SMED30013870

Overview
NameSMED30013870
Smed IDSMED30013870
Length (bp)1810
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30013870 (SMED30013870) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30013870 (SMED30013870) in cells (dots) of each of the 12 neoblast clusters.

 

back to top

 

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30013870 (SMED30013870) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30013870 (SMED30013870) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

back to top

 

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

back to top
Anatomical Expression

PAGE et. al., 2020



SMED30013870

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 21

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
Smed sexual biotypeSMED30013870h1SMcG0015448 Contig5201newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30013870h1SMcG0015448 Contig5201uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30013870h1SMcG0016706 Contig4309uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30013870h1SMcG0016706 Contig4309newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30013870h1SMcG0019640 Contig5201newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30013870h1SMcG0019640 Contig5201uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30013870h1SMcG0019640 Contig4309uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30013870h1SMcG0019640 Contig4309newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
nervous systemSMED30013870h1SMcG0019640 dd_Smed_v4_3255_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30013870h1SMcG0019640 dd_Smed_v4_3255_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30013870h1SMcG0019640 dd_Smed_v4_3255_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neuronSMED30013870h1SMcG0019640 dd_Smed_v4_3255_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		whole organism asexual adult colorimetric in situ hybridization evidence
parapharyngeal regionSMED30013870h1SMcG0019640 dd_Smed_v4_3255_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30013870h1SMcG0019640 dd_Smed_v4_3255_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymaSMED30013870h1SMcG0019640 dd_Smed_v4_3255_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
non-ciliated neuronSMED30013870h1SMcG0019640 dd_Smed_v4_3255_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cilated neuronSMED30013870h1SMcG0019640 dd_Smed_v4_3255_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30013870h1SMcG0019640 Contig36709newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30013870h1SMcG0019640 Contig36709uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
secretory systemSMED30013870h1SMcG0019640 dd_Smed_v6_3255_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30013870h1SMcG0019640 dd_Smed_v4_3255_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017		whole organism asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30013870 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.018828:5995..9357 -8796
v31.024505:2422..5786 -8105
Homology
[Close]
BLAST of SMED30013870 vs. Planmine SMEST
Match: SMESG000014746.1 (SMESG000014746.1)

HSP 1 Score: 657.907 bits (1696), Expect = 0.000e+0
Identity = 341/374 (91.18%), Postives = 345/374 (92.25%), Query Frame = 2 
Query:  323 QNLRSVYAQCCSLIEQLGGLDTNNMDKRIYFVSSTELFDIRINNNNTCLSNANIKKRHEEFELFEMQLSERIERPRPYKMHFYRNEMKTLNDDLQKIFTKMAKKIGNIDIEASVRPYEDGKMLLENFKTTISKESQXXXXXXXXXXXXXXNKMLNTTSMKDKEGIHKQIADHHSLIGKAIDELLHNLYSEYSWLINNLIGNEQGQEIAVEPLAQFYGMVKAMNAQQGEME-PFISFVRMQSDPPGYRAEIRNSAVEVPVNSDDGNDGQNGTGARPQAEGGIVASIINSPKKIVNLAFGFVRNKANYIIEFTNNKLADLDQKVHKNDAEIINEVTRCISRIENAFNLKVDELITKLNDKINLRKDYKEILSIHFE 1441
            QNLRSVYAQCCSLIEQLGGLDTNNMDKRIYFVSSTELFDIRINNNNTCLSNANIKKRHEEFELFEMQLSERIERPRPYKMHFYRNEMKTLNDDLQKIFTKMAKKIGNIDIEASVRPYEDGKMLLENFKTTISKESQKVKLECKEK++CNV KMLNTT+M+DKEGIHKQIADHHSLIGKAIDELLHNLYSEYSWLINNLIGNEQGQEIAVEPLAQFY MVK MNAQQGEME  FISFVRMQSDP GYR EIRNSAVEVPVNS  GNDGQNGTGARP A  GI         KIVN    FVRN ANYII  TN KLADLDQKVHKNDAEIINEVTRCISRIENAFNLKVDELITKLNDKINLRKDYKEILSIHFE
Sbjct: 1410 QNLRSVYAQCCSLIEQLGGLDTNNMDKRIYFVSSTELFDIRINNNNTCLSNANIKKRHEEFELFEMQLSERIERPRPYKMHFYRNEMKTLNDDLQKIFTKMAKKIGNIDIEASVRPYEDGKMLLENFKTTISKESQKVKLECKEKIECNVIKMLNTTNMEDKEGIHKQIADHHSLIGKAIDELLHNLYSEYSWLINNLIGNEQGQEIAVEPLAQFYEMVKPMNAQQGEMELQFISFVRMQSDPSGYRVEIRNSAVEVPVNSAGGNDGQNGTGARPNAGWGI---------KIVNSPIEFVRNSANYIIGNTNKKLADLDQKVHKNDAEIINEVTRCISRIENAFNLKVDELITKLNDKINLRKDYKEILSIHFE 1774
[Close]
BLAST of SMED30013870 vs. Planmine SMEST
Match: SMESG000014746.1 (SMESG000014746.1)

HSP 1 Score: 630.172 bits (1624), Expect = 0.000e+0
Identity = 328/361 (90.86%), Postives = 332/361 (91.97%), Query Frame = 2 
Query:  323 QNLRSVYAQCCSLIEQLGGLDTNNMDKRIYFVSSTELFDIRINNNNTCLSNANIKKRHEEFELFEMQLSERIERPRPYKMHFYRNEMKTLNDDLQKIFTKMAKKIGNIDIEASVRPYEDGKMLLENFKTTISKESQXXXXXXXXXXXXXXNKMLNTTSMKDKEGIHKQIADHHSLIGKAIDELLHNLYSEYSWLINNLIGNEQGQEIAVEPLAQFYGMVKAMNAQQGEME-PFISFVRMQSDPPGYRAEIRNSAVEVPVNSDDGNDGQNGTGARPQAEGGIVASIINSPKKIVNLAFGFVRNKANYIIEFTNNKLADLDQKVHKNDAEIINEVTRCISRIENAFNLKVDELITKLNDKINL 1402
            QNLRSVYAQCCSLIEQLGGLDTNNMDKRIYFVSSTELFDIRINNNNTCLSNANIKKRHEEFELFEMQLSERIERPRPYKMHFYRNEMKTLNDDLQKIFTKMAKKIGNIDIEASVRPYEDGKMLLENFKTTISKESQKVKLECKEK++CNV KMLNTT+M+DKEGIHKQIADHHSLIGKAIDELLHNLYSEYSWLINNLIGNEQGQEIAVEPLAQFY MVK MNAQQGEME  FISFVRMQSDP GYR EIRNSAVEVPVNS  GNDGQNGTGARP A  GI         KIVN    FVRN ANYII  TN KLADLDQKVHKNDAEIINEVTRCISRIENAFNLKVDELITKLNDKINL
Sbjct: 1410 QNLRSVYAQCCSLIEQLGGLDTNNMDKRIYFVSSTELFDIRINNNNTCLSNANIKKRHEEFELFEMQLSERIERPRPYKMHFYRNEMKTLNDDLQKIFTKMAKKIGNIDIEASVRPYEDGKMLLENFKTTISKESQKVKLECKEKIECNVIKMLNTTNMEDKEGIHKQIADHHSLIGKAIDELLHNLYSEYSWLINNLIGNEQGQEIAVEPLAQFYEMVKPMNAQQGEMELQFISFVRMQSDPSGYRVEIRNSAVEVPVNSAGGNDGQNGTGARPNAGWGI---------KIVNSPIEFVRNSANYIIGNTNKKLADLDQKVHKNDAEIINEVTRCISRIENAFNLKVDELITKLNDKINL 1761
[Close]
BLAST of SMED30013870 vs. Planmine SMEST
Match: SMESG000070111.1 (SMESG000070111.1)

HSP 1 Score: 115.546 bits (288), Expect = 3.263e-27
Identity = 77/198 (38.89%), Postives = 122/198 (61.62%), Query Frame = 2 
Query:  323 QNLRSVYAQCCSLIEQLGGLDTNNMDKRIYFVSSTELFDIRINNNNTCLSNANIKKRHEEFELFEMQLSERIERPRPYKMHFYRNEMKTLNDDLQKIFTKMAKKIGNIDIEASVRPYEDGKMLLENFKTTISKESQXXXXXXXXXXXXXXNKMLNTTSMKDKEGIHKQIADHHSLIGKAIDELLHNLYSEYSWLINNL 916
            +  +++  +C  L+ + GG  T ++DKRI F+S+ E+F  RI N     SN N K R+ +FE FE Q+ E I+ P+  K   Y+ E+KTL  +L  I  +++K+I NID E+ V+ YE  K     FK    ++ +K++L+CKE ++C V KMLNT ++ +KE I++QI  H+ LI K+I +L   L  EYS L +++
Sbjct:  261 ETYKNLVGKCFGLVGKFGGPKTKDIDKRIIFISAIEVFGYRIKNKEP--SNRNQKIRYADFERFEDQIEEYIQNPQQLKTRRYKREIKTLLKELNIIIVELSKQINNIDFESCVKRYEGYKTQALIFKEITRRDCEKLQLQCKENIECKVTKMLNTINIDNKE-INEQITQHYDLINKSISDLFQELEREYSKLASDI 455
[Close]
BLAST of SMED30013870 vs. Planmine SMEST
Match: SMESG000014747.1 (SMESG000014747.1)

HSP 1 Score: 109.768 bits (273), Expect = 6.019e-25
Identity = 114/374 (30.48%), Postives = 173/374 (46.26%), Query Frame = 2 
Query:  332 RSVYAQCCSLIEQLGGLDTNNMDKRIYFVSSTELFDIRINNNNTCLSNANIKKRHEEFELFEMQLSERIERPRPYKMHFYRNEMKTLNDDLQKIFTKMAKKIGNIDIEASVRPYEDGKMLLENFKTTISKESQXXXXXXXXXXXXXXNKMLNTTSMKDKEGIHKQIADHHSLIGKAIDELLHNLYSEYSWLINNLIGNEQGQEIAVEPLAQFYGMVKAMNAQQGEMEP-----FISFVRMQSDPPGYRAEIRNSAVEVPVNSDDGNDGQNGTGARPQAEGGIVASIINSPKKIVNLAFGFVRNKANYIIEFTNNKLADLDQKVHKNDAEIINEVTRCISRIENAFNLKVDELITKLNDKINLRKDYKEILSIHF 1438
            +++  +C +LI+   G  T ++DKRIYFVS+ EL DIRIN  +  L+ +  K+R+EEF  FE  +SE I+     ++   R E+    ++ + +  K+ K+I  ID ++SV   E  KM  E F   I K  +K K EC EK+KCNV  MLNTT+  DK+ I  +IA H+  I ++   L+  LY +Y  LI  L+G  QG EI+ E +      +   N+ + +++P     F+SF+                                     P   G I  + IN                     E +   L ++D+ +H ND   +  V   IS I+  F  K   L+ + N +INLR  YK  L   F
Sbjct:  250 KALKGRCQNLIKTFMGKQTKDIDKRIYFVSAKELLDIRINKKD--LNGSKEKERYEEFLHFENYISEYIQNYETSEIC--RTEIDIERNNFKNLVEKLKKRINKIDFDSSVGKLEKDKMQTERFTKEIQKICEKFKSECNEKIKCNVTTMLNTTTF-DKKIIQNKIAKHYFGINRSFRALIKELYEKYGSLI-RLLGEAQGAEISTEQIQ--LNDISQNNSMEVDLDPGVATRFLSFI-------------------------------------PIISGFITNAYINKM----------------LTKEISIEDLNEIDKTIHSNDDGKLKMVDDNISNIKFYFTSKAAALMDRQNREINLRNRYKNYLHDFF 562
[Close]
BLAST of SMED30013870 vs. Planmine SMEST
Match: SMESG000014753.1 (SMESG000014753.1)

HSP 1 Score: 65.4698 bits (158), Expect = 7.343e-11
Identity = 50/187 (26.74%), Postives = 91/187 (48.66%), Query Frame = 2 
Query:  338 VYAQCCSLIEQLGGLDTNNMDKRIYFVSSTELFDIRINNNNTCL-SNANIKKRHEEFELFEMQLSERIERPRPYKMHFYRNEMKTLNDDLQKIFTKMAKKIGNIDIEASVRPYEDGKMLLENFKTTISKESQXXXXXXXXXXXXXXNKMLNTTSMKDKEGIHKQIADHHSLIGKAIDELLHNLYSEY 895
            +  +C   + +L     + +  RIYF S+ E+  IRI NN++ + S+ N+KKR E+F  FE  L + I  P+  K   Y  E+K + D L   F K    I N    + +  YE     +E+FK TI  ++  V+    ++L+   N+++++  ++  E +  Q+    S +   + E     Y ++
Sbjct:  263 IKEECSKFLRKLEITKEDEIYDRIYFFSAREMSQIRIENNDSLVDSDPNVKKRFEDFMRFEYNLKKYINDPQDNKTRRYMQEIKNIQDFLNTEFMKFQADIFNEKNNSLIPKYEKWMKDMEDFKATILSKNDDVQNSLLKRLEDIHNEIIHSPDLRSSEWVTSQLEHFTSEMKLKLQEAQLKQYKDF 449
The following BLAST results are available for this feature:
BLAST of SMED30013870 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30013870 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30013870 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30013870 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30013870 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30013870 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30013870 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30013870 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30013870 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30013870 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30013870 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30013870 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30013870 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30013870 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000014746.10.000e+091.18SMESG000014746.1[more]
SMESG000014746.10.000e+090.86SMESG000014746.1[more]
SMESG000070111.13.263e-2738.89SMESG000070111.1[more]
SMESG000014747.16.019e-2530.48SMESG000014747.1[more]
SMESG000014753.17.343e-1126.74SMESG000014753.1[more]
back to top
Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30013870 ID=SMED30013870|Name=SMED30013870|organism=Schmidtea mediterranea sexual|type=transcript|length=1810bp
GGTAATATTTTGACCCGAATTCACAAATCAAATTAAGTAAATATGAAAAT
TGGATAATTTGTAACTAATCAAAATCATGAATTTGTATTGTATATGCGAC
TTGTATATGTGCGTGTGTACGTGAGACCTTTTGTTATATCATTGCTTGTG
AGTCGTATGCGTCTTGCACAAGTATGACGAAAATAAAGTAAATTATTTAA
TTTATAACTCTTTTCTTTCGCAAGTAAATGGCTGCAAATAAAATACTTTT
TAAGTTTTTAATACTTTTTTAATTGAGATGACCAAATTGCCAGCAATGTT
TATCTAATATATTTATGCATTTCAGAATCTGCGTTCTGTTTATGCTCAAT
GTTGCTCGCTTATCGAACAATTGGGGGGACTCGATACTAATAATATGGAC
AAAAGAATTTATTTCGTTTCATCAACAGAGCTATTCGATATTCGCATAAA
CAACAACAATACATGTCTGTCCAATGCAAATATCAAAAAACGGCATGAGG
AATTTGAACTATTTGAAATGCAGCTTTCAGAACGCATTGAAAGGCCGAGG
CCATACAAAATGCATTTCTACAGAAATGAAATGAAGACATTGAATGATGA
TTTGCAAAAAATATTTACTAAAATGGCAAAGAAAATTGGAAACATTGACA
TCGAGGCCTCAGTGAGACCCTATGAGGACGGCAAAATGCTTTTAGAGAAC
TTCAAAACAACGATCTCGAAAGAATCCCAAAAGGTGAAGTTAGAATGTAA
AGAAAAACTCAAATGCAACGTAAACAAAATGTTGAATACAACAAGTATGA
AGGACAAGGAAGGAATACACAAACAAATTGCGGATCATCATTCACTTATT
GGCAAGGCAATAGATGAGTTACTGCACAATTTGTATTCGGAGTATTCCTG
GCTGATAAATAACCTGATAGGAAATGAGCAAGGTCAGGAAATTGCAGTTG
AACCTTTGGCACAATTCTATGGAATGGTTAAGGCAATGAATGCACAACAA
GGTGAAATGGAACCGTTTATATCATTTGTTCGCATGCAATCAGACCCCCC
TGGATATAGAGCAGAAATACGAAATAGTGCAGTGGAAGTGCCGGTAAATT
CAGACGATGGAAATGATGGCCAGAATGGGACAGGAGCAAGACCTCAAGCT
GAAGGTGGAATTGTGGCTAGCATTATTAACTCTCCCAAGAAAATTGTTAA
CTTAGCATTTGGATTTGTACGCAACAAGGCAAATTATATTATTGAATTTA
CTAACAACAAATTGGCAGATCTGGATCAAAAGGTCCATAAAAATGATGCT
GAAATTATTAATGAAGTTACAAGATGCATTTCTCGGATTGAAAATGCTTT
CAATTTGAAAGTAGATGAATTAATAACAAAATTAAATGATAAAATTAATC
TGCGTAAAGATTACAAAGAAATTTTGTCAATTCATTTTGAATAACAATTA
AAACAATTTTATATTTTCAATTTTTATTGTTTATTTTGGGATTTTGGTTA
CTTGTTTTGTTTCAGTGATTTAATTGAGCAAAAGCAGCGACGCAATCACA
ATAAATGATGTAATGATATCATTGGATCCCCTTATTATCCCTCGGTGGCC
CCAGCTTGATGTATGACTCCTGCCATTTTTGAGGAAGCCAGTTTCAAATT
TGTTTTTTCAATTCCTGATTCATTGGATCCAGATTTCAAAGCTTCAATGA
TCAATGCTAGCTTCATGTTTTGAACTCACCTCCTTTTATACCATTGATTA
ATGTATAAGTCTGTATCTGTATGTGTTGGGTTTAAATTTAATGAAATAAT
ATGAGTCGGA
back to top

protein sequence of SMED30013870-orf-1

>SMED30013870-orf-1 ID=SMED30013870-orf-1|Name=SMED30013870-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=350bp
MDKRIYFVSSTELFDIRINNNNTCLSNANIKKRHEEFELFEMQLSERIER
PRPYKMHFYRNEMKTLNDDLQKIFTKMAKKIGNIDIEASVRPYEDGKMLL
ENFKTTISKESQKVKLECKEKLKCNVNKMLNTTSMKDKEGIHKQIADHHS
LIGKAIDELLHNLYSEYSWLINNLIGNEQGQEIAVEPLAQFYGMVKAMNA
QQGEMEPFISFVRMQSDPPGYRAEIRNSAVEVPVNSDDGNDGQNGTGARP
QAEGGIVASIINSPKKIVNLAFGFVRNKANYIIEFTNNKLADLDQKVHKN
DAEIINEVTRCISRIENAFNLKVDELITKLNDKINLRKDYKEILSIHFE*
back to top
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000034epidermis
PLANA:0000099neuron
PLANA:0000484secretory system
PLANA:0002032epidermal cell
PLANA:0003117parapharyngeal cell