SMED30013817

Overview
NameSMED30013817
Smed IDSMED30013817
Length (bp)1392
Neoblast Clusters

Zeng et. al., 2018



 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30013817

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 4

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
nervous systemSMED30013817h1SMcG0003914 dd_Smed_v4_10629_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30013817h1SMcG0003914 dd_Smed_v4_10629_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
non-ciliated neuronSMED30013817h1SMcG0003914 dd_Smed_v4_10629_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
head regionSMED30013817h1SMcG0003914 dd_Smed_v6_10629_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017		whole organism asexual adult RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30013817 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.006903:26520..27911 -6870
Homology
[Close]
BLAST of SMED30013817 vs. TrEMBL
Match: A0A0H3YK65 (Slc16a-3 OS=Schmidtea mediterranea OX=79327 GN=slc16a-3 PE=2 SV=1)

HSP 1 Score: 373.629 bits (958), Expect = 7.270e-123
Identity = 196/403 (48.64%), Postives = 271/403 (67.25%), Query Frame = -2 
Query:  120 KVFSICVLLVITLNMIFIGGKRRNFGLFVSAFYRSFNGTSLFELNMVGDSYSSLAFILMPFLTSGIAYWNSAYQLAMFIAGIFIFCSSMLTSIVTSAWMLFLTHTLLHGIGSGIVLASCTLVVADYFNKKHPYHVLATSLASSGAYGVLILTPLFAHLIQAYGWRTAFQXXXXXXXXXXXXXXXFYVPEENQYTEIGEKSQIDQTKWKFTTWNHVMENKQTLFWFVDRALNGAIFFALLMNLTEYRRQSGIVDMEIESGSTINIMLGIGECFTFTVTMIIGDHIRGRLVVVQLIGACFSFLSTILMRAVTHSIVATNVITVMLGGSVGMANCVLYASSSEAMNIDGSISLPMSKMMSAFGALLSPFFSGLIIDGYGFEGLFVSLILLTFLRIVCLSTINFILY 1328
            K  SI +L+V T+N+IFIGGKRR FG+F+SAF  +FNGTS+ ELN VGDSYS++AF LMPF+TS   + N +YQ  M  A I +FCS MLTS VT+A  LF+THT+LHGIGS  +L++  L++ +YF+K H YHVLATSL + G YG LI  PL+  ++Q Y WR  F++I ILF + I   ++ YVP+ +      +  +I+  +  F +  ++++NKQ   W +DR    +I + LLMNLT+  R        +E G+ IN+M+G+GE   FT++ +IGD IRG+L    LIGA F+ L  ILM+ V++   A    ++ LG   G+ NC+LYASS E   + GSISLP+S MM AFG +++P FSGL+ID YGF GLF SLI+L  +R++CL  IN ILY
Sbjct:   15 KQLSIFILVVATINIIFIGGKRRTFGIFISAFRSTFNGTSMVELNWVGDSYSAVAFFLMPFITS-FVHRNRSYQKGMLAASILVFCSCMLTSFVTNAAELFITHTVLHGIGSAFILSTSALIIGEYFDKNHRYHVLATSLTTGGPYGSLIFGPLYGFMVQHYDWRFTFRVIAILFFVEISAGILAYVPKPDYQ----KSEEIENYEGAFPSLKYLIQNKQIFLWGIDRICTSSILYGLLMNLTDLLRSMLNGTENLEGGAKINLMMGVGESIIFTISAVIGDKIRGKLPFFHLIGAAFTLLMLILMKTVSYYPYAIIAFSIFLGAGAGVGNCMLYASSEEITFLHGSISLPLSNMMMAFGMIIAPIFSGLLIDMYGFLGLFSSLIILACIRMLCLIGINIILY 412
[Close]
BLAST of SMED30013817 vs. TrEMBL
Match: A0A4S2MEA9 (MFS domain-containing protein OS=Opisthorchis felineus OX=147828 GN=CRM22_000598 PE=4 SV=1)

HSP 1 Score: 337.421 bits (864), Expect = 6.974e-107
Identity = 185/443 (41.76%), Postives = 269/443 (60.72%), Query Frame = -2 
Query:  105 KVFSICVLLVITLNMIFIGGKRRNFGLFVSAFYRSFNGTSLFELNMVGDSYSSLAFILMPFLTSGIAYWNSAYQLAMFIAGIFIFCSSMLTSIVTSAWMLFLTHTLLHGIGSGIVLASCTLVVADYFNKKHPYHVLATSLASSGAYGVLILTPLFAHLIQAYGWRTAFQXXXXXXXXXXXXXXXFYVPEE-NQYT-------------EIGEKSQIDQTK---------------------WKFTTWNHVMENKQTLFWFVDRALNGAIFFALLMNLTEYRRQSGIVDMEIESGSTINIMLGIGECFTFTVTMIIGDHIRGRLVVVQLIGACFSFLSTILMRAVTHSIVATNVITVMLGGSVGMANCVLYASSSEAMNIDGSISLPMSKMMSAFGALLSPFFSGLIIDGYGFEGLFVSLILLTFLRIVCLSTINFILYQKRKL 1328
            + F   VL V  +N+IFIGGKRR FG+FV+A + S+N TS+ ELN +GDSY+SL F LMPF T+ I   N  Y+  MF+AG+ IF S M ++ V     LFLTHT+LHGIGS +VL  C+LV  DYF+K H +HVLAT+  S G YGVL+  PLF++ I  Y W+ AF   GILF+ V  L  + ++P + ++Y+             ++G+K  + Q+K                     W F + +H+  N Q   W  +R L+  + + LLMNLT Y  QS  ++ E+  G+ +N+  GIGE   FT+  +IGD IRG+L +V LIGA FS L  I+++     I    V++ + GG+VG+ N  LYA++ E M + GSI+ PM+KM++  G +++P FSG +IDGYG+ G F+S+ +L  LR+V L+ +  IL+ K K+
Sbjct:   33 RYFCWVVLFVSAINVIFIGGKRRAFGIFVAALHSSYNETSMSELNWIGDSYASLGFFLMPFATTAIVRLNRPYRFTMFLAGVTIFTSCMTSASVPDPGYLFLTHTILHGIGSTLVLCGCSLVTGDYFDKTHRFHVLATAFVSGGPYGVLLFGPLFSYWIHDYSWQEAFIFSGILFLFVTWLGAVTFLPRDMHEYSRAELTLSEPLAERDVGKKDSLKQSKKQSVVANVDLRDQPKASDGRGWAFCSVDHLRNNPQVFLWAFERLLHNVVVYGLLMNLTAYVTQS--LNNELTRGAKVNLYFGIGESIIFTIGALIGDRIRGKLPLVYLIGAAFSALFLIIVQRSYTDINVVYVLSGLTGGAVGVGNTFLYATAEEVMLVHGSIAFPMTKMVAGVGMIIAPAFSGSVIDGYGYRGFFISMAILVSLRVVLLALVCIILHHKHKM 473
[Close]
BLAST of SMED30013817 vs. TrEMBL
Match: A0A419Q2S4 (Uncharacterized protein OS=Clonorchis sinensis OX=79923 GN=CSKR_11621s PE=4 SV=1)

HSP 1 Score: 334.339 bits (856), Expect = 1.357e-105
Identity = 186/443 (41.99%), Postives = 266/443 (60.05%), Query Frame = -2 
Query:  105 KVFSICVLLVITLNMIFIGGKRRNFGLFVSAFYRSFNGTSLFELNMVGDSYSSLAFILMPFLTSGIAYWNSAYQLAMFIAGIFIFCSSMLTSIVTSAWMLFLTHTLLHGIGSGIVLASCTLVVADYFNKKHPYHVLATSLASSGAYGVLILTPLFAHLIQAYGWRTAFQXXXXXXXXXXXXXXXFYVPEENQY--------------TEIGEKSQI---------------DQTK------WKFTTWNHVMENKQTLFWFVDRALNGAIFFALLMNLTEYRRQSGIVDMEIESGSTINIMLGIGECFTFTVTMIIGDHIRGRLVVVQLIGACFSFLSTILMRAVTHSIVATNVITVMLGGSVGMANCVLYASSSEAMNIDGSISLPMSKMMSAFGALLSPFFSGLIIDGYGFEGLFVSLILLTFLRIVCLSTINFILYQKRKL 1328
            + F   VL V  +N+IFIGGKRR FG+FV+A + S+N TS+ ELN +GDSY+SL F LMPF T+ I   N  Y+  MF+AG+ IF S M ++ V     LFLTHT+LHGIGS +VL  C+LV  DYF+K H +HVLAT+  S G YGVL+  PLF++ I  Y W+ AF   GILF+ V  L  + ++P + Q                + G+K ++               DQ K      W F + +H+  N Q   W  +R L+  + + LLMNLT Y  QS  ++ E+  G+ +N+  GIGE   FT+  +IGD IRG+L +V LIGA FS L  I+++     I    V++ + GG+VG+ N  LYA++ E M + GSI+ PM+KM++  G +++P FSG +IDGYG+ G F+S+ +L  LR+V L+ +  IL+ K K+
Sbjct:   33 RYFCWVVLFVSAVNVIFIGGKRRAFGIFVAALHSSYNETSMSELNWIGDSYASLGFFLMPFATTAIVRLNRPYRFTMFLAGVTIFTSCMTSASVPDPGYLFLTHTILHGIGSTLVLCGCSLVTGDYFDKTHRFHVLATAFVSGGPYGVLLFGPLFSYWIHDYSWQEAFVFSGILFLFVTWLGAVTFLPRDMQEYSRAELELAEPLEDRDAGKKDELRKPKKPSVATNIYLHDQPKASDGRGWAFCSVDHLRNNPQVFLWAFERLLHNVVIYGLLMNLTAYVTQS--LNNELIRGAKVNLYFGIGESIIFTIGALIGDRIRGKLPIVYLIGAGFSALFLIIVQRSYTDINVVYVLSGLTGGAVGVGNTFLYATAEEVMLVHGSIAFPMTKMVAGVGMIIAPAFSGSVIDGYGYRGFFISMAILVSLRVVLLALVCIILHHKHKM 473
[Close]
BLAST of SMED30013817 vs. TrEMBL
Match: H2KPP0 (Monocarboxylate transporter 9 OS=Clonorchis sinensis OX=79923 GN=CLF_102350 PE=4 SV=1)

HSP 1 Score: 333.569 bits (854), Expect = 2.187e-105
Identity = 186/443 (41.99%), Postives = 266/443 (60.05%), Query Frame = -2 
Query:  105 KVFSICVLLVITLNMIFIGGKRRNFGLFVSAFYRSFNGTSLFELNMVGDSYSSLAFILMPFLTSGIAYWNSAYQLAMFIAGIFIFCSSMLTSIVTSAWMLFLTHTLLHGIGSGIVLASCTLVVADYFNKKHPYHVLATSLASSGAYGVLILTPLFAHLIQAYGWRTAFQXXXXXXXXXXXXXXXFYVPEENQY--------------TEIGEKSQI---------------DQTK------WKFTTWNHVMENKQTLFWFVDRALNGAIFFALLMNLTEYRRQSGIVDMEIESGSTINIMLGIGECFTFTVTMIIGDHIRGRLVVVQLIGACFSFLSTILMRAVTHSIVATNVITVMLGGSVGMANCVLYASSSEAMNIDGSISLPMSKMMSAFGALLSPFFSGLIIDGYGFEGLFVSLILLTFLRIVCLSTINFILYQKRKL 1328
            + F   VL V  +N+IFIGGKRR FG+FV+A + S+N TS+ ELN +GDSY+SL F LMPF T+ I   N  Y+  MF+AG+ IF S M ++ V     LFLTHT+LHGIGS +VL  C+LV  DYF+K H +HVLAT+  S G YGVL+  PLF++ I  Y W+ AF   GILF+ V  L  + ++P + Q                + G+K ++               DQ K      W F + +H+  N Q   W  +R L+  + + LLMNLT Y  QS  ++ E+  G+ +N+  GIGE   FT+  +IGD IRG+L +V LIGA FS L  I+++     I    V++ + GG+VG+ N  LYA++ E M + GSI+ PM+KM++  G +++P FSG +IDGYG+ G F+S+ +L  LR+V L+ +  IL+ K K+
Sbjct:   33 RYFCWVVLFVSAVNVIFIGGKRRAFGIFVAALHSSYNETSMSELNWIGDSYASLGFFLMPFATTAIVRLNRPYRFIMFLAGVTIFTSCMTSASVPDPGYLFLTHTILHGIGSTLVLCGCSLVTGDYFDKTHRFHVLATAFVSGGPYGVLLFGPLFSYWIHDYSWQEAFVFSGILFLFVTWLGAVTFLPRDMQEYSRAELELAEPLADRDAGKKDELRKPKKPSVATNIYLHDQPKASDGRGWAFCSVDHLRNNPQVFLWAFERLLHNVVIYGLLMNLTAYVTQS--LNNELIRGAKVNLYFGIGESIIFTIGALIGDRIRGKLPIVYLIGAGFSALFLIIVQRSYTDINVVYVLSGLTGGAVGVGNTFLYATAEEVMLVHGSIAFPMTKMVAGVGMIIAPAFSGSVIDGYGYRGFFISMAILVSLRVVLLALVCIILHHKHKM 473
[Close]
BLAST of SMED30013817 vs. TrEMBL
Match: A0A1S8WM16 (Transporter, major facilitator family protein OS=Opisthorchis viverrini OX=6198 GN=X801_08712 PE=4 SV=1)

HSP 1 Score: 332.798 bits (852), Expect = 3.856e-105
Identity = 186/443 (41.99%), Postives = 268/443 (60.50%), Query Frame = -2 
Query:  105 KVFSICVLLVITLNMIFIGGKRRNFGLFVSAFYRSFNGTSLFELNMVGDSYSSLAFILMPFLTSGIAYWNSAYQLAMFIAGIFIFCSSMLTSIVTSAWMLFLTHTLLHGIGSGIVLASCTLVVADYFNKKHPYHVLATSLASSGAYGVLILTPLFAHLIQAYGWRTAFQXXXXXXXXXXXXXXXFYVPEE-NQYT-------------EIGEKSQI---------------DQTK------WKFTTWNHVMENKQTLFWFVDRALNGAIFFALLMNLTEYRRQSGIVDMEIESGSTINIMLGIGECFTFTVTMIIGDHIRGRLVVVQLIGACFSFLSTILMRAVTHSIVATNVITVMLGGSVGMANCVLYASSSEAMNIDGSISLPMSKMMSAFGALLSPFFSGLIIDGYGFEGLFVSLILLTFLRIVCLSTINFILYQKRKL 1328
            + F   VL V  +N+IFIGGKRR FG+FV+A + S+N TS+ ELN +GDSY+SL F LMPF T+ I   N  Y+  MF+AG+ IF S M ++ V     LFLTHT+LHGIGS +VL  C+LV  DYF+K H +HVLAT+  S G YGVL+  PLF++ I  Y W+ AF   GILF+ V  L  + ++P + ++Y+             + G+K  +               DQ K      W F + +H+  N Q   W  +R L+  + + LLMNLT Y  QS  ++ E+  G+ +N+  GIGE   FT+  +IGD IRG+L +V LIGA FS L  I+++     I    V++ + GG+VG+ N  LYA++ E M + GSI+ PM+KM++  G +++P FSG +IDGYG+ G F+S+ +L  LR+V L+ +  IL+ K K+
Sbjct:   33 RYFCWVVLFVSAINVIFIGGKRRAFGIFVAALHSSYNETSMSELNWIGDSYASLGFFLMPFATTAIVRLNRPYRFTMFLAGVTIFTSCMTSASVPDPSYLFLTHTILHGIGSTLVLCGCSLVTGDYFDKTHRFHVLATAFVSGGPYGVLLFGPLFSYWIHDYSWQDAFIFSGILFLFVTWLGAVIFLPRDMHEYSRAELTLSEPLADRDAGKKDDMRKPKKQSAAANIYLRDQPKASDGRGWAFCSVDHLRTNPQVFLWAFERLLHNIVIYGLLMNLTAYVTQS--LNNELIRGAKVNLYFGIGESIIFTIGALIGDRIRGKLPIVYLIGAAFSALFLIIVQRSYTDINVVYVLSGLTGGAVGVGNTFLYATAEEVMLVHGSIAFPMTKMVAGVGMIIAPAFSGSVIDGYGYRGFFISMAILVSLRVVLLALVCIILHHKHKM 473
[Close]
BLAST of SMED30013817 vs. Ensembl Sea Lamprey
Match: si:ch211-234h8.7 (si:ch211-234h8.7 [Source:ZFIN;Acc:ZDB-GENE-061009-16])

HSP 1 Score: 51.6026 bits (122), Expect = 2.525e-7
Identity = 87/384 (22.66%), Postives = 155/384 (40.36%), Query Frame = -2 
Query:   12 MLTSIVTSAWMLFLTHTLLHGIGSGIVLASCTLVVADYFNKKHPYHVLATSLASSGAYGVL-ILTPLFAHLIQAYGWRTAFQXXXXXXX---XXXXXXXXFYVPEENQYTEIGEKSQIDQTKWKFTTWNHVMENKQTLFWFVDRALNGAIFFALLMN------------LTEYRRQSGIVDMEIESGSTINIMLGIGECFTFTVTMIIGDHIRGRLVVVQLIGACFSFL---STILMRAVTHSIVATNVITVMLGGSVGMANCVLYASSSEAMNIDG----SISLPMSKMMSAFGALLSPFFSGLIIDG---YGFEGLFVSLILLTFLRIV-------CLSTINFILYQKRKLTKEMESYNEMEANETTSLNEFNPNPNVSHSN 1064
            +L S  T+  ML+LT  ++ G+G  +      +++  YFNK+ P   LA  LA++G+   L  L+PL   L+++YGWR  F I+G L +       +      P+E+  + + E         + T  +   + K+ L  F      G + +A+  +            +  Y +  GI D +    + +  ++GI + F   +  I+    R R  +  L   CF+ L      LM +  ++        V  G S GM   + +      M I G    S ++ +  +  A   L+ P  +G ++D    Y    L+++  L+T   IV       CL  +    +    L    E     E    T +    P+P+  H+N
Sbjct:  104 ILASFCTNIIMLYLTAGVITGMGLALNFQPSLIMLGRYFNKRRP---LANGLAAAGSPVFLTTLSPLGQMLVKSYGWRGGFLILGGLLLNCCACGAVMRPLVPPKEDAGSGVAESPSPGTAPHRETPVSPKKKQKKNLLDFSVFKNKGFVIYAVAASIMVIGLFVPPVFIVSYAKDMGIEDTK---AAFLLSIIGIIDIFARPLCGILAGVERVRPYITYLF--CFAMLFNGFADLMGSFGNTYGGLATFCVFFGISYGMVGALQF---EVLMAIVGSHVFSSAIGLVLLCEACAVLIGPPSAGRLVDATKNYKLT-LYMAGTLVTISGIVMGVANFFCLPKVQACPHAAPPLGPGKE-----EGQPLTVVTSTEPDPDAMHNN 470
[Close]
BLAST of SMED30013817 vs. Ensembl Nematostella
Match: EDO38356 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SD36])

HSP 1 Score: 55.8398 bits (133), Expect = 2.618e-8
Identity = 47/168 (27.98%), Postives = 81/168 (48.21%), Query Frame = -2 
Query:  822 FSICVLLVITLNMIFIGGKRRNFGLFVSAFYRSFNGTSLFELNMVGDSYSSLAFILMPFLTSGIAYWNSAYQLAMFIAGIFIFCSSMLTSIVTSAWMLFLTHTLLHGIGSGIVLASCTLVVADYFNKKHPYHVLATSLASSG-AYGVLILTPLFAHLIQAYGWRTAFQ 1322
            F +CV    +++ I I G    F + +      FN  S  ++  VG     L F   P   +G+     ++++   +  +    S +LTS   ++  +F ++++L+G+GS +   SC   VA+YF K+     LA    +SG + GVL   P+   L+ AYGWR  F+
Sbjct:  426 FLVCV--SASISTIIILGFSHCFAVVMPVLLNYFN-DSRQKIAWVGSITQCLTFFASPL--AGLLIGKLSFRVTAVLGSLTCCISLVLTSFTKASLHIFFSYSVLYGLGSCLFYMSCVYAVAEYFEKRRG---LALGFLTSGISVGVLAQGPVLQVLLDAYGWRITFR 585

HSP 2 Score: 53.9138 bits (128), Expect = 1.065e-7
Identity = 38/124 (30.65%), Postives = 63/124 (50.81%), Query Frame = -2 
Query:  822 VGDSYSSLAFILMPFLTSGIAYWNSAYQLAMFIAGIFIFCSSMLTSIVTSAWMLFLTHTLLHGIGSGIVLASCTLVVADYFNKKHPYHVLATSLASSG-AYGVLILTPLFAHLIQAYGWRTAFQ 1190
            VG     L F+  P     I  +N  +++   +  +    S +LTS   ++  +F ++++L+G+GS +   SC   VA+YF K+     LA    +SG + GVL   P+   L+ AYGWR  F+
Sbjct:   62 VGSIAQCLTFLASPLAGLLIGRFN--FRVTAVLGSLTCCISLVLTSFTKASLHIFFSYSVLYGLGSCLFYMSCVYAVAEYFEKRRG---LALGFLTSGISVGVLAQGPVLQVLLDAYGWRGTFR 180
[Close]
BLAST of SMED30013817 vs. Ensembl Nematostella
Match: EDO46666 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RPD0])

HSP 1 Score: 53.9138 bits (128), Expect = 8.278e-8
Identity = 32/93 (34.41%), Postives = 50/93 (53.76%), Query Frame = -2 
Query:  822 FIAGIFIFCSSMLTSIVTSAWMLFLTHTLLHGIGSGIVLASCTLVVADYFNKKHPYHVLATSLASSGA-YGVLILTPLFAHLIQAYGWRTAFQ 1097
            FI GI       LTS V +   +++T+ LL G+GSG+      +V+  YF K+ P   LA  +ASSG+  G L+  P    L+  +GW+ + +
Sbjct:   96 FIGGILSVLGLFLTSFVQNPGKMYVTYGLLWGVGSGLSFTPSIIVLGQYFRKRFP---LANGIASSGSGIGGLLAAPFIQFLLSNFGWQNSMR 185
[Close]
BLAST of SMED30013817 vs. Ensembl Nematostella
Match: EDO46850 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RP46])

HSP 1 Score: 53.5286 bits (127), Expect = 8.849e-8
Identity = 50/200 (25.00%), Postives = 90/200 (45.00%), Query Frame = -2 
Query:  687 GKRRNFGLFVSAFYRSFNGTSLFELNMVGDSYSSLAFILMPFLTSGIAYWNS---AYQLAMFIAGIFIFCSSMLTSIVTSAWMLFLTHTLLHGIGSGIVLASCTLVVADYFNKKHPYHVLATSLASSGA-YGVLILTPLFAHLIQAYGWRTAFQXXXXXXXXXXXXXXXFYVPE-ENQYTEIGEKSQIDQTKWKFTTWNH 1271
            G  ++FG+F+      FN       N    +++    + + FL   +A   S   + +    ++G+    S + TS  TS   ++ T+ +L G G+G +L     V   YF  +  Y  L T + +SGA  GV++  P+   +I A GWR   +++  + +I+        VP  +NQ    G K+   +T    + WN+
Sbjct:   31 GFTQSFGVFLPILAEVFNE------NREKTAWAGSIALFLTFLVGPVAALLSQRFSPRTVTLVSGLLCAASLLSTSFATSIVYIYFTYGVLFGTGAGCILNMGYAVARQYFTSR--YRSLTTGVIASGAGVGVIMTGPILQAVIDAVGWRDTLRVMSGIMLIIYTDNASPDVPPADNQTNPSGHKTHCLETFIDCSVWNN 222
[Close]
BLAST of SMED30013817 vs. Ensembl Nematostella
Match: EDO40778 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S697])

HSP 1 Score: 51.6026 bits (122), Expect = 4.821e-7
Identity = 33/94 (35.11%), Postives = 53/94 (56.38%), Query Frame = -2 
Query:  822 IAGIFIFC--SSMLTSIVTSAWMLFLTHTLLHGIGSGIVLASCTLVVADYFNKKHPYHVLATSLASSGA-YGVLILTPLFAHLIQAYGWRTAFQ 1094
            +AG+ I C  S ++ S   +   +F  ++L +G+GS  V  S   V+  YFNK+   H LA  + ++G   GVL L PL   +I+ YGWR+ ++
Sbjct:    1 MAGV-IMCTVSVVVMSFTENIIQMFFAYSLPYGLGSCFVFISGVFVINKYFNKR---HALALGIYNTGVNIGVLTLAPLCQVIIEKYGWRSMYR 90
[Close]
BLAST of SMED30013817 vs. Ensembl Nematostella
Match: EDO46207 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RQQ5])

HSP 1 Score: 51.2174 bits (121), Expect = 5.862e-7
Identity = 62/244 (25.41%), Postives = 109/244 (44.67%), Query Frame = -2 
Query:  576 LNMIFIGGKRRNFGLFVSAFYRSFNGTSLFELNMVGDSYSSLAFILMPFLTSGIAYWNSAYQLAMFIAGIFIFCSSMLTSIVTSAWMLFLTHTLLHGIGSGIVLASCTLVVADYFNKKHPYHVLATSLASSG-AYGVLILTPLFAHLIQAYGWRTAFQXXXXXXXXXXXXXXXFYVPEENQY----TEIGEKSQIDQTKWKFTTWNHVMENKQTLFWFVDRALNGAIFFALLMNLTEYRRQSGI 1292
            L M  + G   +FG+ ++A    F+  S  +   VG    +  F+  P +TS +A      +    + G+FI     LTS   +  ++++T+ LL G G+ +      ++  DYF+K   +  LAT + ++G + G L+L P    L++  GWR A + I  +  + I  A   Y P E +      +   +S  +  K +F   + V+ NK  + W    ++ G  +F     L  Y    GI
Sbjct:   60 LIMFIVYGIHTSFGVLLNALLNHFH-ESKAKTAWVGSIGLNFLFLGSP-VTSRVAE-RYGIRTVTILGGVFISLGLFLTSYAPNIVVIYITYGLLFGSGTSLCGTMALIISVDYFDK---HLSLATGIVAAGCSIGTLVLAPTLQFLVEKLGWRYAVR-ILAMSGVFIACAGFVYRPHERRRETFSNDRATRSLNENKKCEFFDCS-VLRNKAFILWIFTTSIAGFGYFIPHFFLVRYSEDLGI 295
[Close]
BLAST of SMED30013817 vs. Planmine SMEST
Match: SMESG000021812.1 (SMESG000021812.1)

HSP 1 Score: 887.486 bits (2292), Expect = 0.000e+0
Identity = 453/454 (99.78%), Postives = 453/454 (99.78%), Query Frame = -2 
Query:    9 MGFDKGCMKSLMPEKVFSICVLLVITLNMIFIGGKRRNFGLFVSAFYRSFNGTSLFELNMVGDSYSSLAFILMPFLTSGIAYWNSAYQLAMFIAGIFIFCSSMLTSIVTSAWMLFLTHTLLHGIGSGIVLASCTLVVADYFNKKHPYHVLATSLASSGAYGVLILTPLFAHLIQAYGWRTAFQXXXXXXXXXXXXXXXFYVPEENQYTEIGEKSQIDQTKWKFTTWNHVMENKQTLFWFVDRALNGAIFFALLMNLTEYRRQSGIVDMEIESGSTINIMLGIGECFTFTVTMIIGDHIRGRLVVVQLIGACFSFLSTILMRAVTHSIVATNVITVMLGGSVGMANCVLYASSSEAMNIDGSISLPMSKMMSAFGALLSPFFSGLIIDGYGFEGLFVSLILLTFLRIVCLSTINFILYQKRKLTKEMESYNEMEANETTSLNEFNPNPNVSHSNI 1370
            MGFDKGCMKSLMPEKVFSICVLLVITLNMIFIGGKRRNFGLFVSAFYRSFNGTSLFELNMVGDSYSSLAFILMPFLTSGIAYWNSAYQLAMFIAGIFIFCSSMLTSIVTSAWMLFLTHTLLHGIGSGIVLASCTLVVADYFNKKHPYHVLATSLASSGAYGVLILTPLFAHLIQAYGWRTAFQIIGILFVIVIGLAVIFYVPEEN YTEIGEKSQIDQTKWKFTTWNHVMENKQTLFWFVDRALNGAIFFALLMNLTEYRRQSGIVDMEIESGSTINIMLGIGECFTFTVTMIIGDHIRGRLVVVQLIGACFSFLSTILMRAVTHSIVATNVITVMLGGSVGMANCVLYASSSEAMNIDGSISLPMSKMMSAFGALLSPFFSGLIIDGYGFEGLFVSLILLTFLRIVCLSTINFILYQKRKLTKEMESYNEMEANETTSLNEFNPNPNVSHSNI
Sbjct:    1 MGFDKGCMKSLMPEKVFSICVLLVITLNMIFIGGKRRNFGLFVSAFYRSFNGTSLFELNMVGDSYSSLAFILMPFLTSGIAYWNSAYQLAMFIAGIFIFCSSMLTSIVTSAWMLFLTHTLLHGIGSGIVLASCTLVVADYFNKKHPYHVLATSLASSGAYGVLILTPLFAHLIQAYGWRTAFQIIGILFVIVIGLAVIFYVPEENPYTEIGEKSQIDQTKWKFTTWNHVMENKQTLFWFVDRALNGAIFFALLMNLTEYRRQSGIVDMEIESGSTINIMLGIGECFTFTVTMIIGDHIRGRLVVVQLIGACFSFLSTILMRAVTHSIVATNVITVMLGGSVGMANCVLYASSSEAMNIDGSISLPMSKMMSAFGALLSPFFSGLIIDGYGFEGLFVSLILLTFLRIVCLSTINFILYQKRKLTKEMESYNEMEANETTSLNEFNPNPNVSHSNI 454
[Close]
BLAST of SMED30013817 vs. Planmine SMEST
Match: SMESG000013063.1 (SMESG000013063.1)

HSP 1 Score: 654.44 bits (1687), Expect = 0.000e+0
Identity = 344/382 (90.05%), Postives = 344/382 (90.05%), Query Frame = -2 
Query:    9 MPFLTSGIAYWNSAYQLAMFIAGIFIFCSSMLTSIVTSAWMLFLTHTLLHGIGSGIVLASCTLVVADYFNKKHPYHVLATSLASSGAYGVLILTPLFAHLIQAYGWRTAFQXXXXXXXXXXXXXXXFYVPEENQYTEIGEKSQIDQTKWKFTTWNHVMENKQTLFWFVDRALNGAIFFALLMNLTEYRRQSGIVDMEIESGSTINIMLGIGECFTFTVTMIIGDHIRGRLVVVQLIGACFSFLSTILMRAVTHSIVATNVITVMLGGSVGMANCVLYASSSEAMNIDGSISLPMSKMMSAFGALLSPFFSGLIIDGYGFEGLFVSLILLTFLRIVCLSTINFILYQKRKLTKEMESYNEMEANETTSLNEFNPNPNVSHSNI 1154
            MPFLTSGIAYWNSAYQLAMFIAGIFIFCSSMLTSIVTSAWMLFLTHTLLHGIGSGIVLASCTLVVADYFNKKHPYHVLATSLASSGAYGVLILTPLFAHLIQAYGWRTAFQIIGILFVIVIGLAVIFYVPEEN YTEIGEKSQIDQTKWKFTTWNHVMENKQTLFWFVDRALNGAIFFALLMNLTEYRRQSGIVDMEIESGSTINIMLGIGECFTFTVTMIIGDHIRGR                                     GSVGMANCVLYASSSEAMNIDGSISLPMSKMMSAFGALLSPFFSGLIIDGYGFEGLFVSLILLTFLRIVCLSTINFILYQKRKLTKEMESYNEMEANETTSLNEFNPNPNVSHSNI
Sbjct:    1 MPFLTSGIAYWNSAYQLAMFIAGIFIFCSSMLTSIVTSAWMLFLTHTLLHGIGSGIVLASCTLVVADYFNKKHPYHVLATSLASSGAYGVLILTPLFAHLIQAYGWRTAFQIIGILFVIVIGLAVIFYVPEENPYTEIGEKSQIDQTKWKFTTWNHVMENKQTLFWFVDRALNGAIFFALLMNLTEYRRQSGIVDMEIESGSTINIMLGIGECFTFTVTMIIGDHIRGR-------------------------------------GSVGMANCVLYASSSEAMNIDGSISLPMSKMMSAFGALLSPFFSGLIIDGYGFEGLFVSLILLTFLRIVCLSTINFILYQKRKLTKEMESYNEMEANETTSLNEFNPNPNVSHSNI 345
[Close]
BLAST of SMED30013817 vs. Planmine SMEST
Match: SMESG000011418.1 (SMESG000011418.1)

HSP 1 Score: 373.629 bits (958), Expect = 2.022e-126
Identity = 196/403 (48.64%), Postives = 271/403 (67.25%), Query Frame = -2 
Query:  120 KVFSICVLLVITLNMIFIGGKRRNFGLFVSAFYRSFNGTSLFELNMVGDSYSSLAFILMPFLTSGIAYWNSAYQLAMFIAGIFIFCSSMLTSIVTSAWMLFLTHTLLHGIGSGIVLASCTLVVADYFNKKHPYHVLATSLASSGAYGVLILTPLFAHLIQAYGWRTAFQXXXXXXXXXXXXXXXFYVPEENQYTEIGEKSQIDQTKWKFTTWNHVMENKQTLFWFVDRALNGAIFFALLMNLTEYRRQSGIVDMEIESGSTINIMLGIGECFTFTVTMIIGDHIRGRLVVVQLIGACFSFLSTILMRAVTHSIVATNVITVMLGGSVGMANCVLYASSSEAMNIDGSISLPMSKMMSAFGALLSPFFSGLIIDGYGFEGLFVSLILLTFLRIVCLSTINFILY 1328
            K  SI +L+V T+N+IFIGGKRR FG+F+SAF  +FNGTS+ ELN VGDSYS++AF LMPF+TS   + N +YQ  M  A I +FCS MLTS VT+A  LF+THT+LHGIGS  +L++  L++ +YF+K H YHVLATSL + G YG LI  PL+  ++Q Y WR  F++I ILF + I   ++ YVP+ +      +  +I+  +  F +  ++++NKQ   W +DR    +I + LLMNLT+  R        +E G+ IN+M+G+GE   FT++ +IGD IRG+L    LIGA F+ L  ILM+ V++   A    ++ LG   G+ NC+LYASS E   + GSISLP+S MM AFG +++P FSGL+ID YGF GLF SLI+L  +R++CL  IN ILY
Sbjct:   15 KQLSIFILVVATINIIFIGGKRRTFGIFISAFRSTFNGTSMVELNWVGDSYSAVAFFLMPFITS-FVHRNRSYQKGMLAASILVFCSCMLTSFVTNAAELFITHTVLHGIGSAFILSTSALIIGEYFDKNHRYHVLATSLTTGGPYGSLIFGPLYGFMVQHYDWRFTFRVIAILFFVEISAGILAYVPKPDYQ----KSEEIENYEGAFPSLKYLIQNKQIFLWGIDRICTSSILYGLLMNLTDLLRSMLNGTENLEGGAKINLMMGVGESIIFTISAVIGDKIRGKLPFFHLIGAAFTLLMLILMKTVSYYPYAIIAFSIFLGAGAGVGNCMLYASSEEITFLHGSISLPLSNMMMAFGMIIAPIFSGLLIDMYGFLGLFSSLIILACIRMLCLIGINIILY 412
[Close]
BLAST of SMED30013817 vs. Planmine SMEST
Match: SMESG000026516.1 (SMESG000026516.1)

HSP 1 Score: 193.741 bits (491), Expect = 1.928e-56
Identity = 126/425 (29.65%), Postives = 218/425 (51.29%), Query Frame = -2 
Query:   51 VLLVITLNMIFIGGKRRNFGLFVSAFYRSFNGTSLFELNMVGDSYSSLAFILMPFLTSGIAYWNSAYQLAMFIAGIFIFCSSMLTSIVTSAWMLFLTHTLLHGIGSGIVLASCTLVVADYFNKKHPYHVLATSLASSGAYGVLILTPLFAHLIQAYGWRTAFQXXXXXXXXXXXXXXXFYVPEENQYTEIGEKSQ-IDQTKWKFTTWNHVMENKQTLFWFVDRALNGAIFFALLMNLTEYRRQSGIVDMEIESGSTINIMLGIGECFTF----TVTMIIGDHIRGRLVVVQLIGACFSFLSTILMRAVTHSIVATNVITVMLGGSVGMANCVLYASSSEAMNIDGSISLPMSKMMSAFGALLSPFFSGLIIDGYGFEGLFVSLILLTFLRIVCLSTINFILYQKRKLTKEMESYNEMEANETTSL 1310
            +L    +N+IF+GGKRR FG FV+ F++ +   SL ELN +GDSYS++ ++      S I Y+N  Y L  F+  +++  S + +S V +   LFLTHTL HGIGS +++++  LVV +YF+KKH YH+LAT+L S G+   ++   LF+ LI+ YGWR  F II  +   V+     F+  +     EI  K + + Q +W   +    ++    +FWF DR +   + + LL+NLT+Y  Q      ++   S + I+   GE  T+     +T I  D  + +L  + L+ +    +  I++   +H +    ++    G S+G +   L+ +  E   + G ++ P+S     FG ++SP  +  II+   +   F         +  CL  +N I+       +++E   ++  +E + L
Sbjct:   21 ILAFAAINVIFLGGKRRAFGSFVAQFHKEYPNISLTELNWIGDSYSAIGYMSTSLSISIIIYFNRRYGLFQFLGALWVLISCITSSFVPNPHWLFLTHTLFHGIGSSLIISTAGLVVNEYFDKKHRYHILATTLVSGGSVASILFVTLFSKLIEHYGWRKTF-IILGIIYFVVCSLAAFFFKKNKDLKEISSKGKMLCQGQWNIKS----IQIPLIIFWFTDRIMTSVVTYGLLLNLTDYVYQG---HKDLMKSSILTIIFASGEAVTYLIGSVITAITKDFFKEKLRYILLVTSLSMSICLIILEYTSHIVSIRRLLCFFAGFSLGPSITFLFPAGEEFTRLPGHLAYPVSLGGMGFGMIISPLLTAKIIELLDYRWFFFVQGCFILFKSSCL-LVNIIILH--FFIQKIEEPPQLTDDEKSPL 434
[Close]
BLAST of SMED30013817 vs. Planmine SMEST
Match: SMESG000026519.1 (SMESG000026519.1)

HSP 1 Score: 191.045 bits (484), Expect = 2.981e-55
Identity = 134/437 (30.66%), Postives = 228/437 (52.17%), Query Frame = -2 
Query:   33 VLLVITLNMIFIGGKRRNFGLFVSAFYRSFNGTSLFELNMVGDSYSSLAFILMPFLTSGIA-----YWNSAYQLAMFIAGIFIFCSSMLTSIVTSAWMLFLTHTLLHGIGSGIVLASCTLVVADYFNKKHPYHVLATSLASSGAYGVLILTPLFAHLIQAYGWRTAFQXXXXXXXXXXXXXXXFYVPEENQYTEIGEKSQIDQTKWKFTTWNHVMENKQTLFWFVDRALNGAIFFALLMNLTEYRRQSGIVDMEIESGSTINIMLGIGECFTF----TVTMIIGDHIRGRLVVVQLIGACFSFLSTILMRAVTHSIVATNVITVMLGG-SVGMANCVLYASSSEAMNIDGSISLPMSKMMSAFGALLSPFFSGLIIDGYGFEGLFVSLILLTFLRIVCLSTINFIL-YQKRKLTKEMESYNEMEANETTSLNEFNPN 1310
            +L    LN+IF+GGKRR FG FV+   R +   +L ELN +GDSY+++ +     +TSGI+     ++   Y +  F+  I++  S + +S V +   LFLTHTL HGIGS +++++  LVV D+F+ KHPYH+LAT+L S G+   +I   LFA LIQ+YGWR AF I+G L+ IV   A +F+    NQ  +  +K+   + +        ++       WF+DR +   + + LL+NLT+Y  ++   +  +   +T+  +   GE  T+    T+T I  D  + +L  + L+G  F+    ++       I++   I   L G ++G +   L+ +  E   + G ++ P+S     FG L+SP  +  I + + ++  F     L  +++  +  I  IL +   K   + ESY++   +    + E NP 
Sbjct:   20 ILFFAALNVIFLGGKRRAFGSFVAEMRRDYPNITLTELNWIGDSYAAVGY-----MTSGISIAIILFFKRRYGMFQFMGAIWVLVSCVTSSFVPNPHWLFLTHTLFHGIGSSLIISTVGLVVNDHFDSKHPYHILATTLVSGGSVASIIFVTLFASLIQSYGWRYAFIILGCLYFIVNASAALFFRKSNNQVEDTNKKTVSCRCEGHI----KIIHIPLLCLWFIDRVMTSVVTYGLLLNLTDYMYRT---EKNLVRSTTLTTLFASGEAITYLIGATITAITRDFFKDKLRYI-LLGTSFAMSICLIALEYFKGIISVCYILCFLAGFTLGPSITFLFPAGEELTRLPGHMAYPISLAGMGFGMLVSPLLTAKIAEIFLYKWFFFVQGCLILIKVASILAIILILHFYDDKF--QPESYSKFNNSNEVPIEE-NPK 440
The following BLAST results are available for this feature:
BLAST of SMED30013817 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30013817 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30013817 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30013817 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30013817 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30013817 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30013817 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30013817 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0H3YK657.270e-12348.64Slc16a-3 OS=Schmidtea mediterranea OX=79327 GN=slc... [more]
A0A4S2MEA96.974e-10741.76MFS domain-containing protein OS=Opisthorchis feli... [more]
A0A419Q2S41.357e-10541.99Uncharacterized protein OS=Clonorchis sinensis OX=... [more]
H2KPP02.187e-10541.99Monocarboxylate transporter 9 OS=Clonorchis sinens... [more]
A0A1S8WM163.856e-10541.99Transporter, major facilitator family protein OS=O... [more]
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BLAST of SMED30013817 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30013817 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 1
Match NameE-valueIdentityDescription
si:ch211-234h8.72.525e-722.66si:ch211-234h8.7 [Source:ZFIN;Acc:ZDB-GENE-061009-... [more]
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BLAST of SMED30013817 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30013817 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 5
Match NameE-valueIdentityDescription
EDO383562.618e-827.98Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO466668.278e-834.41Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO468508.849e-825.00Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO407784.821e-735.11Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO462075.862e-725.41Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of SMED30013817 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30013817 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000021812.10.000e+099.78SMESG000021812.1[more]
SMESG000013063.10.000e+090.05SMESG000013063.1[more]
SMESG000011418.12.022e-12648.64SMESG000011418.1[more]
SMESG000026516.11.928e-5629.65SMESG000026516.1[more]
SMESG000026519.12.981e-5530.66SMESG000026519.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30013817 ID=SMED30013817|Name=SMED30013817|organism=Schmidtea mediterranea sexual|type=transcript|length=1392bp
GGACTTCATATATTCGAATGGGAAACATTAGGATTTGGATTGAATTCATT
TAGAGAAGTAGTTTCATTAGCCTCCATTTCATTATATGATTCCATTTCTT
TAGTCAATTTCCGTTTCTGATACAGTATAAAATTAATTGTAGATAAACAA
ACTATTCTTAAAAACGTTAACAGTATCAATGATACAAATAATCCTTCAAA
TCCATATCCGTCAATAATCAAACCTGAAAAGAATGGTGACAGTAAAGCTC
CAAAAGCACTCATCATTTTGCTCATGGGCAACGATATTGATCCATCAATA
TTCATAGCTTCAGATGATGATGCATATAGAACACAATTTGCCATCCCTAC
TGACCCCCCTAACATCACAGTTATAACATTTGTTGCAACTATGCTATGTG
TAACAGCACGCATTAATATCGTTGACAGAAAACTAAAACAAGCTCCAATT
AATTGAACGACTACCAACCTTCCGCGAATATGATCACCAATAATCATCGT
TACTGTAAAAGTAAAACACTCTCCTATTCCTAACATTATATTAATAGTCG
AACCGCTTTCTATTTCCATGTCTACAATTCCAGATTGTCGTCTGTACTCT
GTCAAGTTCATTAAAAGAGCAAAAAATATTGCCCCATTCAAAGCACGATC
TACAAACCAAAACAGAGTCTGCTTATTCTCCATTACATGATTCCACGTAG
TGAATTTCCATTTCGTTTGATCAATTTGACTCTTTTCTCCGATTTCTGTA
TACTGATTCTCCTCCGGCACATAAAATATCACCGCCAATCCAATAACTAT
CACAAACAGAATCCCGATTATTTGAAAAGCAGTTCTCCATCCATAAGCTT
GAATCAAATGGGCAAACAACGGAGTCAATATTAGAACTCCATACGCACCA
GATGAAGCTAAACTAGTCGCCAAAACATGGTACGGATGTTTTTTGTTGAA
ATAATCTGCCACAACTAGGGTACATGAAGCTAACACTATACCGGAACCTA
TTCCATGCAATAAGGTATGAGTCAAAAACAACATCCACGCACTAGTAACG
ATAGATGTCAACATTGAACTGCAAAAAATAAAAATCCCGGCAATAAACAT
GGCCAACTGATAGGCACTGTTCCAATACGCTATGCCAGATGTCAAAAACG
GCATTAATATGAACGCCAGTGAGGAATAACTGTCCCCGACCATATTTAAT
TCAAACAAACTTGTTCCATTGAAAGACCGATAGAATGCTGAAACAAATAA
ACCGAAATTTCTCCTTTTTCCACCGATAAAGATCATGTTCAATGTGATAA
CCAACAGAACACAGATCGAAAAAACTTTTTCTGGCATGAGACTTTTCATG
CATCCTTTGTCAAATCCCATTGTAGGTTAAAATGGGATAATT
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protein sequence of SMED30013817-orf-1

>SMED30013817-orf-1 ID=SMED30013817-orf-1|Name=SMED30013817-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=455bp
MGFDKGCMKSLMPEKVFSICVLLVITLNMIFIGGKRRNFGLFVSAFYRSF
NGTSLFELNMVGDSYSSLAFILMPFLTSGIAYWNSAYQLAMFIAGIFIFC
SSMLTSIVTSAWMLFLTHTLLHGIGSGIVLASCTLVVADYFNKKHPYHVL
ATSLASSGAYGVLILTPLFAHLIQAYGWRTAFQIIGILFVIVIGLAVIFY
VPEENQYTEIGEKSQIDQTKWKFTTWNHVMENKQTLFWFVDRALNGAIFF
ALLMNLTEYRRQSGIVDMEIESGSTINIMLGIGECFTFTVTMIIGDHIRG
RLVVVQLIGACFSFLSTILMRAVTHSIVATNVITVMLGGSVGMANCVLYA
SSSEAMNIDGSISLPMSKMMSAFGALLSPFFSGLIIDGYGFEGLFVSLIL
LTFLRIVCLSTINFILYQKRKLTKEMESYNEMEANETTSLNEFNPNPNVS
HSNI*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000099neuron
PLANA:0000418head
Vocabulary: INTERPRO
TermDefinition
IPR036259MFS_trans_sf
IPR011701MFS
IPR020846MFS_dom
Vocabulary: molecular function
TermDefinition
GO:0022857transmembrane transporter activity
Vocabulary: biological process
TermDefinition
GO:0055085transmembrane transport
Vocabulary: cellular component
TermDefinition
GO:0016021integral component of membrane
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:1.20.1250.20coord: 222..421
e-value: 8.2E-11
score: 43.5
NoneNo IPR availableGENE3DG3DSA:1.20.1250.20coord: 8..212
e-value: 4.1E-12
score: 47.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 435..454
NoneNo IPR availablePANTHERPTHR11360MONOCARBOXYLATE TRANSPORTERcoord: 21..435
NoneNo IPR availablePANTHERPTHR11360:SF251coord: 21..435
NoneNo IPR availableCDDcd17352MFS_MCT_SLC16coord: 21..199
e-value: 1.17457E-11
score: 63.7256
NoneNo IPR availableTMHMMTMhelixcoord: 395..417
NoneNo IPR availableTMHMMTMhelixcoord: 16..33
NoneNo IPR availableTMHMMTMhelixcoord: 327..349
NoneNo IPR availableTMHMMTMhelixcoord: 235..257
NoneNo IPR availableTMHMMTMhelixcoord: 64..86
NoneNo IPR availableTMHMMTMhelixcoord: 119..141
NoneNo IPR availableTMHMMTMhelixcoord: 272..294
NoneNo IPR availableTMHMMTMhelixcoord: 369..391
NoneNo IPR availableTMHMMTMhelixcoord: 180..202
NoneNo IPR availableTMHMMTMhelixcoord: 148..170
NoneNo IPR availableTMHMMTMhelixcoord: 301..323
NoneNo IPR availableTMHMMTMhelixcoord: 93..115
IPR011701Major facilitator superfamilyPFAMPF07690MFS_1coord: 39..356
e-value: 6.3E-18
score: 64.8
IPR020846Major facilitator superfamily domainPROSITEPS50850MFScoord: 21..420
score: 14.865
IPR036259MFS transporter superfamilySUPERFAMILYSSF103473MFS general substrate transportercoord: 18..413