SMED30013948

Overview
NameSMED30013948
Smed IDSMED30013948
Length (bp)1118
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30013948 (SMED30013948) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30013948 (SMED30013948) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30013948 (SMED30013948) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30013948 (SMED30013948) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020




SMED30013948

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 5

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
head regionSMED30013948SMESG000006883.1 SmedASXL_011618SmedAsxl_ww_GCZZ01PMID:27034770
Currie et al., 2016
whole organism asexual adult RNA-sequencing evidence
nervous systemSMED30013948SMESG000006883.1 dd_Smed_v4_13870_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30013948SMESG000006883.1 dd_Smed_v4_13870_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
head regionSMED30013948SMESG000006883.1 dd_Smed_v6_13870_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017
whole organism asexual adult RNA-sequencing evidence
head regionSMED30013948SMESG000077703.1 SMESG000006883.1 OX_Smed_1.0.22588ox_Smed_v2PMID:24238224
Kao et al., 2013
whole organism asexual adult RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30013948 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.022857:8090..9321 +3381
Homology
BLAST of SMED30013948 vs. TrEMBL
Match: A0A0X3NQ06 (Uncharacterized protein OS=Schistocephalus solidus OX=70667 GN=TR99331 PE=4 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.350e-20
Identity = 90/276 (32.61%), Postives = 132/276 (47.83%), Query Frame = 3
Query:   90 RNKTLHKVVVFNTERQNNVCIITEMNVILVIKNNIQNFSSEIAFSDNSTLRANCSSFNRQLSISFGEIEVDFTWIRDPDPYEFGEVGWSSVGAPANTTSGTYTLSKITLSL----PLSILTRNPGDDNKVFFQNLDNER-FKTRSGDFYACETRIGFDL-SPINA--------------------SRIYNSNLIHLRFEFENMKMQAFSDVNVSDFTGTGQICHNDLPADXXXXXXXXXXXXXXXXXXXXXXXXXRLKEKDQQYEEIEPSKFVSQK 839
            RN +LH   +F +E   N C  T   + LVI              D  T  AN S     L        ++FTW R P+ YE GE+GWSSVG  A T SGTY+L+ ++L L     L +   NP    + F  + + +  F+ R+GDFY CE+     L SP +A                    SR  +++ I +     N+++QAFSD N  +FTG+G IC  D+  D  V++  G  V V+V   +  L I RL+EKD+  + I+ S   +++
Sbjct:  156 RNASLHHQKIF-SEIPLNRCSNTSRTLSLVI--------------DVQTQEANASVLEPWL--------LEFTWKRTPEHYEVGEIGWSSVGVHAGTLSGTYSLTDVSLFLYLHDQLGLELINPNLVGRPFVVHAEAQNLFRVRAGDFYQCESEHHLLLTSPQSALTAFRTSLTASNEPYAADNLSRSVSNHGIRVILSTRNLRLQAFSDYNDEEFTGSGVICKEDIHEDHTVTLVFGATVCVVVAISMVGLMITRLREKDRDLQAIDASILKTKQ 408          
BLAST of SMED30013948 vs. TrEMBL
Match: A0A0X3PZ31 (Uncharacterized protein (Fragment) OS=Schistocephalus solidus OX=70667 GN=TR99331 PE=4 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.448e-20
Identity = 90/276 (32.61%), Postives = 132/276 (47.83%), Query Frame = 3
Query:   90 RNKTLHKVVVFNTERQNNVCIITEMNVILVIKNNIQNFSSEIAFSDNSTLRANCSSFNRQLSISFGEIEVDFTWIRDPDPYEFGEVGWSSVGAPANTTSGTYTLSKITLSL----PLSILTRNPGDDNKVFFQNLDNER-FKTRSGDFYACETRIGFDL-SPINA--------------------SRIYNSNLIHLRFEFENMKMQAFSDVNVSDFTGTGQICHNDLPADXXXXXXXXXXXXXXXXXXXXXXXXXRLKEKDQQYEEIEPSKFVSQK 839
            RN +LH   +F +E   N C  T   + LVI              D  T  AN S     L        ++FTW R P+ YE GE+GWSSVG  A T SGTY+L+ ++L L     L +   NP    + F  + + +  F+ R+GDFY CE+     L SP +A                    SR  +++ I +     N+++QAFSD N  +FTG+G IC  D+  D  V++  G  V V+V   +  L I RL+EKD+  + I+ S   +++
Sbjct:  194 RNASLHHQKIF-SEIPLNRCSNTSRTLSLVI--------------DVQTQEANASVLEPWL--------LEFTWKRTPEHYEVGEIGWSSVGVHAGTLSGTYSLTDVSLFLYLHDQLGLELINPNLVGRPFVVHAEAQNLFRVRAGDFYQCESEHHLLLTSPQSALTAFRTSLTASNEPYAADNLSRSVSNHGIRVILSTRNLRLQAFSDYNDEEFTGSGVICKEDIHEDHTVTLAFGATVCVVVAISMVGLMITRLREKDRDLQAIDASILKTKQ 446          
BLAST of SMED30013948 vs. TrEMBL
Match: A0A0X3NVG7 (Uncharacterized protein OS=Schistocephalus solidus OX=70667 GN=TR99331 PE=4 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.877e-20
Identity = 90/276 (32.61%), Postives = 132/276 (47.83%), Query Frame = 3
Query:   90 RNKTLHKVVVFNTERQNNVCIITEMNVILVIKNNIQNFSSEIAFSDNSTLRANCSSFNRQLSISFGEIEVDFTWIRDPDPYEFGEVGWSSVGAPANTTSGTYTLSKITLSLPL----SILTRNPGDDNKVFFQNLDNER-FKTRSGDFYACETRIGFDL-SPINA--------------------SRIYNSNLIHLRFEFENMKMQAFSDVNVSDFTGTGQICHNDLPADXXXXXXXXXXXXXXXXXXXXXXXXXRLKEKDQQYEEIEPSKFVSQK 839
            RN +LH   +F +E   N C  T   + LVI              D  T  AN S     L        ++FTW R P+ YE GE+GWSSVG  A T SGTY+L+ ++L L L     +   NP    + F  + + +  F+ R+GDFY CE+     L SP +A                    SR  +++ I +     N+++QAFSD N  +FTG+G IC  D+  D  V++  G  V V+V   +  L I RL+EKD+  + I+ S   +++
Sbjct:  156 RNASLHHQKIF-SEIPLNRCSNTSRTLSLVI--------------DVQTQEANASVLEPWL--------LEFTWKRTPEHYEVGEIGWSSVGVHAGTLSGTYSLTDVSLFLYLHDQRGLELINPNLVGRPFVVHAEAQNLFRVRAGDFYQCESEHHLLLTSPQSALTAFRTSLTASNEPYAADNLSRSVSNHGIRVILSTRNLRLQAFSDYNDEEFTGSGVICKEDIHEDHTVTLAFGATVCVVVAISMVGLMITRLREKDRDLQAIDASILKTKQ 408          
BLAST of SMED30013948 vs. TrEMBL
Match: A0A504YG09 (Uncharacterized protein OS=Fasciola gigantica OX=46835 GN=FGIG_08607 PE=4 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.183e-20
Identity = 84/295 (28.47%), Postives = 140/295 (47.46%), Query Frame = 3
Query:   21 IHLLYIF--NSIYCHTIAIFDKPVERNKTLHKV--VVFNTERQNNVCIITEMNVILVIKNNIQNFSSEIAFSDNSTLRANCSSFNRQLSISFGEIEVD--------FTWIRDPDPYEFGEVGWSSVGAPANTTSGTYTLSKITLSLPLSILTRNPG-----DDNKVFFQNLDNERFKTRSGDFYACETRIGFDLSPIN----------ASRIYNSNLIHLRFEFENMKMQAFSDVNVSDFTGTGQICHNDLPADXXXXXXXXXXXXXXXXXXXXXXXXXRLKEKDQQYEEIEPSK 824
            +H+ Y    N   CHT+++  +P    + L  +  V+FN    ++V    E         N+ +   E+  +   T    C+ + R  +I  G    D         TW+R P+ YEFGEVGWSSVGAP  + SG Y L ++ L+  LS     P      ++      +  ++RF+ R GD+Y C ++    + P N           +R      I +     +++ QAF+DVNV +FTG   +C  D   D  +SI IG+++  LV+ VL  L I  LK++D+ ++ ++ ++
Sbjct:   74 LHVFYPLDENKTGCHTVSLDIRPTGGREQLQTIQPVLFN----DSVPDEEETTA----PRNLSDADVELVLT---TEEECCTIYTRCFTIPLGRTPDDPLYGWRLNLTWVRTPEAYEFGEVGWSSVGAPIGSLSGVYDLIQVQLTYALSKRAGFPSLPSNLNEQPFVVSSAAHQRFQARVGDYYECASQTDIVMEPNNETVNLLTIEKGARETVLPGIRVILVMSDIRSQAFADVNVPEFTGASVVCAGDTSHDGTMSIVIGLSICSLVILVLLGLVISHLKDRDRTFKAVDTAE 357          
BLAST of SMED30013948 vs. TrEMBL
Match: A0A4E0RKD5 (Uncharacterized protein OS=Fasciola hepatica OX=6192 GN=D915_002741 PE=4 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.263e-20
Identity = 84/295 (28.47%), Postives = 141/295 (47.80%), Query Frame = 3
Query:   21 IHLLYIF--NSIYCHTIAIFDKPVERNKTLHKV--VVFNTERQNNVCIITEMNVILVIKNNIQNFSSEIAFSDNSTLRANCSSFNRQLSISFGEIEVD--------FTWIRDPDPYEFGEVGWSSVGAPANTTSGTYTLSKITLSLPLSILTRNPG-----DDNKVFFQNLDNERFKTRSGDFYACETRIGFDLSPIN----------ASRIYNSNLIHLRFEFENMKMQAFSDVNVSDFTGTGQICHNDLPADXXXXXXXXXXXXXXXXXXXXXXXXXRLKEKDQQYEEIEPSK 824
            +H+ Y    N   CHT+++  +P+   + L  +  V+FN    ++V    E         N+ +   E+  +   T    C+ + R  +I  G    D         TW+R P+ YEFGEVGWSSVGAP  + SG Y L ++ L+  LS     P      ++      +  ++RF+ R GD+Y C ++    + P N           +R      I +     +++ QAF+DVNV +FTG   +C  D   D  +SI IG+++  LV+ VL  L I  LK++D+ ++ ++ ++
Sbjct:   89 VHVFYPLGENKTGCHTVSLDIRPMGGREQLQTIQPVLFN----DSVPDEEETTA----PRNLSDADVELVLT---TEEECCTIYTRCFTIPLGRTPDDPLYGWRLNLTWVRTPEAYEFGEVGWSSVGAPIGSLSGVYDLIQVQLTYTLSKRAGFPSLPSNLNEQPFVVSSAAHQRFQARVGDYYECASQTDIVMEPNNETVNLLTIEKGTRETVLPGIRVILVMSDIRSQAFADVNVPEFTGASVVCAGDTSHDGTMSIVIGLSICSLVILVLLGLVISHLKDRDRTFKAVDTAE 372          
BLAST of SMED30013948 vs. Planmine SMEST
Match: SMESG000006883.1 (SMESG000006883.1)

HSP 1 Score: 437.187 bits (1123), Expect = 1.131e-155
Identity = 213/216 (98.61%), Postives = 215/216 (99.54%), Query Frame = 3
Query:   27 LLYIFNSIYCHTIAIFDKPVERNKTLHKVVVFNTERQNNVCIITEMNVILVIKNNIQNFSSEIAFSDNSTLRANCSSFNRQLSISFGEIEVDFTWIRDPDPYEFGEVGWSSVGAPANTTSGTYTLSKITLSLPLSILTRNPGDDNKVFFQNLDNERFKTRSGDFYACETRIGFDLSPINASRIYNSNLIHLRFEFENMKMQAFSDVNVSDFTGTGQ 674
            +L IFNSIYCHTIAIFDKPVERNKTLHKVVVFNTERQNNVCIITEMNVILVIKNNIQNFSSEIAFSDNSTLRANCSSFNRQLSISFGEIEVDFTWIRDPDPYEFGEVGWSSVGAPANTTSGTYTLSKITLSLPLSILTRNPGDDNKVFFQNLDNERFKTRSGDFYACETRIGFDLSPINASRIYNSNLIHLRFEFENMKMQAFSDVNVSDFTGTG+
Sbjct:    7 VLDIFNSIYCHTIAIFDKPVERNKTLHKVVVFNTERQNNVCIITEMNVILVIKNNIQNFSSEIAFSDNSTLRANCSSFNRQLSISFGEIEVDFTWIRDPDPYEFGEVGWSSVGAPANTTSGTYTLSKITLSLPLSILTRNPGDDNKVFFQNLDNERFKTRSGDFYACETRIGFDLSPINASRIYNSNLIHLRFEFENMKMQAFSDVNVSDFTGTGK 222          
The following BLAST results are available for this feature:
BLAST of SMED30013948 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30013948 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30013948 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30013948 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30013948 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30013948 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30013948 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30013948 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0X3NQ062.350e-2032.61Uncharacterized protein OS=Schistocephalus solidus... [more]
A0A0X3PZ312.448e-2032.61Uncharacterized protein (Fragment) OS=Schistocepha... [more]
A0A0X3NVG73.877e-2032.61Uncharacterized protein OS=Schistocephalus solidus... [more]
A0A504YG094.183e-2028.47Uncharacterized protein OS=Fasciola gigantica OX=4... [more]
A0A4E0RKD54.263e-2028.47Uncharacterized protein OS=Fasciola hepatica OX=61... [more]
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BLAST of SMED30013948 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30013948 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30013948 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30013948 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30013948 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30013948 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 1
Match NameE-valueIdentityDescription
SMESG000006883.11.131e-15598.61SMESG000006883.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30013948 ID=SMED30013948|Name=SMED30013948|organism=Schmidtea mediterranea sexual|type=transcript|length=1118bp
TTATGATAATTCATTTTGGAATACACTTACTGTACATTTTTAATTCTATA
TATTGCCACACGATAGCGATTTTCGATAAACCAGTTGAGAGAAATAAAAC
ATTGCACAAAGTTGTGGTTTTTAATACTGAAAGACAAAACAATGTATGCA
TCATTACCGAAATGAATGTGATCTTAGTTATCAAGAATAATATACAAAAT
TTTTCTTCAGAGATTGCTTTTAGTGACAATTCAACTCTTCGTGCAAATTG
CAGTAGTTTCAATAGACAACTTTCAATAAGCTTTGGTGAAATAGAAGTTG
ATTTTACGTGGATCAGGGATCCTGATCCTTACGAATTTGGAGAAGTCGGG
TGGAGTAGTGTCGGTGCTCCGGCTAATACGACTTCCGGAACTTATACATT
GTCTAAAATAACTTTGTCGTTGCCATTGTCGATTTTAACACGAAATCCTG
GTGATGATAATAAGGTCTTTTTCCAAAATCTAGACAACGAACGATTCAAA
ACTCGATCAGGGGATTTTTATGCCTGCGAAACACGAATTGGATTTGATTT
GAGTCCAATTAATGCTTCAAGAATTTACAATTCGAATTTAATTCATTTGA
GATTCGAGTTTGAAAATATGAAAATGCAAGCGTTTAGTGATGTGAATGTG
AGCGATTTTACAGGAACAGGTCAAATTTGTCACAATGATTTACCGGCAGA
CTCGGGTGTTTCTATTGGTATTGGGGTGGCTGTATCAGTTCTGGTTGTAG
CGGTTTTGGCATTTTTAGCAATCGGTCGTCTGAAAGAAAAAGATCAACAA
TATGAAGAAATAGAACCCAGCAAATTTGTTTCACAAAAAATTTGAAATTA
AAATTCTATTAGAGAACAACATTACCTGTGATATTATTTAGACTATTTTT
AGAGACTTATATTGGCATTTTTGTGATTTTTAGATGCACAACGGTTTTCT
TTGTAATTGATCATGTTTTAGCCGAATTACACATGAAATTGTTTCCAAAT
TTCAAATAGATTTAAATAGCACTTACTGCAACAGATCAGAAACATCTCAG
CTTTTAAATTTCTCATTTTTTAGACTATTGATCTGTATTTTCTTTTATAT
TTCCACGTGCTCTCTGAC
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protein sequence of SMED30013948-orf-1

>SMED30013948-orf-1 ID=SMED30013948-orf-1|Name=SMED30013948-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=281bp
MIIHFGIHLLYIFNSIYCHTIAIFDKPVERNKTLHKVVVFNTERQNNVCI
ITEMNVILVIKNNIQNFSSEIAFSDNSTLRANCSSFNRQLSISFGEIEVD
FTWIRDPDPYEFGEVGWSSVGAPANTTSGTYTLSKITLSLPLSILTRNPG
DDNKVFFQNLDNERFKTRSGDFYACETRIGFDLSPINASRIYNSNLIHLR
FEFENMKMQAFSDVNVSDFTGTGQICHNDLPADSGVSIGIGVAVSVLVVA
VLAFLAIGRLKEKDQQYEEIEPSKFVSQKI*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000099neuron
PLANA:0000418head
Vocabulary: INTERPRO
TermDefinition
IPR002000Lysosome-assoc_membr_glycop
Vocabulary: cellular component
TermDefinition
GO:0016020membrane
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:2.40.160.110coord: 36..232
e-value: 3.1E-8
score: 35.7
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..18
score: 0.57
NoneNo IPR availableTMHMMTMhelixcoord: 235..257
IPR002000Lysosome-associated membrane glycoproteinPANTHERPTHR11506LYSOSOME-ASSOCIATED MEMBRANE GLYCOPROTEINcoord: 36..270