SMED30013710

Overview
NameSMED30013710
Smed IDSMED30013710
Length (bp)659
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30013710 (SMED30013710) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30013710 (SMED30013710) in cells (dots) of each of the 12 neoblast clusters.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30013710

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 2

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30013710 SmedASXL_063001SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
X2 cellSMED30013710 SmedASXL_063001SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30013710 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.005212:1433..2123 +3142
v31.018720:10156..10832 +2879
v31.032336:280..958 -2805
v31.009257:10542..11220 -2805
v31.026914:126..804 -2787
v31.004698:6380..7059 +2748
v31.013526:5595..6267 +2578
v31.008762:10791..11463 +2578
Homology
[Close]
BLAST of SMED30013710 vs. Ensembl Human
Match: PSMD4 (proteasome 26S subunit, non-ATPase 4 [Source:HGNC Symbol;Acc:HGNC:9561])

HSP 1 Score: 81.2629 bits (199), Expect = 1.706e-31
Identity = 57/114 (50.00%), Postives = 81/114 (71.05%), Query Frame = -3 
Query:    7 HLKISIILHGQNRNQKSRIIIFLGSPIFEDESDXXXXXXXXXXXXXXVDVISFGEIEANQQKLSVFIDTINGQEDSSCHLVTIPVGSSIQVSLRTSLILMNE--EIVNVGAVGF 342
            HL +    H Q +N K RII F+GSP+ ++E DLVKLAK+LKKEKVNVD+I+FGE E N +KL+ F++T+NG++ +  HLVT+P G S+  +L +S IL  E   ++ +GA  F
Sbjct:   94 HLALK---HRQGKNHKMRIIAFVGSPVEDNEKDLVKLAKRLKKEKVNVDIINFGEEEVNTEKLTAFVNTLNGKDGTGSHLVTVPPGPSLADALISSPILAGEGGAMLGLGASDF 204

HSP 2 Score: 73.9442 bits (180), Expect = 1.706e-31
Identity = 36/88 (40.91%), Postives = 58/88 (65.91%), Query Frame = -2 
Query:  317 MSQEAIMIAVDNSDFIRNGDYSPSCFQAQVEAFNSFTNAKKRMNVENTCGLVTLS-EHQIVSTLTTDMSKLHSKITSVNPSENINYST 577
            M  E+ M+ VDNS+++RNGD+ P+  QAQ +A N   ++K R N EN  GL+TL+ + ++++TLT D  ++ SK+ +V P   I + T
Sbjct:    1 MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLANDCEVLTTLTPDTGRILSKLHTVQPKGKITFCT 88
[Close]
BLAST of SMED30013710 vs. Ensembl Human
Match: PSMD4 (proteasome 26S subunit, non-ATPase 4 [Source:HGNC Symbol;Acc:HGNC:9561])

HSP 1 Score: 81.2629 bits (199), Expect = 3.021e-27
Identity = 55/106 (51.89%), Postives = 78/106 (73.58%), Query Frame = -3 
Query:    7 HGQNRNQKSRIIIFLGSPIFEDESDXXXXXXXXXXXXXXVDVISFGEIEANQQKLSVFIDTINGQEDSSCHLVTIPVGSSIQVSLRTSLILMNE--EIVNVGAVGF 318
            H Q +N K RII F+GSP+ ++E DLVKLAK+LKKEKVNVD+I+FGE E N +KL+ F++T+NG++ +  HLVT+P G S+  +L +S IL  E   ++ +GA  F
Sbjct:   84 HRQGKNHKMRIIAFVGSPVEDNEKDLVKLAKRLKKEKVNVDIINFGEEEVNTEKLTAFVNTLNGKDGTGSHLVTVPPGPSLADALISSPILAGEGGAMLGLGASDF 189

HSP 2 Score: 59.6918 bits (143), Expect = 3.021e-27
Identity = 29/73 (39.73%), Postives = 47/73 (64.38%), Query Frame = -2 
Query:  317 IRNGDYSPSCFQAQVEAFNSFTNAKKRMNVENTCGLVTLS-EHQIVSTLTTDMSKLHSKITSVNPSENINYST 532
            +RNGD+ P+  QAQ +A N   ++K R N EN  GL+TL+ + ++++TLT D  ++ SK+ +V P   I + T
Sbjct:    1 MRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLANDCEVLTTLTPDTGRILSKLHTVQPKGKITFCT 73
[Close]
BLAST of SMED30013710 vs. Ensembl Human
Match: PSMD4 (proteasome 26S subunit, non-ATPase 4 [Source:HGNC Symbol;Acc:HGNC:9561])

HSP 1 Score: 80.8777 bits (198), Expect = 2.365e-17
Identity = 57/114 (50.00%), Postives = 81/114 (71.05%), Query Frame = -3 
Query:    7 HLKISIILHGQNRNQKSRIIIFLGSPIFEDESDXXXXXXXXXXXXXXVDVISFGEIEANQQKLSVFIDTINGQEDSSCHLVTIPVGSSIQVSLRTSLILMNE--EIVNVGAVGF 342
            HL +    H Q +N K RII F+GSP+ ++E DLVKLAK+LKKEKVNVD+I+FGE E N +KL+ F++T+NG++ +  HLVT+P G S+  +L +S IL  E   ++ +GA  F
Sbjct:   94 HLALK---HRQGKNHKMRIIAFVGSPVEDNEKDLVKLAKRLKKEKVNVDIINFGEEEVNTEKLTAFVNTLNGKDGTGSHLVTVPPGPSLADALISSPILAGEGGAMLGLGASDF 204

HSP 2 Score: 74.3294 bits (181), Expect = 5.520e-15
Identity = 36/91 (39.56%), Postives = 59/91 (64.84%), Query Frame = -2 
Query:  308 MSQEAIMIAVDNSDFIRNGDYSPSCFQAQVEAFNSFTNAKKRMNVENTCGLVTLS-EHQIVSTLTTDMSKLHSKITSVNPSENINYSTRTK 577
            M  E+ M+ VDNS+++RNGD+ P+  QAQ +A N   ++K R N EN  GL+TL+ + ++++TLT D  ++ SK+ +V P   I + T  +
Sbjct:    1 MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLANDCEVLTTLTPDTGRILSKLHTVQPKGKITFCTGIR 91
[Close]
BLAST of SMED30013710 vs. Ensembl Celegans
Match: rpn-10 (26S proteasome non-ATPase regulatory subunit 4 [Source:UniProtKB/Swiss-Prot;Acc:O61742])

HSP 1 Score: 69.707 bits (169), Expect = 6.774e-27
Identity = 34/86 (39.53%), Postives = 55/86 (63.95%), Query Frame = -2 
Query:  323 MSQEAIMIAVDNSDFIRNGDYSPSCFQAQVEAFNSFTNAKKRMNVENTCGLVTLSEH-QIVSTLTTDMSKLHSKITSVNPSENINY 577
            M QE+ MI VDNS+++RNGD+ P+  Q+Q +A N  T  K R N EN  G+++++   Q++S+L+T+  +L  K  S+ P    N+
Sbjct:    1 MVQESTMICVDNSEYMRNGDFQPTRLQSQQDAVNLVTQCKLRANPENAVGILSMANSVQVLSSLSTEQGRLMMKNHSIEPFGKCNF 86

HSP 2 Score: 68.9366 bits (167), Expect = 6.774e-27
Identity = 54/115 (46.96%), Postives = 76/115 (66.09%), Query Frame = -3 
Query:    4 HLKISIILHGQNRNQKSRIIIFLGSPIFEDE-SDXXXXXXXXXXXXXXVDVISFGEIEAN-QQKLSVFIDTINGQEDSSCHLVTIPVGSSIQVSLRTSLILMNEEIVNVGAVGFG 342
            HL +    H QNRN K R+++F+GSP+ E E ++LVK+AKK+KKEKV  DVI FGE E++  +K S F+DT+NG+E S   L+ +P GSS+  +L  S +  NE+    G   FG
Sbjct:   94 HLALK---HRQNRNHKMRVVLFIGSPLEEIEMNELVKIAKKMKKEKVLCDVIMFGENESDGHEKFSTFVDTLNGKEGSGSSLIVVPQGSSLTDALLQSSVCKNED----GQAAFG 201
[Close]
BLAST of SMED30013710 vs. Ensembl Celegans
Match: rpn-10 (26S proteasome non-ATPase regulatory subunit 4 [Source:UniProtKB/Swiss-Prot;Acc:O61742])

HSP 1 Score: 69.707 bits (169), Expect = 6.774e-27
Identity = 34/86 (39.53%), Postives = 55/86 (63.95%), Query Frame = -2 
Query:  323 MSQEAIMIAVDNSDFIRNGDYSPSCFQAQVEAFNSFTNAKKRMNVENTCGLVTLSEH-QIVSTLTTDMSKLHSKITSVNPSENINY 577
            M QE+ MI VDNS+++RNGD+ P+  Q+Q +A N  T  K R N EN  G+++++   Q++S+L+T+  +L  K  S+ P    N+
Sbjct:    1 MVQESTMICVDNSEYMRNGDFQPTRLQSQQDAVNLVTQCKLRANPENAVGILSMANSVQVLSSLSTEQGRLMMKNHSIEPFGKCNF 86

HSP 2 Score: 68.9366 bits (167), Expect = 6.774e-27
Identity = 54/115 (46.96%), Postives = 76/115 (66.09%), Query Frame = -3 
Query:    4 HLKISIILHGQNRNQKSRIIIFLGSPIFEDE-SDXXXXXXXXXXXXXXVDVISFGEIEAN-QQKLSVFIDTINGQEDSSCHLVTIPVGSSIQVSLRTSLILMNEEIVNVGAVGFG 342
            HL +    H QNRN K R+++F+GSP+ E E ++LVK+AKK+KKEKV  DVI FGE E++  +K S F+DT+NG+E S   L+ +P GSS+  +L  S +  NE+    G   FG
Sbjct:   94 HLALK---HRQNRNHKMRVVLFIGSPLEEIEMNELVKIAKKMKKEKVLCDVIMFGENESDGHEKFSTFVDTLNGKEGSGSSLIVVPQGSSLTDALLQSSVCKNED----GQAAFG 201
[Close]
BLAST of SMED30013710 vs. Ensembl Fly
Match: Rpn10 (gene:FBgn0015283 transcript:FBtr0078368)

HSP 1 Score: 72.7886 bits (177), Expect = 8.599e-15
Identity = 51/124 (41.13%), Postives = 81/124 (65.32%), Query Frame = -3 
Query:   34 KLFLL*QLICQNSIVKLLQSIHLKISIILHGQNRNQKSRIIIFLGSPIFEDESDXXXXXXXXXXXXXXVDVISFGEIEANQQKLSVFIDTINGQEDSSCHLVTIPVGSSIQVSLRTSLILMNEE 405
            ++F    L+     + LL  I +   ++ H Q +N K RI++F+GSPI  +E DLVK AK+LKKEKVNVD++SFG+   N + L+ FI+ +NG++ +  HLV++P GS +  +L +S I+  E+
Sbjct:   70 RIFSKMHLVQPKGEINLLTGIRIAHLVLKHRQGKNHKMRIVVFVGSPINHEEGDLVKQAKRLKKEKVNVDIVSFGDHGNNNEILTAFINALNGKDGTGSHLVSVPRGSVLSDALLSSPIIQGED 193

HSP 2 Score: 65.0846 bits (157), Expect = 3.772e-12
Identity = 38/88 (43.18%), Postives = 50/88 (56.82%), Query Frame = -2 
Query:  317 MSQEAIMIAVDNSDFIRNGDYSPSCFQAQVEAFNSFTNAKKRMNVENTCGLVTLSEH-QIVSTLTTDMSKLHSKITSVNPSENINYST 577
            M  E+ MI  DNSDF RNGDY P+    Q +  N     K R N EN  GL+TLS   ++++TLT+D  ++ SK+  V P   IN  T
Sbjct:    1 MVLESTMICFDNSDFQRNGDYFPTRLIVQRDGINLVCLTKLRSNPENNVGLMTLSNTVEVLATLTSDAGRIFSKMHLVQPKGEINLLT 88
[Close]
BLAST of SMED30013710 vs. Ensembl Fly
Match: Rpn10 (gene:FBgn0015283 transcript:FBtr0333453)

HSP 1 Score: 72.7886 bits (177), Expect = 8.599e-15
Identity = 51/124 (41.13%), Postives = 81/124 (65.32%), Query Frame = -3 
Query:   34 KLFLL*QLICQNSIVKLLQSIHLKISIILHGQNRNQKSRIIIFLGSPIFEDESDXXXXXXXXXXXXXXVDVISFGEIEANQQKLSVFIDTINGQEDSSCHLVTIPVGSSIQVSLRTSLILMNEE 405
            ++F    L+     + LL  I +   ++ H Q +N K RI++F+GSPI  +E DLVK AK+LKKEKVNVD++SFG+   N + L+ FI+ +NG++ +  HLV++P GS +  +L +S I+  E+
Sbjct:   70 RIFSKMHLVQPKGEINLLTGIRIAHLVLKHRQGKNHKMRIVVFVGSPINHEEGDLVKQAKRLKKEKVNVDIVSFGDHGNNNEILTAFINALNGKDGTGSHLVSVPRGSVLSDALLSSPIIQGED 193

HSP 2 Score: 65.0846 bits (157), Expect = 3.772e-12
Identity = 38/88 (43.18%), Postives = 50/88 (56.82%), Query Frame = -2 
Query:  317 MSQEAIMIAVDNSDFIRNGDYSPSCFQAQVEAFNSFTNAKKRMNVENTCGLVTLSEH-QIVSTLTTDMSKLHSKITSVNPSENINYST 577
            M  E+ MI  DNSDF RNGDY P+    Q +  N     K R N EN  GL+TLS   ++++TLT+D  ++ SK+  V P   IN  T
Sbjct:    1 MVLESTMICFDNSDFQRNGDYFPTRLIVQRDGINLVCLTKLRSNPENNVGLMTLSNTVEVLATLTSDAGRIFSKMHLVQPKGEINLLT 88
[Close]
BLAST of SMED30013710 vs. Ensembl Zebrafish
Match: psmd4b (proteasome 26S subunit, non-ATPase 4b [Source:ZFIN;Acc:ZDB-GENE-050417-96])

HSP 1 Score: 82.4185 bits (202), Expect = 1.522e-31
Identity = 55/106 (51.89%), Postives = 77/106 (72.64%), Query Frame = -3 
Query:    7 HGQNRNQKSRIIIFLGSPIFEDESDXXXXXXXXXXXXXXVDVISFGEIEANQQKLSVFIDTINGQEDSSCHLVTIPVGSSIQVSLRTSLILMNE--EIVNVGAVGF 318
            H Q +N K RII F+GSP+ + E DLVK+AK+LKKEKV+VD+I+FGE E N +KL+VF++T+NG+E    HLVT+P G S+  +L +S I+  E   I+ +GA  F
Sbjct:   99 HRQGKNHKMRIIAFVGSPVEDQEKDLVKMAKRLKKEKVSVDIINFGEEEVNTEKLTVFVNTLNGKEGVGSHLVTVPPGPSLADALLSSPIMAGEGGTIMGLGASDF 204

HSP 2 Score: 72.4034 bits (176), Expect = 1.522e-31
Identity = 35/88 (39.77%), Postives = 59/88 (67.05%), Query Frame = -2 
Query:  317 MSQEAIMIAVDNSDFIRNGDYSPSCFQAQVEAFNSFTNAKKRMNVENTCGLVTLSEH-QIVSTLTTDMSKLHSKITSVNPSENINYST 577
            M  E+ M+ VDNS+++RNGD+ P+  QAQ +A N   ++K R N EN  GL+T++ + ++++TLT D  ++ SK+ +V P   I++ T
Sbjct:    1 MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIICHSKTRSNPENNVGLITMANNCEVLTTLTPDTGRILSKLHAVQPRGVISFCT 88
[Close]
BLAST of SMED30013710 vs. Ensembl Zebrafish
Match: psmd4a (proteasome 26S subunit, non-ATPase 4a [Source:ZFIN;Acc:ZDB-GENE-040625-104])

HSP 1 Score: 83.1889 bits (204), Expect = 1.589e-27
Identity = 54/106 (50.94%), Postives = 78/106 (73.58%), Query Frame = -3 
Query:    7 HGQNRNQKSRIIIFLGSPIFEDESDXXXXXXXXXXXXXXVDVISFGEIEANQQKLSVFIDTINGQEDSSCHLVTIPVGSSIQVSLRTSLILMNE--EIVNVGAVGF 318
            H Q +N K RI+ F+GSP+ ++E DLVK+AK+LKKEKVNVD+I+FGE E N +KL+ F++T+NG+E +  HLVT+P G S+  +L +S IL  E   ++ +GA  F
Sbjct:   84 HRQGKNHKMRIVAFVGSPVEDNEKDLVKMAKRLKKEKVNVDIINFGEEEMNTEKLTAFVNTLNGKEGTGSHLVTVPPGPSLADALLSSPILAGEGGTMIGLGASDF 189

HSP 2 Score: 58.151 bits (139), Expect = 1.589e-27
Identity = 28/73 (38.36%), Postives = 48/73 (65.75%), Query Frame = -2 
Query:  317 IRNGDYSPSCFQAQVEAFNSFTNAKKRMNVENTCGLVTLSEH-QIVSTLTTDMSKLHSKITSVNPSENINYST 532
            +RNGD+ P+  QAQ +A N   ++K R N EN  GL+T++ + ++++TLT D  ++ SK+ +V P   I++ T
Sbjct:    1 MRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITMANNCEVLTTLTPDTGRILSKLHAVQPLGKISFCT 73
[Close]
BLAST of SMED30013710 vs. Ensembl Zebrafish
Match: psmd4a (proteasome 26S subunit, non-ATPase 4a [Source:ZFIN;Acc:ZDB-GENE-040625-104])

HSP 1 Score: 83.1889 bits (204), Expect = 2.379e-18
Identity = 56/114 (49.12%), Postives = 81/114 (71.05%), Query Frame = -3 
Query:    7 HLKISIILHGQNRNQKSRIIIFLGSPIFEDESDXXXXXXXXXXXXXXVDVISFGEIEANQQKLSVFIDTINGQEDSSCHLVTIPVGSSIQVSLRTSLILMNE--EIVNVGAVGF 342
            HL +    H Q +N K RI+ F+GSP+ ++E DLVK+AK+LKKEKVNVD+I+FGE E N +KL+ F++T+NG+E +  HLVT+P G S+  +L +S IL  E   ++ +GA  F
Sbjct:   94 HLALK---HRQGKNHKMRIVAFVGSPVEDNEKDLVKMAKRLKKEKVNVDIINFGEEEMNTEKLTAFVNTLNGKEGTGSHLVTVPPGPSLADALLSSPILAGEGGTMIGLGASDF 204

HSP 2 Score: 72.7886 bits (177), Expect = 1.153e-14
Identity = 35/91 (38.46%), Postives = 60/91 (65.93%), Query Frame = -2 
Query:  308 MSQEAIMIAVDNSDFIRNGDYSPSCFQAQVEAFNSFTNAKKRMNVENTCGLVTLSEH-QIVSTLTTDMSKLHSKITSVNPSENINYSTRTK 577
            M  E+ M+ VDNS+++RNGD+ P+  QAQ +A N   ++K R N EN  GL+T++ + ++++TLT D  ++ SK+ +V P   I++ T  +
Sbjct:    1 MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITMANNCEVLTTLTPDTGRILSKLHAVQPLGKISFCTGIR 91
[Close]
BLAST of SMED30013710 vs. Ensembl Zebrafish
Match: PSMD4 (proteasome 26S subunit, non-ATPase 4 [Source:HGNC Symbol;Acc:HGNC:9561])

HSP 1 Score: 73.1738 bits (178), Expect = 2.374e-16
Identity = 35/88 (39.77%), Postives = 59/88 (67.05%), Query Frame = -2 
Query:  317 MSQEAIMIAVDNSDFIRNGDYSPSCFQAQVEAFNSFTNAKKRMNVENTCGLVTLSEH-QIVSTLTTDMSKLHSKITSVNPSENINYST 577
            M  E+ M+ VDNS+++RNGD+ P+  QAQ +A N   ++K R N EN  GL+T++ + ++++TLT D  ++ SK+ +V P   I++ T
Sbjct:    1 MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITMANNCEVLTTLTPDTGRILSKLHAVQPLGKISFCT 88
[Close]
BLAST of SMED30013710 vs. Ensembl Mouse
Match: Psmd4 (proteasome (prosome, macropain) 26S subunit, non-ATPase, 4 [Source:MGI Symbol;Acc:MGI:1201670])

HSP 1 Score: 80.8777 bits (198), Expect = 1.205e-31
Identity = 57/114 (50.00%), Postives = 81/114 (71.05%), Query Frame = -3 
Query:    7 HLKISIILHGQNRNQKSRIIIFLGSPIFEDESDXXXXXXXXXXXXXXVDVISFGEIEANQQKLSVFIDTINGQEDSSCHLVTIPVGSSIQVSLRTSLILMNE--EIVNVGAVGF 342
            HL +    H Q +N K RII F+GSP+ ++E DLVKLAK+LKKEKVNVD+I+FGE E N +KL+ F++T+NG++ +  HLVT+P G S+  +L +S IL  E   ++ +GA  F
Sbjct:   94 HLALK---HRQGKNHKMRIIAFVGSPVEDNEKDLVKLAKRLKKEKVNVDIINFGEEEVNTEKLTAFVNTLNGKDGTGSHLVTVPPGPSLADALISSPILAGEGGAMLGLGASDF 204

HSP 2 Score: 74.3294 bits (181), Expect = 1.205e-31
Identity = 36/88 (40.91%), Postives = 58/88 (65.91%), Query Frame = -2 
Query:  317 MSQEAIMIAVDNSDFIRNGDYSPSCFQAQVEAFNSFTNAKKRMNVENTCGLVTLS-EHQIVSTLTTDMSKLHSKITSVNPSENINYST 577
            M  E+ M+ VDNS+++RNGD+ P+  QAQ +A N   ++K R N EN  GL+TL+ + ++++TLT D  ++ SK+ +V P   I + T
Sbjct:    1 MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLANDCEVLTTLTPDTGRILSKLHTVQPKGKITFCT 88
[Close]
BLAST of SMED30013710 vs. Ensembl Mouse
Match: Psmd4 (proteasome (prosome, macropain) 26S subunit, non-ATPase, 4 [Source:MGI Symbol;Acc:MGI:1201670])

HSP 1 Score: 80.8777 bits (198), Expect = 1.245e-31
Identity = 57/114 (50.00%), Postives = 81/114 (71.05%), Query Frame = -3 
Query:    7 HLKISIILHGQNRNQKSRIIIFLGSPIFEDESDXXXXXXXXXXXXXXVDVISFGEIEANQQKLSVFIDTINGQEDSSCHLVTIPVGSSIQVSLRTSLILMNE--EIVNVGAVGF 342
            HL +    H Q +N K RII F+GSP+ ++E DLVKLAK+LKKEKVNVD+I+FGE E N +KL+ F++T+NG++ +  HLVT+P G S+  +L +S IL  E   ++ +GA  F
Sbjct:   94 HLALK---HRQGKNHKMRIIAFVGSPVEDNEKDLVKLAKRLKKEKVNVDIINFGEEEVNTEKLTAFVNTLNGKDGTGSHLVTVPPGPSLADALISSPILAGEGGAMLGLGASDF 204

HSP 2 Score: 74.3294 bits (181), Expect = 1.245e-31
Identity = 36/88 (40.91%), Postives = 58/88 (65.91%), Query Frame = -2 
Query:  317 MSQEAIMIAVDNSDFIRNGDYSPSCFQAQVEAFNSFTNAKKRMNVENTCGLVTLS-EHQIVSTLTTDMSKLHSKITSVNPSENINYST 577
            M  E+ M+ VDNS+++RNGD+ P+  QAQ +A N   ++K R N EN  GL+TL+ + ++++TLT D  ++ SK+ +V P   I + T
Sbjct:    1 MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLANDCEVLTTLTPDTGRILSKLHTVQPKGKITFCT 88
[Close]
BLAST of SMED30013710 vs. Ensembl Mouse
Match: Psmd4 (proteasome (prosome, macropain) 26S subunit, non-ATPase, 4 [Source:MGI Symbol;Acc:MGI:1201670])

HSP 1 Score: 80.8777 bits (198), Expect = 1.297e-31
Identity = 57/114 (50.00%), Postives = 81/114 (71.05%), Query Frame = -3 
Query:    7 HLKISIILHGQNRNQKSRIIIFLGSPIFEDESDXXXXXXXXXXXXXXVDVISFGEIEANQQKLSVFIDTINGQEDSSCHLVTIPVGSSIQVSLRTSLILMNE--EIVNVGAVGF 342
            HL +    H Q +N K RII F+GSP+ ++E DLVKLAK+LKKEKVNVD+I+FGE E N +KL+ F++T+NG++ +  HLVT+P G S+  +L +S IL  E   ++ +GA  F
Sbjct:   94 HLALK---HRQGKNHKMRIIAFVGSPVEDNEKDLVKLAKRLKKEKVNVDIINFGEEEVNTEKLTAFVNTLNGKDGTGSHLVTVPPGPSLADALISSPILAGEGGAMLGLGASDF 204

HSP 2 Score: 74.3294 bits (181), Expect = 1.297e-31
Identity = 36/88 (40.91%), Postives = 58/88 (65.91%), Query Frame = -2 
Query:  317 MSQEAIMIAVDNSDFIRNGDYSPSCFQAQVEAFNSFTNAKKRMNVENTCGLVTLS-EHQIVSTLTTDMSKLHSKITSVNPSENINYST 577
            M  E+ M+ VDNS+++RNGD+ P+  QAQ +A N   ++K R N EN  GL+TL+ + ++++TLT D  ++ SK+ +V P   I + T
Sbjct:    1 MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLANDCEVLTTLTPDTGRILSKLHTVQPKGKITFCT 88
[Close]
BLAST of SMED30013710 vs. UniProt/SwissProt
Match: sp|O17453|PSMD4_SCHMA (26S proteasome non-ATPase regulatory subunit 4 OS=Schistosoma mansoni OX=6183 PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 7.706e-35
Identity = 55/116 (47.41%), Postives = 81/116 (69.83%), Query Frame = -3 
Query:    1 SIHLKISIILHGQNRNQKSRIIIFLGSPIFEDESDXXXXXXXXXXXXXXVDVISFGEIEANQQKLSVFIDTINGQEDSSCHLVTIPVGSSIQVSLRTSLILMNEEIVNVGAVGFGM 348
            SI +    + H Q R+QK RI+ F+GSPI EDE +L +LAK+LKKEKVNVD+I+FGE E N+QKLS FIDT+NG++ +  HL+++  G+ +  +L TS ++  E+   +   G G+
Sbjct:   88 SIRIAHLALRHRQLRHQKMRIVCFIGSPILEDEKELTRLAKRLKKEKVNVDIINFGENETNEQKLSEFIDTLNGKDGTGSHLISVAPGTVLHDTLMTSPVVAGEDGSGMAGAGLGL 203

HSP 2 Score: 82.0333 bits (201), Expect = 7.706e-35
Identity = 38/83 (45.78%), Postives = 59/83 (71.08%), Query Frame = -2 
Query:  329 MSQEAIMIAVDNSDFIRNGDYSPSCFQAQVEAFNSFTNAKKRMNVENTCGLVTLSEHQIVSTLTTDMSKLHSKITSVNPSENI 577
            MSQEA +IAVDNSD++RNGD+ P+  QAQ +A      +K++ N ENT GL++L+  +++ TLT D+SK+++++  V P   I
Sbjct:    1 MSQEATIIAVDNSDYMRNGDFFPTRLQAQNDAVGLICQSKRQRNPENTIGLLSLANTEVLCTLTNDVSKIYNRLHLVEPKGRI 83
[Close]
BLAST of SMED30013710 vs. UniProt/SwissProt
Match: sp|O35226|PSMD4_MOUSE (26S proteasome non-ATPase regulatory subunit 4 OS=Mus musculus OX=10090 GN=Psmd4 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.059e-31
Identity = 57/114 (50.00%), Postives = 81/114 (71.05%), Query Frame = -3 
Query:    7 HLKISIILHGQNRNQKSRIIIFLGSPIFEDESDXXXXXXXXXXXXXXVDVISFGEIEANQQKLSVFIDTINGQEDSSCHLVTIPVGSSIQVSLRTSLILMNE--EIVNVGAVGF 342
            HL +    H Q +N K RII F+GSP+ ++E DLVKLAK+LKKEKVNVD+I+FGE E N +KL+ F++T+NG++ +  HLVT+P G S+  +L +S IL  E   ++ +GA  F
Sbjct:   94 HLALK---HRQGKNHKMRIIAFVGSPVEDNEKDLVKLAKRLKKEKVNVDIINFGEEEVNTEKLTAFVNTLNGKDGTGSHLVTVPPGPSLADALISSPILAGEGGAMLGLGASDF 204

HSP 2 Score: 74.3294 bits (181), Expect = 7.059e-31
Identity = 36/88 (40.91%), Postives = 58/88 (65.91%), Query Frame = -2 
Query:  317 MSQEAIMIAVDNSDFIRNGDYSPSCFQAQVEAFNSFTNAKKRMNVENTCGLVTLS-EHQIVSTLTTDMSKLHSKITSVNPSENINYST 577
            M  E+ M+ VDNS+++RNGD+ P+  QAQ +A N   ++K R N EN  GL+TL+ + ++++TLT D  ++ SK+ +V P   I + T
Sbjct:    1 MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLANDCEVLTTLTPDTGRILSKLHTVQPKGKITFCT 88
[Close]
BLAST of SMED30013710 vs. UniProt/SwissProt
Match: sp|O61742|PSMD4_CAEEL (26S proteasome non-ATPase regulatory subunit 4 OS=Caenorhabditis elegans OX=6239 GN=rpn-10 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 6.474e-26
Identity = 34/86 (39.53%), Postives = 55/86 (63.95%), Query Frame = -2 
Query:  323 MSQEAIMIAVDNSDFIRNGDYSPSCFQAQVEAFNSFTNAKKRMNVENTCGLVTLSEH-QIVSTLTTDMSKLHSKITSVNPSENINY 577
            M QE+ MI VDNS+++RNGD+ P+  Q+Q +A N  T  K R N EN  G+++++   Q++S+L+T+  +L  K  S+ P    N+
Sbjct:    1 MVQESTMICVDNSEYMRNGDFQPTRLQSQQDAVNLVTQCKLRANPENAVGILSMANSVQVLSSLSTEQGRLMMKNHSIEPFGKCNF 86

HSP 2 Score: 68.9366 bits (167), Expect = 6.474e-26
Identity = 54/115 (46.96%), Postives = 76/115 (66.09%), Query Frame = -3 
Query:    4 HLKISIILHGQNRNQKSRIIIFLGSPIFEDE-SDXXXXXXXXXXXXXXVDVISFGEIEAN-QQKLSVFIDTINGQEDSSCHLVTIPVGSSIQVSLRTSLILMNEEIVNVGAVGFG 342
            HL +    H QNRN K R+++F+GSP+ E E ++LVK+AKK+KKEKV  DVI FGE E++  +K S F+DT+NG+E S   L+ +P GSS+  +L  S +  NE+    G   FG
Sbjct:   94 HLALK---HRQNRNHKMRVVLFIGSPLEEIEMNELVKIAKKMKKEKVLCDVIMFGENESDGHEKFSTFVDTLNGKEGSGSSLIVVPQGSSLTDALLQSSVCKNED----GQAAFG 201
[Close]
BLAST of SMED30013710 vs. UniProt/SwissProt
Match: sp|O94444|RPN10_SCHPO (26S proteasome regulatory subunit rpn10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpn10 PE=1 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 4.000e-20
Identity = 33/76 (43.42%), Postives = 48/76 (63.16%), Query Frame = -2 
Query:  356 MSQEAIMIAVDNSDFIRNGDYSPSCFQAQVEAFNSFTNAKKRMNVENTCGLVTLSEH--QIVSTLTTDMSKLHSKI 577
            M  EA MI +DNS+++ NGDY P+ F+AQ +  +   N K   N EN CGL+T+ ++  Q++STLT D  K  S +
Sbjct:    1 MVLEATMILIDNSEWMINGDYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSPQVLSTLTRDYGKFLSAM 76

HSP 2 Score: 56.9954 bits (136), Expect = 4.000e-20
Identity = 37/76 (48.68%), Postives = 54/76 (71.05%), Query Frame = -3 
Query:   91 HGQNRNQKSRIIIFLGSPIFEDESDXXXXXXXXXXXXXXVDVISFGEIEANQQKLSVFIDTINGQEDSSCHLVTIP 318
            H +N+ Q+ RI+ F+GSPI EDE +L++LAK++KK  V +D+I  GE++ N+  L  FID  N  +  SCHLV+IP
Sbjct:  100 HRENKIQRQRIVAFVGSPIVEDEKNLIRLAKRMKKNNVAIDIIHIGELQ-NESALQHFIDAANSSD--SCHLVSIP 172
[Close]
BLAST of SMED30013710 vs. UniProt/SwissProt
Match: sp|O82143|PSMDA_ORYSJ (26S proteasome non-ATPase regulatory subunit 4 homolog OS=Oryza sativa subsp. japonica OX=39947 GN=RPN10 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.548e-20
Identity = 33/69 (47.83%), Postives = 49/69 (71.01%), Query Frame = -2 
Query:  368 EAIMIAVDNSDFIRNGDYSPSCFQAQVEAFNSFTNAKKRMNVENTCGLVTLSEH--QIVSTLTTDMSKL 568
            EA MI +DNS+++RNGDYSPS FQAQ +A N    AK + N ENT G++T++    +++ T T+D+ K+
Sbjct:    4 EATMICIDNSEWMRNGDYSPSRFQAQADAVNLICGAKTQSNPENTVGVMTMAGKGVRVLVTPTSDLGKI 72

HSP 2 Score: 47.3654 bits (111), Expect = 8.548e-20
Identity = 34/92 (36.96%), Postives = 54/92 (58.70%), Query Frame = -3 
Query:   85 LLQSIHLKISIILHGQNRNQKSRIIIFLGSPIFEDESDXXXXXXXXXXXXXXVDVISFGEIEANQ-QKLSVFIDTINGQEDSSCHLVTIPVG 357
            L  +I +    + H QN+ Q+ RII F+GSP+  D+  L  + KKLKK  V +D++ FGE + ++ +KL   I  +N  +  S H+V +P G
Sbjct:   87 LAAAIQVAQLALKHRQNKRQQQRIIAFIGSPVKYDKKVLETIGKKLKKNNVALDIVDFGETDDDKPEKLEALISAVNSSD--SSHIVHVPPG 176
[Close]
BLAST of SMED30013710 vs. TrEMBL
Match: A0A183SB98 (VWFA domain-containing protein OS=Schistocephalus solidus OX=70667 GN=SSLN_LOCUS1496 PE=4 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.069e-35
Identity = 40/90 (44.44%), Postives = 66/90 (73.33%), Query Frame = -2 
Query:  308 MSQEAIMIAVDNSDFIRNGDYSPSCFQAQVEAFNSFTNAKKRMNVENTCGLVTLSEHQIVSTLTTDMSKLHSKITSVNPSENINYSTRTK 577
            MSQEA+MIAVDNSDF+RNGD++P+  QAQ +A +     K++ N ENT GL++L+  +++ TLT+DMS++++++  + P   I++ T  +
Sbjct:    1 MSQEAVMIAVDNSDFMRNGDFAPTRLQAQNDAVSLLCQVKRQANPENTVGLISLANTEVLCTLTSDMSRIYNRLHLIQPKGGISFCTSVR 90

HSP 2 Score: 82.0333 bits (201), Expect = 6.069e-35
Identity = 52/97 (53.61%), Postives = 74/97 (76.29%), Query Frame = -3 
Query:   34 ILHGQNRNQKSRIIIFLGSPIFEDESDXXXXXXXXXXXXXXVDVISFGEIEANQQKLSVFIDTINGQEDSSCHLVTIPVGSSIQVSLRTSLILMNEE 324
            + H Q R+QK RI+ F+GSPI +DE D++KLAK+LKKEKVN+D+++FGE E NQ+KL  FID +NG++ +  HLVT+P G+ +  SL TS I+  E+
Sbjct:   96 LRHRQLRHQKMRIVCFIGSPIEDDEKDMIKLAKRLKKEKVNIDIVNFGEDEVNQKKLLEFIDMVNGKDGTGSHLVTVPPGTVLHESLVTSPIIAGED 192
[Close]
BLAST of SMED30013710 vs. TrEMBL
Match: A0A0X3P301 (26S proteasome non-ATPase regulatory subunit 4 OS=Schistocephalus solidus OX=70667 GN=PSMD4 PE=4 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.335e-34
Identity = 40/90 (44.44%), Postives = 66/90 (73.33%), Query Frame = -2 
Query:  308 MSQEAIMIAVDNSDFIRNGDYSPSCFQAQVEAFNSFTNAKKRMNVENTCGLVTLSEHQIVSTLTTDMSKLHSKITSVNPSENINYSTRTK 577
            MSQEA+MIAVDNSDF+RNGD++P+  QAQ +A +     K++ N ENT GL++L+  +++ TLT+DMS++++++  + P   I++ T  +
Sbjct:    1 MSQEAVMIAVDNSDFMRNGDFAPTRLQAQNDAVSLLCQVKRQANPENTVGLISLANTEVLCTLTSDMSRIYNRLHLIQPKGGISFCTSVR 90

HSP 2 Score: 81.2629 bits (199), Expect = 1.335e-34
Identity = 52/97 (53.61%), Postives = 74/97 (76.29%), Query Frame = -3 
Query:   34 ILHGQNRNQKSRIIIFLGSPIFEDESDXXXXXXXXXXXXXXVDVISFGEIEANQQKLSVFIDTINGQEDSSCHLVTIPVGSSIQVSLRTSLILMNEE 324
            + H Q R+QK RI+ F+GSPI +DE D++KLAK+LKKEKVN+D+++FGE E NQ+KL  FID +NG++ +  HLVT+P G+ +  SL TS I+  E+
Sbjct:   96 LRHRQLRHQKMRIVCFIGSPIEDDEKDMIKLAKRLKKEKVNIDIVNFGEDEVNQKKLLEFIDMVNGKDGTGSHLVTVPPGTVLHESLVTSPIIAGED 192
[Close]
BLAST of SMED30013710 vs. TrEMBL
Match: A0A183R2Q2 (VWFA domain-containing protein OS=Schistosoma rodhaini OX=6188 PE=4 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.234e-32
Identity = 55/116 (47.41%), Postives = 81/116 (69.83%), Query Frame = -3 
Query:    1 SIHLKISIILHGQNRNQKSRIIIFLGSPIFEDESDXXXXXXXXXXXXXXVDVISFGEIEANQQKLSVFIDTINGQEDSSCHLVTIPVGSSIQVSLRTSLILMNEEIVNVGAVGFGM 348
            SI +    + H Q R+QK RI+ F+GSPI EDE +L +LAK+LKKEKVNVD+I+FGE E N+QKLS FIDT+NG++ +  HL+++  G+ +  +L TS ++  E+   +   G G+
Sbjct:   88 SIRIAHLALRHRQLRHQKMRIVCFIGSPILEDEKELTRLAKRLKKEKVNVDIINFGENETNEQKLSEFIDTLNGKDGTGSHLISVAPGTVLHDTLMTSPVVAGEDGSGMAGAGLGL 203

HSP 2 Score: 82.0333 bits (201), Expect = 1.234e-32
Identity = 38/83 (45.78%), Postives = 59/83 (71.08%), Query Frame = -2 
Query:  329 MSQEAIMIAVDNSDFIRNGDYSPSCFQAQVEAFNSFTNAKKRMNVENTCGLVTLSEHQIVSTLTTDMSKLHSKITSVNPSENI 577
            MSQEA +IAVDNSD++RNGD+ P+  QAQ +A      +K++ N ENT GL++L+  +++ TLT D+SK+++++  V P   I
Sbjct:    1 MSQEATIIAVDNSDYMRNGDFFPTRLQAQNDAVGLICQSKRQRNPENTIGLLSLANTEVLCTLTNDVSKIYNRLHLVEPKGRI 83
[Close]
BLAST of SMED30013710 vs. TrEMBL
Match: Q547D2 (Multiubiquitin binding protein S5a OS=Schistosoma mansoni OX=6183 GN=S5a PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.234e-32
Identity = 55/116 (47.41%), Postives = 81/116 (69.83%), Query Frame = -3 
Query:    1 SIHLKISIILHGQNRNQKSRIIIFLGSPIFEDESDXXXXXXXXXXXXXXVDVISFGEIEANQQKLSVFIDTINGQEDSSCHLVTIPVGSSIQVSLRTSLILMNEEIVNVGAVGFGM 348
            SI +    + H Q R+QK RI+ F+GSPI EDE +L +LAK+LKKEKVNVD+I+FGE E N+QKLS FIDT+NG++ +  HL+++  G+ +  +L TS ++  E+   +   G G+
Sbjct:   88 SIRIAHLALRHRQLRHQKMRIVCFIGSPILEDEKELTRLAKRLKKEKVNVDIINFGENETNEQKLSEFIDTLNGKDGTGSHLISVAPGTVLHDTLMTSPVVAGEDGSGMAGAGLGL 203

HSP 2 Score: 82.0333 bits (201), Expect = 1.234e-32
Identity = 38/83 (45.78%), Postives = 59/83 (71.08%), Query Frame = -2 
Query:  329 MSQEAIMIAVDNSDFIRNGDYSPSCFQAQVEAFNSFTNAKKRMNVENTCGLVTLSEHQIVSTLTTDMSKLHSKITSVNPSENI 577
            MSQEA +IAVDNSD++RNGD+ P+  QAQ +A      +K++ N ENT GL++L+  +++ TLT D+SK+++++  V P   I
Sbjct:    1 MSQEATIIAVDNSDYMRNGDFFPTRLQAQNDAVGLICQSKRQRNPENTIGLLSLANTEVLCTLTNDVSKIYNRLHLVEPKGRI 83
[Close]
BLAST of SMED30013710 vs. TrEMBL
Match: A0A1A7Z0R5 (Proteasome (Prosome, macropain) 26S subunit, non-ATPase, 4a (Fragment) OS=Iconisemion striatum OX=60296 GN=PSMD4A PE=4 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.600e-30
Identity = 59/114 (51.75%), Postives = 82/114 (71.93%), Query Frame = -3 
Query:    7 HLKISIILHGQNRNQKSRIIIFLGSPIFEDESDXXXXXXXXXXXXXXVDVISFGEIEANQQKLSVFIDTINGQEDSSCHLVTIPVGSSIQVSLRTSLILMNE--EIVNVGAVGF 342
            HL +    H Q +N K RII F+GSP+ ++E DLVK+AK+LKKEKVNVD+I+FGE EAN +KL+ FI+T+NG+E +  HLVT+P G S+  +L +S IL  E   ++ +GA  F
Sbjct:  106 HLALK---HRQGKNHKMRIIAFVGSPVEDNEKDLVKMAKRLKKEKVNVDIINFGEEEANTEKLTAFINTLNGKEGTGSHLVTVPPGPSLADALLSSPILAGEGGSMIGLGASDF 216

HSP 2 Score: 74.7146 bits (182), Expect = 1.600e-30
Identity = 35/82 (42.68%), Postives = 57/82 (69.51%), Query Frame = -2 
Query:  341 SKMSQEAIMIAVDNSDFIRNGDYSPSCFQAQVEAFNSFTNAKKRMNVENTCGLVTLSEH-QIVSTLTTDMSKLHSKITSVNP 583
            SKM  E+ M+ VDNS+++RNGD+ P+  QAQ +A N   ++K R N EN  GL+T++ + ++++TLT D  ++ SK+ +V P
Sbjct:   11 SKMVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITMANNCEVLTTLTPDSGRIQSKLHAVQP 92
[Close]
BLAST of SMED30013710 vs. Ensembl Cavefish
Match: psmd4a (proteasome 26S subunit, non-ATPase 4 [Source:NCBI gene;Acc:103039450])

HSP 1 Score: 83.5741 bits (205), Expect = 2.636e-32
Identity = 59/114 (51.75%), Postives = 81/114 (71.05%), Query Frame = -3 
Query:    7 HLKISIILHGQNRNQKSRIIIFLGSPIFEDESDXXXXXXXXXXXXXXVDVISFGEIEANQQKLSVFIDTINGQEDSSCHLVTIPVGSSIQVSLRTSLILMNE--EIVNVGAVGF 342
            HL +    H Q +N K RII F+GSP+ ++E DLVKLAK+LKKEKVNVDVI+FGE E N +KL+ F++T+NG+E +  HLVT+P G S+  +L +S IL  E   ++ +GA  F
Sbjct:   94 HLALK---HRQGKNHKMRIIAFVGSPVEDNEKDLVKLAKRLKKEKVNVDVINFGEEEVNTEKLTAFVNTLNGKEGTGSHLVTVPPGPSLADALLSSPILAGEGGTMMGLGASDF 204

HSP 2 Score: 73.559 bits (179), Expect = 2.636e-32
Identity = 35/88 (39.77%), Postives = 59/88 (67.05%), Query Frame = -2 
Query:  317 MSQEAIMIAVDNSDFIRNGDYSPSCFQAQVEAFNSFTNAKKRMNVENTCGLVTLSEH-QIVSTLTTDMSKLHSKITSVNPSENINYST 577
            M  E+ M+ VDNS+++RNGD+ P+  QAQ +A N   ++K R N EN  GL+T++ + ++++TLT D  ++ SK+ +V P   I++ T
Sbjct:    1 MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITMANNCEVLTTLTPDTGRILSKLHAVQPRGRISFCT 88
[Close]
BLAST of SMED30013710 vs. Ensembl Sea Lamprey
Match: psmd4a (proteasome 26S subunit, non-ATPase 4a [Source:ZFIN;Acc:ZDB-GENE-040625-104])

HSP 1 Score: 86.6557 bits (213), Expect = 2.674e-20
Identity = 59/114 (51.75%), Postives = 82/114 (71.93%), Query Frame = -3 
Query:    1 HLKISIILHGQNRNQKSRIIIFLGSPIFEDESDXXXXXXXXXXXXXXVDVISFGEIEANQQKLSVFIDTINGQEDSSCHLVTIPVGSSIQVSLRTSLILMNEEIVNVGAVGFGM 342
            HL +    H Q +N K RI++F+GSPI  DE +L+KLAK+LKKEKVNVD+I+FGE  +N +KL+ F++T+NG+E +  HLVT+P GSS+  +L +S IL  E     G VGFG+
Sbjct:  105 HLALK---HRQGKNHKMRIVVFIGSPILNDEKELLKLAKRLKKEKVNVDIINFGEEGSNTEKLTAFVNTLNGKEGTGSHLVTVPPGSSLADALLSSPILAGE-----GGVGFGL 210

HSP 2 Score: 63.5438 bits (153), Expect = 2.912e-12
Identity = 34/94 (36.17%), Postives = 58/94 (61.70%), Query Frame = -2 
Query:  308 SSKMSQEAIMIAVDNSDFIRNGDYSPSCFQAQVEAFNSFTNAKKRMN-VENTCGLVTLSEHQIVSTLTTDMSKLHSKITSVNPSENINYSTRTK 586
            ++ M  E+ M+ VDNS+++RNGD+ P+  QAQ +A N   ++K R   + N   + T    ++++TLT+D  K+ SK+ SV P  +IN+ T  +
Sbjct:    9 AAAMGLESTMVCVDNSEYMRNGDFVPTRLQAQQDAVNIVCHSKTRSEYMRNGDFVPTRLNCEVLTTLTSDTGKILSKLHSVQPKGDINFCTGIR 102
[Close]
BLAST of SMED30013710 vs. Ensembl Yeast
Match: RPN10 (Non-ATPase base subunit of the 19S RP of the 26S proteasome; N-terminus plays a role in maintaining the structural integrity of the regulatory particle (RP); binds selectively to polyubiquitin chains; homolog of the mammalian S5a protein [Source:SGD;Acc:S000001243])

HSP 1 Score: 53.9138 bits (128), Expect = 8.487e-18
Identity = 39/97 (40.21%), Postives = 60/97 (61.86%), Query Frame = -3 
Query:   76 KLLQSIHLKIS--IILHGQNRNQKSRIIIFLGSPIFEDESDXXXXXXXXXXXXXXVDVISFGEIEANQQKLSVFIDTINGQEDSSCHLVTIPVGSSI 360
            KL  +  L+I+   + H QN+ Q  RI+ F+ SPI +   +L++LAK LKK  V VD+I+FGEIE N + L  FI  +N  ++ + HL+T+  G  +
Sbjct:   84 KLHMATALQIAQLTLKHRQNKVQHQRIVAFVCSPISDSRDELIRLAKTLKKNNVAVDIINFGEIEQNTELLDEFIAAVNNPQEETSHLLTVTPGPRL 180

HSP 2 Score: 51.6026 bits (122), Expect = 8.487e-18
Identity = 25/72 (34.72%), Postives = 45/72 (62.50%), Query Frame = -2 
Query:  368 MSQEAIMIAVDNSDFIRNGDYSPSCFQAQVEAFNSFTNAKKRMNVENTCGLVT--LSEHQIVSTLTTDMSKL 577
            M  EA ++ +DNS++ RNGD+  + F+AQ+++      AK+  N ENT GL++   +  +++ST T +  K+
Sbjct:    1 MVLEATVLVIDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPRVLSTFTAEFGKI 72
[Close]
BLAST of SMED30013710 vs. Ensembl Nematostella
Match: EDO31082 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SYY2])

HSP 1 Score: 75.8702 bits (185), Expect = 3.477e-16
Identity = 55/120 (45.83%), Postives = 83/120 (69.17%), Query Frame = -3 
Query:    4 VKLLQSIHLKISIILHGQNRNQKSRIIIFLGSPIFEDESDXXXXXXXXXXXXXXVDVISFGEIEANQQKLSVFIDTINGQEDSSCHLVTIPVGSSIQVSLRTSLILMNEEIVNVGAVGFG 363
            V  L ++     ++ H Q +N K RI++F+GSPI  DE ++VKLAKKLKKEKVNVDV++FGE E+N +KL+ FI+ +NG++ +  HLVT+P G  +  +L +S I++ E+    GA+  G
Sbjct:   83 VNFLTAVKKAHLVLKHRQGKNHKMRIVVFVGSPIESDEKEIVKLAKKLKKEKVNVDVVNFGEEESNTEKLTAFINILNGKDGNLSHLVTVPPGPILSNALVSSAIVVGED--GAGAMDMG 200

HSP 2 Score: 75.485 bits (184), Expect = 4.690e-16
Identity = 36/91 (39.56%), Postives = 59/91 (64.84%), Query Frame = -2 
Query:  305 MSQEAIMIAVDNSDFIRNGDYSPSCFQAQVEAFNSFTNAKKRMNVENTCGLVTLSEHQIVSTLTTDMSKLHSKITSVNPSENINYSTRTKQ 577
            M  E+ ++ VDNS+F+RNGD+ P+  QAQ +A +   ++K R N EN  GL+T +  +++ TLTTD+ KL + +  V P  ++N+ T  K+
Sbjct:    1 MVLESTILCVDNSEFMRNGDFLPTRIQAQQDAVSLICHSKTRQNPENNVGLMTTASLEVLVTLTTDVGKLLTTLHKVQPQGDVNFLTAVKK 91
[Close]
BLAST of SMED30013710 vs. Ensembl Medaka
Match: psmd4b (26S proteasome non-ATPase regulatory subunit 4 [Source:NCBI gene;Acc:101173089])

HSP 1 Score: 78.1814 bits (191), Expect = 1.542e-31
Identity = 56/114 (49.12%), Postives = 80/114 (70.18%), Query Frame = -3 
Query:    7 HLKISIILHGQNRNQKSRIIIFLGSPIFEDESDXXXXXXXXXXXXXXVDVISFGEIEANQQKLSVFIDTINGQEDSSCHLVTIPVGSSIQVSLRTSLILMNE--EIVNVGAVGF 342
            HL +    H Q +N K RII F+GSP+ + + +LVK+AK+LKKEKVNVD+I+FGE E N +KL+ FI+T+NG+E +  HLVT+P G S+  +L +S IL  E   ++ +GA  F
Sbjct:   94 HLALK---HRQGKNHKMRIIAFVGSPVEDTDKELVKMAKRLKKEKVNVDIINFGEEEMNTEKLTGFINTLNGKEGTGSHLVTVPPGPSLADALLSSPILAGEGGAVLGLGASDF 204

HSP 2 Score: 76.6406 bits (187), Expect = 1.542e-31
Identity = 37/88 (42.05%), Postives = 60/88 (68.18%), Query Frame = -2 
Query:  317 MSQEAIMIAVDNSDFIRNGDYSPSCFQAQVEAFNSFTNAKKRMNVENTCGLVTLSEH-QIVSTLTTDMSKLHSKITSVNPSENINYST 577
            M  E+ M+ VDNS+++RNGD+ P+  QAQ +A N   ++K R N EN  GL+TL+ + ++++TLT D  ++ SK+ +V P  NI++ T
Sbjct:    1 MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLANNCEVLTTLTPDTGRILSKLHAVQPRGNISFCT 88
[Close]
BLAST of SMED30013710 vs. Ensembl Medaka
Match: psmd4a (26S proteasome non-ATPase regulatory subunit 4 [Source:NCBI gene;Acc:101157953])

HSP 1 Score: 83.9593 bits (206), Expect = 9.735e-19
Identity = 59/114 (51.75%), Postives = 81/114 (71.05%), Query Frame = -3 
Query:    7 HLKISIILHGQNRNQKSRIIIFLGSPIFEDESDXXXXXXXXXXXXXXVDVISFGEIEANQQKLSVFIDTINGQEDSSCHLVTIPVGSSIQVSLRTSLILMNE--EIVNVGAVGF 342
            HL +    H Q +N K RII F+GSP+ ++E DLVKLAK+LKKEKVNVD+I+FGE E N +KL+ FI+T+NG+E +  HLVT+P G S+  +L +S IL  E   ++ +GA  F
Sbjct:   94 HLALK---HRQGKNHKMRIIAFVGSPVEDNEKDLVKLAKRLKKEKVNVDIINFGEEEVNTEKLTAFINTLNGKEGTGSHLVTVPPGPSLADALLSSPILAGEGGSMIGLGASDF 204

HSP 2 Score: 73.1738 bits (178), Expect = 5.758e-15
Identity = 36/91 (39.56%), Postives = 60/91 (65.93%), Query Frame = -2 
Query:  308 MSQEAIMIAVDNSDFIRNGDYSPSCFQAQVEAFNSFTNAKKRMNVENTCGLVTLSEH-QIVSTLTTDMSKLHSKITSVNPSENINYSTRTK 577
            M  E+ M+ VDNS+++RNGD+ P+  QAQ +A N   ++K R N EN  GL+T++ + ++++TLT D  ++ SK+ +V P  NI + T  +
Sbjct:    1 MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLMTMANNCEVLTTLTPDSGRILSKLHAVQPKGNICFCTGIR 91
[Close]
BLAST of SMED30013710 vs. Planmine SMEST
Match: SMESG000004761.1 (SMESG000004761.1)

HSP 1 Score: 167.162 bits (422), Expect = 1.107e-50
Identity = 81/90 (90.00%), Postives = 85/90 (94.44%), Query Frame = -2 
Query:  308 MSQEAIMIAVDNSDFIRNGDYSPSCFQAQVEAFNSFTNAKKRMNVENTCGLVTLSEHQIVSTLTTDMSKLHSKITSVNPSENINYSTRTK 577
            MSQEAIMIAVDNSDF+RNGDYSPS FQAQVEAFNSFTNAKKRMNVENTCGLVTLS+HQIVSTLTTDMSKLHSKITSVN S NIN+ST  +
Sbjct:    1 MSQEAIMIAVDNSDFMRNGDYSPSRFQAQVEAFNSFTNAKKRMNVENTCGLVTLSDHQIVSTLTTDMSKLHSKITSVNLSGNINFSTTVR 90

HSP 2 Score: 163.696 bits (413), Expect = 2.202e-49
Identity = 98/116 (84.48%), Postives = 104/116 (89.66%), Query Frame = -3 
Query:    1 SIHLKISIILHGQNRNQKSRIIIFLGSPIFEDESDXXXXXXXXXXXXXXVDVISFGEIEANQQKLSVFIDTINGQEDSSCHLVTIPVGSSIQVSLRTSLILMNEEIVNVGAVGFGM 348
            ++ + +  + H QNRNQK RIIIFLGSPIFEDESDLVKLAKKLKKEKVNVDVISFGEIEANQQKLSVFIDTINGQ+DSSCHLVTIP GSSIQ SLR S ILMNEEI NVGAVGFGM
Sbjct:   88 TVRVSLLALRHRQNRNQKPRIIIFLGSPIFEDESDLVKLAKKLKKEKVNVDVISFGEIEANQQKLSVFIDTINGQKDSSCHLVTIPAGSSIQESLRKSPILMNEEIGNVGAVGFGM 203
[Close]
BLAST of SMED30013710 vs. Planmine SMEST
Match: SMESG000004762.1 (SMESG000004762.1)

HSP 1 Score: 167.162 bits (422), Expect = 1.143e-50
Identity = 81/90 (90.00%), Postives = 85/90 (94.44%), Query Frame = -2 
Query:  308 MSQEAIMIAVDNSDFIRNGDYSPSCFQAQVEAFNSFTNAKKRMNVENTCGLVTLSEHQIVSTLTTDMSKLHSKITSVNPSENINYSTRTK 577
            MSQEAIMIAVDNSDF+RNGDYSPS FQAQVEAFNSFTNAKKRMNVENTCGLVTLS+HQIVSTLTTDMSKLHSKITSVN S NIN+ST  +
Sbjct:    1 MSQEAIMIAVDNSDFMRNGDYSPSRFQAQVEAFNSFTNAKKRMNVENTCGLVTLSDHQIVSTLTTDMSKLHSKITSVNLSGNINFSTTVR 90

HSP 2 Score: 165.236 bits (417), Expect = 4.939e-50
Identity = 99/116 (85.34%), Postives = 104/116 (89.66%), Query Frame = -3 
Query:    1 SIHLKISIILHGQNRNQKSRIIIFLGSPIFEDESDXXXXXXXXXXXXXXVDVISFGEIEANQQKLSVFIDTINGQEDSSCHLVTIPVGSSIQVSLRTSLILMNEEIVNVGAVGFGM 348
            ++ + +  + H QNRNQK RIIIFLGSPIFEDESDLVKLAKKLKKEKVNVDVISFGEIEANQQKLSVFIDTINGQEDSSCHLVTIP GSSIQ SLR S ILMNEEI NVGAVGFGM
Sbjct:   88 TVRVSLLALRHRQNRNQKPRIIIFLGSPIFEDESDLVKLAKKLKKEKVNVDVISFGEIEANQQKLSVFIDTINGQEDSSCHLVTIPAGSSIQESLRKSPILMNEEIGNVGAVGFGM 203
[Close]
BLAST of SMED30013710 vs. Planmine SMEST
Match: SMESG000004706.1 (SMESG000004706.1)

HSP 1 Score: 166.007 bits (419), Expect = 1.482e-50
Identity = 99/116 (85.34%), Postives = 105/116 (90.52%), Query Frame = -3 
Query:    1 SIHLKISIILHGQNRNQKSRIIIFLGSPIFEDESDXXXXXXXXXXXXXXVDVISFGEIEANQQKLSVFIDTINGQEDSSCHLVTIPVGSSIQVSLRTSLILMNEEIVNVGAVGFGM 348
            ++ + +  + H QNRNQK RIIIFLGSPIF+DESDLVKLAKKLKKEKVNVDVISFGEIEANQQKLSVFIDTINGQEDSSCHLVTIP GSSIQ SLRTS ILMNEEI NVGAVGFGM
Sbjct:   82 TVRVSLLALRHRQNRNQKPRIIIFLGSPIFDDESDLVKLAKKLKKEKVNVDVISFGEIEANQQKLSVFIDTINGQEDSSCHLVTIPAGSSIQESLRTSPILMNEEIGNVGAVGFGM 197

HSP 2 Score: 154.066 bits (388), Expect = 8.348e-46
Identity = 74/84 (88.10%), Postives = 79/84 (94.05%), Query Frame = -2 
Query:  308 MIAVDNSDFIRNGDYSPSCFQAQVEAFNSFTNAKKRMNVENTCGLVTLSEHQIVSTLTTDMSKLHSKITSVNPSENINYSTRTK 559
            MIAVDNSDF+RNGDYSPS FQAQVEAFNSFTNAKKRMNVENTCGLVTLS+HQIVSTLTTDMSKLHSKI+SVN S NIN+ST  +
Sbjct:    1 MIAVDNSDFMRNGDYSPSRFQAQVEAFNSFTNAKKRMNVENTCGLVTLSDHQIVSTLTTDMSKLHSKISSVNLSGNINFSTTVR 84
[Close]
BLAST of SMED30013710 vs. Planmine SMEST
Match: SMESG000004870.1 (SMESG000004870.1)

HSP 1 Score: 144.436 bits (363), Expect = 1.501e-41
Identity = 69/90 (76.67%), Postives = 79/90 (87.78%), Query Frame = -2 
Query:  308 MSQEAIMIAVDNSDFIRNGDYSPSCFQAQVEAFNSFTNAKKRMNVENTCGLVTLSEHQIVSTLTTDMSKLHSKITSVNPSENINYSTRTK 577
            MSQEAIMIAVDNSDF+RNGDY+P+  QAQV+AFN FTNAKKRMNVENTCGLVTL+ +Q+V TLTTDMSKLHSKIT V+ S NIN+ T  +
Sbjct:    1 MSQEAIMIAVDNSDFMRNGDYNPNRLQAQVDAFNYFTNAKKRMNVENTCGLVTLANYQVVCTLTTDMSKLHSKITLVDLSGNINFCTTVR 90

HSP 2 Score: 130.954 bits (328), Expect = 2.014e-36
Identity = 79/121 (65.29%), Postives = 97/121 (80.17%), Query Frame = -3 
Query:    1 VKLLQSIHLKISIILHGQNRNQKSRIIIFLGSPIFEDESDXXXXXXXXXXXXXXVDVISFGEIEANQQKLSVFIDTINGQEDSSCHLVTIPVGSSIQVSLRTSLILMNEEIVNVGAVGFGM 363
            +    ++ + +  + H Q+RNQK RI++F+GSPIFEDE +L+KLAKKLKKEKVN+DVISFGE E NQ KL+ FIDTING++ S  HLVTIP GSS+Q SLRTS ILMNEE  N+GAVGFGM
Sbjct:   83 INFCTTVRVSLLALRHRQSRNQKPRIVVFVGSPIFEDEVELIKLAKKLKKEKVNIDVISFGESEENQHKLAAFIDTINGKDVSGSHLVTIPAGSSLQESLRTSPILMNEESGNLGAVGFGM 203
[Close]
BLAST of SMED30013710 vs. Planmine SMEST
Match: SMESG000004870.1 (SMESG000004870.1)

HSP 1 Score: 133.265 bits (334), Expect = 2.642e-37
Identity = 63/84 (75.00%), Postives = 73/84 (86.90%), Query Frame = -2 
Query:  308 MIAVDNSDFIRNGDYSPSCFQAQVEAFNSFTNAKKRMNVENTCGLVTLSEHQIVSTLTTDMSKLHSKITSVNPSENINYSTRTK 559
            MIAVDNSDF+RNGDY+P+  QAQV+AFN FTNAKKRMNVENTCGLVTL+ +Q+V TLTTDMSKLHSKIT V+ S NIN+ T  +
Sbjct:    1 MIAVDNSDFMRNGDYNPNRLQAQVDAFNYFTNAKKRMNVENTCGLVTLANYQVVCTLTTDMSKLHSKITLVDLSGNINFCTTVR 84

HSP 2 Score: 130.954 bits (328), Expect = 2.009e-36
Identity = 79/121 (65.29%), Postives = 97/121 (80.17%), Query Frame = -3 
Query:    1 VKLLQSIHLKISIILHGQNRNQKSRIIIFLGSPIFEDESDXXXXXXXXXXXXXXVDVISFGEIEANQQKLSVFIDTINGQEDSSCHLVTIPVGSSIQVSLRTSLILMNEEIVNVGAVGFGM 363
            +    ++ + +  + H Q+RNQK RI++F+GSPIFEDE +L+KLAKKLKKEKVN+DVISFGE E NQ KL+ FIDTING++ S  HLVTIP GSS+Q SLRTS ILMNEE  N+GAVGFGM
Sbjct:   77 INFCTTVRVSLLALRHRQSRNQKPRIVVFVGSPIFEDEVELIKLAKKLKKEKVNIDVISFGESEENQHKLAAFIDTINGKDVSGSHLVTIPAGSSLQESLRTSPILMNEESGNLGAVGFGM 197
The following BLAST results are available for this feature:
BLAST of SMED30013710 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 3
Match NameE-valueIdentityDescription
PSMD41.706e-3150.00proteasome 26S subunit, non-ATPase 4 [Source:HGNC ... [more]
PSMD43.021e-2751.89proteasome 26S subunit, non-ATPase 4 [Source:HGNC ... [more]
PSMD42.365e-1750.00proteasome 26S subunit, non-ATPase 4 [Source:HGNC ... [more]
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BLAST of SMED30013710 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 2
Match NameE-valueIdentityDescription
rpn-106.774e-2739.5326S proteasome non-ATPase regulatory subunit 4 [S... [more]
rpn-106.774e-2739.5326S proteasome non-ATPase regulatory subunit 4 [S... [more]
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BLAST of SMED30013710 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 2
Match NameE-valueIdentityDescription
Rpn108.599e-1541.13gene:FBgn0015283 transcript:FBtr0078368[more]
Rpn108.599e-1541.13gene:FBgn0015283 transcript:FBtr0333453[more]
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BLAST of SMED30013710 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 4
Match NameE-valueIdentityDescription
psmd4b1.522e-3151.89proteasome 26S subunit, non-ATPase 4b [Source:ZFIN... [more]
psmd4a1.589e-2750.94proteasome 26S subunit, non-ATPase 4a [Source:ZFIN... [more]
psmd4a2.379e-1849.12proteasome 26S subunit, non-ATPase 4a [Source:ZFIN... [more]
PSMD42.374e-1639.77proteasome 26S subunit, non-ATPase 4 [Source:HGNC ... [more]
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BLAST of SMED30013710 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30013710 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 3
Match NameE-valueIdentityDescription
Psmd41.205e-3150.00proteasome (prosome, macropain) 26S subunit, non-A... [more]
Psmd41.245e-3150.00proteasome (prosome, macropain) 26S subunit, non-A... [more]
Psmd41.297e-3150.00proteasome (prosome, macropain) 26S subunit, non-A... [more]
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BLAST of SMED30013710 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|O17453|PSMD4_SCHMA7.706e-3547.4126S proteasome non-ATPase regulatory subunit 4 OS=... [more]
sp|O35226|PSMD4_MOUSE7.059e-3150.0026S proteasome non-ATPase regulatory subunit 4 OS=... [more]
sp|O61742|PSMD4_CAEEL6.474e-2639.5326S proteasome non-ATPase regulatory subunit 4 OS=... [more]
sp|O94444|RPN10_SCHPO4.000e-2043.4226S proteasome regulatory subunit rpn10 OS=Schizos... [more]
sp|O82143|PSMDA_ORYSJ8.548e-2047.8326S proteasome non-ATPase regulatory subunit 4 hom... [more]
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BLAST of SMED30013710 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A183SB986.069e-3544.44VWFA domain-containing protein OS=Schistocephalus ... [more]
A0A0X3P3011.335e-3444.4426S proteasome non-ATPase regulatory subunit 4 OS=... [more]
A0A183R2Q21.234e-3247.41VWFA domain-containing protein OS=Schistosoma rodh... [more]
Q547D21.234e-3247.41Multiubiquitin binding protein S5a OS=Schistosoma ... [more]
A0A1A7Z0R51.600e-3051.75Proteasome (Prosome, macropain) 26S subunit, non-A... [more]
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BLAST of SMED30013710 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 1
Match NameE-valueIdentityDescription
psmd4a2.636e-3251.75proteasome 26S subunit, non-ATPase 4 [Source:NCBI ... [more]
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BLAST of SMED30013710 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 1
Match NameE-valueIdentityDescription
psmd4a2.674e-2051.75proteasome 26S subunit, non-ATPase 4a [Source:ZFIN... [more]
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BLAST of SMED30013710 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 1
Match NameE-valueIdentityDescription
RPN108.487e-1840.21Non-ATPase base subunit of the 19S RP of the 26S p... [more]
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BLAST of SMED30013710 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 1
Match NameE-valueIdentityDescription
EDO310823.477e-1645.83Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of SMED30013710 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 2
Match NameE-valueIdentityDescription
psmd4b1.542e-3149.1226S proteasome non-ATPase regulatory subunit 4 [So... [more]
psmd4a9.735e-1951.7526S proteasome non-ATPase regulatory subunit 4 [So... [more]
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BLAST of SMED30013710 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000004761.11.107e-5090.00SMESG000004761.1[more]
SMESG000004762.11.143e-5090.00SMESG000004762.1[more]
SMESG000004706.11.482e-5085.34SMESG000004706.1[more]
SMESG000004870.11.501e-4176.67SMESG000004870.1[more]
SMESG000004870.12.642e-3775.00SMESG000004870.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30013710 ID=SMED30013710|Name=SMED30013710|organism=Schmidtea mediterranea sexual|type=transcript|length=659bp
CATTCCAAATCCAACGGCACCAACATTCACAATTTCTTCATTCATTAGAA
TAAGGCTTGTTCTCAGTGATACCTGTATACTTGATCCAACTGGAATCGTT
ACTAAATGACAGCTGCTATCCTCTTGTCCATTAATTGTATCAATAAACAC
TGAGAGTTTCTGTTGATTTGCTTCTATTTCACCGAAACTTATAACATCAA
CATTCACTTTCTCTTTCTTCAATTTTTTAGCCAATTTAACTAGATCAGAC
TCGTCTTCAAAGATCGGACTTCCTAGGAAAATGATAATTCTTGACTTTTG
ATTTCTGTTTTGTCCGTGTAGAATAATTGATATTTTCAGATGGATTGACT
GAAGTAATTTTACTATGGAGTTTTGACATATCAGTTGTTAAAGTAGAAAC
AATTTGATGTTCGGAAAGTGTTACTAATCCACAAGTATTTTCTACATTCA
TTCTCTTCTTTGCATTAGTAAAAGAGTTAAATGCTTCTACTTGTGCTTGG
AAACAGCTAGGACTGTAATCGCCATTTCTTATGAAATCACTGTTATCAAC
TGCAATCATTATAGCTTCTTGGGACATTTTAGATGAGATATTAAATATAA
ATATATAAACATTTAATAATAATCAAATTAATAATATTATTAAAATTTTC
AGTTTGTCG
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protein sequence of SMED30013710-orf-1

>SMED30013710-orf-1 ID=SMED30013710-orf-1|Name=SMED30013710-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=107bp
MSQEAIMIAVDNSDFIRNGDYSPSCFQAQVEAFNSFTNAKKRMNVENTCG
LVTLSEHQIVSTLTTDMSKLHSKITSVNPSENINYSTRTKQKSKVKNYHF
PRKSDL*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0002109X1 cell
PLANA:0002111X2 cell
Vocabulary: INTERPRO
TermDefinition
IPR002035VWF_A