SMED30013851

Overview
NameSMED30013851
Smed IDSMED30013851
Length (bp)734
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30013851 (SMED30013851) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30013851 (SMED30013851) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30013851 (SMED30013851) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30013851 (SMED30013851) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30013851

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 9

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
head regionSMED30013851h1SMcG0008854 SmedASXL_007268SmedAsxl_ww_GCZZ01PMID:27034770
Currie et al., 2016		whole organism asexual adult RNA-sequencing evidence
nervous systemSMED30013851h1SMcG0008854 dd_Smed_v4_16226_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
head regionSMED30013851h1SMcG0008854 dd_Smed_v6_16226_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017		whole organism asexual adult RNA-sequencing evidence
oocyteSMED30013851h1SMcG0008854 Contig48290uc_Smed_v2PMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite RNA-sequencing evidence
oocyteSMED30013851h1SMcG0008854 Contig48290newmark_estsPMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite RNA-sequencing evidence
vitelline glandSMED30013851h1SMcG0008854 Contig48290uc_Smed_v2PMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite RNA-sequencing evidence
vitelline glandSMED30013851h1SMcG0008854 Contig48290newmark_estsPMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite RNA-sequencing evidence
reproductive organSMED30013851h1SMcG0008854 Contig48290uc_Smed_v2PMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite RNA-sequencing evidence
reproductive organSMED30013851h1SMcG0008854 Contig48290newmark_estsPMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of SMED30013851 vs. TrEMBL
Match: R7V1A0 (Uncharacterized protein OS=Capitella teleta OX=283909 GN=CAPTEDRAFT_200340 PE=4 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.493e-18
Identity = 60/172 (34.88%), Postives = 92/172 (53.49%), Query Frame = 2 
Query:  125 DPTRDNFLRLSAEYDKVNDDLKRIQGYIETLEEEYNQCKMMDVFRRYQKLKGMIKRITMHLKMPGMTACAGAKPLGISAIGNLAQGTKDMVKRNEQARKREEQIKKMTSDELIRETKRIEDSLKNKKSQVAFISDAIRKMEIHYEESRNMNPFLRYQALKKIIKNVTKSSLI 640
            D  R N L LSAE  +V ++ K ++G +E L  EY   K +D FRRY  LKGMIKR  +HLK   +T+     P  +   G          K+ E+ RKREE I  ++ DE+ +E   I++ +K  + +++ + D I +M+  YE S+      RY+ +K +IK V  +  I
Sbjct:   17 DVRRVNEL-LSAECSQVQEEYKHLRGVVEQLSREYEDSKEVDFFRRYGMLKGMIKRSVLHLK---LTSNEEHNP-HVPTCG----------KQKEENRKREEHIVGLSKDEITQENDEIQEQIKEYRRKISMMKDLIEQMDHSYEVSKRYIAVQRYRLMKVMIKTVVHNKWI 173
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BLAST of SMED30013851 vs. TrEMBL
Match: A0A0R3SJC9 (Uncharacterized protein OS=Hymenolepis diminuta OX=6216 GN=HDID_LOCUS5042 PE=4 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 6.146e-18
Identity = 51/186 (27.42%), Postives = 97/186 (52.15%), Query Frame = 2 
Query:  119 LKDPTRDNFLRLSAEYDKVNDDLKRIQGYIETLEEEYNQCK---MMDVFRRYQKLKGMIKRITMHLKMPGMTACAGAKPLGISAIGNLAQGTKDM---------VKRNEQARKREEQIKKMTSDELIRETKRIEDSLKNKKSQVAFISDAIRKMEIHYEESRNMNPFLRYQALKKIIKNVTKSSLI 640
            + DP +  +++LS E D+++ + KR++G+++   EEY   K   MMD +RRY++L  M+K++ +HL++            G S  G+  +GT            VK  E  +K        T+++L RET+++ +   + ++++  + D I ++   Y+E +   P LRY  LK  IK+   ++ I
Sbjct:   81 IGDPNKPKYMQLSMENDELHAEWKRLKGFVQNFHEEYKASKGAVMMDPYRRYKRLCAMVKKLVLHLRLNDPAPNLSVTNEGESGRGSFLKGTPSFAGGQVLQSSVKEREMRQKHSNMCDSFTTEQLARETEKLREKNNDLQNRIDLLIDNINELNDSYDECKRSAPLLRYHHLKIAIKSFLANNSI 266
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BLAST of SMED30013851 vs. TrEMBL
Match: A0A564ZAE9 (Uncharacterized protein OS=Hymenolepis diminuta OX=6216 GN=WMSIL1_LOCUS14077 PE=4 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.519e-17
Identity = 51/186 (27.42%), Postives = 96/186 (51.61%), Query Frame = 2 
Query:  119 LKDPTRDNFLRLSAEYDKVNDDLKRIQGYIETLEEEYNQCK---MMDVFRRYQKLKGMIKRITMHLKMPGMTACAGAKPLGISAIGNLAQGTKDM---------VKRNEQARKREEQIKKMTSDELIRETKRIEDSLKNKKSQVAFISDAIRKMEIHYEESRNMNPFLRYQALKKIIKNVTKSSLI 640
            + DP +  +++LS E D+++ + KR++G+++   EEY   K   MMD +RRY++L  M+K++ +HL++            G S  G+  +GT            VK  E  +K        T+++L RET+++     + ++++  + D I ++   Y+E +   P LRY  LK  IK+   ++ I
Sbjct:   81 IGDPNKPKYMQLSMENDELHAEWKRLKGFVQNFHEEYKASKGAVMMDPYRRYKRLCAMVKKLVLHLRLNDPAPNLSVTNEGESGRGSFLKGTPSFAGGQVLQSSVKEREMRQKHSNMCDSFTTEQLARETEKLRGKNNDLQNRIDLLIDNINELNDSYDECKRSAPLLRYHHLKIAIKSFLANNSI 266
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BLAST of SMED30013851 vs. TrEMBL
Match: A0A087VX85 (Uncharacterized protein OS=Echinococcus multilocularis OX=6211 GN=EmuJ_000043700 PE=4 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.509e-17
Identity = 51/182 (28.02%), Postives = 96/182 (52.75%), Query Frame = 2 
Query:  119 LKDPTRDNFLRLSAEYDKVNDDLKRIQGYIETLEEEYNQCK---MMDVFRRYQKLKGMIKRITMHLKM---PGMTACAGAKPLGISAIGNLAQGT--KDMVKRNEQARKREEQIKKMTSDELIRETKRIEDSLKNKKSQVAFISDAIRKMEIHYEESRNMNPFLRYQALKKIIKNVTKSSLI 640
            + DP R  +++L+ E D+++ + KR++GY +   EEY + K   M+D +RRY++L  M+K++ +HL++     ++   G +  G     + + G   +  VK  E  +K       +T+++L RET+++ D     +S++  + D I K+   YE  +    FLRY  LK   K   +S+  
Sbjct:   81 IGDPNRPKYMQLAMENDELHAEWKRLKGYAQNFREEYKESKEAMMLDPYRRYKRLCAMVKKLVLHLRLNDSAPLSGAVGGRGSGPKHGPSFSSGQVLQSYVKEREMRQKHTNVCDSLTTEQLARETEKLRDKNSELQSRIDLLIDGINKLSTAYEMCKRSPFFLRYFHLKVAAKVFIESTCF 262
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BLAST of SMED30013851 vs. TrEMBL
Match: A0A0R3T3D8 (Uncharacterized protein OS=Rodentolepis nana OX=102285 GN=HNAJ_LOCUS1514 PE=4 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 5.775e-17
Identity = 52/172 (30.23%), Postives = 93/172 (54.07%), Query Frame = 2 
Query:  125 DPTRDNFLRLSAEYDKVNDDLKRIQGYIETLEEEYNQCK---MMDVFRRYQKLKGMIKRITMHLKM----PGMTACAGAKPLGISAI-GNLAQGTKDMVKRNEQARKREEQIKKMTSDELIRETKRIEDSLKNKKSQVAFISDAIRKMEIHYEESRNMNPFLRYQALKKIIK 616
            DP R  +++LS E D+++ + KR++ +++   EEY   K   MMD +RRY++L  M+K++ +HL++    P      GA     S++ G + Q T   VK  E  +K        T++EL RET ++ +   + ++++  + D I ++   Y++ +   P LRY  LK  IK
Sbjct:   82 DPNRPKYMQLSLENDELHAEWKRLRSFVQNFHEEYKASKEALMMDPYRRYKRLCAMVKKLVLHLRLSDPTPSSVNNGGAGAARASSLKGQVLQST---VKEREMRQKHCNMCDSYTTEELARETDKLRERNVDLQNRIDLLIDNINELSDSYDKCKRTAPLLRYHHLKNAIK 250
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BLAST of SMED30013851 vs. Planmine SMEST
Match: SMESG000032554.1 (SMESG000032554.1)

HSP 1 Score: 402.134 bits (1032), Expect = 1.635e-144
Identity = 195/195 (100.00%), Postives = 195/195 (100.00%), Query Frame = 2 
Query:   65 MAGFKSWLKRGKDGSFDILKDPTRDNFLRLSAEYDKVNDDLKRIQGYIETLEEEYNQCKMMDVFRRYQKLKGMIKRITMHLKMPGMTACAGAKPLGISAIGNLAQGTKDMVKRNEQARKREEQIKKMTSDELIRETKRIEDSLKNKKSQVAFISDAIRKMEIHYEESRNMNPFLRYQALKKIIKNVTKSSLIRDT 649
            MAGFKSWLKRGKDGSFDILKDPTRDNFLRLSAEYDKVNDDLKRIQGYIETLEEEYNQCKMMDVFRRYQKLKGMIKRITMHLKMPGMTACAGAKPLGISAIGNLAQGTKDMVKRNEQARKREEQIKKMTSDELIRETKRIEDSLKNKKSQVAFISDAIRKMEIHYEESRNMNPFLRYQALKKIIKNVTKSSLIRDT
Sbjct:    1 MAGFKSWLKRGKDGSFDILKDPTRDNFLRLSAEYDKVNDDLKRIQGYIETLEEEYNQCKMMDVFRRYQKLKGMIKRITMHLKMPGMTACAGAKPLGISAIGNLAQGTKDMVKRNEQARKREEQIKKMTSDELIRETKRIEDSLKNKKSQVAFISDAIRKMEIHYEESRNMNPFLRYQALKKIIKNVTKSSLIRDT 195
[Close]
BLAST of SMED30013851 vs. Planmine SMEST
Match: SMESG000032554.1 (SMESG000032554.1)

HSP 1 Score: 298.13 bits (762), Expect = 8.108e-104
Identity = 154/195 (78.97%), Postives = 158/195 (81.03%), Query Frame = 2 
Query:   65 MAGFKSWLKRGKDGSFDILKDPTRDNFLRLSAEYDKVNDDLKRIQGYIETLEEEYNQCKMMDVFRRYQKLKGMIKRITMHLKMPGMTACAGAKPLGISAIGNLAQGTKDMVKRNEQARKREEQIKKMTSDELIRETKRIEDSLKNKKSQVAFISDAIRKMEIHYEESRNMNPFLRYQALKKIIKNVTKSSLIRDT 649
            MAGFKSWLKRGKDGSFDILKDPTRDNFLR + ++ K N                               +  MIKRITMHLKMPGMTACAGAKPLGISAIGNLAQGTKDMVKRNEQARKREEQIKKMTSDELIRETKRIEDSLKNKKSQVAFISDAIRKMEIHYEESRNMNPFLRYQALKKIIKNVTKSSLIRDT
Sbjct:    1 MAGFKSWLKRGKDGSFDILKDPTRDNFLRATLKHWKRN-------------------------------ITRMIKRITMHLKMPGMTACAGAKPLGISAIGNLAQGTKDMVKRNEQARKREEQIKKMTSDELIRETKRIEDSLKNKKSQVAFISDAIRKMEIHYEESRNMNPFLRYQALKKIIKNVTKSSLIRDT 164
[Close]
BLAST of SMED30013851 vs. Planmine SMEST
Match: SMESG000044339.1 (SMESG000044339.1)

HSP 1 Score: 180.259 bits (456), Expect = 9.358e-57
Identity = 87/200 (43.50%), Postives = 136/200 (68.00%), Query Frame = 2 
Query:   68 AGFKSWLKRGKD---GSFDILKDPTRDNFLRLSAEYDKVNDDLKRIQGYIETLEEEYNQCKMMDVFRRYQKLKGMIKRITMHLKMPGMTACAG---AKPLGISAIGNLAQGTKDMVKRNEQARKREEQIKKMTSDELIRETKRIEDSLKNKKSQVAFISDAIRKMEIHYEESRNMNPFLRYQALKKIIKNVTKSSLIRDT 649
            AG   WLK+  +   G+F+++KDP R+++ RL+ EYDK  ++ KR++ +++ LE +Y+  K +DV RRY  LKGMIKR  +HLK+P +T+         +GISA+GNL QGT+  VKR+EQA+K EE+++ + S+E+I E +++E+S+K+ K + A I+DAI  +E+ Y  S+   P  RY ALK+IIK      L+RD+
Sbjct:    5 AGVSGWLKKSTNTSLGTFELMKDPVREDYQRLAEEYDKSCEEYKRLRSFVDILEADYSSSKSLDVIRRYLSLKGMIKRTVLHLKLPHITSGKSDLNPNAVGISAMGNLLQGTRTFVKRSEQAKKWEERLQTLKSEEIIAENRKMEESIKDYKRKTAMITDAINNLEVEYTASKIYFPIRRYPALKQIIKRTIHDQLLRDS 204
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BLAST of SMED30013851 vs. Planmine SMEST
Match: SMESG000069423.1 (SMESG000069423.1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.184e-22
Identity = 50/176 (28.41%), Postives = 98/176 (55.68%), Query Frame = 2 
Query:  116 ILKDPTRDNFLRLSAEYDKVNDDLKRIQGYIETLEEEYNQCKMMDVFRRYQKLKGMIKRITMHLKMPGMTA-CAGAKPLGISAIGNLAQGTKDMVKRNEQARKREEQIKKMTSDELIRETKRIEDSLKNKKSQVAFISDAIRKMEIHYEESRNMNPFLRYQALKKIIKNVTKSSLI 640
            +LKDP ++ F+++  ++D +  + KR++ Y+E L+++Y   +  +   RY +LK MIKR  MHLK+  +   C+ A                  +K  E ARK EE+ + +TSDE+ +E + I+++++  + ++  +  AI  +E HY +++    + RYQ +K ++K++     I
Sbjct:   83 LLKDPEKEAFIQMYEQHDDLQTEYKRLKSYVEHLKDDYEMSRGFEAMTRYNRLKVMIKRTIMHLKVSSVAGDCSNA------------------IKIKELARKSEERYESLTSDEIDKEKQEIKENIEEFQQRIDILISAITDLEEHYNDAKTYFIWTRYQMMKAMVKDLIHKPTI 240
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BLAST of SMED30013851 vs. Planmine SMEST
Match: SMESG000023281.1 (SMESG000023281.1)

HSP 1 Score: 54.6842 bits (130), Expect = 1.011e-8
Identity = 40/146 (27.40%), Postives = 74/146 (50.68%), Query Frame = 2 
Query:  188 KRIQGYIETLEEEYNQCKMMDVF-RRYQKLKGMIKRITMHLKMPGMTACAGAKPLGISAIGNLAQGTKDMVKRNEQARKREEQIKKMTSDELIRETKRIEDSLKNKKSQVAFISDAIRKMEIHYEESRNMNPFLRYQALKKIIKNV 622
            KR++ +I+TL ++Y+  +  + +  RY+ LK MIKR  MHLK                 +G   Q +  + K  E  RK EE+ +K+ S+ LI E   +++ ++  +++ A + +    ++  Y  S+      RYQ L  +IK++
Sbjct:   99 KRLKQHIDTLAKDYSCLQTSNNWLSRYRMLKSMIKRCVMHLK-----------------VGEDTQISAGVAK--EINRKCEEKYEKLNSETLIEEKTMLKNQIEMHQARTAILREVFSDLDTQYTASKKYVALTRYQMLNALIKDL 225
The following BLAST results are available for this feature:
BLAST of SMED30013851 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30013851 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30013851 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30013851 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30013851 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30013851 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30013851 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30013851 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
R7V1A03.493e-1834.88Uncharacterized protein OS=Capitella teleta OX=283... [more]
A0A0R3SJC96.146e-1827.42Uncharacterized protein OS=Hymenolepis diminuta OX... [more]
A0A564ZAE91.519e-1727.42Uncharacterized protein OS=Hymenolepis diminuta OX... [more]
A0A087VX853.509e-1728.02Uncharacterized protein OS=Echinococcus multilocul... [more]
A0A0R3T3D85.775e-1730.23Uncharacterized protein OS=Rodentolepis nana OX=10... [more]
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BLAST of SMED30013851 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30013851 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30013851 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30013851 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30013851 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30013851 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000032554.11.635e-144100.00SMESG000032554.1[more]
SMESG000032554.18.108e-10478.97SMESG000032554.1[more]
SMESG000044339.19.358e-5743.50SMESG000044339.1[more]
SMESG000069423.16.184e-2228.41SMESG000069423.1[more]
SMESG000023281.11.011e-827.40SMESG000023281.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30013851 ID=SMED30013851|Name=SMED30013851|organism=Schmidtea mediterranea sexual|type=transcript|length=734bp
ATTTTGATTTTGCATGAAATTTTTCAATTTCAAAATATTCATTCTTTGAA
ATAGTTCTGATATTATGGCAGGTTTTAAAAGTTGGCTGAAAAGAGGAAAG
GATGGCAGCTTCGACATTCTCAAAGATCCGACTCGGGACAATTTTCTAAG
GTTATCTGCTGAATATGACAAAGTAAATGACGACCTCAAACGAATACAGG
GCTACATTGAAACATTGGAAGAGGAGTATAACCAGTGCAAAATGATGGAT
GTGTTCCGGAGATATCAGAAATTAAAAGGAATGATCAAGAGAATTACTAT
GCATTTAAAAATGCCCGGAATGACGGCATGTGCTGGAGCGAAACCGCTGG
GAATAAGTGCAATAGGTAATCTGGCTCAAGGTACTAAAGATATGGTCAAA
AGAAATGAACAAGCCCGAAAAAGAGAAGAGCAGATTAAAAAAATGACATC
AGATGAACTGATACGAGAAACAAAAAGAATAGAAGACAGCTTGAAAAACA
AAAAGAGTCAAGTAGCTTTCATTTCAGATGCCATAAGAAAAATGGAAATT
CATTACGAAGAGTCCCGAAACATGAATCCATTTTTGAGGTATCAGGCGTT
GAAGAAAATAATAAAAAATGTCACCAAAAGTTCGCTGATTAGGGATACCT
AGAGTTCTGACGGAGGAAGCATTTTACCGAACCAAACAATATTTTACCTG
ACTTGAGCTGTATTAAATTTTTTGTGTGATCGAG
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protein sequence of SMED30013851-orf-1

>SMED30013851-orf-1 ID=SMED30013851-orf-1|Name=SMED30013851-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=196bp
MAGFKSWLKRGKDGSFDILKDPTRDNFLRLSAEYDKVNDDLKRIQGYIET
LEEEYNQCKMMDVFRRYQKLKGMIKRITMHLKMPGMTACAGAKPLGISAI
GNLAQGTKDMVKRNEQARKREEQIKKMTSDELIRETKRIEDSLKNKKSQV
AFISDAIRKMEIHYEESRNMNPFLRYQALKKIIKNVTKSSLIRDT*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000074oocyte
PLANA:0000099neuron
PLANA:0000231vitelline gland
PLANA:0000418head
PLANA:0002089reproductive organ
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 34..54