep primary_assembly:ASM223467v1:11:4916397:4919081:1 gene:ENSORLG00000025268.1 transcript:ENSORLT00000040077.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 76.6406 bits (187), Expect = 1.439e-13 Identity = 47/167 (28.14%), Postives = 79/167 (47.31%), Query Frame = 1 Query: 2356 VLQKISEVKLKIN-QKNIKY*SELRFLGHIINKVGIQIDQSKIEAIKSF*IPKCVKNLRSFLGICNYYWRFIKDYSKKVEGFSKFMVRIMIR*YGMKT----------------------------VLEKMKLGQILVFQDFKK*MILYTDASFVTFGTVLSQKIYG 2769 VL K+ E LK++ +K + + +E+++LGH++++ G++ D KI + ++ +PK +K L+SFLG YY RF++ +S + MK ++EK+ +L F D +K L+TDAS G VL QK G Sbjct: 74 VLNKLKEFGLKLSLEKCVFFQTEVKYLGHVVSQEGVKTDPDKISTLLTWPVPKTLKELKSFLGFVGYYRRFVQGFSTITKPLHDLTAGYPPTQKNMKPLVKPGAYLDPKEPFRERWTPICQQAFNKIIEKLTTAPVLAFADPQKPYTLHTDASSTGLGAVLDQKHDG 240
BLAST of Retrotransposable element vs. Ensembl Medaka
Match: ENSORLT00000033726.1 (pep primary_assembly:ASM223467v1:14:24352555:24357012:-1 gene:ENSORLG00000024900.1 transcript:ENSORLT00000033726.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 75.8702 bits (185), Expect = 3.001e-13 Identity = 53/167 (31.74%), Postives = 86/167 (51.50%), Query Frame = 1 Query: 2356 VLQKISEVKLKIN-QKNIKY*SELRFLGHIINKVGIQIDQSKIEAIKSF*IPKCVKNLRSFLGICNYYWRFIKDYSKKVE-------GF--SKFMVRIMIR-------------------*YGMKTVLEKMKLGQILVFQDFKK*MILYTDASFVTFGTVLSQKIYG 2769 VL K+ E LK++ K I + + +++LGHI+++ G++ D KI A+ S+ +PK +K LRSFLG YY RF+K YS V+ G+ S+ + +I+ T+++K+ +L F D +K +L+TDA G VL Q+ G Sbjct: 489 VLNKLKEYGLKLSIDKCIFFQTSVKYLGHIVSQDGVRTDPEKISALTSWPVPKTLKELRSFLGFAGYYRRFVKGYSFIVKPLHDLTAGYPPSQKKQKPLIKKQEYHNPKEPFGGRWTVECQQAFDTIIQKLTSAPVLAFADPQKPYLLHTDACSTGLGAVLYQEHEG 655
BLAST of Retrotransposable element vs. Planmine SMEST
Match: SMESG000050587.1 (SMESG000050587.1) HSP 1 Score: 176.407 bits (446), Expect = 1.438e-85 Identity = 93/128 (72.66%), Postives = 102/128 (79.69%), Query Frame = 1 Query: 565 KKQ*FNVQNKDNLCFINSVLDILKFDKI*KDRERPTKYLPYLTELVNDFNDMPMKLYDIPIFEKKNPGLAINVLIYNSANPVNNGSTVMKHPCLNIIHRKKVTGVDPIYLLLIKEVKKY-FTAVNNLQ 945 KK NVQN DNLCFI SVL +LKFDKI KDR RP KYLPY+ +LV D NDMPMKL DIP FEKKNPGLAINV+IYN+ N + +MKHP LNIIHR KVTGVDPIYLLLIKE +KY +TAV NLQ Sbjct: 1506 KKAIVNVQNTDNLCFIYSVLGVLKFDKIKKDRNRPRKYLPYMNDLVYDPNDMPMKLCDIPTFEKKNPGLAINVMIYNNENFEDREELIMKHPYLNIIHRTKVTGVDPIYLLLIKEGEKYHYTAVTNLQ 1633 HSP 2 Score: 69.3218 bits (168), Expect = 1.438e-85 Identity = 35/60 (58.33%), Postives = 45/60 (75.00%), Query Frame = 3 Query: 3 QTKTFNPYPKFYNDYRAHLTQFNDDKISLFKSGVKRKCTMSSEIFEKINIKDIIRAGV*L 182 QT+T +PY KFYND++ HLTQF DK S+FK +KRK T+ SEI EKI IKD ++ G+ L Sbjct: 1305 QTQTSDPYLKFYNDHKNHLTQFYTDKKSMFKHSLKRKSTIKSEILEKIFIKDELQIGLEL 1364 HSP 3 Score: 69.3218 bits (168), Expect = 1.438e-85 Identity = 42/60 (70.00%), Postives = 47/60 (78.33%), Query Frame = 3 Query: 405 MVKIN*MEKIVEQTEL--RWELDRIIEVNFKITKVSNISR*S*HSYIFISKGLIVKKAIV 578 M KIN EKIVE+TEL W+++RIIEVNFK+TKVSNISR S HSYI K LI KKAIV Sbjct: 1453 MKKIN--EKIVERTELGSSWKINRIIEVNFKVTKVSNISRLSGHSYIQTPKALIGKKAIV 1510 HSP 4 Score: 48.521 bits (114), Expect = 1.438e-85 Identity = 29/63 (46.03%), Postives = 38/63 (60.32%), Query Frame = 2 Query: 245 VNIDRYNAKDIKLQ-----------QFMKQSKIEFGIQVEFEKD-ENKIICM*NRAVPMISTF 397 VNI RYN K+I L MK SK++FG+QVEFEKD E K++ + NRA + +TF Sbjct: 1386 VNIGRYNVKEIVLPFSLLEKLKITLNEMKHSKVQFGVQVEFEKDGELKVVSISNRAASVTTTF 1448 HSP 5 Score: 37.7354 bits (86), Expect = 1.438e-85 Identity = 16/24 (66.67%), Postives = 19/24 (79.17%), Query Frame = 1 Query: 172 GFNYSIVIAEPEIDYDLLRSHQVI 243 G S VI EPEI+YDLLRSH++I Sbjct: 1361 GLELSDVIVEPEIEYDLLRSHRII 1384 HSP 6 Score: 75.0998 bits (183), Expect = 2.095e-16 Identity = 50/110 (45.45%), Postives = 65/110 (59.09%), Query Frame = 1 Query: 565 KKQ*FNVQNKDNLCFINSVLDILKFDKI*KDRERPTKYLPYLTELVNDF-NDMPMKLYDIPIFEKKNP--GLAINVLIYNS--ANPVNNGSTVMKHPCLNIIHRKKVTGV 879 KK NV+N D+ CFI SVL ILK D + K+RER + Y ++ EL D D PM+L +IP FE+ N LAINV YN+ + +N+ V HP L +IHR K V Sbjct: 584 KKAIVNVKNTDHSCFIYSVLSILKRDIVLKNRERVSSYTTFMDELNYDLITDCPMRLCNIPKFERNNSDLNLAINVFEYNNTPSKQLNDIDYVPHHPHLALIHRTKKLAV 693 HSP 7 Score: 31.5722 bits (70), Expect = 2.095e-16 Identity = 16/41 (39.02%), Postives = 26/41 (63.41%), Query Frame = 3 Query: 456 WELDRIIEVNFKITKVSNISR*S*HSYIFISKGLIVKKAIV 578 W + +I E++F +T +SR + HS+I + L+ KKAIV Sbjct: 548 WRVVKIREIDFILTAYYPVSRLAGHSFIPTPESLVGKKAIV 588
BLAST of Retrotransposable element vs. Planmine SMEST
Match: SMESG000050587.1 (SMESG000050587.1) HSP 1 Score: 176.022 bits (445), Expect = 2.256e-85 Identity = 93/129 (72.09%), Postives = 102/129 (79.07%), Query Frame = 1 Query: 565 KKQ*FNVQNKDNLCFINSVLDILKFDKI*KDRERPTKYLPYLTELVNDFNDMPMKLYDIPIFEKKNPGLAINVLIYNSANPVNNGSTVMKHPCLNIIHRKKVTGVDPIYLLLIKEVKKY-FTAVNNLQK 948 KK NVQN DNLCFI SVL +LKFDKI KDR RP KYLPY+ +LV D NDMPMKL DIP FEKKNPGLAINV+IYN+ N + +MKHP LNIIHR KVTGVDPIYLLLIKE +KY +TAV NLQ Sbjct: 1526 KKAIVNVQNTDNLCFIYSVLGVLKFDKIKKDRNRPRKYLPYMNDLVYDPNDMPMKLCDIPTFEKKNPGLAINVMIYNNENFEDREELIMKHPYLNIIHRTKVTGVDPIYLLLIKEGEKYHYTAVTNLQS 1654 HSP 2 Score: 69.3218 bits (168), Expect = 2.256e-85 Identity = 42/60 (70.00%), Postives = 47/60 (78.33%), Query Frame = 3 Query: 405 MVKIN*MEKIVEQTEL--RWELDRIIEVNFKITKVSNISR*S*HSYIFISKGLIVKKAIV 578 M KIN EKIVE+TEL W+++RIIEVNFK+TKVSNISR S HSYI K LI KKAIV Sbjct: 1473 MKKIN--EKIVERTELGSSWKINRIIEVNFKVTKVSNISRLSGHSYIQTPKALIGKKAIV 1530 HSP 3 Score: 68.9366 bits (167), Expect = 2.256e-85 Identity = 35/60 (58.33%), Postives = 45/60 (75.00%), Query Frame = 3 Query: 3 QTKTFNPYPKFYNDYRAHLTQFNDDKISLFKSGVKRKCTMSSEIFEKINIKDIIRAGV*L 182 QT+T +PY KFYND++ HLTQF DK S+FK +KRK T+ SEI EKI IKD ++ G+ L Sbjct: 1325 QTQTSDPYLKFYNDHKNHLTQFYTDKKSMFKHSLKRKSTIKSEILEKIFIKDELQIGLEL 1384 HSP 4 Score: 48.521 bits (114), Expect = 2.256e-85 Identity = 29/63 (46.03%), Postives = 38/63 (60.32%), Query Frame = 2 Query: 245 VNIDRYNAKDIKLQ-----------QFMKQSKIEFGIQVEFEKD-ENKIICM*NRAVPMISTF 397 VNI RYN K+I L MK SK++FG+QVEFEKD E K++ + NRA + +TF Sbjct: 1406 VNIGRYNVKEIVLPFSLLEKLKITLNEMKHSKVQFGVQVEFEKDGELKVVSISNRAASVTTTF 1468 HSP 5 Score: 37.7354 bits (86), Expect = 2.256e-85 Identity = 16/24 (66.67%), Postives = 19/24 (79.17%), Query Frame = 1 Query: 172 GFNYSIVIAEPEIDYDLLRSHQVI 243 G S VI EPEI+YDLLRSH++I Sbjct: 1381 GLELSDVIVEPEIEYDLLRSHRII 1404 HSP 6 Score: 90.5077 bits (223), Expect = 4.989e-21 Identity = 60/134 (44.78%), Postives = 83/134 (61.94%), Query Frame = 1 Query: 565 KKQ*FNVQNKDNLCFINSVLDILKFDKI*KDRERPTKYLPYLTELVNDF-NDMPMKLYDIPIFEKKNP--GLAINVLIYNS--ANPVNNGSTVMKHPCLNIIHRKKVTGVDPIYLLLIKEVKKY-FTAVNNLQK 948 KK NV+N D+ CFI SVL ILK D + K+RER + Y ++ EL D D PM+L +IP FE+ N LAINV YN+ + +N+ V HP L +IHR KV G +PI LLL+++ + +TA+ NL + Sbjct: 616 KKAIVNVKNTDHSCFIYSVLSILKRDIVLKNRERVSSYTTFMDELNYDLITDCPMRLCNIPKFERNNSDLNLAINVFEYNNTPSKQLNDIDYVPHHPHLALIHRTKVIGGNPINLLLLQDGDNFHYTAIFNLNR 749 HSP 7 Score: 31.5722 bits (70), Expect = 4.989e-21 Identity = 16/41 (39.02%), Postives = 26/41 (63.41%), Query Frame = 3 Query: 456 WELDRIIEVNFKITKVSNISR*S*HSYIFISKGLIVKKAIV 578 W + +I E++F +T +SR + HS+I + L+ KKAIV Sbjct: 580 WRVVKIREIDFILTAYYPVSRLAGHSFIPTPESLVGKKAIV 620
BLAST of Retrotransposable element vs. Planmine SMEST
Match: SMESG000018611.1 (SMESG000018611.1) HSP 1 Score: 169.088 bits (427), Expect = 2.383e-83 Identity = 90/129 (69.77%), Postives = 101/129 (78.29%), Query Frame = 1 Query: 565 KKQ*FNVQNKDNLCFINSVLDILKFDKI*KDRERPTKYLPYLTELVNDFNDMPMKLYDIPIFEKKNPGLAINVLIYNSANPVNNGSTVMKHPCLNIIHRKKVTGVDPIYLLLIKEVKKY-FTAVNNLQK 948 KK NVQN DNLCFI SVL +LK DKI KDR+RP KYLPY+ +LV D NDMPMKL DIP F+KKNPGLAINV+IYN+ N + +MKHP LNII R KVTGVDPIYLLLIKE +KY +TAV NLQ Sbjct: 1388 KKAIVNVQNTDNLCFIYSVLAVLKSDKIKKDRDRPRKYLPYMNDLVYDPNDMPMKLCDIPTFKKKNPGLAINVMIYNNENFEDREELIMKHPYLNIIQRTKVTGVDPIYLLLIKEGEKYHYTAVTNLQS 1516 HSP 2 Score: 70.0922 bits (170), Expect = 2.383e-83 Identity = 36/60 (60.00%), Postives = 45/60 (75.00%), Query Frame = 3 Query: 3 QTKTFNPYPKFYNDYRAHLTQFNDDKISLFKSGVKRKCTMSSEIFEKINIKDIIRAGV*L 182 QT+T +PY KFYND++ HLTQF DK SLFK +KRK T+ SEI EKI IKD ++ G+ L Sbjct: 1187 QTQTSDPYLKFYNDHKNHLTQFYTDKKSLFKHSLKRKSTIKSEILEKIFIKDDLQIGLGL 1246 HSP 3 Score: 68.1662 bits (165), Expect = 2.383e-83 Identity = 41/60 (68.33%), Postives = 47/60 (78.33%), Query Frame = 3 Query: 405 MVKIN*MEKIVEQTEL--RWELDRIIEVNFKITKVSNISR*S*HSYIFISKGLIVKKAIV 578 M KIN EKIVE+TEL W+++RI+EVNFK+TKVSNISR S HSYI K LI KKAIV Sbjct: 1335 MKKIN--EKIVERTELGSSWKINRILEVNFKVTKVSNISRLSGHSYIPTPKALIGKKAIV 1392 HSP 4 Score: 49.2914 bits (116), Expect = 2.383e-83 Identity = 29/63 (46.03%), Postives = 38/63 (60.32%), Query Frame = 2 Query: 245 VNIDRYNAKDIKLQQF-----------MKQSKIEFGIQVEFEKD-ENKIICM*NRAVPMISTF 397 VNI RYN K+I L MK SK++FG+QVEFEKD E K++ + NRA + +TF Sbjct: 1268 VNIGRYNVKEIVLPSSLLEKLKITLNEMKHSKVQFGVQVEFEKDGELKVVSISNRAASVTTTF 1330 HSP 5 Score: 37.3502 bits (85), Expect = 2.383e-83 Identity = 15/24 (62.50%), Postives = 19/24 (79.17%), Query Frame = 1 Query: 172 GFNYSIVIAEPEIDYDLLRSHQVI 243 G S +I EPEI+YDLLRSH++I Sbjct: 1243 GLGLSDIIVEPEIEYDLLRSHRII 1266
BLAST of Retrotransposable element vs. Planmine SMEST
Match: SMESG000018611.1 (SMESG000018611.1) HSP 1 Score: 169.088 bits (427), Expect = 2.481e-83 Identity = 90/129 (69.77%), Postives = 101/129 (78.29%), Query Frame = 1 Query: 565 KKQ*FNVQNKDNLCFINSVLDILKFDKI*KDRERPTKYLPYLTELVNDFNDMPMKLYDIPIFEKKNPGLAINVLIYNSANPVNNGSTVMKHPCLNIIHRKKVTGVDPIYLLLIKEVKKY-FTAVNNLQK 948 KK NVQN DNLCFI SVL +LK DKI KDR+RP KYLPY+ +LV D NDMPMKL DIP F+KKNPGLAINV+IYN+ N + +MKHP LNII R KVTGVDPIYLLLIKE +KY +TAV NLQ Sbjct: 1442 KKAIVNVQNTDNLCFIYSVLAVLKSDKIKKDRDRPRKYLPYMNDLVYDPNDMPMKLCDIPTFKKKNPGLAINVMIYNNENFEDREELIMKHPYLNIIQRTKVTGVDPIYLLLIKEGEKYHYTAVTNLQS 1570 HSP 2 Score: 70.0922 bits (170), Expect = 2.481e-83 Identity = 36/60 (60.00%), Postives = 45/60 (75.00%), Query Frame = 3 Query: 3 QTKTFNPYPKFYNDYRAHLTQFNDDKISLFKSGVKRKCTMSSEIFEKINIKDIIRAGV*L 182 QT+T +PY KFYND++ HLTQF DK SLFK +KRK T+ SEI EKI IKD ++ G+ L Sbjct: 1241 QTQTSDPYLKFYNDHKNHLTQFYTDKKSLFKHSLKRKSTIKSEILEKIFIKDDLQIGLGL 1300 HSP 3 Score: 68.1662 bits (165), Expect = 2.481e-83 Identity = 41/60 (68.33%), Postives = 47/60 (78.33%), Query Frame = 3 Query: 405 MVKIN*MEKIVEQTEL--RWELDRIIEVNFKITKVSNISR*S*HSYIFISKGLIVKKAIV 578 M KIN EKIVE+TEL W+++RI+EVNFK+TKVSNISR S HSYI K LI KKAIV Sbjct: 1389 MKKIN--EKIVERTELGSSWKINRILEVNFKVTKVSNISRLSGHSYIPTPKALIGKKAIV 1446 HSP 4 Score: 49.2914 bits (116), Expect = 2.481e-83 Identity = 29/63 (46.03%), Postives = 38/63 (60.32%), Query Frame = 2 Query: 245 VNIDRYNAKDIKLQQF-----------MKQSKIEFGIQVEFEKD-ENKIICM*NRAVPMISTF 397 VNI RYN K+I L MK SK++FG+QVEFEKD E K++ + NRA + +TF Sbjct: 1322 VNIGRYNVKEIVLPSSLLEKLKITLNEMKHSKVQFGVQVEFEKDGELKVVSISNRAASVTTTF 1384 HSP 5 Score: 37.3502 bits (85), Expect = 2.481e-83 Identity = 15/24 (62.50%), Postives = 19/24 (79.17%), Query Frame = 1 Query: 172 GFNYSIVIAEPEIDYDLLRSHQVI 243 G S +I EPEI+YDLLRSH++I Sbjct: 1297 GLGLSDIIVEPEIEYDLLRSHRII 1320
BLAST of Retrotransposable element vs. Planmine SMEST
Match: SMESG000017693.1 (SMESG000017693.1) HSP 1 Score: 172.17 bits (435), Expect = 2.931e-83 Identity = 91/128 (71.09%), Postives = 102/128 (79.69%), Query Frame = 1 Query: 565 KKQ*FNVQNKDNLCFINSVLDILKFDKI*KDRERPTKYLPYLTELVNDFNDMPMKLYDIPIFEKKNPGLAINVLIYNSANPVNNGSTVMKHPCLNIIHRKKVTGVDPIYLLLIKEVKKY-FTAVNNLQ 945 KK NVQN DNLCFI SVL +LK DKI KDR+RP KYLPY+ +LV D NDMPMKL DIP FEKKNPGLAINV+IYN+ N + +MKHP LNIIHR KV+GVDPIYLLLIKE +KY +TAV NLQ Sbjct: 937 KKAIVNVQNTDNLCFIYSVLAVLKSDKIKKDRDRPRKYLPYMNDLVYDPNDMPMKLCDIPTFEKKNPGLAINVMIYNNENFEDREELIMKHPYLNIIHRTKVSGVDPIYLLLIKEGEKYHYTAVTNLQ 1064 HSP 2 Score: 70.0922 bits (170), Expect = 2.931e-83 Identity = 36/60 (60.00%), Postives = 45/60 (75.00%), Query Frame = 3 Query: 3 QTKTFNPYPKFYNDYRAHLTQFNDDKISLFKSGVKRKCTMSSEIFEKINIKDIIRAGV*L 182 QT+T +PY KFYND++ HLTQF DK SLFK +KRK T+ SEI EKI IKD ++ G+ L Sbjct: 736 QTQTSDPYLKFYNDHKNHLTQFYTDKKSLFKHSLKRKSTIKSEILEKIFIKDDLQIGLGL 795 HSP 3 Score: 65.855 bits (159), Expect = 2.931e-83 Identity = 40/58 (68.97%), Postives = 45/58 (77.59%), Query Frame = 3 Query: 411 KIN*MEKIVEQTEL--RWELDRIIEVNFKITKVSNISR*S*HSYIFISKGLIVKKAIV 578 KIN EKIVE+TEL W++ RIIEVNFK+TKVSNISR S HSYI K L+ KKAIV Sbjct: 886 KIN--EKIVERTELGSSWKISRIIEVNFKVTKVSNISRLSGHSYIPKPKALLGKKAIV 941 HSP 4 Score: 48.521 bits (114), Expect = 2.931e-83 Identity = 29/63 (46.03%), Postives = 38/63 (60.32%), Query Frame = 2 Query: 245 VNIDRYNAKDIKLQ-----------QFMKQSKIEFGIQVEFEKD-ENKIICM*NRAVPMISTF 397 VNI RYN K+I L MK SK++FG+QVEFEKD E K++ + NRA + +TF Sbjct: 817 VNIGRYNVKEIVLPFSLFEKLKITLNEMKHSKVQFGVQVEFEKDGELKVVSISNRAASVTTTF 879 HSP 5 Score: 37.3502 bits (85), Expect = 2.931e-83 Identity = 15/24 (62.50%), Postives = 19/24 (79.17%), Query Frame = 1 Query: 172 GFNYSIVIAEPEIDYDLLRSHQVI 243 G S +I EPEI+YDLLRSH++I Sbjct: 792 GLGLSDIIVEPEIEYDLLRSHRII 815 HSP 6 Score: 172.17 bits (435), Expect = 8.656e-81 Identity = 91/128 (71.09%), Postives = 102/128 (79.69%), Query Frame = 1 Query: 565 KKQ*FNVQNKDNLCFINSVLDILKFDKI*KDRERPTKYLPYLTELVNDFNDMPMKLYDIPIFEKKNPGLAINVLIYNSANPVNNGSTVMKHPCLNIIHRKKVTGVDPIYLLLIKEVKKY-FTAVNNLQ 945 KK NVQN DNLCFI SVL +LK DKI KDR+RP KYLPY+ +LV D NDMPMKL DIP FEKKNPGLAINV+IYN+ N + +MKHP LNIIHR KV+GVDPIYLLLIKE +KY +TAV NLQ Sbjct: 316 KKAIVNVQNTDNLCFIYSVLAVLKSDKIKKDRDRPRKYLPYMNDLVYDPNDMPMKLCDIPTFEKKNPGLAINVMIYNNENFEDREELIMKHPYLNIIHRTKVSGVDPIYLLLIKEGEKYHYTAVTNLQ 443 HSP 7 Score: 70.0922 bits (170), Expect = 8.656e-81 Identity = 36/60 (60.00%), Postives = 45/60 (75.00%), Query Frame = 3 Query: 3 QTKTFNPYPKFYNDYRAHLTQFNDDKISLFKSGVKRKCTMSSEIFEKINIKDIIRAGV*L 182 QT+T +PY KFYND++ HLTQF DK SLFK +KRK T+ SEI EKI IKD ++ G+ L Sbjct: 130 QTQTSDPYLKFYNDHKNHLTQFYTDKKSLFKHSLKRKSTIKSEILEKIFIKDDLQIGLGL 189 HSP 8 Score: 56.9954 bits (136), Expect = 8.656e-81 Identity = 29/41 (70.73%), Postives = 33/41 (80.49%), Query Frame = 3 Query: 456 WELDRIIEVNFKITKVSNISR*S*HSYIFISKGLIVKKAIV 578 W++ RIIEVNFK+TKVSNISR S HSYI K L+ KKAIV Sbjct: 280 WKISRIIEVNFKVTKVSNISRLSGHSYIPTPKALLGKKAIV 320 HSP 9 Score: 48.9062 bits (115), Expect = 8.656e-81 Identity = 29/63 (46.03%), Postives = 38/63 (60.32%), Query Frame = 2 Query: 245 VNIDRYNAKDIKLQ-----------QFMKQSKIEFGIQVEFEKD-ENKIICM*NRAVPMISTF 397 VNI RYN K+I L MK SK++FG+QVEFEKD E K++ + NRA + +TF Sbjct: 211 VNIGRYNVKEIVLSFSLFEKLKITLNEMKHSKVQFGVQVEFEKDVELKVVSISNRAASVTTTF 273 HSP 10 Score: 37.3502 bits (85), Expect = 8.656e-81 Identity = 15/24 (62.50%), Postives = 19/24 (79.17%), Query Frame = 1 Query: 172 GFNYSIVIAEPEIDYDLLRSHQVI 243 G S +I EPEI+YDLLRSH++I Sbjct: 186 GLGLSDIIVEPEIEYDLLRSHRII 209 HSP 11 Score: 70.0922 bits (170), Expect = 7.240e-17 Identity = 36/60 (60.00%), Postives = 45/60 (75.00%), Query Frame = 3 Query: 3 QTKTFNPYPKFYNDYRAHLTQFNDDKISLFKSGVKRKCTMSSEIFEKINIKDIIRAGV*L 182 QT+T +PY KFYND++ HLTQF DK SLFK +KRK T+ SEI EKI IKD ++ G+ L Sbjct: 1357 QTQTSDPYLKFYNDHKNHLTQFYTDKKSLFKHSLKRKSTIKSEILEKIFIKDDLQIGLGL 1416 HSP 12 Score: 37.3502 bits (85), Expect = 7.240e-17 Identity = 15/24 (62.50%), Postives = 19/24 (79.17%), Query Frame = 1 Query: 172 GFNYSIVIAEPEIDYDLLRSHQVI 243 G S +I EPEI+YDLLRSH++I Sbjct: 1413 GLGLSDIIVEPEIEYDLLRSHRII 1436 HSP 13 Score: 20.4014 bits (41), Expect = 7.240e-17 Identity = 9/13 (69.23%), Postives = 10/13 (76.92%), Query Frame = 2 Query: 245 VNIDRYNAKDIKL 283 VNI RYN K+I L Sbjct: 1438 VNIGRYNVKEIVL 1450 The following BLAST results are available for this feature:
BLAST of Retrotransposable element vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of Retrotransposable element vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of Retrotransposable element vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of Retrotransposable element vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 5
BLAST of Retrotransposable element vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 5
BLAST of Retrotransposable element vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of Retrotransposable element vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of Retrotransposable element vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of Retrotransposable element vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 5
BLAST of Retrotransposable element vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of Retrotransposable element vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of Retrotransposable element vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of Retrotransposable element vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 5
BLAST of Retrotransposable element vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30013953 ID=SMED30013953|Name=Retrotransposable element|organism=Schmidtea mediterranea sexual|type=transcript|length=4527bpback to top protein sequence of SMED30013953-orf-1 >SMED30013953-orf-1 ID=SMED30013953-orf-1|Name=SMED30013953-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=109bp MKNESKVIQSSKPFEKIFVDICDPLRETFNWKRYIYAIIYHYSKYISLTAback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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