Cleavage and polyadenylation specificity factor subunit 6
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30013733 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 6
Homology
BLAST of Cleavage and polyadenylation specificity factor subunit 6 vs. Ensembl Human
Match: CPSF6 (cleavage and polyadenylation specific factor 6 [Source:HGNC Symbol;Acc:HGNC:13871]) HSP 1 Score: 137.117 bits (344), Expect = 5.097e-34 Identity = 76/168 (45.24%), Postives = 102/168 (60.71%), Query Frame = 1 Query: 100 MADE-SEIDLYDNMEDNWKRES-------LDLYDDVESHS--NSDNQRDV---------------KSCSQN---NYTGRRVATYVGNLRWWTTDQDLLDAVNKLDIKDVLEIKFHENRQNGQSKGFCVMVFGSDKSAKEAMEKLPKIEIHSLNPIVTYCNKQNLNYFE 519 MAD ID+Y ++ + + +E+ +DLYDDV S S N D D K + N YTG+R+A Y+GNL WWTTD+DL +AV+ L + D+LEIKF ENR NGQSKGF ++ GS+ S+K+ M+ LPK E+H NP+VT CNKQ L+ FE Sbjct: 1 MADGVDHIDIYADVGEEFNQEAEYGGHDQIDLYDDVISPSANNGDAPEDRDYMDTLPPTVGDDVGKGAAPNVVYTYTGKRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPCNKQFLSQFE 168 HSP 2 Score: 119.013 bits (297), Expect = 5.684e-28 Identity = 57/73 (78.08%), Postives = 66/73 (90.41%), Query Frame = 1 Query: 1114 EFEDILQRNKTVSSSAINRAVQDASAGDYASAIETLVTAISLIKQSKIASDSRCKVLINSLQDTLTGIESKSY 1332 EFE+I+ RN+ +SSSAI+RAV DASAGDY SAIETLVTAISLIKQSK+++D RCKVLI+SLQD L GIESKSY Sbjct: 340 EFEEIMNRNRAISSSAISRAVSDASAGDYGSAIETLVTAISLIKQSKVSADDRCKVLISSLQDCLHGIESKSY 412
BLAST of Cleavage and polyadenylation specificity factor subunit 6 vs. Ensembl Human
Match: CPSF6 (cleavage and polyadenylation specific factor 6 [Source:HGNC Symbol;Acc:HGNC:13871]) HSP 1 Score: 137.887 bits (346), Expect = 6.197e-34 Identity = 76/168 (45.24%), Postives = 103/168 (61.31%), Query Frame = 1 Query: 100 MADESE-IDLYDNMEDNWKRES-------LDLYDDVESHS--NSDNQRDV---------------KSCSQN---NYTGRRVATYVGNLRWWTTDQDLLDAVNKLDIKDVLEIKFHENRQNGQSKGFCVMVFGSDKSAKEAMEKLPKIEIHSLNPIVTYCNKQNLNYFE 519 MAD + ID+Y ++ + + +E+ +DLYDDV S S N D D K + N YTG+R+A Y+GNL WWTTD+DL +AV+ L + D+LEIKF ENR NGQSKGF ++ GS+ S+K+ M+ LPK E+H NP+VT CNKQ L+ FE Sbjct: 1 MADGVDHIDIYADVGEEFNQEAEYGGHDQIDLYDDVISPSANNGDAPEDRDYMDTLPPTVGDDVGKGAAPNVVYTYTGKRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPCNKQFLSQFE 168 HSP 2 Score: 119.398 bits (298), Expect = 8.774e-28 Identity = 57/73 (78.08%), Postives = 66/73 (90.41%), Query Frame = 1 Query: 1114 EFEDILQRNKTVSSSAINRAVQDASAGDYASAIETLVTAISLIKQSKIASDSRCKVLINSLQDTLTGIESKSY 1332 EFE+I+ RN+ +SSSAI+RAV DASAGDY SAIETLVTAISLIKQSK+++D RCKVLI+SLQD L GIESKSY Sbjct: 413 EFEEIMNRNRAISSSAISRAVSDASAGDYGSAIETLVTAISLIKQSKVSADDRCKVLISSLQDCLHGIESKSY 485
BLAST of Cleavage and polyadenylation specificity factor subunit 6 vs. Ensembl Human
Match: CPSF6 (cleavage and polyadenylation specific factor 6 [Source:HGNC Symbol;Acc:HGNC:13871]) HSP 1 Score: 137.502 bits (345), Expect = 1.100e-33 Identity = 76/168 (45.24%), Postives = 103/168 (61.31%), Query Frame = 1 Query: 100 MADESE-IDLYDNMEDNWKRES-------LDLYDDVESHS--NSDNQRDV---------------KSCSQN---NYTGRRVATYVGNLRWWTTDQDLLDAVNKLDIKDVLEIKFHENRQNGQSKGFCVMVFGSDKSAKEAMEKLPKIEIHSLNPIVTYCNKQNLNYFE 519 MAD + ID+Y ++ + + +E+ +DLYDDV S S N D D K + N YTG+R+A Y+GNL WWTTD+DL +AV+ L + D+LEIKF ENR NGQSKGF ++ GS+ S+K+ M+ LPK E+H NP+VT CNKQ L+ FE Sbjct: 1 MADGVDHIDIYADVGEEFNQEAEYGGHDQIDLYDDVISPSANNGDAPEDRDYMDTLPPTVGDDVGKGAAPNVVYTYTGKRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPCNKQFLSQFE 168 HSP 2 Score: 119.398 bits (298), Expect = 1.220e-27 Identity = 57/73 (78.08%), Postives = 66/73 (90.41%), Query Frame = 1 Query: 1114 EFEDILQRNKTVSSSAINRAVQDASAGDYASAIETLVTAISLIKQSKIASDSRCKVLINSLQDTLTGIESKSY 1332 EFE+I+ RN+ +SSSAI+RAV DASAGDY SAIETLVTAISLIKQSK+++D RCKVLI+SLQD L GIESKSY Sbjct: 450 EFEEIMNRNRAISSSAISRAVSDASAGDYGSAIETLVTAISLIKQSKVSADDRCKVLISSLQDCLHGIESKSY 522
BLAST of Cleavage and polyadenylation specificity factor subunit 6 vs. Ensembl Human
Match: CPSF7 (cleavage and polyadenylation specific factor 7 [Source:HGNC Symbol;Acc:HGNC:30098]) HSP 1 Score: 107.842 bits (268), Expect = 9.482e-25 Identity = 49/73 (67.12%), Postives = 66/73 (90.41%), Query Frame = 1 Query: 1114 EFEDILQRNKTVSSSAINRAVQDASAGDYASAIETLVTAISLIKQSKIASDSRCKVLINSLQDTLTGIESKSY 1332 EFEDI++RN+ +SSSAI++AV ASAGDY+ AIETL+TAI++IKQS++A+D RC+VLI+SL+D L GIE+KSY Sbjct: 260 EFEDIMKRNRAISSSAISKAVSGASAGDYSDAIETLLTAIAVIKQSRVANDERCRVLISSLKDCLHGIEAKSY 332 HSP 2 Score: 91.2781 bits (225), Expect = 3.802e-19 Identity = 59/162 (36.42%), Postives = 84/162 (51.85%), Query Frame = 1 Query: 118 IDLYDNMEDNWKRE-----SLDLYDDVESHSN--SDNQ----------RDVKSCSQNN--------YTG---RRVATYVGNLRWWTTDQDLLDAVNKLDIKDVLEIKFHENRQNGQSKGFCVMVFGSDKSAKEAMEKLPKIEIHSLNPIVTYCNKQNLNYFE 519 ID+Y + E N E +DLYDDV + ++ SD++ R S NN Y+G RR A YVG+ WWTTDQ L+ + + + DV+E+KF ENR NGQSKG+ +V S+ S + +E LP ++ V +QNL+ FE Sbjct: 8 IDIYADEEFNQDPEFNNTDQIDLYDDVLTATSQPSDDRSSSTEPPPPVRQEPSPKPNNKTPAILYTYSGLRNRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPATRQNLSQFE 169
BLAST of Cleavage and polyadenylation specificity factor subunit 6 vs. Ensembl Human
Match: CPSF7 (cleavage and polyadenylation specific factor 7 [Source:HGNC Symbol;Acc:HGNC:30098]) HSP 1 Score: 108.997 bits (271), Expect = 1.360e-24 Identity = 49/73 (67.12%), Postives = 66/73 (90.41%), Query Frame = 1 Query: 1114 EFEDILQRNKTVSSSAINRAVQDASAGDYASAIETLVTAISLIKQSKIASDSRCKVLINSLQDTLTGIESKSY 1332 EFEDI++RN+ +SSSAI++AV ASAGDY+ AIETL+TAI++IKQS++A+D RC+VLI+SL+D L GIE+KSY Sbjct: 327 EFEDIMKRNRAISSSAISKAVSGASAGDYSDAIETLLTAIAVIKQSRVANDERCRVLISSLKDCLHGIEAKSY 399 HSP 2 Score: 92.0485 bits (227), Expect = 4.418e-19 Identity = 59/162 (36.42%), Postives = 84/162 (51.85%), Query Frame = 1 Query: 118 IDLYDNMEDNWKRE-----SLDLYDDVESHSN--SDNQ----------RDVKSCSQNN--------YTG---RRVATYVGNLRWWTTDQDLLDAVNKLDIKDVLEIKFHENRQNGQSKGFCVMVFGSDKSAKEAMEKLPKIEIHSLNPIVTYCNKQNLNYFE 519 ID+Y + E N E +DLYDDV + ++ SD++ R S NN Y+G RR A YVG+ WWTTDQ L+ + + + DV+E+KF ENR NGQSKG+ +V S+ S + +E LP ++ V +QNL+ FE Sbjct: 8 IDIYADEEFNQDPEFNNTDQIDLYDDVLTATSQPSDDRSSSTEPPPPVRQEPSPKPNNKTPAILYTYSGLRNRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPATRQNLSQFE 169
BLAST of Cleavage and polyadenylation specificity factor subunit 6 vs. Ensembl Celegans
Match: cfim-2 (Cleavage Factor IM (CFIm) homolog [Source:UniProtKB/TrEMBL;Acc:C1P629]) HSP 1 Score: 95.9005 bits (237), Expect = 1.120e-21 Identity = 43/73 (58.90%), Postives = 54/73 (73.97%), Query Frame = 1 Query: 1114 EFEDILQRNKTVSSSAINRAVQDASAGDYASAIETLVTAISLIKQSKIASDSRCKVLINSLQDTLTGIESKSY 1332 EFED++ RN+TVSSSAI RA+ DAS GD A ET++TAI LIK S+I D RC+ L+ L+ TL G+ESK Y Sbjct: 179 EFEDVMTRNQTVSSSAIARAITDASVGDIKGASETILTAIQLIKNSRIGHDERCRQLVYGLEHTLKGLESKGY 251
BLAST of Cleavage and polyadenylation specificity factor subunit 6 vs. Ensembl Celegans
Match: cfim-2 (Cleavage Factor IM (CFIm) homolog [Source:UniProtKB/TrEMBL;Acc:C1P629]) HSP 1 Score: 95.9005 bits (237), Expect = 1.120e-21 Identity = 43/73 (58.90%), Postives = 54/73 (73.97%), Query Frame = 1 Query: 1114 EFEDILQRNKTVSSSAINRAVQDASAGDYASAIETLVTAISLIKQSKIASDSRCKVLINSLQDTLTGIESKSY 1332 EFED++ RN+TVSSSAI RA+ DAS GD A ET++TAI LIK S+I D RC+ L+ L+ TL G+ESK Y Sbjct: 179 EFEDVMTRNQTVSSSAIARAITDASVGDIKGASETILTAIQLIKNSRIGHDERCRQLVYGLEHTLKGLESKGY 251
BLAST of Cleavage and polyadenylation specificity factor subunit 6 vs. Ensembl Celegans
Match: cfim-2 (Cleavage Factor IM (CFIm) homolog [Source:UniProtKB/TrEMBL;Acc:C1P629]) HSP 1 Score: 95.9005 bits (237), Expect = 1.120e-21 Identity = 43/73 (58.90%), Postives = 54/73 (73.97%), Query Frame = 1 Query: 1114 EFEDILQRNKTVSSSAINRAVQDASAGDYASAIETLVTAISLIKQSKIASDSRCKVLINSLQDTLTGIESKSY 1332 EFED++ RN+TVSSSAI RA+ DAS GD A ET++TAI LIK S+I D RC+ L+ L+ TL G+ESK Y Sbjct: 179 EFEDVMTRNQTVSSSAIARAITDASVGDIKGASETILTAIQLIKNSRIGHDERCRQLVYGLEHTLKGLESKGY 251
BLAST of Cleavage and polyadenylation specificity factor subunit 6 vs. Ensembl Celegans
Match: cfim-2 (Cleavage Factor IM (CFIm) homolog [Source:UniProtKB/TrEMBL;Acc:C1P629]) HSP 1 Score: 95.9005 bits (237), Expect = 1.120e-21 Identity = 43/73 (58.90%), Postives = 54/73 (73.97%), Query Frame = 1 Query: 1114 EFEDILQRNKTVSSSAINRAVQDASAGDYASAIETLVTAISLIKQSKIASDSRCKVLINSLQDTLTGIESKSY 1332 EFED++ RN+TVSSSAI RA+ DAS GD A ET++TAI LIK S+I D RC+ L+ L+ TL G+ESK Y Sbjct: 179 EFEDVMTRNQTVSSSAIARAITDASVGDIKGASETILTAIQLIKNSRIGHDERCRQLVYGLEHTLKGLESKGY 251
BLAST of Cleavage and polyadenylation specificity factor subunit 6 vs. Ensembl Celegans
Match: cfim-2 (Cleavage Factor IM (CFIm) homolog [Source:UniProtKB/TrEMBL;Acc:C1P629]) HSP 1 Score: 95.9005 bits (237), Expect = 1.120e-21 Identity = 43/73 (58.90%), Postives = 54/73 (73.97%), Query Frame = 1 Query: 1114 EFEDILQRNKTVSSSAINRAVQDASAGDYASAIETLVTAISLIKQSKIASDSRCKVLINSLQDTLTGIESKSY 1332 EFED++ RN+TVSSSAI RA+ DAS GD A ET++TAI LIK S+I D RC+ L+ L+ TL G+ESK Y Sbjct: 179 EFEDVMTRNQTVSSSAIARAITDASVGDIKGASETILTAIQLIKNSRIGHDERCRQLVYGLEHTLKGLESKGY 251
BLAST of Cleavage and polyadenylation specificity factor subunit 6 vs. Ensembl Fly
Match: Cpsf6 (gene:FBgn0035872 transcript:FBtr0076710) HSP 1 Score: 122.094 bits (305), Expect = 9.002e-29 Identity = 56/73 (76.71%), Postives = 67/73 (91.78%), Query Frame = 1 Query: 1114 EFEDILQRNKTVSSSAINRAVQDASAGDYASAIETLVTAISLIKQSKIASDSRCKVLINSLQDTLTGIESKSY 1332 EFE+++ RN+TVSSSAI RAV DA+AG+Y+SAIETLVTAISLIKQSK+A D RCK+LI+SLQDTL GIE+KSY Sbjct: 447 EFEEVMSRNRTVSSSAIARAVSDAAAGEYSSAIETLVTAISLIKQSKVAHDERCKILISSLQDTLHGIEAKSY 519 HSP 2 Score: 110.923 bits (276), Expect = 3.858e-25 Identity = 59/171 (34.50%), Postives = 85/171 (49.71%), Query Frame = 1 Query: 103 ADESEIDLYDNMEDNWKRESLDLYDDV-----------------------------ESHSNSDNQRDVKSCSQNNYTG---RRVATYVGNLRWWTTDQDLLDAVNKLDIKDVLEIKFHENRQNGQSKGFCVMVFGSDKSAKEAMEKLPKIEIHSLNPIVTYCNKQNLNYFE 519 A++ + D +D + + +DLYDD+ NS V S + T RR YVGNL WWTTDQD+ +++ + + D+ E+KF ENR NGQSKGF V+ GS+ S + +++LPK E+H P+VTY +KQ L FE Sbjct: 10 AEDLDKDFAGQAQDEFGGDGVDLYDDIGGPTESAASGGGGGGTPSADGAAGPGSGEPGERNSGGPNGVYHQSSGSLTPTMNRRYQLYVGNLTWWTTDQDIANSLRDIGVSDLQEVKFFENRANGQSKGFSVISLGSESSLRAVLDQLPKKEMHGQAPVVTYPSKQALTQFE 180
BLAST of Cleavage and polyadenylation specificity factor subunit 6 vs. Ensembl Fly
Match: Cpsf6 (gene:FBgn0035872 transcript:FBtr0304628) HSP 1 Score: 121.709 bits (304), Expect = 1.174e-28 Identity = 56/73 (76.71%), Postives = 67/73 (91.78%), Query Frame = 1 Query: 1114 EFEDILQRNKTVSSSAINRAVQDASAGDYASAIETLVTAISLIKQSKIASDSRCKVLINSLQDTLTGIESKSY 1332 EFE+++ RN+TVSSSAI RAV DA+AG+Y+SAIETLVTAISLIKQSK+A D RCK+LI+SLQDTL GIE+KSY Sbjct: 400 EFEEVMSRNRTVSSSAIARAVSDAAAGEYSSAIETLVTAISLIKQSKVAHDERCKILISSLQDTLHGIEAKSY 472 HSP 2 Score: 110.923 bits (276), Expect = 3.721e-25 Identity = 59/171 (34.50%), Postives = 85/171 (49.71%), Query Frame = 1 Query: 103 ADESEIDLYDNMEDNWKRESLDLYDDV-----------------------------ESHSNSDNQRDVKSCSQNNYTG---RRVATYVGNLRWWTTDQDLLDAVNKLDIKDVLEIKFHENRQNGQSKGFCVMVFGSDKSAKEAMEKLPKIEIHSLNPIVTYCNKQNLNYFE 519 A++ + D +D + + +DLYDD+ NS V S + T RR YVGNL WWTTDQD+ +++ + + D+ E+KF ENR NGQSKGF V+ GS+ S + +++LPK E+H P+VTY +KQ L FE Sbjct: 10 AEDLDKDFAGQAQDEFGGDGVDLYDDIGGPTESAASGGGGGGTPSADGAAGPGSGEPGERNSGGPNGVYHQSSGSLTPTMNRRYQLYVGNLTWWTTDQDIANSLRDIGVSDLQEVKFFENRANGQSKGFSVISLGSESSLRAVLDQLPKKEMHGQAPVVTYPSKQALTQFE 180
BLAST of Cleavage and polyadenylation specificity factor subunit 6 vs. Ensembl Zebrafish
Match: cpsf6 (cleavage and polyadenylation specific factor 6 [Source:NCBI gene;Acc:327069]) HSP 1 Score: 137.887 bits (346), Expect = 3.250e-34 Identity = 78/168 (46.43%), Postives = 100/168 (59.52%), Query Frame = 1 Query: 100 MADE-SEIDLYDNMEDNWKRES-------LDLYDDVESHS--NSDNQRD---------------VKSCSQN---NYTGRRVATYVGNLRWWTTDQDLLDAVNKLDIKDVLEIKFHENRQNGQSKGFCVMVFGSDKSAKEAMEKLPKIEIHSLNPIVTYCNKQNLNYFE 519 MAD ID+Y ++E+ + +ES +DLYDDV S S N D D K N Y G+R+A Y+GNL WWTTD+DL DA+ + I DVLEIKF ENR NGQSKGF ++ GSD S+++ M+ L K E+H NPIVT CNKQ+L+ FE Sbjct: 1 MADGVDHIDIYADVEEEFNQESDYPVHDQIDLYDDVISPSANNGDAPEDRDYLDSLPAPGGNEGSKGAPANVVYTYNGKRIALYIGNLTWWTTDEDLTDAIRSIGINDVLEIKFFENRANGQSKGFALVCVGSDSSSRKLMDLLSKRELHGQNPIVTPCNKQSLSQFE 168 HSP 2 Score: 120.553 bits (301), Expect = 2.619e-28 Identity = 58/75 (77.33%), Postives = 67/75 (89.33%), Query Frame = 1 Query: 1114 EFEDILQRNKTVSSSAINRAVQDASAGDYASAIETLVTAISLIKQSKIASDSRCKVLINSLQDTLTGIESKSYGS 1338 EFE+I+ RN+ +SSSAI+RAV DASA DY SAIETLVTAISLIKQSK+++D RCKVLI+SLQD L GIESKSYGS Sbjct: 406 EFEEIMNRNRAISSSAISRAVSDASAADYGSAIETLVTAISLIKQSKVSADDRCKVLISSLQDCLHGIESKSYGS 480
BLAST of Cleavage and polyadenylation specificity factor subunit 6 vs. Ensembl Zebrafish
Match: cpsf6 (cleavage and polyadenylation specific factor 6 [Source:NCBI gene;Acc:327069]) HSP 1 Score: 137.502 bits (345), Expect = 5.549e-34 Identity = 78/168 (46.43%), Postives = 100/168 (59.52%), Query Frame = 1 Query: 100 MADE-SEIDLYDNMEDNWKRES-------LDLYDDVESHS--NSDNQRD---------------VKSCSQN---NYTGRRVATYVGNLRWWTTDQDLLDAVNKLDIKDVLEIKFHENRQNGQSKGFCVMVFGSDKSAKEAMEKLPKIEIHSLNPIVTYCNKQNLNYFE 519 MAD ID+Y ++E+ + +ES +DLYDDV S S N D D K N Y G+R+A Y+GNL WWTTD+DL DA+ + I DVLEIKF ENR NGQSKGF ++ GSD S+++ M+ L K E+H NPIVT CNKQ+L+ FE Sbjct: 1 MADGVDHIDIYADVEEEFNQESDYPVHDQIDLYDDVISPSANNGDAPEDRDYLDSLPAPGGNEGSKGAPANVVYTYNGKRIALYIGNLTWWTTDEDLTDAIRSIGINDVLEIKFFENRANGQSKGFALVCVGSDSSSRKLMDLLSKRELHGQNPIVTPCNKQSLSQFE 168 HSP 2 Score: 120.553 bits (301), Expect = 2.794e-28 Identity = 58/75 (77.33%), Postives = 67/75 (89.33%), Query Frame = 1 Query: 1114 EFEDILQRNKTVSSSAINRAVQDASAGDYASAIETLVTAISLIKQSKIASDSRCKVLINSLQDTLTGIESKSYGS 1338 EFE+I+ RN+ +SSSAI+RAV DASA DY SAIETLVTAISLIKQSK+++D RCKVLI+SLQD L GIESKSYGS Sbjct: 419 EFEEIMNRNRAISSSAISRAVSDASAADYGSAIETLVTAISLIKQSKVSADDRCKVLISSLQDCLHGIESKSYGS 493
BLAST of Cleavage and polyadenylation specificity factor subunit 6 vs. Ensembl Zebrafish
Match: cpsf6 (cleavage and polyadenylation specific factor 6 [Source:NCBI gene;Acc:327069]) HSP 1 Score: 137.502 bits (345), Expect = 6.267e-34 Identity = 78/168 (46.43%), Postives = 100/168 (59.52%), Query Frame = 1 Query: 100 MADE-SEIDLYDNMEDNWKRES-------LDLYDDVESHS--NSDNQRD---------------VKSCSQN---NYTGRRVATYVGNLRWWTTDQDLLDAVNKLDIKDVLEIKFHENRQNGQSKGFCVMVFGSDKSAKEAMEKLPKIEIHSLNPIVTYCNKQNLNYFE 519 MAD ID+Y ++E+ + +ES +DLYDDV S S N D D K N Y G+R+A Y+GNL WWTTD+DL DA+ + I DVLEIKF ENR NGQSKGF ++ GSD S+++ M+ L K E+H NPIVT CNKQ+L+ FE Sbjct: 1 MADGVDHIDIYADVEEEFNQESDYPVHDQIDLYDDVISPSANNGDAPEDRDYLDSLPAPGGNEGSKGAPANVVYTYNGKRIALYIGNLTWWTTDEDLTDAIRSIGINDVLEIKFFENRANGQSKGFALVCVGSDSSSRKLMDLLSKRELHGQNPIVTPCNKQSLSQFE 168 HSP 2 Score: 120.553 bits (301), Expect = 2.630e-28 Identity = 58/75 (77.33%), Postives = 67/75 (89.33%), Query Frame = 1 Query: 1114 EFEDILQRNKTVSSSAINRAVQDASAGDYASAIETLVTAISLIKQSKIASDSRCKVLINSLQDTLTGIESKSYGS 1338 EFE+I+ RN+ +SSSAI+RAV DASA DY SAIETLVTAISLIKQSK+++D RCKVLI+SLQD L GIESKSYGS Sbjct: 419 EFEEIMNRNRAISSSAISRAVSDASAADYGSAIETLVTAISLIKQSKVSADDRCKVLISSLQDCLHGIESKSYGS 493
BLAST of Cleavage and polyadenylation specificity factor subunit 6 vs. Ensembl Zebrafish
Match: cpsf6 (cleavage and polyadenylation specific factor 6 [Source:NCBI gene;Acc:327069]) HSP 1 Score: 82.0333 bits (201), Expect = 2.947e-18 Identity = 40/49 (81.63%), Postives = 44/49 (89.80%), Query Frame = 1 Query: 1192 GDYASAIETLVTAISLIKQSKIASDSRCKVLINSLQDTLTGIESKSYGS 1338 DY SAIETLVTAISLIKQSK+++D RCKVLI+SLQD L GIESKSYGS Sbjct: 1 ADYGSAIETLVTAISLIKQSKVSADDRCKVLISSLQDCLHGIESKSYGS 49
BLAST of Cleavage and polyadenylation specificity factor subunit 6 vs. Ensembl Zebrafish
Match: cpsf6 (cleavage and polyadenylation specific factor 6 [Source:NCBI gene;Acc:327069]) HSP 1 Score: 67.0106 bits (162), Expect = 5.141e-13 Identity = 32/39 (82.05%), Postives = 36/39 (92.31%), Query Frame = 1 Query: 1222 VTAISLIKQSKIASDSRCKVLINSLQDTLTGIESKSYGS 1338 VTAISLIKQSK+++D RCKVLI+SLQD L GIESKSYGS Sbjct: 1 VTAISLIKQSKVSADDRCKVLISSLQDCLHGIESKSYGS 39
BLAST of Cleavage and polyadenylation specificity factor subunit 6 vs. Ensembl Xenopus
Match: grm5 (glutamate receptor, metabotropic 5 [Source:Xenbase;Acc:XB-GENE-954112]) HSP 1 Score: 132.494 bits (332), Expect = 3.196e-32 Identity = 75/168 (44.64%), Postives = 100/168 (59.52%), Query Frame = 1 Query: 100 MADE-SEIDLYDNMEDNWKRES-------LDLYDDVESHS--NSDNQRD---------------VKSCSQN---NYTGRRVATYVGNLRWWTTDQDLLDAVNKLDIKDVLEIKFHENRQNGQSKGFCVMVFGSDKSAKEAMEKLPKIEIHSLNPIVTYCNKQNLNYFE 519 MAD ID+Y ++ + + +E+ ++LY+DV S S N D D VK N YTG+R+A Y+GNL WWTTD+DL DAV+ L + D+LEIKF ENR NGQSKGF ++ S+ S+K+ M+ LPK E+H PIVT CNKQ L+ FE Sbjct: 1 MADGVDHIDIYADVGEEFNQEAEYGAHEQIELYEDVISPSANNGDAPEDRDYMDNLATSVGDDVVKGSVPNIVYTYTGKRIALYIGNLTWWTTDEDLTDAVHSLGVNDILEIKFFENRANGQSKGFALICVSSESSSKKLMDLLPKREMHGQKPIVTPCNKQFLSQFE 168 HSP 2 Score: 119.398 bits (298), Expect = 7.256e-28 Identity = 57/73 (78.08%), Postives = 66/73 (90.41%), Query Frame = 1 Query: 1114 EFEDILQRNKTVSSSAINRAVQDASAGDYASAIETLVTAISLIKQSKIASDSRCKVLINSLQDTLTGIESKSY 1332 EFE+I+ RN+ +SSSAI+RAV DASAGDY SAIETLVTAISLIKQSK+++D RCKVLI+SLQD L GIESKSY Sbjct: 405 EFEEIMNRNRAISSSAISRAVSDASAGDYGSAIETLVTAISLIKQSKVSADDRCKVLISSLQDCLHGIESKSY 477
BLAST of Cleavage and polyadenylation specificity factor subunit 6 vs. Ensembl Xenopus
Match: grm5 (glutamate receptor, metabotropic 5 [Source:Xenbase;Acc:XB-GENE-954112]) HSP 1 Score: 132.494 bits (332), Expect = 3.439e-32 Identity = 75/168 (44.64%), Postives = 101/168 (60.12%), Query Frame = 1 Query: 100 MADESE-IDLYDNMEDNWKRES-------LDLYDDVESHS--NSDNQRD---------------VKSCSQN---NYTGRRVATYVGNLRWWTTDQDLLDAVNKLDIKDVLEIKFHENRQNGQSKGFCVMVFGSDKSAKEAMEKLPKIEIHSLNPIVTYCNKQNLNYFE 519 MAD + ID+Y ++ + + +E+ ++LY+DV S S N D D VK N YTG+R+A Y+GNL WWTTD+DL DAV+ L + D+LEIKF ENR NGQSKGF ++ S+ S+K+ M+ LPK E+H PIVT CNKQ L+ FE Sbjct: 1 MADGVDHIDIYADVGEEFNQEAEYGAHEQIELYEDVISPSANNGDAPEDRDYMDNLATSVGDDVVKGSVPNIVYTYTGKRIALYIGNLTWWTTDEDLTDAVHSLGVNDILEIKFFENRANGQSKGFALICVSSESSSKKLMDLLPKREMHGQKPIVTPCNKQFLSQFE 168 HSP 2 Score: 119.013 bits (297), Expect = 1.154e-27 Identity = 57/73 (78.08%), Postives = 66/73 (90.41%), Query Frame = 1 Query: 1114 EFEDILQRNKTVSSSAINRAVQDASAGDYASAIETLVTAISLIKQSKIASDSRCKVLINSLQDTLTGIESKSY 1332 EFE+I+ RN+ +SSSAI+RAV DASAGDY SAIETLVTAISLIKQSK+++D RCKVLI+SLQD L GIESKSY Sbjct: 418 EFEEIMNRNRAISSSAISRAVSDASAGDYGSAIETLVTAISLIKQSKVSADDRCKVLISSLQDCLHGIESKSY 490
BLAST of Cleavage and polyadenylation specificity factor subunit 6 vs. Ensembl Xenopus
Match: nkx6-1 (NK6 homeobox 1 [Source:Xenbase;Acc:XB-GENE-483574]) HSP 1 Score: 98.5969 bits (244), Expect = 4.516e-23 Identity = 67/169 (39.64%), Postives = 93/169 (55.03%), Query Frame = 1 Query: 100 MADESE-IDLYDN----MEDNWKRESLDLYDDV-----------ESHSNS---DNQRDVKSCS--QNN-------YTGR-RVATYVGNLRWWTTDQDLLDAVNKLDIKDVLEIKFHENRQNGQSKGFCVMVFGSDKSAKEAMEKLPKIEIHSLNPIVTYCNKQNLNYFE 519 MAD ++ ID+Y E + E +DLYDDV ES+ NS + V+S S NN ++GR RV+ Y+GN WWTTDQ LL + + IKD +EIKF ENR NGQSKGF ++ S+ S +E LP+ +++ V N+QNL++FE Sbjct: 1 MADGADLIDIYAEEEFIQESEFAAEQVDLYDDVLAVPAISSSHVESNRNSSALEPTSPVQSTSPMSNNKTPEVLYHSGRNRVSMYIGNFSWWTTDQQLLALIRSVGIKDHVEIKFAENRANGQSKGFAEVILSSESSMNLILEHLPQKKLNGKKLDVRPANRQNLSFFE 169
BLAST of Cleavage and polyadenylation specificity factor subunit 6 vs. Ensembl Xenopus
Match: nkx6-1 (NK6 homeobox 1 [Source:Xenbase;Acc:XB-GENE-483574]) HSP 1 Score: 98.9821 bits (245), Expect = 2.005e-21 Identity = 61/151 (40.40%), Postives = 84/151 (55.63%), Query Frame = 1 Query: 139 EDNWKRESLDLYDDV-----------ESHSNS---DNQRDVKSCS--QNN-------YTGR-RVATYVGNLRWWTTDQDLLDAVNKLDIKDVLEIKFHENRQNGQSKGFCVMVFGSDKSAKEAMEKLPKIEIHSLNPIVTYCNKQNLNYFE 519 E + E +DLYDDV ES+ NS + V+S S NN ++GR RV+ Y+GN WWTTDQ LL + + IKD +EIKF ENR NGQSKGF ++ S+ S +E LP+ +++ V N+QNL++FE Sbjct: 30 ESEFAAEQVDLYDDVLAVPAISSSHVESNRNSSALEPTSPVQSTSPMSNNKTPEVLYHSGRNRVSMYIGNFSWWTTDQQLLALIRSVGIKDHVEIKFAENRANGQSKGFAEVILSSESSMNLILEHLPQKKLNGKKLDVRPANRQNLSFFE 180 HSP 2 Score: 91.2781 bits (225), Expect = 6.866e-19 Identity = 41/77 (53.25%), Postives = 63/77 (81.82%), Query Frame = 1 Query: 1114 EFEDILQRNKTVSSSAINRAVQDASAGDYASAIETLVTAISLIKQSKIASDSRCKVLINSLQDTLTGIESKSYGSRK 1344 EFE+++ RN+ +S SA++ AV A++GDYA+AI+TL TAI++IK+S++A+D RC+VL+ SL+D L GI+ K+ SRK Sbjct: 344 EFEELMNRNRAISRSALSNAVCGATSGDYANAIKTLETAIAVIKESRVANDDRCRVLLTSLKDCLHGIQDKANSSRK 420
BLAST of Cleavage and polyadenylation specificity factor subunit 6 vs. Ensembl Mouse
Match: Cpsf6 (cleavage and polyadenylation specific factor 6 [Source:MGI Symbol;Acc:MGI:1913948]) HSP 1 Score: 135.961 bits (341), Expect = 1.879e-33 Identity = 75/168 (44.64%), Postives = 103/168 (61.31%), Query Frame = 1 Query: 100 MADESE-IDLYDNMEDNWKRES-------LDLYDDVESHS--NSDNQRDV---------------KSCSQN---NYTGRRVATYVGNLRWWTTDQDLLDAVNKLDIKDVLEIKFHENRQNGQSKGFCVMVFGSDKSAKEAMEKLPKIEIHSLNPIVTYCNKQNLNYFE 519 MAD + ID+Y ++ + + +E+ +DLYDDV S S N D D K + N YTG+R+A Y+GNL WWTTD+DL +AV+ L + D+LEIKF ENR NGQSKGF ++ GS+ S+K+ M+ LPK E+H +P+VT CNKQ L+ FE Sbjct: 1 MADGVDHIDIYADVGEEFNQEAEYGGHDQIDLYDDVISPSANNGDAPEDRDYMDTLPPTVGDDVGKGAAPNVVYTYTGKRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQSPVVTPCNKQFLSQFE 168 HSP 2 Score: 119.398 bits (298), Expect = 6.079e-28 Identity = 57/73 (78.08%), Postives = 66/73 (90.41%), Query Frame = 1 Query: 1114 EFEDILQRNKTVSSSAINRAVQDASAGDYASAIETLVTAISLIKQSKIASDSRCKVLINSLQDTLTGIESKSY 1332 EFE+I+ RN+ +SSSAI+RAV DASAGDY SAIETLVTAISLIKQSK+++D RCKVLI+SLQD L GIESKSY Sbjct: 413 EFEEIMNRNRAISSSAISRAVSDASAGDYGSAIETLVTAISLIKQSKVSADDRCKVLISSLQDCLHGIESKSY 485
BLAST of Cleavage and polyadenylation specificity factor subunit 6 vs. Ensembl Mouse
Match: Cpsf6 (cleavage and polyadenylation specific factor 6 [Source:MGI Symbol;Acc:MGI:1913948]) HSP 1 Score: 135.961 bits (341), Expect = 1.879e-33 Identity = 75/168 (44.64%), Postives = 103/168 (61.31%), Query Frame = 1 Query: 100 MADESE-IDLYDNMEDNWKRES-------LDLYDDVESHS--NSDNQRDV---------------KSCSQN---NYTGRRVATYVGNLRWWTTDQDLLDAVNKLDIKDVLEIKFHENRQNGQSKGFCVMVFGSDKSAKEAMEKLPKIEIHSLNPIVTYCNKQNLNYFE 519 MAD + ID+Y ++ + + +E+ +DLYDDV S S N D D K + N YTG+R+A Y+GNL WWTTD+DL +AV+ L + D+LEIKF ENR NGQSKGF ++ GS+ S+K+ M+ LPK E+H +P+VT CNKQ L+ FE Sbjct: 1 MADGVDHIDIYADVGEEFNQEAEYGGHDQIDLYDDVISPSANNGDAPEDRDYMDTLPPTVGDDVGKGAAPNVVYTYTGKRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQSPVVTPCNKQFLSQFE 168 HSP 2 Score: 119.398 bits (298), Expect = 6.079e-28 Identity = 57/73 (78.08%), Postives = 66/73 (90.41%), Query Frame = 1 Query: 1114 EFEDILQRNKTVSSSAINRAVQDASAGDYASAIETLVTAISLIKQSKIASDSRCKVLINSLQDTLTGIESKSY 1332 EFE+I+ RN+ +SSSAI+RAV DASAGDY SAIETLVTAISLIKQSK+++D RCKVLI+SLQD L GIESKSY Sbjct: 413 EFEEIMNRNRAISSSAISRAVSDASAGDYGSAIETLVTAISLIKQSKVSADDRCKVLISSLQDCLHGIESKSY 485
BLAST of Cleavage and polyadenylation specificity factor subunit 6 vs. Ensembl Mouse
Match: Cpsf6 (cleavage and polyadenylation specific factor 6 [Source:MGI Symbol;Acc:MGI:1913948]) HSP 1 Score: 135.961 bits (341), Expect = 1.898e-33 Identity = 75/168 (44.64%), Postives = 103/168 (61.31%), Query Frame = 1 Query: 100 MADESE-IDLYDNMEDNWKRES-------LDLYDDVESHS--NSDNQRDV---------------KSCSQN---NYTGRRVATYVGNLRWWTTDQDLLDAVNKLDIKDVLEIKFHENRQNGQSKGFCVMVFGSDKSAKEAMEKLPKIEIHSLNPIVTYCNKQNLNYFE 519 MAD + ID+Y ++ + + +E+ +DLYDDV S S N D D K + N YTG+R+A Y+GNL WWTTD+DL +AV+ L + D+LEIKF ENR NGQSKGF ++ GS+ S+K+ M+ LPK E+H +P+VT CNKQ L+ FE Sbjct: 1 MADGVDHIDIYADVGEEFNQEAEYGGHDQIDLYDDVISPSANNGDAPEDRDYMDTLPPTVGDDVGKGAAPNVVYTYTGKRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQSPVVTPCNKQFLSQFE 168 HSP 2 Score: 119.398 bits (298), Expect = 6.121e-28 Identity = 57/73 (78.08%), Postives = 66/73 (90.41%), Query Frame = 1 Query: 1114 EFEDILQRNKTVSSSAINRAVQDASAGDYASAIETLVTAISLIKQSKIASDSRCKVLINSLQDTLTGIESKSY 1332 EFE+I+ RN+ +SSSAI+RAV DASAGDY SAIETLVTAISLIKQSK+++D RCKVLI+SLQD L GIESKSY Sbjct: 413 EFEEIMNRNRAISSSAISRAVSDASAGDYGSAIETLVTAISLIKQSKVSADDRCKVLISSLQDCLHGIESKSY 485
BLAST of Cleavage and polyadenylation specificity factor subunit 6 vs. Ensembl Mouse
Match: Cpsf6 (cleavage and polyadenylation specific factor 6 [Source:MGI Symbol;Acc:MGI:1913948]) HSP 1 Score: 135.961 bits (341), Expect = 2.734e-33 Identity = 75/168 (44.64%), Postives = 103/168 (61.31%), Query Frame = 1 Query: 100 MADESE-IDLYDNMEDNWKRES-------LDLYDDVESHS--NSDNQRDV---------------KSCSQN---NYTGRRVATYVGNLRWWTTDQDLLDAVNKLDIKDVLEIKFHENRQNGQSKGFCVMVFGSDKSAKEAMEKLPKIEIHSLNPIVTYCNKQNLNYFE 519 MAD + ID+Y ++ + + +E+ +DLYDDV S S N D D K + N YTG+R+A Y+GNL WWTTD+DL +AV+ L + D+LEIKF ENR NGQSKGF ++ GS+ S+K+ M+ LPK E+H +P+VT CNKQ L+ FE Sbjct: 1 MADGVDHIDIYADVGEEFNQEAEYGGHDQIDLYDDVISPSANNGDAPEDRDYMDTLPPTVGDDVGKGAAPNVVYTYTGKRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQSPVVTPCNKQFLSQFE 168 HSP 2 Score: 119.398 bits (298), Expect = 8.080e-28 Identity = 57/73 (78.08%), Postives = 66/73 (90.41%), Query Frame = 1 Query: 1114 EFEDILQRNKTVSSSAINRAVQDASAGDYASAIETLVTAISLIKQSKIASDSRCKVLINSLQDTLTGIESKSY 1332 EFE+I+ RN+ +SSSAI+RAV DASAGDY SAIETLVTAISLIKQSK+++D RCKVLI+SLQD L GIESKSY Sbjct: 450 EFEEIMNRNRAISSSAISRAVSDASAGDYGSAIETLVTAISLIKQSKVSADDRCKVLISSLQDCLHGIESKSY 522
BLAST of Cleavage and polyadenylation specificity factor subunit 6 vs. Ensembl Mouse
Match: Cpsf6 (cleavage and polyadenylation specific factor 6 [Source:MGI Symbol;Acc:MGI:1913948]) HSP 1 Score: 120.168 bits (300), Expect = 7.281e-31 Identity = 57/73 (78.08%), Postives = 66/73 (90.41%), Query Frame = 1 Query: 1114 EFEDILQRNKTVSSSAINRAVQDASAGDYASAIETLVTAISLIKQSKIASDSRCKVLINSLQDTLTGIESKSY 1332 EFE+I+ RN+ +SSSAI+RAV DASAGDY SAIETLVTAISLIKQSK+++D RCKVLI+SLQD L GIESKSY Sbjct: 43 EFEEIMNRNRAISSSAISRAVSDASAGDYGSAIETLVTAISLIKQSKVSADDRCKVLISSLQDCLHGIESKSY 115
BLAST of Cleavage and polyadenylation specificity factor subunit 6 vs. UniProt/SwissProt
Match: sp|Q6NWC6|CPSF6_DANRE (Cleavage and polyadenylation specificity factor subunit 6 OS=Danio rerio OX=7955 GN=cpsf6 PE=2 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 2.453e-33 Identity = 78/168 (46.43%), Postives = 100/168 (59.52%), Query Frame = 1 Query: 100 MADE-SEIDLYDNMEDNWKRES-------LDLYDDVESHS--NSDNQRD---------------VKSCSQN---NYTGRRVATYVGNLRWWTTDQDLLDAVNKLDIKDVLEIKFHENRQNGQSKGFCVMVFGSDKSAKEAMEKLPKIEIHSLNPIVTYCNKQNLNYFE 519 MAD ID+Y ++E+ + +ES +DLYDDV S S N D D K N Y G+R+A Y+GNL WWTTD+DL DA+ + I DVLEIKF ENR NGQSKGF ++ GSD S+++ M+ L K E+H NPIVT CNKQ+L+ FE Sbjct: 1 MADGVDHIDIYADVEEEFNQESDYPVHDQIDLYDDVISPSANNGDAPEDRDYLDSLPAPGGNEGSKGAPANVVYTYNGKRIALYIGNLTWWTTDEDLTDAIRSIGINDVLEIKFFENRANGQSKGFALVCVGSDSSSRKLMDLLSKRELHGQNPIVTPCNKQSLSQFE 168 HSP 2 Score: 120.553 bits (301), Expect = 1.977e-27 Identity = 58/75 (77.33%), Postives = 67/75 (89.33%), Query Frame = 1 Query: 1114 EFEDILQRNKTVSSSAINRAVQDASAGDYASAIETLVTAISLIKQSKIASDSRCKVLINSLQDTLTGIESKSYGS 1338 EFE+I+ RN+ +SSSAI+RAV DASA DY SAIETLVTAISLIKQSK+++D RCKVLI+SLQD L GIESKSYGS Sbjct: 406 EFEEIMNRNRAISSSAISRAVSDASAADYGSAIETLVTAISLIKQSKVSADDRCKVLISSLQDCLHGIESKSYGS 480
BLAST of Cleavage and polyadenylation specificity factor subunit 6 vs. UniProt/SwissProt
Match: sp|Q16630|CPSF6_HUMAN (Cleavage and polyadenylation specificity factor subunit 6 OS=Homo sapiens OX=9606 GN=CPSF6 PE=1 SV=2) HSP 1 Score: 137.887 bits (346), Expect = 2.976e-33 Identity = 76/168 (45.24%), Postives = 103/168 (61.31%), Query Frame = 1 Query: 100 MADESE-IDLYDNMEDNWKRES-------LDLYDDVESHS--NSDNQRDV---------------KSCSQN---NYTGRRVATYVGNLRWWTTDQDLLDAVNKLDIKDVLEIKFHENRQNGQSKGFCVMVFGSDKSAKEAMEKLPKIEIHSLNPIVTYCNKQNLNYFE 519 MAD + ID+Y ++ + + +E+ +DLYDDV S S N D D K + N YTG+R+A Y+GNL WWTTD+DL +AV+ L + D+LEIKF ENR NGQSKGF ++ GS+ S+K+ M+ LPK E+H NP+VT CNKQ L+ FE Sbjct: 1 MADGVDHIDIYADVGEEFNQEAEYGGHDQIDLYDDVISPSANNGDAPEDRDYMDTLPPTVGDDVGKGAAPNVVYTYTGKRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPCNKQFLSQFE 168 HSP 2 Score: 119.398 bits (298), Expect = 4.214e-27 Identity = 57/73 (78.08%), Postives = 66/73 (90.41%), Query Frame = 1 Query: 1114 EFEDILQRNKTVSSSAINRAVQDASAGDYASAIETLVTAISLIKQSKIASDSRCKVLINSLQDTLTGIESKSY 1332 EFE+I+ RN+ +SSSAI+RAV DASAGDY SAIETLVTAISLIKQSK+++D RCKVLI+SLQD L GIESKSY Sbjct: 413 EFEEIMNRNRAISSSAISRAVSDASAGDYGSAIETLVTAISLIKQSKVSADDRCKVLISSLQDCLHGIESKSY 485
BLAST of Cleavage and polyadenylation specificity factor subunit 6 vs. UniProt/SwissProt
Match: sp|Q0P5D2|CPSF6_BOVIN (Cleavage and polyadenylation specificity factor subunit 6 OS=Bos taurus OX=9913 GN=CPSF6 PE=2 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 2.976e-33 Identity = 76/168 (45.24%), Postives = 103/168 (61.31%), Query Frame = 1 Query: 100 MADESE-IDLYDNMEDNWKRES-------LDLYDDVESHS--NSDNQRDV---------------KSCSQN---NYTGRRVATYVGNLRWWTTDQDLLDAVNKLDIKDVLEIKFHENRQNGQSKGFCVMVFGSDKSAKEAMEKLPKIEIHSLNPIVTYCNKQNLNYFE 519 MAD + ID+Y ++ + + +E+ +DLYDDV S S N D D K + N YTG+R+A Y+GNL WWTTD+DL +AV+ L + D+LEIKF ENR NGQSKGF ++ GS+ S+K+ M+ LPK E+H NP+VT CNKQ L+ FE Sbjct: 1 MADGVDHIDIYADVGEEFNQEAEYGGHDQIDLYDDVISPSANNGDAPEDRDYMDTLPPTVGDDVGKGAAPNVVYTYTGKRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPCNKQFLSQFE 168 HSP 2 Score: 119.398 bits (298), Expect = 4.214e-27 Identity = 57/73 (78.08%), Postives = 66/73 (90.41%), Query Frame = 1 Query: 1114 EFEDILQRNKTVSSSAINRAVQDASAGDYASAIETLVTAISLIKQSKIASDSRCKVLINSLQDTLTGIESKSY 1332 EFE+I+ RN+ +SSSAI+RAV DASAGDY SAIETLVTAISLIKQSK+++D RCKVLI+SLQD L GIESKSY Sbjct: 413 EFEEIMNRNRAISSSAISRAVSDASAGDYGSAIETLVTAISLIKQSKVSADDRCKVLISSLQDCLHGIESKSY 485
BLAST of Cleavage and polyadenylation specificity factor subunit 6 vs. UniProt/SwissProt
Match: sp|Q5ZL34|CPSF6_CHICK (Cleavage and polyadenylation specificity factor subunit 6 OS=Gallus gallus OX=9031 GN=CPSF6 PE=2 SV=1) HSP 1 Score: 137.502 bits (345), Expect = 3.910e-33 Identity = 76/168 (45.24%), Postives = 102/168 (60.71%), Query Frame = 1 Query: 100 MADE-SEIDLYDNMEDNWKRES-------LDLYDDVESHS--NSDNQRDV---------------KSCSQN---NYTGRRVATYVGNLRWWTTDQDLLDAVNKLDIKDVLEIKFHENRQNGQSKGFCVMVFGSDKSAKEAMEKLPKIEIHSLNPIVTYCNKQNLNYFE 519 MAD ID+Y ++ + + +E+ +DLYDDV S S N D D K + N YTG+R+A Y+GNL WWTTD+DL +AV+ L + D+LEIKF ENR NGQSKGF ++ GS+ S+K+ M+ LPK E+H NP+VT CNKQ L+ FE Sbjct: 1 MADGVDHIDIYADVGEEFNQEAEYGGHDQIDLYDDVISPSANNGDAPEDRDYMDSLPPSVGDDVGKGAAPNVVYTYTGKRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPCNKQFLSQFE 168 HSP 2 Score: 119.398 bits (298), Expect = 4.291e-27 Identity = 57/73 (78.08%), Postives = 66/73 (90.41%), Query Frame = 1 Query: 1114 EFEDILQRNKTVSSSAINRAVQDASAGDYASAIETLVTAISLIKQSKIASDSRCKVLINSLQDTLTGIESKSY 1332 EFE+I+ RN+ +SSSAI+RAV DASAGDY SAIETLVTAISLIKQSK+++D RCKVLI+SLQD L GIESKSY Sbjct: 413 EFEEIMNRNRAISSSAISRAVSDASAGDYGSAIETLVTAISLIKQSKVSADDRCKVLISSLQDCLHGIESKSY 485
BLAST of Cleavage and polyadenylation specificity factor subunit 6 vs. UniProt/SwissProt
Match: sp|Q6NVF9|CPSF6_MOUSE (Cleavage and polyadenylation specificity factor subunit 6 OS=Mus musculus OX=10090 GN=Cpsf6 PE=1 SV=1) HSP 1 Score: 135.961 bits (341), Expect = 1.315e-32 Identity = 75/168 (44.64%), Postives = 103/168 (61.31%), Query Frame = 1 Query: 100 MADESE-IDLYDNMEDNWKRES-------LDLYDDVESHS--NSDNQRDV---------------KSCSQN---NYTGRRVATYVGNLRWWTTDQDLLDAVNKLDIKDVLEIKFHENRQNGQSKGFCVMVFGSDKSAKEAMEKLPKIEIHSLNPIVTYCNKQNLNYFE 519 MAD + ID+Y ++ + + +E+ +DLYDDV S S N D D K + N YTG+R+A Y+GNL WWTTD+DL +AV+ L + D+LEIKF ENR NGQSKGF ++ GS+ S+K+ M+ LPK E+H +P+VT CNKQ L+ FE Sbjct: 1 MADGVDHIDIYADVGEEFNQEAEYGGHDQIDLYDDVISPSANNGDAPEDRDYMDTLPPTVGDDVGKGAAPNVVYTYTGKRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQSPVVTPCNKQFLSQFE 168 HSP 2 Score: 119.398 bits (298), Expect = 4.252e-27 Identity = 57/73 (78.08%), Postives = 66/73 (90.41%), Query Frame = 1 Query: 1114 EFEDILQRNKTVSSSAINRAVQDASAGDYASAIETLVTAISLIKQSKIASDSRCKVLINSLQDTLTGIESKSY 1332 EFE+I+ RN+ +SSSAI+RAV DASAGDY SAIETLVTAISLIKQSK+++D RCKVLI+SLQD L GIESKSY Sbjct: 413 EFEEIMNRNRAISSSAISRAVSDASAGDYGSAIETLVTAISLIKQSKVSADDRCKVLISSLQDCLHGIESKSY 485
BLAST of Cleavage and polyadenylation specificity factor subunit 6 vs. TrEMBL
Match: A0A5J4NZ24 (Cleavage and polyadenylation specificity factor subunit 6/7 OS=Paragonimus westermani OX=34504 GN=DEA37_0004503 PE=4 SV=1) HSP 1 Score: 184.111 bits (466), Expect = 7.619e-47 Identity = 90/154 (58.44%), Postives = 112/154 (72.73%), Query Frame = 1 Query: 100 MADE--SEIDLYDNMEDNWKRESLDL---YDDVESHSNSDNQRDVKSC-----SQNN---YTGRRVATYVGNLRWWTTDQDLLDAVNKLDIKDVLEIKFHENRQNGQSKGFCVMVFGSDKSAKEAMEKLPKIEIHSLNPIVTYCNKQNLNYFEQ 522 MA E +EIDLYDN+++++ +E DL YDDV + S S+ S S NN + GRR+ATYVGNL WWTTDQDLL+A NKL I DV+EIKFHENRQNGQSKGFC MVFGS++S + AM+K+PK EIH P+VT+C KQNL+ FE+ Sbjct: 1 MAGEGGAEIDLYDNIDEDFVQECSDLTELYDDVIAPSTSEAAITAPSVVLSKPSLNNLGLHNGRRIATYVGNLTWWTTDQDLLEAANKLGINDVIEIKFHENRQNGQSKGFCAMVFGSEQSVRVAMDKMPKTEIHGQKPVVTHCTKQNLSVFEK 154 HSP 2 Score: 140.584 bits (353), Expect = 1.455e-31 Identity = 75/100 (75.00%), Postives = 86/100 (86.00%), Query Frame = 1 Query: 1039 FDAFGRPIXXXXXXXXXXXXXXXXXEFEDILQRNKTVSSSAINRAVQDASAGDYASAIETLVTAISLIKQSKIASDSRCKVLINSLQDTLTGIESKSYGS 1338 FD +GRP+ ++++ SS S +FEDILQRNKTVSSSAINRAVQDA+ GDYASAIETLVTAISLIKQSKIASD RC++LINSLQDTL GIESKSYG+ Sbjct: 345 FDNYGRPVIHTYTPSSTGKLSES--DFEDILQRNKTVSSSAINRAVQDAAGGDYASAIETLVTAISLIKQSKIASDDRCRILINSLQDTLHGIESKSYGT 442
BLAST of Cleavage and polyadenylation specificity factor subunit 6 vs. TrEMBL
Match: A0A4S2LG73 (RRM domain-containing protein OS=Opisthorchis felineus OX=147828 GN=CRM22_007412 PE=4 SV=1) HSP 1 Score: 180.644 bits (457), Expect = 9.915e-47 Identity = 86/149 (57.72%), Postives = 108/149 (72.48%), Query Frame = 1 Query: 112 SEIDLYDNMEDNWKRESLDL---YDDVESHSNSDNQRD-------VKSC--SQNNYTGRRVATYVGNLRWWTTDQDLLDAVNKLDIKDVLEIKFHENRQNGQSKGFCVMVFGSDKSAKEAMEKLPKIEIHSLNPIVTYCNKQNLNYFEQ 522 +EIDLYDN+++++ +E DL YDDV + +N KS + +++G+RV TYVGNL WWTTDQDLL+ N L I DV+EIKFHENRQNGQSKGFCVMVFGSD+SA+ AMEKLPK EIH NP+VT+C K NL+ FE+ Sbjct: 7 AEIDLYDNIDEDFVQECADLNELYDDVMAPGAQNNTASKPESPVVTKSTLTTVASHSGKRVETYVGNLTWWTTDQDLLETTNALGINDVVEIKFHENRQNGQSKGFCVMVFGSDQSARTAMEKLPKTEIHGQNPVVTHCTKHNLSIFEK 155 HSP 2 Score: 141.354 bits (355), Expect = 1.216e-32 Identity = 75/100 (75.00%), Postives = 88/100 (88.00%), Query Frame = 1 Query: 1039 FDAFGRPIXXXXXXXXXXXXXXXXXEFEDILQRNKTVSSSAINRAVQDASAGDYASAIETLVTAISLIKQSKIASDSRCKVLINSLQDTLTGIESKSYGS 1338 FD +GRP+ ++++ SS+ S EFEDILQRNKTVSSSAINRAVQDA++GDYASAIETLVTAISLIKQSKIA+D RC++LINSLQDTL GIESKSYG+ Sbjct: 347 FDNYGRPVIHTYTPSSSGKLSES--EFEDILQRNKTVSSSAINRAVQDAASGDYASAIETLVTAISLIKQSKIANDDRCRILINSLQDTLHGIESKSYGT 444
BLAST of Cleavage and polyadenylation specificity factor subunit 6 vs. TrEMBL
Match: A0A3P6TLS9 (RRM domain-containing protein (Fragment) OS=Dibothriocephalus latus OX=60516 GN=DILT_LOCUS3073 PE=4 SV=1) HSP 1 Score: 174.866 bits (442), Expect = 5.384e-46 Identity = 83/145 (57.24%), Postives = 108/145 (74.48%), Query Frame = 1 Query: 112 SEIDLYDNMEDNWKRES---LDLYDDVESHSNSD--NQRDVK---SCSQNNYTGRRVATYVGNLRWWTTDQDLLDAVNKLDIKDVLEIKFHENRQNGQSKGFCVMVFGSDKSAKEAMEKLPKIEIHSLNPIVTYCNKQNLNYFEQ 522 +EIDLYDN+E+++ ++S +LYDDV + +SD + D+K + +TGRR+ATYVGNL WWTTD DL A N L I D+LEIKFHENRQNGQSKGFCV+VFGS++S + AMEKL KIEI+ P++TYC K NL+ FE+ Sbjct: 7 AEIDLYDNIEEDFVQDSSELTELYDDVIAPPSSDTTSHNDIKPNLATPSATHTGRRIATYVGNLTWWTTDVDLYTAFNNLGITDILEIKFHENRQNGQSKGFCVIVFGSEQSVRTAMEKLSKIEINGQTPVITYCTKHNLSLFEK 151
BLAST of Cleavage and polyadenylation specificity factor subunit 6 vs. TrEMBL
Match: A0A4V3SDY8 (RRM domain-containing protein OS=Opisthorchis felineus OX=147828 GN=CRM22_007412 PE=4 SV=1) HSP 1 Score: 179.489 bits (454), Expect = 7.905e-46 Identity = 86/149 (57.72%), Postives = 108/149 (72.48%), Query Frame = 1 Query: 112 SEIDLYDNMEDNWKRESLDL---YDDVESHSNSDNQRD-------VKSC--SQNNYTGRRVATYVGNLRWWTTDQDLLDAVNKLDIKDVLEIKFHENRQNGQSKGFCVMVFGSDKSAKEAMEKLPKIEIHSLNPIVTYCNKQNLNYFEQ 522 +EIDLYDN+++++ +E DL YDDV + +N KS + +++G+RV TYVGNL WWTTDQDLL+ N L I DV+EIKFHENRQNGQSKGFCVMVFGSD+SA+ AMEKLPK EIH NP+VT+C K NL+ FE+ Sbjct: 7 AEIDLYDNIDEDFVQECADLNELYDDVMAPGAQNNTASKPESPVVTKSTLTTVASHSGKRVETYVGNLTWWTTDQDLLETTNALGINDVVEIKFHENRQNGQSKGFCVMVFGSDQSARTAMEKLPKTEIHGQNPVVTHCTKHNLSIFEK 155 HSP 2 Score: 141.354 bits (355), Expect = 3.207e-32 Identity = 75/100 (75.00%), Postives = 88/100 (88.00%), Query Frame = 1 Query: 1039 FDAFGRPIXXXXXXXXXXXXXXXXXEFEDILQRNKTVSSSAINRAVQDASAGDYASAIETLVTAISLIKQSKIASDSRCKVLINSLQDTLTGIESKSYGS 1338 FD +GRP+ ++++ SS+ S EFEDILQRNKTVSSSAINRAVQDA++GDYASAIETLVTAISLIKQSKIA+D RC++LINSLQDTL GIESKSYG+ Sbjct: 347 FDNYGRPVIHTYTPSSSGKLSES--EFEDILQRNKTVSSSAINRAVQDAASGDYASAIETLVTAISLIKQSKIANDDRCRILINSLQDTLHGIESKSYGT 444
BLAST of Cleavage and polyadenylation specificity factor subunit 6 vs. TrEMBL
Match: A0A4S2LI57 (RRM domain-containing protein OS=Opisthorchis felineus OX=147828 GN=CRM22_007412 PE=4 SV=1) HSP 1 Score: 180.259 bits (456), Expect = 1.213e-45 Identity = 86/149 (57.72%), Postives = 108/149 (72.48%), Query Frame = 1 Query: 112 SEIDLYDNMEDNWKRESLDL---YDDVESHSNSDNQRD-------VKSC--SQNNYTGRRVATYVGNLRWWTTDQDLLDAVNKLDIKDVLEIKFHENRQNGQSKGFCVMVFGSDKSAKEAMEKLPKIEIHSLNPIVTYCNKQNLNYFEQ 522 +EIDLYDN+++++ +E DL YDDV + +N KS + +++G+RV TYVGNL WWTTDQDLL+ N L I DV+EIKFHENRQNGQSKGFCVMVFGSD+SA+ AMEKLPK EIH NP+VT+C K NL+ FE+ Sbjct: 7 AEIDLYDNIDEDFVQECADLNELYDDVMAPGAQNNTASKPESPVVTKSTLTTVASHSGKRVETYVGNLTWWTTDQDLLETTNALGINDVVEIKFHENRQNGQSKGFCVMVFGSDQSARTAMEKLPKTEIHGQNPVVTHCTKHNLSIFEK 155 HSP 2 Score: 142.51 bits (358), Expect = 2.542e-32 Identity = 75/101 (74.26%), Postives = 89/101 (88.12%), Query Frame = 1 Query: 1039 FDAFGRPIXXXXXXXXXXXXXXXXXEFEDILQRNKTVSSSAINRAVQDASAGDYASAIETLVTAISLIKQSKIASDSRCKVLINSLQDTLTGIESKSYGSR 1341 FD +GRP+ ++++ SS+ S EFEDILQRNKTVSSSAINRAVQDA++GDYASAIETLVTAISLIKQSKIA+D RC++LINSLQDTL GIESKSYG++ Sbjct: 347 FDNYGRPVIHTYTPSSSGKLSES--EFEDILQRNKTVSSSAINRAVQDAASGDYASAIETLVTAISLIKQSKIANDDRCRILINSLQDTLHGIESKSYGTK 445
BLAST of Cleavage and polyadenylation specificity factor subunit 6 vs. Ensembl Cavefish
Match: cpsf6 (cleavage and polyadenylation specific factor 6 [Source:NCBI gene;Acc:327069]) HSP 1 Score: 136.346 bits (342), Expect = 8.879e-34 Identity = 71/163 (43.56%), Postives = 101/163 (61.96%), Query Frame = 1 Query: 64 NEVIIYSD---SLTKMAD---ESEIDLYDNM-----EDNWKRESLDLYDDVESHSNSDNQRDVKSCSQNNYTGRRVATYVGNLRWWTTDQDLLDAVNKLDIKDVLEIKFHENRQNGQSKGFCVMVFGSDKSAKEAMEKLPKIEIHSLNPIVTYCNKQNLNYFE 519 + + IY+D T+ AD +IDLYD++ + E D D++ + S+ + S YTG+R+A Y+GNL WWTTD+DL +A+ + I DVLEIKF ENR NGQSKGF ++ GSD S+++ ++ L K E+H NPIVT CNKQ+L+ FE Sbjct: 6 DHIDIYADVEEEFTQEADYPVHEQIDLYDDVISPSANNGDAPEDRDYLDNLPAPGGSEGSKGPPSNIVFTYTGKRIALYIGNLTWWTTDEDLTEAIRSIGINDVLEIKFFENRANGQSKGFALVCVGSDSSSRKLLDLLSKRELHGQNPIVTPCNKQSLSQFE 168 HSP 2 Score: 120.553 bits (301), Expect = 2.128e-28 Identity = 58/75 (77.33%), Postives = 67/75 (89.33%), Query Frame = 1 Query: 1114 EFEDILQRNKTVSSSAINRAVQDASAGDYASAIETLVTAISLIKQSKIASDSRCKVLINSLQDTLTGIESKSYGS 1338 EFE+I+ RN+ +SSSAI+RAV DASA DY SAIETLVTAISLIKQSK+++D RCKVLI+SLQD L GIESKSYGS Sbjct: 398 EFEEIMNRNRAISSSAISRAVSDASAADYGSAIETLVTAISLIKQSKVSADDRCKVLISSLQDCLHGIESKSYGS 472
BLAST of Cleavage and polyadenylation specificity factor subunit 6 vs. Ensembl Cavefish
Match: cpsf6 (cleavage and polyadenylation specific factor 6 [Source:NCBI gene;Acc:327069]) HSP 1 Score: 133.65 bits (335), Expect = 2.610e-33 Identity = 71/163 (43.56%), Postives = 101/163 (61.96%), Query Frame = 1 Query: 64 NEVIIYSD---SLTKMAD---ESEIDLYDNM-----EDNWKRESLDLYDDVESHSNSDNQRDVKSCSQNNYTGRRVATYVGNLRWWTTDQDLLDAVNKLDIKDVLEIKFHENRQNGQSKGFCVMVFGSDKSAKEAMEKLPKIEIHSLNPIVTYCNKQNLNYFE 519 + + IY+D T+ AD +IDLYD++ + E D D++ + S+ + S YTG+R+A Y+GNL WWTTD+DL +A+ + I DVLEIKF ENR NGQSKGF ++ GSD S+++ ++ L K E+H NPIVT CNKQ+L+ FE Sbjct: 6 DHIDIYADVEEEFTQEADYPVHEQIDLYDDVISPSANNGDAPEDRDYLDNLPAPGGSEGSKGPPSNIVFTYTGKRIALYIGNLTWWTTDEDLTEAIRSIGINDVLEIKFFENRANGQSKGFALVCVGSDSSSRKLLDLLSKRELHGQNPIVTPCNKQSLSQFE 168 HSP 2 Score: 119.783 bits (299), Expect = 1.631e-28 Identity = 58/75 (77.33%), Postives = 67/75 (89.33%), Query Frame = 1 Query: 1114 EFEDILQRNKTVSSSAINRAVQDASAGDYASAIETLVTAISLIKQSKIASDSRCKVLINSLQDTLTGIESKSYGS 1338 EFE+I+ RN+ +SSSAI+RAV DASA DY SAIETLVTAISLIKQSK+++D RCKVLI+SLQD L GIESKSYGS Sbjct: 314 EFEEIMNRNRAISSSAISRAVSDASAADYGSAIETLVTAISLIKQSKVSADDRCKVLISSLQDCLHGIESKSYGS 388
BLAST of Cleavage and polyadenylation specificity factor subunit 6 vs. Ensembl Cavefish
Match: cpsf6 (cleavage and polyadenylation specific factor 6 [Source:NCBI gene;Acc:327069]) HSP 1 Score: 120.553 bits (301), Expect = 1.436e-28 Identity = 58/75 (77.33%), Postives = 67/75 (89.33%), Query Frame = 1 Query: 1114 EFEDILQRNKTVSSSAINRAVQDASAGDYASAIETLVTAISLIKQSKIASDSRCKVLINSLQDTLTGIESKSYGS 1338 EFE+I+ RN+ +SSSAI+RAV DASA DY SAIETLVTAISLIKQSK+++D RCKVLI+SLQD L GIESKSYGS Sbjct: 378 EFEEIMNRNRAISSSAISRAVSDASAADYGSAIETLVTAISLIKQSKVSADDRCKVLISSLQDCLHGIESKSYGS 452 HSP 2 Score: 95.5153 bits (236), Expect = 2.546e-20 Identity = 52/124 (41.94%), Postives = 73/124 (58.87%), Query Frame = 1 Query: 64 NEVIIYSD---SLTKMAD---ESEIDLYDNM-----EDNWKRESLDLYDDVESHSNSDNQRDVKSCSQNNYTGRRVATYVGNLRWWTTDQDLLDAVNKLDIKDVLEIKFHENRQNGQSKG-FCV 399 + + IY+D T+ AD +IDLYD++ + E D D++ + S+ + S YTG+R+A Y+GNL WWTTD+DL +A+ + I DVLEIKF ENR NGQSKG FC+ Sbjct: 6 DHIDIYADVEEEFTQEADYPVHEQIDLYDDVISPSANNGDAPEDRDYLDNLPAPGGSEGSKGPPSNIVFTYTGKRIALYIGNLTWWTTDEDLTEAIRSIGINDVLEIKFFENRANGQSKGSFCL 129
BLAST of Cleavage and polyadenylation specificity factor subunit 6 vs. Ensembl Cavefish
Match: CPSF7 (cleavage and polyadenylation specific factor 7 [Source:NCBI gene;Acc:103027160]) HSP 1 Score: 100.523 bits (249), Expect = 3.315e-22 Identity = 60/162 (37.04%), Postives = 89/162 (54.94%), Query Frame = 1 Query: 100 MADESE-IDLYDNME-----DNWKRESLDLYDDVESHS------------NSDNQRDV----KSCSQNNYTGRRVATYVGNLRWWTTDQDLLDAVNKLDIKDVLEIKFHENRQNGQSKGFCVMVFGSDKSAKEAMEKLPKIEIHSLNPIVTYCNKQNLNYFE 519 MA +E ID+YD ++ D E+ LYDDV + S DN+ +V K C+ + +R + YVGN WWT+D+DL++ L +KDV++IKF ENR NGQS+GF +V S++S K+ M+ +P +I+ Y +QNL FE Sbjct: 1 MAAATEPIDIYDELKTEATGDILSTENDALYDDVVTGSVGSERPQETETTKDDNKPEVVYTYKGCTADK--SKRFSVYVGNFSWWTSDKDLVNVARTLGVKDVVDIKFAENRANGQSRGFAEIVVSSEESVKQLMDSIPHCQINGEKVECRYATRQNLAVFE 160 HSP 2 Score: 98.2117 bits (243), Expect = 1.667e-21 Identity = 44/77 (57.14%), Postives = 63/77 (81.82%), Query Frame = 1 Query: 1114 EFEDILQRNKTVSSSAINRAVQDASAGDYASAIETLVTAISLIKQSKIASDSRCKVLINSLQDTLTGIESKSYGSRK 1344 EFE+++ RN+T++SSAI +A+ A+ GD + AIETL+TAI++IKQS++ +D RC+ L+ SL+D L IESKSYGSRK Sbjct: 297 EFEELMNRNRTIASSAITKAMSGATTGDVSMAIETLLTAIAVIKQSRVYADDRCRALVESLKDCLYSIESKSYGSRK 373
BLAST of Cleavage and polyadenylation specificity factor subunit 6 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000008931.1 (pep scaffold:Pmarinus_7.0:GL479459:41812:46915:1 gene:ENSPMAG00000008077.1 transcript:ENSPMAT00000008931.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 118.627 bits (296), Expect = 3.207e-30 Identity = 53/89 (59.55%), Postives = 66/89 (74.16%), Query Frame = 1 Query: 253 RVATYVGNLRWWTTDQDLLDAVNKLDIKDVLEIKFHENRQNGQSKGFCVMVFGSDKSAKEAMEKLPKIEIHSLNPIVTYCNKQNLNYFE 519 RV YVGNL WWTTDQDL++A + + DVL IKF+ENR NGQSKGF ++ GSD +A++ M+ LPK EIH +PIVT CN Q L+ FE Sbjct: 79 RVPIYVGNLTWWTTDQDLIEAFQAVGVSDVLGIKFYENRANGQSKGFAIVNLGSDVAARKLMDLLPKHEIHGQDPIVTPCNHQTLSQFE 167
BLAST of Cleavage and polyadenylation specificity factor subunit 6 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000000721.1 (pep scaffold:Pmarinus_7.0:GL501311:459835:474664:-1 gene:ENSPMAG00000000657.1 transcript:ENSPMAT00000000721.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 121.709 bits (304), Expect = 1.717e-29 Identity = 58/75 (77.33%), Postives = 68/75 (90.67%), Query Frame = 1 Query: 1114 EFEDILQRNKTVSSSAINRAVQDASAGDYASAIETLVTAISLIKQSKIASDSRCKVLINSLQDTLTGIESKSYGS 1338 EFE+I+ RN+ +SSSAI+RAV DASAG+Y SAIETLVTAISLIKQSK++SD RCKVL++SLQD L GIESKSYGS Sbjct: 423 EFEEIMNRNRAISSSAISRAVSDASAGEYGSAIETLVTAISLIKQSKVSSDERCKVLVSSLQDCLHGIESKSYGS 497 HSP 2 Score: 119.783 bits (299), Expect = 9.141e-29 Identity = 61/153 (39.87%), Postives = 93/153 (60.78%), Query Frame = 1 Query: 61 FNEVIIYSDSLTKMADESEIDLYDNMEDNWKRESLDLYDDVESHSNSDNQRDVKSCSQNNYTGRRVATYVGNLRWWTTDQDLLDAVNKLDIKDVLEIKFHENRQNGQSKGFCVMVFGSDKSAKEAMEKLPKIEIHSLNPIVTYCNKQNLNYFE 519 +++VI+ + S + ADE + ++SL D+ H+ S + +Y G+RVA YVGNL WWTTD+DL++A+ + + D+ EIKF+ENR NGQSKGF ++ + S ++ M+ LPK E+H NPI+T CN+Q+LN E Sbjct: 14 YDDVIVPTASNGEEADERDF-----------QDSLAPLDEPGKHTTSTGGPSLNY----SYNGKRVALYVGNLTWWTTDEDLVNALQGIGVTDIQEIKFYENRANGQSKGFALVSVSLEASYRKVMDLLPKRELHGQNPIITPCNRQSLNQLE 151
BLAST of Cleavage and polyadenylation specificity factor subunit 6 vs. Ensembl Nematostella
Match: EDO36855 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SHB1]) HSP 1 Score: 103.99 bits (258), Expect = 1.315e-23 Identity = 46/90 (51.11%), Postives = 61/90 (67.78%), Query Frame = 1 Query: 250 RRVATYVGNLRWWTTDQDLLDAVNKLDIKDVLEIKFHENRQNGQSKGFCVMVFGSDKSAKEAMEKLPKIEIHSLNPIVTYCNKQNLNYFE 519 R YVGNL WWTTDQ L +A+ + + D++ IKF +NR NGQSKGF ++ GSDKS + E+LPK +I NP+VT KQ+L+ FE Sbjct: 100 RGKPLYVGNLTWWTTDQQLTEALQECGVTDLINIKFFDNRTNGQSKGFAMIELGSDKSIEMVTERLPKFDIEGQNPVVTPATKQHLHEFE 189 HSP 2 Score: 82.4185 bits (202), Expect = 1.271e-16 Identity = 38/71 (53.52%), Postives = 55/71 (77.46%), Query Frame = 1 Query: 1114 EFEDILQRNKTVSSSAINRAVQDASAGDYASAIETLVTAISLIKQSKIASDSRCKVLINSLQDTLTGIESK 1326 ++ + ++RN+ ++S+AI RA+ DA+AGDY S IETLVTA+SLIKQS A++ C VL+ SLQ L G+ES+ Sbjct: 374 DYAESMKRNQALASTAIKRAMSDANAGDYESGIETLVTAVSLIKQSVSANEESCLVLVQSLQSCLQGLESQ 444
BLAST of Cleavage and polyadenylation specificity factor subunit 6 vs. Ensembl Medaka
Match: cpsf6 (cleavage and polyadenylation specific factor 6 [Source:NCBI gene;Acc:101163450]) HSP 1 Score: 136.346 bits (342), Expect = 1.017e-33 Identity = 78/168 (46.43%), Postives = 102/168 (60.71%), Query Frame = 1 Query: 100 MADE-SEIDLYDNMEDNWKRES-------LDLYDDVESHS--NSDNQRDV---------------KSCSQN---NYTGRRVATYVGNLRWWTTDQDLLDAVNKLDIKDVLEIKFHENRQNGQSKGFCVMVFGSDKSAKEAMEKLPKIEIHSLNPIVTYCNKQNLNYFE 519 MAD ID+Y ++E+ + +ES +DLYDDV S S N D D KS N YTG+R+A Y+GNL WWTTD+DL +A+ + I DVLEIKF ENR NGQSKGF ++ GS+ S+++ M+ L K E+H NPIVT CNKQ+L+ FE Sbjct: 1 MADGVDHIDIYADVEEEFNQESEYPVHEQIDLYDDVISPSANNGDAPEDRDYMDSMPPSGGSDGGKSNPPNVVYTYTGKRIALYIGNLTWWTTDEDLTEAIRSVGITDVLEIKFFENRANGQSKGFALVCVGSEGSSRKLMDLLSKRELHGQNPIVTPCNKQSLSQFE 168 HSP 2 Score: 120.168 bits (300), Expect = 2.368e-28 Identity = 58/75 (77.33%), Postives = 67/75 (89.33%), Query Frame = 1 Query: 1114 EFEDILQRNKTVSSSAINRAVQDASAGDYASAIETLVTAISLIKQSKIASDSRCKVLINSLQDTLTGIESKSYGS 1338 EFE+I+ RN+ +SSSAI+RAV DASA DY SAIETLVTAISLIKQSK+++D RCKVLI+SLQD L GIESKSYGS Sbjct: 413 EFEEIMNRNRAISSSAISRAVSDASAADYGSAIETLVTAISLIKQSKVSADDRCKVLISSLQDCLHGIESKSYGS 487
BLAST of Cleavage and polyadenylation specificity factor subunit 6 vs. Ensembl Medaka
Match: CPSF7 (cleavage and polyadenylation specific factor 7 [Source:NCBI gene;Acc:101164290]) HSP 1 Score: 92.8189 bits (229), Expect = 1.185e-19 Identity = 39/90 (43.33%), Postives = 61/90 (67.78%), Query Frame = 1 Query: 250 RRVATYVGNLRWWTTDQDLLDAVNKLDIKDVLEIKFHENRQNGQSKGFCVMVFGSDKSAKEAMEKLPKIEIHSLNPIVTYCNKQNLNYFE 519 RR+A Y+GN WWT+D+DL+ KL +KDV EI+F EN+ NGQS+G+ +V +++S K+ +E++PK +I+ + +QNL FE Sbjct: 86 RRLAIYIGNFPWWTSDKDLMSMAQKLGVKDVTEIRFAENKINGQSRGYAELVVETEESLKKMLERIPKCKINGERIDCRFATRQNLVMFE 175 HSP 2 Score: 80.4925 bits (197), Expect = 1.214e-15 Identity = 36/78 (46.15%), Postives = 59/78 (75.64%), Query Frame = 1 Query: 1114 EFEDILQRNKTVSSSAINRAVQDASAGDYASAIETLVTAISLIKQSKIASDSRCKVLINSLQDTLTGIESKSYGSRKT 1347 +FE+++ RN+T++S+AI +AV A+AGD A+ETL+TAI++IKQS++ + RC+ L+ SL+D L I+ YG R++ Sbjct: 312 DFEELMNRNQTIASTAITKAVSGATAGDLQMAMETLLTAIAVIKQSRVYGNERCEALVTSLKDCLVSIQG-DYGYRRS 388
BLAST of Cleavage and polyadenylation specificity factor subunit 6 vs. Planmine SMEST
Match: SMESG000077480.1 (SMESG000077480.1) HSP 1 Score: 617.846 bits (1592), Expect = 0.000e+0 Identity = 490/490 (100.00%), Postives = 490/490 (100.00%), Query Frame = 1 Query: 100 MADESEIDLYDNMEDNWKRESLDLYDDVESHSNSDNQRDVKSCSQNNYTGRRVATYVGNLRWWTTDQDLLDAVNKLDIKDVLEIKFHENRQNGQSKGFCVMVFGSDKSAKEAMEKLPKIEIHSLNPIVTYCNKQNLNYFEQXXXXXXXXXXXXXXXXKPKSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFPGNMPISAIPGLGQNLLFNLSQYTQNTMNRAPNMLMQNPISTPLNVPTGQMNMSLAAQRXXXXXXXXXXXXXXXXXXXXXXXHLNPNFFNAAQTGGXXXXXXVTXXXXXXXXXXXXXXFDAFGRPIXXXXXXXXXXXXXXXXXEFEDILQRNKTVSSSAINRAVQDASAGDYASAIETLVTAISLIKQSKIASDSRCKVLINSLQDTLTGIESKSYGSRKTXXXXXXXXXXXXXXXXXXXXXYTXXXXXXXXXXXXXXXXXDYGRTNVQQXXXXXXXXXXXXXXXXXRYSNRYRH 1569 MADESEIDLYDNMEDNWKRESLDLYDDVESHSNSDNQRDVKSCSQNNYTGRRVATYVGNLRWWTTDQDLLDAVNKLDIKDVLEIKFHENRQNGQSKGFCVMVFGSDKSAKEAMEKLPKIEIHSLNPIVTYCNKQNLNYFEQAAGGSSANSTNNNNGNKPKSDMNRSNNSSNMSNNNCNNNNNQMQMGPMPNNMRFPGNMPISAIPGLGQNLLFNLSQYTQNTMNRAPNMLMQNPISTPLNVPTGQMNMSLAAQRLMQPGMMMQPGLPMTGTGTGPTPHLNPNFFNAAQTGGLLNNLNVTNPSLNQSSSNQNQQFDAFGRPISNSFSSSSAISPKLSDSEFEDILQRNKTVSSSAINRAVQDASAGDYASAIETLVTAISLIKQSKIASDSRCKVLINSLQDTLTGIESKSYGSRKTRNRRRSFSESSSECDRDDSNEYTSRRVLRSRSRDRHRRSRDYGRTNVQQTSGSDFFSGMGSSSSTDRYSNRYRH Sbjct: 1 MADESEIDLYDNMEDNWKRESLDLYDDVESHSNSDNQRDVKSCSQNNYTGRRVATYVGNLRWWTTDQDLLDAVNKLDIKDVLEIKFHENRQNGQSKGFCVMVFGSDKSAKEAMEKLPKIEIHSLNPIVTYCNKQNLNYFEQAAGGSSANSTNNNNGNKPKSDMNRSNNSSNMSNNNCNNNNNQMQMGPMPNNMRFPGNMPISAIPGLGQNLLFNLSQYTQNTMNRAPNMLMQNPISTPLNVPTGQMNMSLAAQRLMQPGMMMQPGLPMTGTGTGPTPHLNPNFFNAAQTGGLLNNLNVTNPSLNQSSSNQNQQFDAFGRPISNSFSSSSAISPKLSDSEFEDILQRNKTVSSSAINRAVQDASAGDYASAIETLVTAISLIKQSKIASDSRCKVLINSLQDTLTGIESKSYGSRKTRNRRRSFSESSSECDRDDSNEYTSRRVLRSRSRDRHRRSRDYGRTNVQQTSGSDFFSGMGSSSSTDRYSNRYRH 490 The following BLAST results are available for this feature:
BLAST of Cleavage and polyadenylation specificity factor subunit 6 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 5
BLAST of Cleavage and polyadenylation specificity factor subunit 6 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 5
BLAST of Cleavage and polyadenylation specificity factor subunit 6 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 2
BLAST of Cleavage and polyadenylation specificity factor subunit 6 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 5
BLAST of Cleavage and polyadenylation specificity factor subunit 6 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 4
BLAST of Cleavage and polyadenylation specificity factor subunit 6 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 5
BLAST of Cleavage and polyadenylation specificity factor subunit 6 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of Cleavage and polyadenylation specificity factor subunit 6 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of Cleavage and polyadenylation specificity factor subunit 6 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 4
BLAST of Cleavage and polyadenylation specificity factor subunit 6 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 2
BLAST of Cleavage and polyadenylation specificity factor subunit 6 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of Cleavage and polyadenylation specificity factor subunit 6 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 1
BLAST of Cleavage and polyadenylation specificity factor subunit 6 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 2
BLAST of Cleavage and polyadenylation specificity factor subunit 6 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 1
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30013733 ID=SMED30013733|Name=Cleavage and polyadenylation specificity factor subunit 6|organism=Schmidtea mediterranea sexual|type=transcript|length=1843bpback to top protein sequence of SMED30013733-orf-1 >SMED30013733-orf-1 ID=SMED30013733-orf-1|Name=SMED30013733-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=491bp MADESEIDLYDNMEDNWKRESLDLYDDVESHSNSDNQRDVKSCSQNNYTGback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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