SMED30013884

Overview
NameSMED30013884
Smed IDSMED30013884
Length (bp)2411
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30013884 (SMED30013884) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30013884 (SMED30013884) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30013884 (SMED30013884) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30013884 (SMED30013884) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30013884

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 8

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
head regionSMED30013884SMESG000049207.1 SMESG000049205.1 SMESG000049063.1 SmedASXL_016370SmedAsxl_ww_GCZZ01PMID:27034770
Currie et al., 2016		whole organism asexual adult RNA-sequencing evidence
pharynxSMED30013884SMESG000049207.1 SMESG000049205.1 SMESG000049063.1 dd_Smed_v4_11081_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30013884SMESG000049207.1 SMESG000049205.1 SMESG000049063.1 dd_Smed_v4_11081_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30013884SMESG000049207.1 SMESG000049205.1 SMESG000049063.1 dd_Smed_v4_11081_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30013884SMESG000049207.1 SMESG000049205.1 SMESG000049063.1 dd_Smed_v4_11081_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30013884SMESG000049207.1 SMESG000049205.1 SMESG000049063.1 dd_Smed_v4_11081_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30013884SMESG000049207.1 SMESG000049205.1 SMESG000049063.1 dd_Smed_v4_11081_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017		whole organism asexual adult single-cell RNA-sequencing evidence
dorsal region of the epidermisSMED30013884SMESG000049207.1 SMESG000049205.1 SMESG000049063.1 dd_Smed_v4_11081_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017		whole organism asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of SMED30013884 vs. Planmine SMEST
Match: SMESG000049063.1 (SMESG000049063.1)

HSP 1 Score: 1400.57 bits (3624), Expect = 0.000e+0
Identity = 766/775 (98.84%), Postives = 769/775 (99.23%), Query Frame = 2 
Query:   38 MTMXXXXXXXXXXXXXXXXXXDVERVYVDWPEIDSEEFRFISSRLEDGEMTPLYFQHHIQDNQYNIFNINQLRFADKSRSEPAANDRYEDLXXXXXXXXXXXXXVPPLDLISQNSSIEIPGAKGVIDIXXXXXXXXXXXXXXXYKNQSLQNFERDSLDVENINHFNENKGNQSYPLLSTTLPEIQHSDLMLNPGEYDTSRYNKPASNVSRKFSEISVASQYKSELSSAESHHVQRLENEKAIFEAAKQKYKQTVSKSSQNSAESHQPEYIQELSPAKNLKSKPTMLVAPQIKQQLYNTDKTPNFVELNKISTCPQKQSNQTSYASKFIERHHKESPKPVLKKSESFKDSIHYQNMSGEKLNSDIPHEFSGEEYLNKRVKSVDRFMRDNPNGDNHELPIINSGFPANQTSDSSKLVSPPHFIYAYNQYGEAMIINTEKVVGHYHNTNLDHSHFHSPYNQNQPQYYPSPNTINENRSQSNSPQINHKAYHSQEIHKPAEPEFVFKDANYKRQPTLYDESLLTRKFKEITTERSGSRFPPIPNTTDSTQSQTTGYASHHKKKEISYEQYTLRDFRNIKQVERGGGLGPNIGSDSYKQLKEKLIRQKNYSKAVLEKNRQELIKTNEKTSREKPMKSDTSTENISFQNVQDVLVSTRDNDKLEAVLHKPLEQTSNEQVTIQREETKSSNFQKMGSASSKELINKREAMLNYAXXXXXXXXXXXXXXXHGSKVHSANIKKEVEKSAIHELINNSDLDRLLQRHEDDKKIADQIRIKLGKIS 2362
            MTMFNGSSEKEFSEKNFETNEDVERVYVDWPEIDSEEFRFISSRLEDGEMTPLYFQHHIQDNQYNIF+INQLRFADKSRSEPAANDRYEDLSKKKISKKLKNSSVPPLDLISQNSSIEIPGAKGVIDIDLRSSSESLSDDSEEYKNQSLQNFERDSLDVENINHFNENKGNQSYPLLSTTLPEIQHSDLMLNPGEYDTSRYNKPASNVSRKFSEISVASQYKSELSSAESHHVQRLENEKAIFEAAKQKYKQ VSKSSQNSAESHQPEYI E SPAKNLKSKPTMLVAPQIKQQLYNTDKTPNFVELNKISTCP KQSNQTSYASKFIERHHKESPKPVLKKSESFKDSIHYQNM+GEKLNSDIPHEFSGEEYLNKRVKSVDR MRDN NGDNHELPIINSGFPANQTSDSSKLV+PPHFIYAYNQYGEAMIINTEKVVGHYHNTNLDHSHFHSPYNQNQPQYYPSPNTINENRSQSNSPQINHKAYHSQEIHKPAEPEFVFKDANYKRQPTLYDESLLTRKFKEITTERSGSRFPPIPNTTDSTQSQTTGYASHHKKKEISYEQYTLRDFRNIKQVERGGGLGPNIGSDSYKQLKEKLIRQKNYSKAVLEKNRQELIKTNEKTSREKPMKSDTSTENISFQNVQDVLVSTRDNDKLEAVLHKPLEQTSNEQVTIQREETKSSNFQKMGSASSKELINKREAMLNYAKSIQEKQIRKKEIKSHGSKVHSANIKKEVEKSAIHELINNSDLDRLLQRHEDDKKIADQIRIKLGKIS
Sbjct:    1 MTMFNGSSEKEFSEKNFETNEDVERVYVDWPEIDSEEFRFISSRLEDGEMTPLYFQHHIQDNQYNIFDINQLRFADKSRSEPAANDRYEDLSKKKISKKLKNSSVPPLDLISQNSSIEIPGAKGVIDIDLRSSSESLSDDSEEYKNQSLQNFERDSLDVENINHFNENKGNQSYPLLSTTLPEIQHSDLMLNPGEYDTSRYNKPASNVSRKFSEISVASQYKSELSSAESHHVQRLENEKAIFEAAKQKYKQNVSKSSQNSAESHQPEYIPEHSPAKNLKSKPTMLVAPQIKQQLYNTDKTPNFVELNKISTCPHKQSNQTSYASKFIERHHKESPKPVLKKSESFKDSIHYQNMAGEKLNSDIPHEFSGEEYLNKRVKSVDRLMRDNLNGDNHELPIINSGFPANQTSDSSKLVNPPHFIYAYNQYGEAMIINTEKVVGHYHNTNLDHSHFHSPYNQNQPQYYPSPNTINENRSQSNSPQINHKAYHSQEIHKPAEPEFVFKDANYKRQPTLYDESLLTRKFKEITTERSGSRFPPIPNTTDSTQSQTTGYASHHKKKEISYEQYTLRDFRNIKQVERGGGLGPNIGSDSYKQLKEKLIRQKNYSKAVLEKNRQELIKTNEKTSREKPMKSDTSTENISFQNVQDVLVSTRDNDKLEAVLHKPLEQTSNEQVTIQREETKSSNFQKMGSASSKELINKREAMLNYAKSIQEKQIRKKEIKSHGSKVHSANIKKEVEKSAIHELINNSDLDRLLQRHEDDKKIADQIRIKLGKIS 775
[Close]
BLAST of SMED30013884 vs. Planmine SMEST
Match: SMESG000049063.1 (SMESG000049063.1)

HSP 1 Score: 1400.57 bits (3624), Expect = 0.000e+0
Identity = 745/754 (98.81%), Postives = 748/754 (99.20%), Query Frame = 2 
Query:  101 DVERVYVDWPEIDSEEFRFISSRLEDGEMTPLYFQHHIQDNQYNIFNINQLRFADKSRSEPAANDRYEDLXXXXXXXXXXXXXVPPLDLISQNSSIEIPGAKGVIDIXXXXXXXXXXXXXXXYKNQSLQNFERDSLDVENINHFNENKGNQSYPLLSTTLPEIQHSDLMLNPGEYDTSRYNKPASNVSRKFSEISVASQYKSELSSAESHHVQRLENEKAIFEAAKQKYKQTVSKSSQNSAESHQPEYIQELSPAKNLKSKPTMLVAPQIKQQLYNTDKTPNFVELNKISTCPQKQSNQTSYASKFIERHHKESPKPVLKKSESFKDSIHYQNMSGEKLNSDIPHEFSGEEYLNKRVKSVDRFMRDNPNGDNHELPIINSGFPANQTSDSSKLVSPPHFIYAYNQYGEAMIINTEKVVGHYHNTNLDHSHFHSPYNQNQPQYYPSPNTINENRSQSNSPQINHKAYHSQEIHKPAEPEFVFKDANYKRQPTLYDESLLTRKFKEITTERSGSRFPPIPNTTDSTQSQTTGYASHHKKKEISYEQYTLRDFRNIKQVERGGGLGPNIGSDSYKQLKEKLIRQKNYSKAVLEKNRQELIKTNEKTSREKPMKSDTSTENISFQNVQDVLVSTRDNDKLEAVLHKPLEQTSNEQVTIQREETKSSNFQKMGSASSKELINKREAMLNYAXXXXXXXXXXXXXXXHGSKVHSANIKKEVEKSAIHELINNSDLDRLLQRHEDDKKIADQIRIKLGKIS 2362
            DVERVYVDWPEIDSEEFRFISSRLEDGEMTPLYFQHHIQDNQYNIF+INQLRFADKSRSEPAANDRYEDLSKKKISKKLKNSSVPPLDLISQNSSIEIPGAKGVIDIDLRSSSESLSDDSEEYKNQSLQNFERDSLDVENINHFNENKGNQSYPLLSTTLPEIQHSDLMLNPGEYDTSRYNKPASNVSRKFSEISVASQYKSELSSAESHHVQRLENEKAIFEAAKQKYKQ VSKSSQNSAESHQPEYI E SPAKNLKSKPTMLVAPQIKQQLYNTDKTPNFVELNKISTCP KQSNQTSYASKFIERHHKESPKPVLKKSESFKDSIHYQNM+GEKLNSDIPHEFSGEEYLNKRVKSVDR MRDN NGDNHELPIINSGFPANQTSDSSKLV+PPHFIYAYNQYGEAMIINTEKVVGHYHNTNLDHSHFHSPYNQNQPQYYPSPNTINENRSQSNSPQINHKAYHSQEIHKPAEPEFVFKDANYKRQPTLYDESLLTRKFKEITTERSGSRFPPIPNTTDSTQSQTTGYASHHKKKEISYEQYTLRDFRNIKQVERGGGLGPNIGSDSYKQLKEKLIRQKNYSKAVLEKNRQELIKTNEKTSREKPMKSDTSTENISFQNVQDVLVSTRDNDKLEAVLHKPLEQTSNEQVTIQREETKSSNFQKMGSASSKELINKREAMLNYAKSIQEKQIRKKEIKSHGSKVHSANIKKEVEKSAIHELINNSDLDRLLQRHEDDKKIADQIRIKLGKIS
Sbjct:   20 DVERVYVDWPEIDSEEFRFISSRLEDGEMTPLYFQHHIQDNQYNIFDINQLRFADKSRSEPAANDRYEDLSKKKISKKLKNSSVPPLDLISQNSSIEIPGAKGVIDIDLRSSSESLSDDSEEYKNQSLQNFERDSLDVENINHFNENKGNQSYPLLSTTLPEIQHSDLMLNPGEYDTSRYNKPASNVSRKFSEISVASQYKSELSSAESHHVQRLENEKAIFEAAKQKYKQNVSKSSQNSAESHQPEYIPEHSPAKNLKSKPTMLVAPQIKQQLYNTDKTPNFVELNKISTCPHKQSNQTSYASKFIERHHKESPKPVLKKSESFKDSIHYQNMAGEKLNSDIPHEFSGEEYLNKRVKSVDRLMRDNLNGDNHELPIINSGFPANQTSDSSKLVNPPHFIYAYNQYGEAMIINTEKVVGHYHNTNLDHSHFHSPYNQNQPQYYPSPNTINENRSQSNSPQINHKAYHSQEIHKPAEPEFVFKDANYKRQPTLYDESLLTRKFKEITTERSGSRFPPIPNTTDSTQSQTTGYASHHKKKEISYEQYTLRDFRNIKQVERGGGLGPNIGSDSYKQLKEKLIRQKNYSKAVLEKNRQELIKTNEKTSREKPMKSDTSTENISFQNVQDVLVSTRDNDKLEAVLHKPLEQTSNEQVTIQREETKSSNFQKMGSASSKELINKREAMLNYAKSIQEKQIRKKEIKSHGSKVHSANIKKEVEKSAIHELINNSDLDRLLQRHEDDKKIADQIRIKLGKIS 773
[Close]
BLAST of SMED30013884 vs. Planmine SMEST
Match: SMESG000049063.1 (SMESG000049063.1)

HSP 1 Score: 1024.23 bits (2647), Expect = 0.000e+0
Identity = 530/540 (98.15%), Postives = 533/540 (98.70%), Query Frame = 2 
Query:  743 LENEKAIFEAAKQKYKQTVSKSSQNSAESHQPEYIQELSPAKNLKSKPTMLVAPQIKQQLYNTDKTPNFVELNKISTCPQKQSNQTSYASKFIERHHKESPKPVLKKSESFKDSIHYQNMSGEKLNSDIPHEFSGEEYLNKRVKSVDRFMRDNPNGDNHELPIINSGFPANQTSDSSKLVSPPHFIYAYNQYGEAMIINTEKVVGHYHNTNLDHSHFHSPYNQNQPQYYPSPNTINENRSQSNSPQINHKAYHSQEIHKPAEPEFVFKDANYKRQPTLYDESLLTRKFKEITTERSGSRFPPIPNTTDSTQSQTTGYASHHKKKEISYEQYTLRDFRNIKQVERGGGLGPNIGSDSYKQLKEKLIRQKNYSKAVLEKNRQELIKTNEKTSREKPMKSDTSTENISFQNVQDVLVSTRDNDKLEAVLHKPLEQTSNEQVTIQREETKSSNFQKMGSASSKELINKREAMLNYAXXXXXXXXXXXXXXXHGSKVHSANIKKEVEKSAIHELINNSDLDRLLQRHEDDKKIADQIRIKLGKIS 2362
             +NEKAIFEAAKQKYKQ VSKSSQNSAESHQPEYI E SPAKNLKSKPTMLVAPQIKQQLYNTDKTPNFVELNKISTCP KQSNQTSYASKFIERHHKESPKPVLKKSESFKDSIHYQNM+GEKLNSDIPHEFSGEEYLNKRVKSVDR MRDN NGDNHELPIINSGFPANQTSDSSKLV+PPHFIYAYNQYGEAMIINTEKVVGHYHNTNLDHSHFHSPYNQNQPQYYPSPNTINENRSQSNSPQINHKAYHSQEIHKPAEPEFVFKDANYKRQPTLYDESLLTRKFKEITTERSGSRFPPIPNTTDSTQSQTTGYASHHKKKEISYEQYTLRDFRNIKQVERGGGLGPNIGSDSYKQLKEKLIRQKNYSKAVLEKNRQELIKTNEKTSREKPMKSDTSTENISFQNVQDVLVSTRDNDKLEAVLHKPLEQTSNEQVTIQREETKSSNFQKMGSASSKELINKREAMLNYAKSIQEKQIRKKEIKSHGSKVHSANIKKEVEKSAIHELINNSDLDRLLQRHEDDKKIADQIRIKLGKIS
Sbjct:   28 FKNEKAIFEAAKQKYKQNVSKSSQNSAESHQPEYIPEHSPAKNLKSKPTMLVAPQIKQQLYNTDKTPNFVELNKISTCPHKQSNQTSYASKFIERHHKESPKPVLKKSESFKDSIHYQNMAGEKLNSDIPHEFSGEEYLNKRVKSVDRLMRDNLNGDNHELPIINSGFPANQTSDSSKLVNPPHFIYAYNQYGEAMIINTEKVVGHYHNTNLDHSHFHSPYNQNQPQYYPSPNTINENRSQSNSPQINHKAYHSQEIHKPAEPEFVFKDANYKRQPTLYDESLLTRKFKEITTERSGSRFPPIPNTTDSTQSQTTGYASHHKKKEISYEQYTLRDFRNIKQVERGGGLGPNIGSDSYKQLKEKLIRQKNYSKAVLEKNRQELIKTNEKTSREKPMKSDTSTENISFQNVQDVLVSTRDNDKLEAVLHKPLEQTSNEQVTIQREETKSSNFQKMGSASSKELINKREAMLNYAKSIQEKQIRKKEIKSHGSKVHSANIKKEVEKSAIHELINNSDLDRLLQRHEDDKKIADQIRIKLGKIS 567
[Close]
BLAST of SMED30013884 vs. Planmine SMEST
Match: SMESG000049207.1 (SMESG000049207.1)

HSP 1 Score: 628.632 bits (1620), Expect = 0.000e+0
Identity = 303/312 (97.12%), Postives = 305/312 (97.76%), Query Frame = 2 
Query:  749 NEKAIFEAAKQKYKQTVSKSSQNSAESHQPEYIQELSPAKNLKSKPTMLVAPQIKQQLYNTDKTPNFVELNKISTCPQKQSNQTSYASKFIERHHKESPKPVLKKSESFKDSIHYQNMSGEKLNSDIPHEFSGEEYLNKRVKSVDRFMRDNPNGDNHELPIINSGFPANQTSDSSKLVSPPHFIYAYNQYGEAMIINTEKVVGHYHNTNLDHSHFHSPYNQNQPQYYPSPNTINENRSQSNSPQINHKAYHSQEIHKPAEPEFVFKDANYKRQPTLYDESLLTRKFKEITTERSGSRFPPIPNTTDSTQSQT 1684
            NEKAIFEAAKQKYKQ VSKSSQNSAESHQPEYIQE SPAKNLKSKPTMLVAPQIKQQLYNTDKTPNFVELNKISTCP KQSNQTSYASKFIERHHKESPKPVLKKSESFKDSIHYQNM+GEKLNSDIPHEFSGEEYLNKRVKSVDR MRDN NGDNHELPIINSGFPANQTSDSSKLV+PPHFIYAYNQYGEAMIINTEKVVGHYHNTNLDHSHFHSPYNQNQPQYYPSPNTINENRSQSNSPQINHKAYHSQEIHKPAEPEF FKDANYKRQPTLYDESLLTRKFKEITTERSGSRFPPIPNTTDSTQSQ 
Sbjct:  225 NEKAIFEAAKQKYKQNVSKSSQNSAESHQPEYIQEHSPAKNLKSKPTMLVAPQIKQQLYNTDKTPNFVELNKISTCPHKQSNQTSYASKFIERHHKESPKPVLKKSESFKDSIHYQNMAGEKLNSDIPHEFSGEEYLNKRVKSVDRLMRDNLNGDNHELPIINSGFPANQTSDSSKLVNPPHFIYAYNQYGEAMIINTEKVVGHYHNTNLDHSHFHSPYNQNQPQYYPSPNTINENRSQSNSPQINHKAYHSQEIHKPAEPEFAFKDANYKRQPTLYDESLLTRKFKEITTERSGSRFPPIPNTTDSTQSQV 536
[Close]
BLAST of SMED30013884 vs. Planmine SMEST
Match: SMESG000049205.1 (SMESG000049205.1)

HSP 1 Score: 201.445 bits (511), Expect = 1.199e-59
Identity = 103/117 (88.03%), Postives = 107/117 (91.45%), Query Frame = 2 
Query: 1796 IGSDSYKQLKEKLIRQKNYSKAVLEKNRQELIKTNEKTSREKPMKSDTSTENISFQNVQDVLVSTRDNDKLEAVLHKPLEQTSNEQVTIQREETKSSNFQKMGSASSKELINKREAM 2146
               D  K+ KEKLIRQKNYSKAVLEKNRQELIKT EKTS EKPMKSDTSTENISFQN+QDVLVS RDNDKLEAVLHKPLEQTSNEQV IQREETKSSNFQKMGSASSKELINKR+A+
Sbjct:   87 CCRDYKKKEKEKLIRQKNYSKAVLEKNRQELIKTKEKTSSEKPMKSDTSTENISFQNLQDVLVSARDNDKLEAVLHKPLEQTSNEQVKIQREETKSSNFQKMGSASSKELINKRDAV 203
The following BLAST results are available for this feature:
BLAST of SMED30013884 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30013884 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30013884 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30013884 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30013884 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30013884 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30013884 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30013884 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30013884 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30013884 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30013884 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30013884 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30013884 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30013884 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000049063.10.000e+098.84SMESG000049063.1[more]
SMESG000049063.10.000e+098.81SMESG000049063.1[more]
SMESG000049063.10.000e+098.15SMESG000049063.1[more]
SMESG000049207.10.000e+097.12SMESG000049207.1[more]
SMESG000049205.11.199e-5988.03SMESG000049205.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30013884 ID=SMED30013884|Name=SMED30013884|organism=Schmidtea mediterranea sexual|type=transcript|length=2411bp
GATATTTTATTTTATTTTGTGATAAATTTTATTATTTATGACAATGTTTA
ATGGTTCCTCAGAGAAGGAGTTTTCAGAGAAAAATTTTGAAACTAACGAA
GACGTAGAAAGAGTGTATGTTGATTGGCCGGAAATTGATTCCGAGGAATT
TCGTTTCATTAGCAGCAGACTGGAGGACGGAGAGATGACTCCGCTATACT
TCCAGCATCATATTCAAGATAATCAATACAATATTTTTAATATAAATCAA
TTGAGATTTGCAGATAAATCCAGGAGTGAACCTGCGGCCAATGACAGATA
TGAAGATTTATCAAAAAAGAAAATATCTAAAAAATTAAAAAACTCATCCG
TTCCGCCTCTTGATTTAATATCTCAAAATAGTAGTATTGAAATTCCAGGA
GCCAAAGGTGTAATTGATATTGACCTAAGATCGAGCTCAGAATCTCTTTC
TGACGATTCAGAAGAATACAAAAATCAGTCATTGCAAAATTTTGAGCGTG
ATTCGTTAGATGTTGAAAACATAAATCATTTCAATGAAAATAAAGGAAAT
CAAAGTTACCCTTTGCTCAGCACAACATTGCCAGAAATTCAGCATTCTGA
TCTCATGTTAAATCCAGGAGAATACGACACTTCCAGATATAATAAGCCTG
CTTCGAACGTTTCCAGGAAGTTTTCAGAGATAAGTGTTGCATCTCAATAC
AAATCTGAATTGTCCAGCGCTGAAAGTCATCATGTCCAAAGATTAGAAAA
CGAAAAAGCCATATTCGAAGCTGCGAAACAGAAATATAAACAAACTGTTT
CTAAAAGTAGTCAAAACTCTGCAGAATCACATCAACCAGAATACATTCAA
GAACTTTCTCCAGCTAAAAACCTGAAATCAAAGCCTACAATGTTAGTAGC
ACCTCAAATCAAGCAACAACTTTACAATACAGATAAAACTCCCAATTTTG
TGGAATTGAATAAAATCTCTACATGCCCTCAAAAGCAATCCAATCAAACA
TCATATGCATCCAAGTTTATCGAAAGACATCACAAAGAATCTCCGAAACC
TGTTTTGAAGAAATCCGAGTCTTTTAAAGATTCGATTCACTATCAAAATA
TGTCAGGTGAAAAATTAAATAGTGATATCCCTCATGAATTCTCCGGCGAG
GAATATCTCAATAAACGAGTGAAATCGGTTGATAGGTTCATGAGAGATAA
TCCTAATGGAGACAACCACGAGTTACCTATTATCAACTCCGGTTTCCCCG
CAAATCAAACTTCAGATTCTTCAAAATTAGTAAGCCCGCCACATTTTATA
TACGCTTATAATCAGTATGGAGAAGCTATGATTATTAATACAGAAAAGGT
TGTTGGTCACTATCATAATACAAATCTTGACCATTCTCATTTCCATTCTC
CTTATAATCAAAACCAACCGCAATATTACCCTTCGCCAAATACCATAAAC
GAAAATAGAAGTCAGTCAAATTCTCCACAAATAAATCATAAAGCGTATCA
CAGTCAAGAAATCCATAAGCCCGCTGAACCTGAATTCGTATTCAAAGATG
CGAATTATAAAAGGCAACCAACTTTGTATGATGAAAGTTTGTTGACGAGG
AAATTCAAGGAAATAACAACTGAAAGAAGTGGTTCAAGATTTCCACCGAT
TCCAAATACCACTGACTCGACACAATCTCAGACTACCGGGTATGCATCTC
ATCATAAAAAGAAGGAAATCAGTTATGAACAATATACATTAAGAGATTTC
AGAAATATCAAACAAGTGGAAAGAGGAGGCGGACTAGGGCCAAACATCGG
ATCAGATTCGTATAAACAATTGAAAGAAAAGTTAATCAGACAAAAGAATT
ATTCTAAAGCAGTGCTTGAAAAGAATCGTCAAGAATTGATCAAAACTAAT
GAAAAGACATCTAGAGAAAAGCCAATGAAATCAGACACATCAACAGAAAA
CATATCATTTCAGAACGTCCAAGATGTGTTAGTTTCAACAAGGGATAATG
ATAAGTTGGAAGCAGTACTTCATAAACCTTTAGAACAAACCAGCAACGAA
CAAGTCACAATTCAACGCGAGGAAACCAAATCTAGCAATTTCCAAAAGAT
GGGGTCAGCATCATCTAAAGAATTAATAAATAAAAGAGAGGCGATGCTGA
ATTACGCGAAATCAATTCAAGAAAAACAAATCAGAAAGAAAGAAATCAAA
TCGCATGGGTCAAAGGTTCATTCAGCAAATATAAAGAAGGAAGTAGAAAA
AAGTGCAATTCACGAGTTGATTAACAACTCTGATCTCGATCGCCTCCTCC
AAAGACACGAAGATGATAAGAAAATAGCCGATCAAATCAGAATAAAACTT
GGAAAAATTTCTTGAAATTTTTGTGTGCAAGCTGGCTTTTGCACAATTTT
GAGGACTCTGA
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protein sequence of SMED30013884-orf-1

>SMED30013884-orf-1 ID=SMED30013884-orf-1|Name=SMED30013884-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=776bp
MTMFNGSSEKEFSEKNFETNEDVERVYVDWPEIDSEEFRFISSRLEDGEM
TPLYFQHHIQDNQYNIFNINQLRFADKSRSEPAANDRYEDLSKKKISKKL
KNSSVPPLDLISQNSSIEIPGAKGVIDIDLRSSSESLSDDSEEYKNQSLQ
NFERDSLDVENINHFNENKGNQSYPLLSTTLPEIQHSDLMLNPGEYDTSR
YNKPASNVSRKFSEISVASQYKSELSSAESHHVQRLENEKAIFEAAKQKY
KQTVSKSSQNSAESHQPEYIQELSPAKNLKSKPTMLVAPQIKQQLYNTDK
TPNFVELNKISTCPQKQSNQTSYASKFIERHHKESPKPVLKKSESFKDSI
HYQNMSGEKLNSDIPHEFSGEEYLNKRVKSVDRFMRDNPNGDNHELPIIN
SGFPANQTSDSSKLVSPPHFIYAYNQYGEAMIINTEKVVGHYHNTNLDHS
HFHSPYNQNQPQYYPSPNTINENRSQSNSPQINHKAYHSQEIHKPAEPEF
VFKDANYKRQPTLYDESLLTRKFKEITTERSGSRFPPIPNTTDSTQSQTT
GYASHHKKKEISYEQYTLRDFRNIKQVERGGGLGPNIGSDSYKQLKEKLI
RQKNYSKAVLEKNRQELIKTNEKTSREKPMKSDTSTENISFQNVQDVLVS
TRDNDKLEAVLHKPLEQTSNEQVTIQREETKSSNFQKMGSASSKELINKR
EAMLNYAKSIQEKQIRKKEIKSHGSKVHSANIKKEVEKSAIHELINNSDL
DRLLQRHEDDKKIADQIRIKLGKIS*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000016pharynx
PLANA:0000034epidermis
PLANA:0000054dorsal region of the epidermis
PLANA:0000099neuron
PLANA:0000418head
PLANA:0002032epidermal cell
PLANA:0003116parenchymal cell
Vocabulary: INTERPRO
TermDefinition
IPR027968JHY
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 233..253
NoneNo IPR availableCOILSCoilCoilcoord: 607..627
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 250..267
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 250..282
IPR027968Jhy proteinPFAMPF15261JHYcoord: 581..637
e-value: 2.3E-7
score: 31.6