SMED30013850

Overview
NameSMED30013850
Smed IDSMED30013850
Length (bp)3371
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30013850 (SMED30013850) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30013850 (SMED30013850) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30013850 (SMED30013850) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30013850 (SMED30013850) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30013850

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 10

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
nervous systemSMED30013850SMESG000051170.1 dd_Smed_v4_10305_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30013850SMESG000051170.1 dd_Smed_v4_10305_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cilated neuronSMED30013850SMESG000051170.1 dd_Smed_v4_10305_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30013850SMESG000081995.1 SMESG000080328.1 SMESG000080048.1 SMESG000078665.1 SMESG000077025.1 SMESG000076395.1 SMESG000075858.1 SMESG000066691.1 SMESG000062442.1 SMESG000060496.1 SMESG000054975.1 SMESG000054276.1 SMESG000051957.1 SMESG000049162.1 SMESG000046165.1 SMESG000036894.1 SMESG000035648.1 SMESG000034762.1 SMESG000030928.1 SMESG000030475.1 SMESG000030445.1 SMESG000030069.1 SMESG000029693.1 SMESG000029692.1 SMESG000029599.1 SMESG000029355.1 SMESG000027993.1 SMESG000027217.1 SMESG000022058.1 SMESG000020046.1 SMESG000014020.1 SMESG000012961.1 SMESG000010709.1 SMESG000007675.1 SMESG000006952.1 SMESG000004166.1 SMESG000003706.1 SMESG000002779.1 SMESG000002239.1 SMESG000001845.1 SMESG000080313.1 SMESG000066842.1 SMESG000050392.1 SMESG000048356.1 SMESG000042931.1 SMESG000033095.1 SMESG000018900.1 SMESG000017493.1 SMESG000015917.1 SMESG000004121.1 dd_Smed_v4_3574_2_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30013850SMESG000081995.1 SMESG000080328.1 SMESG000080048.1 SMESG000078665.1 SMESG000077025.1 SMESG000076395.1 SMESG000075858.1 SMESG000066691.1 SMESG000062442.1 SMESG000060496.1 SMESG000054975.1 SMESG000054276.1 SMESG000051957.1 SMESG000049162.1 SMESG000046165.1 SMESG000036894.1 SMESG000035648.1 SMESG000034762.1 SMESG000030928.1 SMESG000030475.1 SMESG000030445.1 SMESG000030069.1 SMESG000029693.1 SMESG000029692.1 SMESG000029599.1 SMESG000029355.1 SMESG000027993.1 SMESG000027217.1 SMESG000022058.1 SMESG000020046.1 SMESG000014020.1 SMESG000012961.1 SMESG000010709.1 SMESG000007675.1 SMESG000006952.1 SMESG000004166.1 SMESG000003706.1 SMESG000002779.1 SMESG000002239.1 SMESG000001845.1 SMESG000080313.1 SMESG000066842.1 SMESG000050392.1 SMESG000048356.1 SMESG000042931.1 SMESG000033095.1 SMESG000018900.1 SMESG000017493.1 SMESG000015917.1 SMESG000004121.1 dd_Smed_v4_3574_2_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30013850SMESG000081995.1 SMESG000080328.1 SMESG000080048.1 SMESG000078665.1 SMESG000077025.1 SMESG000076395.1 SMESG000075858.1 SMESG000066691.1 SMESG000062442.1 SMESG000060496.1 SMESG000054975.1 SMESG000054276.1 SMESG000051957.1 SMESG000049162.1 SMESG000046165.1 SMESG000036894.1 SMESG000035648.1 SMESG000034762.1 SMESG000030928.1 SMESG000030475.1 SMESG000030445.1 SMESG000030069.1 SMESG000029693.1 SMESG000029692.1 SMESG000029599.1 SMESG000029355.1 SMESG000027993.1 SMESG000027217.1 SMESG000022058.1 SMESG000020046.1 SMESG000014020.1 SMESG000012961.1 SMESG000010709.1 SMESG000007675.1 SMESG000006952.1 SMESG000004166.1 SMESG000003706.1 SMESG000002779.1 SMESG000002239.1 SMESG000001845.1 SMESG000080313.1 SMESG000066842.1 SMESG000050392.1 SMESG000048356.1 SMESG000042931.1 SMESG000033095.1 SMESG000018900.1 SMESG000017493.1 SMESG000015917.1 SMESG000004121.1 dd_Smed_v4_3574_2_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30013850SMESG000081995.1 SMESG000080328.1 SMESG000080048.1 SMESG000078665.1 SMESG000077025.1 SMESG000076395.1 SMESG000075858.1 SMESG000066691.1 SMESG000062442.1 SMESG000060496.1 SMESG000054975.1 SMESG000054276.1 SMESG000051957.1 SMESG000049162.1 SMESG000046165.1 SMESG000036894.1 SMESG000035648.1 SMESG000034762.1 SMESG000030928.1 SMESG000030475.1 SMESG000030445.1 SMESG000030069.1 SMESG000029693.1 SMESG000029692.1 SMESG000029599.1 SMESG000029355.1 SMESG000027993.1 SMESG000027217.1 SMESG000022058.1 SMESG000020046.1 SMESG000014020.1 SMESG000012961.1 SMESG000010709.1 SMESG000007675.1 SMESG000006952.1 SMESG000004166.1 SMESG000003706.1 SMESG000002779.1 SMESG000002239.1 SMESG000001845.1 SMESG000080313.1 SMESG000066842.1 SMESG000050392.1 SMESG000048356.1 SMESG000042931.1 SMESG000033095.1 SMESG000018900.1 SMESG000017493.1 SMESG000015917.1 SMESG000004121.1 dd_Smed_v4_3574_2_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30013850SMESG000081995.1 SMESG000080328.1 SMESG000080048.1 SMESG000078665.1 SMESG000077025.1 SMESG000076395.1 SMESG000075858.1 SMESG000066691.1 SMESG000062442.1 SMESG000060496.1 SMESG000054975.1 SMESG000054276.1 SMESG000051957.1 SMESG000049162.1 SMESG000046165.1 SMESG000036894.1 SMESG000035648.1 SMESG000034762.1 SMESG000030928.1 SMESG000030475.1 SMESG000030445.1 SMESG000030069.1 SMESG000029693.1 SMESG000029692.1 SMESG000029599.1 SMESG000029355.1 SMESG000027993.1 SMESG000027217.1 SMESG000022058.1 SMESG000020046.1 SMESG000014020.1 SMESG000012961.1 SMESG000010709.1 SMESG000007675.1 SMESG000006952.1 SMESG000004166.1 SMESG000003706.1 SMESG000002779.1 SMESG000002239.1 SMESG000001845.1 SMESG000080313.1 SMESG000066842.1 SMESG000050392.1 SMESG000048356.1 SMESG000042931.1 SMESG000033095.1 SMESG000018900.1 SMESG000017493.1 SMESG000015917.1 SMESG000004121.1 dd_Smed_v4_3574_2_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
muscle cellSMED30013850SMESG000081995.1 SMESG000080328.1 SMESG000080048.1 SMESG000078665.1 SMESG000077025.1 SMESG000076395.1 SMESG000075858.1 SMESG000066691.1 SMESG000062442.1 SMESG000060496.1 SMESG000054975.1 SMESG000054276.1 SMESG000051957.1 SMESG000049162.1 SMESG000046165.1 SMESG000036894.1 SMESG000035648.1 SMESG000034762.1 SMESG000030928.1 SMESG000030475.1 SMESG000030445.1 SMESG000030069.1 SMESG000029693.1 SMESG000029692.1 SMESG000029599.1 SMESG000029355.1 SMESG000027993.1 SMESG000027217.1 SMESG000022058.1 SMESG000020046.1 SMESG000014020.1 SMESG000012961.1 SMESG000010709.1 SMESG000007675.1 SMESG000006952.1 SMESG000004166.1 SMESG000003706.1 SMESG000002779.1 SMESG000002239.1 SMESG000001845.1 SMESG000080313.1 SMESG000066842.1 SMESG000050392.1 SMESG000048356.1 SMESG000042931.1 SMESG000033095.1 SMESG000018900.1 SMESG000017493.1 SMESG000015917.1 SMESG000004121.1 dd_Smed_v4_3574_2_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
head regionSMED30013850SMESG000051170.1 dd_Smed_v6_10305_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017		whole organism asexual adult RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30013850 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.000459:101207..104575 +16784
v31.000421:40536..44070 -9796
v31.000559:92454..95755 +8882
v31.001596:32851..36073 -8698
v31.018131:6355..9577 -8633
Homology
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BLAST of SMED30013850 vs. Planmine SMEST
Match: SMESG000008335.1 (SMESG000008335.1)

HSP 1 Score: 242.662 bits (618), Expect = 6.464e-68
Identity = 113/159 (71.07%), Postives = 137/159 (86.16%), Query Frame = -2 
Query:  875 QWRDVDRTTLTVPIRFAGRYRQALWDRGYSISTYGTPEWPNRNPDDREANTEMLSILIKIEPGRNPAREIRQAAEEALHRFEQLERQYRHLANRQRERLVRINRDITSGCIPSSDGHLPNYGVVYDPEDPTLLKLDAPVHLVVPKSLLQPEIRDILEDR 1351
            QWRD++ TTLTVP RFAGRYRQALWD+GY+IST+GTPEWPNR  ++ + +TE+ S++IK EPGRNPAREIRQ  E  L+R+EQLER+YR+LAN++R RL RIN DIT+G IPSSDGHLP+Y V +DP DP LL+LDAPVHLV PK LLQP+I+DILEDR
Sbjct:   92 QWRDMESTTLTVPSRFAGRYRQALWDQGYTISTHGTPEWPNRRSNNCDEDTELPSLVIKREPGRNPAREIRQETEGLLYRYEQLERKYRYLANQKRRRLARINEDITNGHIPSSDGHLPSYRVAHDPSDPALLELDAPVHLVFPKLLLQPDIKDILEDR 250

HSP 2 Score: 53.9138 bits (128), Expect = 7.269e-7
Identity = 26/40 (65.00%), Postives = 30/40 (75.00%), Query Frame = -2 
Query:  434 KKLSRENNDLHQQCLQLSRELQRIKSTWSESSRVKRLYQK 553
            KKL RENN LHQQC+QLSRELQ IK+TW E S+   +  K
Sbjct:  285 KKLRRENNGLHQQCIQLSRELQWIKATWVEPSQAYEISSK 324
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BLAST of SMED30013850 vs. Planmine SMEST
Match: SMESG000054252.1 (SMESG000054252.1)

HSP 1 Score: 224.172 bits (570), Expect = 8.289e-67
Identity = 113/170 (66.47%), Postives = 127/170 (74.71%), Query Frame = -2 
Query:  875 FLLTLTGECSNQWRDVDRTTLTVPIRFAGRYRQALWDRGYSISTYGTPEWPNRNPDDREANTEMLSILIKIEPGRNPAREIRQAAEEALHRFEQLERQYRHLANRQRERLVRINRDITSGCIPSSDGHLPNYGVVYDPEDPTLLKLDAPVHLVVPKSLLQPEIRDILEDR 1384
            F+    G  S  W+DVD TTLTVP  FAGRY QALW+ GY+ISTYGTP+WP R  +  E + E+ SILIK EPGRNP REIRQ AE  LHR EQLE +YR L  RQ+E L RINRDI SG IPSSD HLP YG+ YD  DP LL+ DA VHLVVPKSLLQP+IRDILED+
Sbjct:    7 FIARSPGTHSGNWKDVDLTTLTVPTLFAGRYTQALWNLGYTISTYGTPKWPYRKTNGPEGDFELPSILIKREPGRNPTREIRQKAEGELHRLEQLEWRYRFLVKRQKEHLARINRDIASGRIPSSDMHLPAYGIAYDHRDPALLEGDALVHLVVPKSLLQPDIRDILEDQ 176
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BLAST of SMED30013850 vs. Planmine SMEST
Match: SMESG000047667.1 (SMESG000047667.1)

HSP 1 Score: 245.358 bits (625), Expect = 5.222e-66
Identity = 116/164 (70.73%), Postives = 140/164 (85.37%), Query Frame = -2 
Query:  875 GECSNQWRDVDRTTLTVPIRFAGRYRQALWDRGYSISTYGTPEWPNRNPDDREANTEMLSILIKIEPGRNPAREIRQAAEEALHRFEQLERQYRHLANRQRERLVRINRDITSGCIPSSDGHLPNYGVVYDPEDPTLLKLDAPVHLVVPKSLLQPEIRDILEDR 1366
            G  S++ RDV+RTTLTVP +FAGRYRQALWDRGYSISTYGTPEWPNRNPD R+ + ++ S++IK EPGRNPAREIRQ +EEAL++ EQLER+YR LAN+Q  RLV+I  DI+SG IP SDG+LP+YGV YDP++P LL LDAPV+LVVPK LLQP+IRD L D+
Sbjct: 1560 GSSSSKCRDVERTTLTVPSKFAGRYRQALWDRGYSISTYGTPEWPNRNPDRRDEDIKLPSLVIKREPGRNPAREIRQESEEALYKLEQLERRYRRLANQQGRRLVKITMDISSGRIPISDGYLPDYGVAYDPKNPALLALDAPVYLVVPKRLLQPDIRDALNDK 1723
[Close]
BLAST of SMED30013850 vs. Planmine SMEST
Match: SMESG000054252.1 (SMESG000054252.1)

HSP 1 Score: 225.328 bits (573), Expect = 2.806e-65
Identity = 113/170 (66.47%), Postives = 127/170 (74.71%), Query Frame = -2 
Query:  875 FLLTLTGECSNQWRDVDRTTLTVPIRFAGRYRQALWDRGYSISTYGTPEWPNRNPDDREANTEMLSILIKIEPGRNPAREIRQAAEEALHRFEQLERQYRHLANRQRERLVRINRDITSGCIPSSDGHLPNYGVVYDPEDPTLLKLDAPVHLVVPKSLLQPEIRDILEDR 1384
            F+    G  S  W+DVD TTLTVP  FAGRY QALW+ GY+ISTYGTP+WP R  +  E + E+ SILIK EPGRNP REIRQ AE  LHR EQLE +YR L  RQ+E L RINRDI SG IPSSD HLP YG+ YD  DP LL+ DA VHLVVPKSLLQP+IRDILED+
Sbjct:    7 FIARSPGTHSGNWKDVDLTTLTVPTLFAGRYTQALWNLGYTISTYGTPKWPYRKTNGPEGDFELPSILIKREPGRNPTREIRQKAEGELHRLEQLEWRYRFLVKRQKEHLARINRDIASGRIPSSDMHLPAYGIAYDHRDPALLEGDALVHLVVPKSLLQPDIRDILEDQ 176
[Close]
BLAST of SMED30013850 vs. Planmine SMEST
Match: SMESG000060519.1 (SMESG000060519.1)

HSP 1 Score: 233.417 bits (594), Expect = 5.917e-63
Identity = 118/171 (69.01%), Postives = 135/171 (78.95%), Query Frame = -2 
Query:  875 TLTGEC----SNQWRDVDRTTLTVPIRFAGRYRQALWDRGYSISTYGTPEWPNRNPDDREANTEMLSILIKIEPGRNPAREIRQAAEEALHRFEQLERQYRHLANRQRERLVRINRDITSGCIPSSDGHLPNYGVVYDPEDPTLLKLDAPVHLVVPKSLLQPEIRDILEDR 1375
            +L GE     S++W DV+RTTLTV  RFAGRY QALWD GYSISTYGT EWP RNP+ R+ +TE+  ILIK EPGRNPAREIRQ AE ALH FE+L+R YR L N+QRE L RI  DI S  IP+ DGHLP+YGV Y+P+DP LL+ D PVHLVVPKSLLQP+IRDILEDR
Sbjct:  842 SLLGETESASSSKWVDVERTTLTVQNRFAGRYHQALWDPGYSISTYGTLEWPCRNPESRDKDTELPCILIKREPGRNPAREIRQKAEGALHHFEKLKRWYRPLTNQQREHLARIIMDIASWRIPNLDGHLPSYGVAYNPDDPVLLESDTPVHLVVPKSLLQPDIRDILEDR 1012
The following BLAST results are available for this feature:
BLAST of SMED30013850 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30013850 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30013850 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30013850 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30013850 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30013850 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30013850 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30013850 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30013850 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30013850 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30013850 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30013850 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30013850 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30013850 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000008335.16.464e-6871.07SMESG000008335.1[more]
SMESG000054252.18.289e-6766.47SMESG000054252.1[more]
SMESG000047667.15.222e-6670.73SMESG000047667.1[more]
SMESG000054252.12.806e-6566.47SMESG000054252.1[more]
SMESG000060519.15.917e-6369.01SMESG000060519.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30013850 ID=SMED30013850|Name=SMED30013850|organism=Schmidtea mediterranea sexual|type=transcript|length=3371bp
AGCTGGTTCAGCGAGCTACCGATGAAAGGTCTGTGCTCGTCTTATTCCTT
TAGGTCCCTTACTTTCCTCGCTTACTTAGGTTAGTTGTCATTCATTTCTA
ATATGGACGATTTTCATTCTCGACATGGTTGATTCAGAAAACAACCAAAT
TAAACAAAAAAATACTTTTATTTGTAATACGGTACAATTTTAATAACATA
AAGAAATTTCAATCTTTGCGTTGTCCTTGTAGCTTCTGACACGCTCGTTC
GGCTCTTACCGCTGGATTCATCTGATTTTGGTAGGCCACTTGGGCTGGGG
CAAGTTCCAGTGGGTACGTGACCGCCCTTCCCTCCTGGTATGCAGCTACA
GCCACCTCCAATCCACGTATTTGGATCCTTTGAGCCTGATTTAGGGCTAT
TTCGTCTTGCCATCCTTTCTGAGCGGCATCAATTTTTTGATATAGCCGTT
TTACCCTGGACGACTCGGACCACGTAGATTTGATCCGCTGGAGTTCGCGG
CTGAGTTGAAGGCATTGTTGGTGCAGGTCGTTGTTCTCTCGGCTGAGCTT
CTTTAGCTCTAGTTTGATTCCTTGGATGGCATCAATTGCTGCAACATATG
AGTAATATTAATATGATATATTAGATACAATATCTAAATCATTTAATGGT
CCTTGGATGAATACATTCCATGATGTCTCATCTAAATACTATAGCCCACT
TTTATTTCGCGAATTAATATTAATAAAAAAAACGTTTTAATTCAATTAAG
CTTTATAAAAGTAATCAACTCAACAATGAACAAAAACAACATTTATTTCT
CGTCATTTATTACAGCGATTCATTCATTGTTCGTTTTTTGCATCAGTCGC
CTTCGGGAGTACACGTGCTCTTCGCCTGTCCTCCAAAATGTCCCTGATCT
CTGGTTGGAGTAAGCTTTTGGGGACGACCAGATGTACGGGCGCATCAAGC
TTTAAAAGAGTTGGATCTTCTGGGTCGTAGACCACTCCATAATTGGGCAA
GTGGCCATCCGAACTCGGAATACACCCACTGGTGATGTCTCTATTAATCC
GCACCAGGCGTTCCCTTTGTCGATTAGCCAGATGCCTATATTGCCGCTCC
AGTTGTTCGAATCTGTGAAGCGCTTCTTCCGCCGCTTGTCGGATTTCTCT
GGCCGGGTTCCTTCCTGGCTCTATTTTGATCAGGATACTCAGCATCTCTG
TATTTGCCTCTCGGTCATCTGGATTTCGATTTGGCCATTCGGGGGTGCCA
TAGGTCGATATGGAGTACCCCCGATCCCACAGGGCTTGGCGATATCTCCC
AGCAAACCTGATTGGGACTGTCAGTGTCGTTCGATCGACGTCCCTCCATT
GATTACTGCATTCACCTGTTAATGTTAACAAAAATTATTTAATTCACATC
TTACTCGCTACCAATCGTTGATCATATACCTCTACACTGATAAAAGGACG
TATGATCATATAACCACTTCTAATTTATGGGCATGGTGAAGATAAGGATA
CAGTTAATACGTAGCTATAAAATCAATTAGCGACTTTCTGGTTCGAATTC
ATCCTACTTCCCTAATAATCAAATTAATTATTAACTCAACTTCTACGATG
ACGCTTTGTTAAACTCGTAACCCCATTATGGGTGAATTATGTGATCATTT
TACATCGGCAACTCGTGTTAACCTAGTCATTATACCAGGGTTATACACCT
ACGTGGTCGACTTGTTATTCCTAGCTGAAAAATGTATAAAGTTCAACATC
CGAAAATTTTATCAGCGACGAAAGGAGCTTGCATGCCGGAATCACTTCAA
CATTAATTAACTATTGTGCGTCTCTTTTAGAATGTATTGCTGTCAAAAAT
TAGATACTTATAATATCTCATTTTAAACTAGATAATCACACATTAATTAA
CACACATTATTAGGTGTCTATTTTAGAACGTATTACTGACAAAACTAATT
ATTTATAATATCTTATTTGAAACTAAATAATTGCAATTCAAAAGAAAATT
TATATTAAATTAACAGAACTTAGAAATATCATCGCAAGTTGGTCTTACCT
GCCGAGAAATCTTTGGGATGAACTCCTTCATGGGCATGCATTTTGTCGGT
ATTGAATTTATCCTGGTAGATCTGTGCCCGTCTCTGTTTTCTCTTGTCAT
TCTTAGCGGAGGTTCCGATCTTCTCAGACATTTCTATCTCGCGTTCGGCT
GGATTTAGTGCATTTAATTTCGACATAATTTCTGTTGAGAATACGGTGTA
TATGACGTCCGTTGCAATCTAGATCACATTTATATAGGCTGTTGATTTTT
GCTGCCCCTTGGACGGGTAGAAACTTGATCTGGCGGTGGCGTTTGCTGAT
TGGTTCTCATTTGAAATTTTCTATCATCGATCAATGAGGGCTGTAATTTT
CTGCAATGGATATCGCCTTGGCGTGTTGGTAATTTCGTATCCTCTGCCAC
TCAGGTAAGGGTTTTGGTAGTGGCATGTCTTATTTTCTGGAGTTTCATAA
TTCGACCTCAATATTTCTTTTGAAAATCACAACTCTTGGAATTTTATCCG
ACAGTAAGATAAAATTGTTTTACGAATTTATTAAATTCTTCCTCAATTTA
GGTCCGATTTGTACACGTTGTACCTGGCTCTACTTGTCCCTCATTTCTCT
CAGTTGGCCCTTGCCGCGGTCTGCGCGTTGGTCTTACAATTGCCGTTACC
CTAGTTCGGCTGGTTTTGGCGGATCGTAAATGTATCGTTTCGACGCTGGT
GGATATATCTGCAGTGTCAATGGGTGGAAGTCGCGGCGAATATCTTGTGA
TGGTTCTCTTTAATAAACAGATTATTGGGATTCGACTTTTTATTTTGAAT
TGGGGTGAGGTTGAATTAGTATCTTATACTGATAGTTATTATGAGTGCAT
ATTCTCGGTAGTTAAAGGCTGAATTAGGATGAACTTATCGGTTAGGTTGG
GTTTATGGCTATTATTTTATGATTTGTAGATCAGGCATTCGGCAGACAAT
ATCGTTTAAATTTTTAATTACATTAACTAGAGTATCGAAAATAAGACGAT
AGTGGGAGCTTGATGTTGAATTATTATCCTAGTTAATAAATTTACGTTAA
TTCTTGTTTATTGACTGGATTAGTTCCACGTCCCTTTAGCCATATGGTTT
TTAGTCATCAAATGTTTCCACTCAAATCCATCATTATTTACCGAATTATT
ATTTCATTTCCCCAAAATAGTTAATAAAGTGTAATTTGACACACCCGTTA
CATCGATTTCCGCAAGCCCCTTTCTCTTTAACTTCAAATTGTTCCTAGTA
GATTTGTATATTCATATTAGATTTTAAGAGTGTCCACTGGACTACTCGGT
GTTAATATTTTAGCAGATGTG
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protein sequence of SMED30013850-orf-1

>SMED30013850-orf-1 ID=SMED30013850-orf-1|Name=SMED30013850-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=124bp
MLSILIKIEPGRNPAREIRQAAEEALHRFEQLERQYRHLANRQRERLVRI
NRDITSGCIPSSDGHLPNYGVVYDPEDPTLLKLDAPVHLVVPKSLLQPEI
RDILEDRRRARVLPKATDAKNEQ*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000099neuron
PLANA:0000418head
Vocabulary: INTERPRO
TermDefinition
IPR019774Aromatic-AA_hydroxylase_C
Vocabulary: biological process
TermDefinition
GO:0055114oxidation-reduction process
Vocabulary: molecular function
TermDefinition
GO:0016714oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced pteridine as one donor, and incorporation of one atom of oxygen