60S ribosomal protein L9

Overview


Name	60S ribosomal protein L9
Smed ID	SMED30013699
Length (bp)	661

Neoblast Clusters

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.

Expression of 60S ribosomal protein L9 (SMED30013699) t-SNE clustered cells

Violin plots show distribution of expression levels for 60S ribosomal protein L9 (SMED30013699) in cells (dots) of each of the 12 neoblast clusters.

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of 60S ribosomal protein L9 (SMED30013699) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for 60S ribosomal protein L9 (SMED30013699) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30013699

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 14

Expressed In	Reference Transcript	Gene Models	Published Transcript	Transcriptome	Publication
X1 cell	SMED30013699	h1SMcG0001973	SmedASXL_003200	SmedAsxl_ww_GCZZ01	PMID:26114597 Zhu et al., 2015
pharynx	SMED30013699	h1SMcG0001973	dd_Smed_v4_150_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
protonephridia	SMED30013699	h1SMcG0001973	dd_Smed_v4_150_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
nervous system	SMED30013699	h1SMcG0001973	dd_Smed_v4_150_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
gut	SMED30013699	h1SMcG0001973	dd_Smed_v4_150_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
epidermis	SMED30013699	h1SMcG0001973	dd_Smed_v4_150_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
cephalic ganglia	SMED30013699	h1SMcG0001973	dd_Smed_v4_150_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
muscle cell	SMED30013699	h1SMcG0001973	dd_Smed_v4_150_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
neoblast	SMED30013699	h1SMcG0001973	dd_Smed_v4_150_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
parenchyma	SMED30013699	h1SMcG0001973	dd_Smed_v4_150_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
parenchymal cell	SMED30013699	h1SMcG0001973	dd_Smed_v4_150_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
non-ciliated neuron	SMED30013699	h1SMcG0001973	dd_Smed_v4_150_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
cilated neuron	SMED30013699	h1SMcG0001973	dd_Smed_v4_150_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
neoblast	SMED30013699	h1SMcG0001973	dd_Smed_v6_150_0	dd_Smed_v6	PMID:29674432 Plass et al., 2018

Note: Hover over icons to view figure legend

Homology

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BLAST of 60S ribosomal protein L9 vs. Ensembl Human
Match: RPL9 (ribosomal protein L9 [Source:HGNC Symbol;Acc:HGNC:10369])

HSP 1 Score: 207.608 bits (527), Expect = 1.136e-67
Identity = 102/183 (55.74%), Postives = 135/183 (73.77%), Query Frame = 2

Query:   56 MKTILSEQVVEIPEGVKVTANARVLRVSGKRGLLKREFKHLAVEIHVI---KNTVKVVKYFGSKKDIAAVRTVASHIENMITGVTQGFKKKMKAVYAHFPINLVISDKGDSVTIRNFLGEKLDRHVDMKEGVKVSATGV-KDEIQIEGNDIELVAKCSALIQQKCKVRNKDIRKFLDGVYVSE 592
            MKTILS Q V+IPE V +T   R + V G RG L+R+F H+ VE+ ++   K  ++V K++G++K++A VRT+ SH++NMI GVT GF+ KM++VYAHFPIN+VI + G  V IRNFLGEK  R V M+ GV  S +   KDE+ +EGNDIELV+  +ALIQQ   V+NKDIRKFLDG+YVSE
Sbjct:    1 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSE 183

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Query:   56 MKTILSEQVVEIPEGVKVTANARVLRVSGKRGLLKREFKHLAVEIHVI---KNTVKVVKYFGSKKDIAAVRTVASHIENMITGVTQGFKKKMKAVYAHFPINLVISDKGDSVTIRNFLGEKLDRHVDMKEGVKVSATGV-KDEIQIEGNDIELVAKCSALIQQKCKVRNKDIRKFLDGVYVSE 592
            MKTILS Q V+IPE V +T   R + V G RG L+R+F H+ VE+ ++   K  ++V K++G++K++A VRT+ SH++NMI GVT GF+ KM++VYAHFPIN+VI + G  V IRNFLGEK  R V M+ GV  S +   KDE+ +EGNDIELV+  +ALIQQ   V+NKDIRKFLDG+YVSE
Sbjct:    1 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSE 183

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Query:   56 MKTILSEQVVEIPEGVKVTANARVLRVSGKRGLLKREFKHLAVEIHVI---KNTVKVVKYFGSKKDIAAVRTVASHIENMITGVTQGFKKKMKAVYAHFPINLVISDKGDSVTIRNFLGEKLDRHVDMKEGVKVSATGV-KDEIQIEGNDIELVAKCSALIQQKCKVRNKDIRKFLDGVYVSE 592
            MKTILS Q V+IPE V +T   R + V G RG L+R+F H+ VE+ ++   K  ++V K++G++K++A VRT+ SH++NMI GVT GF+ KM++VYAHFPIN+VI + G  V IRNFLGEK  R V M+ GV  S +   KDE+ +EGNDIELV+  +ALIQQ   V+NKDIRKFLDG+YVSE
Sbjct:    1 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSE 183

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BLAST of 60S ribosomal protein L9 vs. Ensembl Human
Match: RPL9 (ribosomal protein L9 [Source:HGNC Symbol;Acc:HGNC:10369])

HSP 1 Score: 200.675 bits (509), Expect = 3.830e-65
Identity = 99/182 (54.40%), Postives = 132/182 (72.53%), Query Frame = 2

Query:   56 MKTILSEQVVEIPEGVKVTANARVLRVSGKRGLLKREFKHLAVEIHVI---KNTVKVVKYFGSKKDIAAVRTVASHIENMITGVTQGFKKKMKAVYAHFPINLVISDKGDSVTIRNFLGEKLDRHVDMKEGVKVSATGVKDEIQIEGNDIELVAKCSALIQQKCKVRNKDIRKFLDGVYVSE 592
            MKTILS Q V+IPE V +T   R + V G RG L+R+F H+ VE+ ++   K  ++V K++G++K++A VRT+ SH++NMI GVT GF+ KM++VYAHFPIN+VI + G  V IRNFLGEK  R V M+      +   KDE+ +EGNDIELV+  +ALIQQ   V+NKDIRKFLDG+YVSE
Sbjct:    1 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRP----VSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSE 178

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BLAST of 60S ribosomal protein L9 vs. Ensembl Human
Match: RPL9 (ribosomal protein L9 [Source:HGNC Symbol;Acc:HGNC:10369])

HSP 1 Score: 191.815 bits (486), Expect = 4.108e-61
Identity = 102/211 (48.34%), Postives = 135/211 (63.98%), Query Frame = 2

Query:   56 MKTILSEQVVEIPEG----------------------------VKVTANARVLRVSGKRGLLKREFKHLAVEIHVI---KNTVKVVKYFGSKKDIAAVRTVASHIENMITGVTQGFKKKMKAVYAHFPINLVISDKGDSVTIRNFLGEKLDRHVDMKEGVKVSATGV-KDEIQIEGNDIELVAKCSALIQQKCKVRNKDIRKFLDGVYVSE 592
            MKTILS Q V+IPE                             V +T   R + V G RG L+R+F H+ VE+ ++   K  ++V K++G++K++A VRT+ SH++NMI GVT GF+ KM++VYAHFPIN+VI + G  V IRNFLGEK  R V M+ GV  S +   KDE+ +EGNDIELV+  +ALIQQ   V+NKDIRKFLDG+YVSE
Sbjct:    1 MKTILSNQTVDIPENGMRLDVFYLHLYCTFQALCGLTSVFSLLVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSE 211

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BLAST of 60S ribosomal protein L9 vs. Ensembl Celegans
Match: rpl-9 (60S ribosomal protein L9 [Source:UniProtKB/Swiss-Prot;Acc:Q95Y90])

HSP 1 Score: 196.052 bits (497), Expect = 1.692e-63
Identity = 96/181 (53.04%), Postives = 133/181 (73.48%), Query Frame = 2

Query:   56 MKTILSEQVVEIPEGVKVTANARVLRVSGKRGLLKREFKHLAVEIHVI-KNTVKVVKYFGSKKDIAAVRTVASHIENMITGVTQGFKKKMKAVYAHFPINLVISDKGDSVTIRNFLGEKLDRHVDMKEGVKVS-ATGVKDEIQIEGNDIELVAKCSALIQQKCKVRNKDIRKFLDGVYVSE 592
            MK I S   V  PEGV  T   R++ V+G RG ++++F+HL +E+  I K+T++V K+FG +K++AA+RTV SHI+NMI GVT GF+ KM++VYAHFPIN+ + D   +V IRNFLGEK+ R V + EGV  + +T  KDEI +EGND++ V++ +A IQQ   V+ KDIRKFLDG+YVSE
Sbjct:    1 MKLIESNDTVVFPEGVTFTVKNRIVHVTGPRGTIRKDFRHLHMEMERIGKSTLRVRKWFGVRKELAAIRTVCSHIKNMIKGVTVGFRYKMRSVYAHFPINVTLQDGNRTVEIRNFLGEKIVRRVPLPEGVIATISTAQKDEIVVEGNDVQFVSQAAARIQQSTAVKEKDIRKFLDGIYVSE 181

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BLAST of 60S ribosomal protein L9 vs. Ensembl Fly
Match: RpL9 (gene:FBgn0015756 transcript:FBtr0340226)

HSP 1 Score: 214.542 bits (545), Expect = 8.406e-71
Identity = 108/181 (59.67%), Postives = 139/181 (76.80%), Query Frame = 2

Query:   56 MKTILSEQVVEIPEGVKVTANARVLRVSGKRGLLKREFKHLAVEIHVI-KNTVKVVKYFGSKKDIAAVRTVASHIENMITGVTQGFKKKMKAVYAHFPINLVISDKGDSVTIRNFLGEKLDRHVDMKEGVK-VSATGVKDEIQIEGNDIELVAKCSALIQQKCKVRNKDIRKFLDGVYVSE 592
            M+TI S Q V+IP+ +K +  ARV+ ++G RG LKR FKHLA+++++  K T+KV K+FG+KK++AAVRTV SHIENMI GVT GF+ KM+AVYAHFPIN V S+    + IRNFLGEK  R V+M  GV  V++T  KDE+ +EGNDIE V+  +ALIQQ   V+NKDIRKFLDG+YVSE
Sbjct:    1 MRTINSNQCVKIPKDIKASVKARVVTITGTRGTLKRSFKHLALDMYMPDKRTLKVEKWFGTKKELAAVRTVCSHIENMIKGVTFGFQYKMRAVYAHFPINCVTSENNTVIEIRNFLGEKYIRRVEMAPGVTVVNSTAQKDELIVEGNDIESVSGSAALIQQSTTVKNKDIRKFLDGLYVSE 181

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BLAST of 60S ribosomal protein L9 vs. Ensembl Fly
Match: RpL9 (gene:FBgn0015756 transcript:FBtr0080163)

HSP 1 Score: 214.542 bits (545), Expect = 8.406e-71
Identity = 108/181 (59.67%), Postives = 139/181 (76.80%), Query Frame = 2

Query:   56 MKTILSEQVVEIPEGVKVTANARVLRVSGKRGLLKREFKHLAVEIHVI-KNTVKVVKYFGSKKDIAAVRTVASHIENMITGVTQGFKKKMKAVYAHFPINLVISDKGDSVTIRNFLGEKLDRHVDMKEGVK-VSATGVKDEIQIEGNDIELVAKCSALIQQKCKVRNKDIRKFLDGVYVSE 592
            M+TI S Q V+IP+ +K +  ARV+ ++G RG LKR FKHLA+++++  K T+KV K+FG+KK++AAVRTV SHIENMI GVT GF+ KM+AVYAHFPIN V S+    + IRNFLGEK  R V+M  GV  V++T  KDE+ +EGNDIE V+  +ALIQQ   V+NKDIRKFLDG+YVSE
Sbjct:    1 MRTINSNQCVKIPKDIKASVKARVVTITGTRGTLKRSFKHLALDMYMPDKRTLKVEKWFGTKKELAAVRTVCSHIENMIKGVTFGFQYKMRAVYAHFPINCVTSENNTVIEIRNFLGEKYIRRVEMAPGVTVVNSTAQKDELIVEGNDIESVSGSAALIQQSTTVKNKDIRKFLDGLYVSE 181

[Close]

BLAST of 60S ribosomal protein L9 vs. Ensembl Fly
Match: RpL9 (gene:FBgn0015756 transcript:FBtr0080164)

HSP 1 Score: 214.542 bits (545), Expect = 8.406e-71
Identity = 108/181 (59.67%), Postives = 139/181 (76.80%), Query Frame = 2

Query:   56 MKTILSEQVVEIPEGVKVTANARVLRVSGKRGLLKREFKHLAVEIHVI-KNTVKVVKYFGSKKDIAAVRTVASHIENMITGVTQGFKKKMKAVYAHFPINLVISDKGDSVTIRNFLGEKLDRHVDMKEGVK-VSATGVKDEIQIEGNDIELVAKCSALIQQKCKVRNKDIRKFLDGVYVSE 592
            M+TI S Q V+IP+ +K +  ARV+ ++G RG LKR FKHLA+++++  K T+KV K+FG+KK++AAVRTV SHIENMI GVT GF+ KM+AVYAHFPIN V S+    + IRNFLGEK  R V+M  GV  V++T  KDE+ +EGNDIE V+  +ALIQQ   V+NKDIRKFLDG+YVSE
Sbjct:    1 MRTINSNQCVKIPKDIKASVKARVVTITGTRGTLKRSFKHLALDMYMPDKRTLKVEKWFGTKKELAAVRTVCSHIENMIKGVTFGFQYKMRAVYAHFPINCVTSENNTVIEIRNFLGEKYIRRVEMAPGVTVVNSTAQKDELIVEGNDIESVSGSAALIQQSTTVKNKDIRKFLDGLYVSE 181

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BLAST of 60S ribosomal protein L9 vs. Ensembl Zebrafish
Match: rpl9 (ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646])

HSP 1 Score: 207.223 bits (526), Expect = 9.184e-68
Identity = 99/183 (54.10%), Postives = 137/183 (74.86%), Query Frame = 2

Query:   56 MKTILSEQVVEIPEGVKVTANARVLRVSGKRGLLKREFKHLAVEIHVI---KNTVKVVKYFGSKKDIAAVRTVASHIENMITGVTQGFKKKMKAVYAHFPINLVISDKGDSVTIRNFLGEKLDRHVDMKEGVKVSATGV-KDEIQIEGNDIELVAKCSALIQQKCKVRNKDIRKFLDGVYVSE 592
            MKTILS Q V+IP+ V V+   R + V G RG+L+REF H+ +E+ ++   +  ++V K++G++K++A VRT+ SH++NMI GVT GF+ KM++VYAHFPIN+VI + G  V IRNFLGEK  R V M++GV  + +   KDE+ +EGNDIELV+  +ALIQQ   V+NKDIRKFLDG+YVSE
Sbjct:    1 MKTILSNQTVDIPDNVTVSLKGRTVTVKGPRGVLRREFNHINLELSLLGKKQKKLRVDKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQESGSLVEIRNFLGEKYIRRVRMRQGVACAVSAAQKDELVLEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSE 183

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Query:   56 MKTILSEQVVEIPEGVKVTANARVLRVSGKRGLLKREFKHLAVEIHVI---KNTVKVVKYFGSKKDIAAVRTVASHIENMITGVTQGFKKKMKAVYAHFPINLVISDKGDSVTIRNFLGEKLDRHVDMKEGVKVSATGV-KDEIQIEGNDIELVAKCSALIQQKCKVRNKDIRKFLDGVYVSE 592
            MKTILS Q V+IP+ V V+   R + V G RG+L+REF H+ +E+ ++   +  ++V K++G++K++A VRT+ SH++NMI GVT GF+ KM++VYAHFPIN+VI + G  V IRNFLGEK  R V M++GV  + +   KDE+ +EGNDIELV+  +ALIQQ   V+NKDIRKFLDG+YVSE
Sbjct:    1 MKTILSNQTVDIPDNVTVSLKGRTVTVKGPRGVLRREFNHINLELSLLGKKQKKLRVDKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQESGSLVEIRNFLGEKYIRRVRMRQGVACAVSAAQKDELVLEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSE 183

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Query:   56 MKTILSEQVVEIPEGVKVTANARVLRVSGKRGLLKREFKHLAVEIHVI---KNTVKVVKYFGSKKDIAAVRTVASHIENMITGVTQGFKKKMKAVYAHFPINLVISDKGDSVTIRNFLGEKLDRHVDMKEGVKVSATGV-KDEIQIEGNDIELVAKCSALIQQKCKVRNKDIRKFLDGVYVSE 592
            MKTILS Q V+IP+ V V+   R + V G RG+L+REF H+ +E+ ++   +  ++V K++G++K++A VRT+ SH++NMI GVT GF+ KM++VYAHFPIN+VI + G  V IRNFLGEK  R V M++GV  + +   KDE+ +EGNDIELV+  +ALIQQ   V+NKDIRKFLDG+YVSE
Sbjct:    1 MKTILSNQTVDIPDNVTVSLKGRTVTVKGPRGVLRREFNHINLELSLLGKKQKKLRVDKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQESGSLVEIRNFLGEKYIRRVRMRQGVACAVSAAQKDELVLEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSE 183

[Close]

Query:   56 MKTILSEQVVEIPEGVKVTANARVLRVSGKRGLLKREFKHLAVEIHVI---KNTVKVVKYFGSKKDIAAVRTVASHIENMITGVTQGFKKKMKAVYAHFPINLVISDKGDSVTIRNFLGEKLDRHVDMKEGVKVSATGV-KDEIQIEGNDIELVAKCSALIQQKCKVRNKDIRKFLDGVYVSE 592
            MKTILS Q V+IP+ V V+   R + V G RG+L+REF H+ +E+ ++   +  ++V K++G++K++A VRT+ SH++NMI GVT GF+ KM++VYAHFPIN+VI + G  V IRNFLGEK  R V M++GV  + +   KDE+ +EGNDIELV+  +ALIQQ   V+NKDIRKFLDG+YVSE
Sbjct:    1 MKTILSNQTVDIPDNVTVSLKGRTVTVKGPRGVLRREFNHINLELSLLGKKQKKLRVDKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQESGSLVEIRNFLGEKYIRRVRMRQGVACAVSAAQKDELVLEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSE 183

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BLAST of 60S ribosomal protein L9 vs. Ensembl Zebrafish
Match: rfc1 (replication factor C (activator 1) 1 [Source:ZFIN;Acc:ZDB-GENE-070410-99])

HSP 1 Score: 206.068 bits (523), Expect = 2.887e-67
Identity = 99/183 (54.10%), Postives = 136/183 (74.32%), Query Frame = 2

Query:   56 MKTILSEQVVEIPEGVKVTANARVLRVSGKRGLLKREFKHLAVEIHVI---KNTVKVVKYFGSKKDIAAVRTVASHIENMITGVTQGFKKKMKAVYAHFPINLVISDKGDSVTIRNFLGEKLDRHVDMKEGVKVSATGV-KDEIQIEGNDIELVAKCSALIQQKCKVRNKDIRKFLDGVYVSE 592
            MKTILS Q V+IP+ V V+   R + V G RG+L+REF H+ +E+ ++   +  ++V K++G++K++A VRT+ SH++NMI GVT GF+ KM++VYAHFPIN+VI + G  V IRNFLGEK  R V M++GV  + +   KDE+ +EGNDIELV+  +ALIQQ   VR KDIRKFLDG+YVSE
Sbjct:    1 MKTILSNQTVDIPDNVTVSLKGRTVTVKGPRGVLRREFNHINLELSLLGKKQKKLRVDKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQESGSLVEIRNFLGEKYIRRVRMRQGVACAVSAAQKDELVLEGNDIELVSNSAALIQQATTVRKKDIRKFLDGIYVSE 183

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BLAST of 60S ribosomal protein L9 vs. Ensembl Xenopus
Match: ENSXETT00000029772.1 (ribosomal protein L9 [Source:NCBI gene;Acc:100379906])

HSP 1 Score: 204.142 bits (518), Expect = 6.993e-65
Identity = 98/183 (53.55%), Postives = 136/183 (74.32%), Query Frame = 2

Query:   56 MKTILSEQVVEIPEGVKVTANARVLRVSGKRGLLKREFKHLAVEIHVI---KNTVKVVKYFGSKKDIAAVRTVASHIENMITGVTQGFKKKMKAVYAHFPINLVISDKGDSVTIRNFLGEKLDRHVDMKEGVKVSATGV-KDEIQIEGNDIELVAKCSALIQQKCKVRNKDIRKFLDGVYVSE 592
            MKTILS Q+V+IPE V ++   R + V G RG+L++ F H+ VE+ ++   K  ++V K++G++K++A VRT+ SH++NM+ GVT GF+ KM++VYAHFPIN+VI + G  V IRNFLGEK  R V M+ GV  + +   KDE+ +EGNDIELV+  +ALIQQ   V+NKDIRKFLDG+YVSE
Sbjct:  114 MKTILSNQIVDIPENVDISLKGRTVTVKGPRGVLRKNFNHINVELCLLGKKKRRLRVDKWWGNRKELATVRTICSHVQNMVKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRSGVACALSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSE 296

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BLAST of 60S ribosomal protein L9 vs. Ensembl Xenopus
Match: virma (vir like m6A methyltransferase associated [Source:Xenbase;Acc:XB-GENE-493771])

HSP 1 Score: 131.724 bits (330), Expect = 5.258e-39
Identity = 64/104 (61.54%), Postives = 79/104 (75.96%), Query Frame = 2

Query:  284 MITGVTQGFKKKMKAVYAHFPINLVISDKGDSVTIRNFLGEKLDRHVDMKEGVKVS-ATGVKDEIQIEGNDIELVAKCSALIQQKCKVRNKDIRKFLDGVYVSE 592
            M+ GVT GF+ KM++VYAHFPIN+VI + G  V IRNFLGEK  R V M+ GV  + +   KDE+ +EGNDIELV+  +ALIQQ   V+NKDIRKFLDG+YVSE
Sbjct:    1 MVKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRSGVACALSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSE 104

[Close]

BLAST of 60S ribosomal protein L9 vs. Ensembl Mouse
Match: Rpl9 (ribosomal protein L9 [Source:MGI Symbol;Acc:MGI:1298373])

HSP 1 Score: 207.994 bits (528), Expect = 4.876e-68
Identity = 102/183 (55.74%), Postives = 136/183 (74.32%), Query Frame = 2

Query:   56 MKTILSEQVVEIPEGVKVTANARVLRVSGKRGLLKREFKHLAVEIHVI---KNTVKVVKYFGSKKDIAAVRTVASHIENMITGVTQGFKKKMKAVYAHFPINLVISDKGDSVTIRNFLGEKLDRHVDMKEGVKVSATGV-KDEIQIEGNDIELVAKCSALIQQKCKVRNKDIRKFLDGVYVSE 592
            MKTILS Q V+IPE V++T   R + V G RG L+R+F H+ VE+ ++   K  ++V K++G++K++A VRT+ SH++NMI GVT GF+ KM++VYAHFPIN+VI + G  V IRNFLGEK  R V M+ GV  S +   KDE+ +EGNDIELV+  +ALIQQ   V+NKDIRKFLDG+YVSE
Sbjct:    1 MKTILSNQTVDIPENVEITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRTGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSE 183

[Close]

Query:   56 MKTILSEQVVEIPEGVKVTANARVLRVSGKRGLLKREFKHLAVEIHVI---KNTVKVVKYFGSKKDIAAVRTVASHIENMITGVTQGFKKKMKAVYAHFPINLVISDKGDSVTIRNFLGEKLDRHVDMKEGVKVSATGV-KDEIQIEGNDIELVAKCSALIQQKCKVRNKDIRKFLDGVYVSE 592
            MKTILS Q V+IPE V++T   R + V G RG L+R+F H+ VE+ ++   K  ++V K++G++K++A VRT+ SH++NMI GVT GF+ KM++VYAHFPIN+VI + G  V IRNFLGEK  R V M+ GV  S +   KDE+ +EGNDIELV+  +ALIQQ   V+NKDIRKFLDG+YVSE
Sbjct:    1 MKTILSNQTVDIPENVEITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRTGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSE 183

[Close]

BLAST of 60S ribosomal protein L9 vs. Ensembl Mouse
Match: Rpl9-ps6 (ribosomal protein L9, pseudogene 6 [Source:MGI Symbol;Acc:MGI:3642682])

HSP 1 Score: 207.994 bits (528), Expect = 5.999e-68
Identity = 102/183 (55.74%), Postives = 136/183 (74.32%), Query Frame = 2

Query:   56 MKTILSEQVVEIPEGVKVTANARVLRVSGKRGLLKREFKHLAVEIHVI---KNTVKVVKYFGSKKDIAAVRTVASHIENMITGVTQGFKKKMKAVYAHFPINLVISDKGDSVTIRNFLGEKLDRHVDMKEGVKVSATGV-KDEIQIEGNDIELVAKCSALIQQKCKVRNKDIRKFLDGVYVSE 592
            MKTILS Q V+IPE V++T   R + V G RG L+R+F H+ VE+ ++   K  ++V K++G++K++A VRT+ SH++NMI GVT GF+ KM++VYAHFPIN+VI + G  V IRNFLGEK  R V M+ GV  S +   KDE+ +EGNDIELV+  +ALIQQ   V+NKDIRKFLDG+YVSE
Sbjct:    1 MKTILSNQTVDIPENVEITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKWWGNRKELATVRTICSHVQNMIKGVTLGFQYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRTGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSE 183

[Close]

BLAST of 60S ribosomal protein L9 vs. Ensembl Mouse
Match: Rpl9 (ribosomal protein L9 [Source:MGI Symbol;Acc:MGI:1298373])

HSP 1 Score: 204.142 bits (518), Expect = 1.908e-66
Identity = 100/181 (55.25%), Postives = 134/181 (74.03%), Query Frame = 2

Query:   62 TILSEQVVEIPEGVKVTANARVLRVSGKRGLLKREFKHLAVEIHVI---KNTVKVVKYFGSKKDIAAVRTVASHIENMITGVTQGFKKKMKAVYAHFPINLVISDKGDSVTIRNFLGEKLDRHVDMKEGVKVSATGV-KDEIQIEGNDIELVAKCSALIQQKCKVRNKDIRKFLDGVYVSE 592
            TILS Q V+IPE V++T   R + V G RG L+R+F H+ VE+ ++   K  ++V K++G++K++A VRT+ SH++NMI GVT GF+ KM++VYAHFPIN+VI + G  V IRNFLGEK  R V M+ GV  S +   KDE+ +EGNDIELV+  +ALIQQ   V+NKDIRKFLDG+YVSE
Sbjct:    2 TILSNQTVDIPENVEITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRTGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSE 182

[Close]

BLAST of 60S ribosomal protein L9 vs. Ensembl Mouse
Match: Rpl9 (ribosomal protein L9 [Source:MGI Symbol;Acc:MGI:1298373])

HSP 1 Score: 168.318 bits (425), Expect = 1.123e-52
Identity = 83/161 (51.55%), Postives = 114/161 (70.81%), Query Frame = 2

Query:   56 MKTILSEQVVEIPEGVKVTANARVLRVSGKRGLLKREFKHLAVEIHVI---KNTVKVVKYFGSKKDIAAVRTVASHIENMITGVTQGFKKKMKAVYAHFPINLVISDKGDSVTIRNFLGEKLDRHVDMKEGVKVSATGV-KDEIQIEGNDIELVAKCSALI 526
            MKTILS Q V+IPE V++T   R + V G RG L+R+F H+ VE+ ++   K  ++V K++G++K++A VRT+ SH++NMI GVT GF+ KM++VYAHFPIN+VI + G  V IRNFLGEK  R V M+ GV  S +   KDE+ +EGNDIELV+     I
Sbjct:    1 MKTILSNQTVDIPENVEITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRTGVACSVSQAQKDELILEGNDIELVSNSGVYI 161

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BLAST of 60S ribosomal protein L9 vs. UniProt/SwissProt
Match: sp|P50882|RL9_DROME (60S ribosomal protein L9 OS=Drosophila melanogaster OX=7227 GN=RpL9 PE=1 SV=2)

HSP 1 Score: 214.542 bits (545), Expect = 8.426e-70
Identity = 108/181 (59.67%), Postives = 139/181 (76.80%), Query Frame = 2

Query:   56 MKTILSEQVVEIPEGVKVTANARVLRVSGKRGLLKREFKHLAVEIHVI-KNTVKVVKYFGSKKDIAAVRTVASHIENMITGVTQGFKKKMKAVYAHFPINLVISDKGDSVTIRNFLGEKLDRHVDMKEGVK-VSATGVKDEIQIEGNDIELVAKCSALIQQKCKVRNKDIRKFLDGVYVSE 592
            M+TI S Q V+IP+ +K +  ARV+ ++G RG LKR FKHLA+++++  K T+KV K+FG+KK++AAVRTV SHIENMI GVT GF+ KM+AVYAHFPIN V S+    + IRNFLGEK  R V+M  GV  V++T  KDE+ +EGNDIE V+  +ALIQQ   V+NKDIRKFLDG+YVSE
Sbjct:    1 MRTINSNQCVKIPKDIKASVKARVVTITGTRGTLKRSFKHLALDMYMPDKRTLKVEKWFGTKKELAAVRTVCSHIENMIKGVTFGFQYKMRAVYAHFPINCVTSENNTVIEIRNFLGEKYIRRVEMAPGVTVVNSTAQKDELIVEGNDIESVSGSAALIQQSTTVKNKDIRKFLDGLYVSE 181

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BLAST of 60S ribosomal protein L9 vs. UniProt/SwissProt
Match: sp|P51410|RL9_MOUSE (60S ribosomal protein L9 OS=Mus musculus OX=10090 GN=Rpl9 PE=2 SV=2)

HSP 1 Score: 207.994 bits (528), Expect = 3.411e-67
Identity = 102/183 (55.74%), Postives = 136/183 (74.32%), Query Frame = 2

Query:   56 MKTILSEQVVEIPEGVKVTANARVLRVSGKRGLLKREFKHLAVEIHVI---KNTVKVVKYFGSKKDIAAVRTVASHIENMITGVTQGFKKKMKAVYAHFPINLVISDKGDSVTIRNFLGEKLDRHVDMKEGVKVSATGV-KDEIQIEGNDIELVAKCSALIQQKCKVRNKDIRKFLDGVYVSE 592
            MKTILS Q V+IPE V++T   R + V G RG L+R+F H+ VE+ ++   K  ++V K++G++K++A VRT+ SH++NMI GVT GF+ KM++VYAHFPIN+VI + G  V IRNFLGEK  R V M+ GV  S +   KDE+ +EGNDIELV+  +ALIQQ   V+NKDIRKFLDG+YVSE
Sbjct:    1 MKTILSNQTVDIPENVEITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRTGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSE 183

[Close]

BLAST of 60S ribosomal protein L9 vs. UniProt/SwissProt
Match: sp|P32969|RL9_HUMAN (60S ribosomal protein L9 OS=Homo sapiens OX=9606 GN=RPL9 PE=1 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 5.453e-67
Identity = 102/183 (55.74%), Postives = 135/183 (73.77%), Query Frame = 2

Query:   56 MKTILSEQVVEIPEGVKVTANARVLRVSGKRGLLKREFKHLAVEIHVI---KNTVKVVKYFGSKKDIAAVRTVASHIENMITGVTQGFKKKMKAVYAHFPINLVISDKGDSVTIRNFLGEKLDRHVDMKEGVKVSATGV-KDEIQIEGNDIELVAKCSALIQQKCKVRNKDIRKFLDGVYVSE 592
            MKTILS Q V+IPE V +T   R + V G RG L+R+F H+ VE+ ++   K  ++V K++G++K++A VRT+ SH++NMI GVT GF+ KM++VYAHFPIN+VI + G  V IRNFLGEK  R V M+ GV  S +   KDE+ +EGNDIELV+  +ALIQQ   V+NKDIRKFLDG+YVSE
Sbjct:    1 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSE 183

[Close]

BLAST of 60S ribosomal protein L9 vs. UniProt/SwissProt
Match: sp|P17077|RL9_RAT (60S ribosomal protein L9 OS=Rattus norvegicus OX=10116 GN=Rpl9 PE=1 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 5.822e-67
Identity = 102/183 (55.74%), Postives = 135/183 (73.77%), Query Frame = 2

Query:   56 MKTILSEQVVEIPEGVKVTANARVLRVSGKRGLLKREFKHLAVEIHVI---KNTVKVVKYFGSKKDIAAVRTVASHIENMITGVTQGFKKKMKAVYAHFPINLVISDKGDSVTIRNFLGEKLDRHVDMKEGVKVSATGV-KDEIQIEGNDIELVAKCSALIQQKCKVRNKDIRKFLDGVYVSE 592
            MKTILS Q V+IPE V +T   R + V G RG L+R+F H+ VE+ ++   K  ++V K++G++K++A VRT+ SH++NMI GVT GF+ KM++VYAHFPIN+VI + G  V IRNFLGEK  R V M+ GV  S +   KDE+ +EGNDIELV+  +ALIQQ   V+NKDIRKFLDG+YVSE
Sbjct:    1 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRTGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSE 183

[Close]

BLAST of 60S ribosomal protein L9 vs. UniProt/SwissProt
Match: sp|Q90YW0|RL9_ICTPU (60S ribosomal protein L9 OS=Ictalurus punctatus OX=7998 GN=rpl9 PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 6.216e-67
Identity = 100/183 (54.64%), Postives = 136/183 (74.32%), Query Frame = 2

Query:   56 MKTILSEQVVEIPEGVKVTANARVLRVSGKRGLLKREFKHLAVEIHVI---KNTVKVVKYFGSKKDIAAVRTVASHIENMITGVTQGFKKKMKAVYAHFPINLVISDKGDSVTIRNFLGEKLDRHVDMKEGVKVSATGV-KDEIQIEGNDIELVAKCSALIQQKCKVRNKDIRKFLDGVYVSE 592
            MKTILS Q V+IP+ V VT   R + V G RG+L+REF H+ +E+ ++   +  ++V K++G++K++A VRT+ SH++NMI GVT GF+ KM++VYAHFPIN+VI + G  V IRNFLGEK  R V M+ GV  + +   KDE+ +EGNDIELV+  +ALIQQ   V+NKDIRKFLDG+YVSE
Sbjct:    1 MKTILSTQTVDIPDNVDVTLKGRTVSVKGPRGVLRREFNHINLELRLLGKKQKKLRVDKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQETGSLVEIRNFLGEKYIRRVRMRPGVNCALSAAQKDELVLEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSE 183

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BLAST of 60S ribosomal protein L9 vs. TrEMBL
Match: A0A183LSV2 (Uncharacterized protein OS=Schistosoma margrebowiei OX=48269 GN=SMRZ_LOCUS6877 PE=4 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 1.877e-75
Identity = 112/178 (62.92%), Postives = 142/178 (79.78%), Query Frame = 2

Query:   56 MKTILSEQVVEIPEGVKVTANARVLRVSGKRGLLKREFKHLAVEIHVIKNTVKVVKYFGSKKDIAAVRTVASHIENMITGVTQGFKKKMKAVYAHFPINLVISDKGDSVTIRNFLGEKLDRHVDMKEGVKVSATGVKDEIQIEGNDIELVAKCSALIQQKCKVRNKDIRKFLDGVYVS 589
            MK I S + V++P G+KV A  RV+ V G RG LKR+F HL+++I V    + V KYFG++K++AAVRTV SHI NMI GVT G++ K+K+VYAHFPIN++ S+ G  + IRNFLGEK ++ V M+ GVK+SATGVKDEIQ+EGNDIE VAKC+ALIQQ CKVR+KDIRKFLDG+YVS
Sbjct:    1 MKIIKSSETVKVPPGIKVKAIKRVVYVKGPRGSLKRDFGHLSLDIKVFSKKIVVTKYFGNRKELAAVRTVCSHIGNMIKGVTSGYRYKLKSVYAHFPINMIPSNDGSKLEIRNFLGEKANKLVPMEPGVKISATGVKDEIQVEGNDIEKVAKCAALIQQSCKVRHKDIRKFLDGIYVS 178

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BLAST of 60S ribosomal protein L9 vs. TrEMBL
Match: Q86DX4 (Clone ZZZ458 mRNA sequence OS=Schistosoma japonicum OX=6182 GN=RpL9 PE=2 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 2.336e-75
Identity = 111/178 (62.36%), Postives = 142/178 (79.78%), Query Frame = 2

Query:   56 MKTILSEQVVEIPEGVKVTANARVLRVSGKRGLLKREFKHLAVEIHVIKNTVKVVKYFGSKKDIAAVRTVASHIENMITGVTQGFKKKMKAVYAHFPINLVISDKGDSVTIRNFLGEKLDRHVDMKEGVKVSATGVKDEIQIEGNDIELVAKCSALIQQKCKVRNKDIRKFLDGVYVS 589
            M+ I S + V+IP G+K  A  RV+ + G RG LKR+FKHL+++I V    + V KYFG++K++AAVRTV SHI NMI GVT G++ K+K+VYAHFPIN++ S +G  + IRNFLGEK ++ V M+ GVKVSATGVKDEIQ+EGNDIE VAKC+ALIQQ C+VR+KDIRKFLDG+YVS
Sbjct:    1 MRIIKSSESVKIPPGIKAKAIKRVIYIKGPRGSLKRDFKHLSLDIRVFSKRIVVTKYFGNRKELAAVRTVCSHISNMIKGVTSGYRYKLKSVYAHFPINMIPSAEGSKLEIRNFLGEKANKFVLMEAGVKVSATGVKDEIQVEGNDIEKVAKCAALIQQSCRVRHKDIRKFLDGIYVS 178

[Close]

BLAST of 60S ribosomal protein L9 vs. TrEMBL
Match: A0A094ZQR7 (60S ribosomal protein L9 OS=Schistosoma haematobium OX=6185 GN=MS3_04781 PE=4 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 2.388e-75
Identity = 112/178 (62.92%), Postives = 142/178 (79.78%), Query Frame = 2

Query:   56 MKTILSEQVVEIPEGVKVTANARVLRVSGKRGLLKREFKHLAVEIHVIKNTVKVVKYFGSKKDIAAVRTVASHIENMITGVTQGFKKKMKAVYAHFPINLVISDKGDSVTIRNFLGEKLDRHVDMKEGVKVSATGVKDEIQIEGNDIELVAKCSALIQQKCKVRNKDIRKFLDGVYVS 589
            MK I S + V++P G+KV A  RV+ V G RG LKR+F HL+++I V    + V KYFG++K++AAVRTV SHI NMI GVT G++ K+K+VYAHFPIN++ S+ G  + IRNFLGEK ++ V M+ GVK+SATGVKDEIQ+EGNDIE VAKC+ALIQQ CKVR+KDIRKFLDG+YVS
Sbjct:    1 MKIIKSSETVKVPPGIKVKAIKRVVYVKGPRGSLKRDFGHLSLDIKVFSKKIVVTKYFGNRKELAAVRTVCSHIGNMIKGVTSGYRYKLKSVYAHFPINMIPSNDGSKLEIRNFLGEKANKLVPMEPGVKISATGVKDEIQVEGNDIEKVAKCAALIQQSCKVRHKDIRKFLDGIYVS 178

[Close]

BLAST of 60S ribosomal protein L9 vs. TrEMBL
Match: A0A430QIV2 (Large subunit ribosomal protein L9e OS=Schistosoma bovis OX=6184 GN=DC041_0008003 PE=4 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 2.388e-75
Identity = 112/178 (62.92%), Postives = 142/178 (79.78%), Query Frame = 2

Query:   56 MKTILSEQVVEIPEGVKVTANARVLRVSGKRGLLKREFKHLAVEIHVIKNTVKVVKYFGSKKDIAAVRTVASHIENMITGVTQGFKKKMKAVYAHFPINLVISDKGDSVTIRNFLGEKLDRHVDMKEGVKVSATGVKDEIQIEGNDIELVAKCSALIQQKCKVRNKDIRKFLDGVYVS 589
            MK I S + V++P G+KV A  RV+ V G RG LKR+F HL+++I V    + V KYFG++K++AAVRTV SHI NMI GVT G++ K+K+VYAHFPIN++ S+ G  + IRNFLGEK ++ V M+ GVK+SATGVKDEIQ+EGNDIE VAKC+ALIQQ CKVR+KDIRKFLDG+YVS
Sbjct:    1 MKIIKSSETVKVPPGIKVKAIKRVVYVKGPRGSLKRDFGHLSLDIKVFSKKIVVTKYFGNRKELAAVRTVCSHIGNMIKGVTSGYRYKLKSVYAHFPINMIPSNDGSKLEIRNFLGEKANKLVPMEPGVKISATGVKDEIQVEGNDIEKVAKCAALIQQSCKVRHKDIRKFLDGIYVS 178

[Close]

BLAST of 60S ribosomal protein L9 vs. TrEMBL
Match: B3GUS6 (60S ribosomal protein OS=Schistosoma japonicum OX=6182 GN=RpL9 PE=2 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 2.606e-75
Identity = 114/186 (61.29%), Postives = 146/186 (78.49%), Query Frame = 2

Query:   56 MKTILSEQVVEIPEGVKVTANARVLRVSGKRGLLKREFKHLAVEIHVIKNTVKVVKYFGSKKDIAAVRTVASHIENMITGVTQGFKKKMKAVYAHFPINLVISDKGDSVTIRNFLGEKLDRHVDMKEGVKVSATGVKDEIQIEGNDIELVAKCSALIQQKCKVRNKDIRKFLDGVYVS--ETCKCE 607
            M+ I S + V+IP G+K  A  RV+ + G RG LKR+FKHL+++I V    + V KYFG++K++AAVRTV SHI NMI GVT G++ K+K+VYAHFPIN++ S +G  + IRNFLGEK ++ V M+ GVKVSATGVKDEIQ+EGNDIE VAKC+ALIQQ C+VR+KDIRKFLDG+YVS  ET + E
Sbjct:    1 MRIIKSSESVKIPPGIKAKAIKRVIYIKGPRGSLKRDFKHLSLDIRVFSKRIVVTKYFGNRKELAAVRTVCSHISNMIKGVTSGYRYKLKSVYAHFPINMIPSAEGSKLEIRNFLGEKANKFVLMEAGVKVSATGVKDEIQVEGNDIEKVAKCAALIQQSCRVRHKDIRKFLDGIYVSSKETIESE 186

[Close]

BLAST of 60S ribosomal protein L9 vs. Ensembl Cavefish
Match: rpl9 (ribosomal protein L9 [Source:NCBI gene;Acc:103043937])

HSP 1 Score: 206.453 bits (524), Expect = 2.033e-67
Identity = 99/183 (54.10%), Postives = 135/183 (73.77%), Query Frame = 2

Query:   56 MKTILSEQVVEIPEGVKVTANARVLRVSGKRGLLKREFKHLAVEIHVI---KNTVKVVKYFGSKKDIAAVRTVASHIENMITGVTQGFKKKMKAVYAHFPINLVISDKGDSVTIRNFLGEKLDRHVDMKEGVKVSATGV-KDEIQIEGNDIELVAKCSALIQQKCKVRNKDIRKFLDGVYVSE 592
            MKTILS Q V+IP+ V V+   R + V G RG L+REF H+ +E+ ++   +  ++V K++G++K++A VRT+ SH++NMI GVT GF+ KM++VYAHFPIN+VI + G  V IRNFLGEK  R V M+ GV  + +   KDE+ +EGNDIELV+  +ALIQQ   V+NKDIRKFLDG+YVSE
Sbjct:    1 MKTILSTQTVDIPDKVDVSLKGRTITVKGPRGTLRREFSHINLELRLLGKKQKKLRVDKWWGNRKELATVRTICSHVQNMIKGVTMGFRYKMRSVYAHFPINVVIQESGSLVEIRNFLGEKYIRRVRMRPGVNCALSAAQKDELVLEGNDIELVSNSAALIQQATSVKNKDIRKFLDGIYVSE 183

[Close]

Query:   56 MKTILSEQVVEIPEGVKVTANARVLRVSGKRGLLKREFKHLAVEIHVI---KNTVKVVKYFGSKKDIAAVRTVASHIENMITGVTQGFKKKMKAVYAHFPINLVISDKGDSVTIRNFLGEKLDRHVDMKEGVKVSATGV-KDEIQIEGNDIELVAKCSALIQQKCKVRNKDIRKFLDGVYVSE 592
            MKTILS Q V+IP+ V V+   R + V G RG L+REF H+ +E+ ++   +  ++V K++G++K++A VRT+ SH++NMI GVT GF+ KM++VYAHFPIN+VI + G  V IRNFLGEK  R V M+ GV  + +   KDE+ +EGNDIELV+  +ALIQQ   V+NKDIRKFLDG+YVSE
Sbjct:    1 MKTILSTQTVDIPDKVDVSLKGRTITVKGPRGTLRREFSHINLELRLLGKKQKKLRVDKWWGNRKELATVRTICSHVQNMIKGVTMGFRYKMRSVYAHFPINVVIQESGSLVEIRNFLGEKYIRRVRMRPGVNCALSAAQKDELVLEGNDIELVSNSAALIQQATSVKNKDIRKFLDGIYVSE 183

[Close]

BLAST of 60S ribosomal protein L9 vs. Ensembl Cavefish
Match: rpl9 (ribosomal protein L9 [Source:NCBI gene;Acc:103043937])

HSP 1 Score: 205.682 bits (522), Expect = 3.584e-67
Identity = 100/188 (53.19%), Postives = 135/188 (71.81%), Query Frame = 2

Query:   56 MKTILSEQVVEIPEGVKVTANARVLRVSGKRGLLKREFKHLAVEIHVI---KNTVKVVKYFGSKKDIAAVRTVASHIENMITGVTQGFKKKMKAVYAHFPINLVISDKGDSVTIRNFLGEKLDRHVDMKEGVKVSATGV-KDEIQIEGNDIELVAKCSALIQQKCKVRNKDIRKFLDGVYVSETCKCE 607
            MKTILS Q V+IP+ V V+   R + V G RG L+REF H+ +E+ ++   +  ++V K++G++K++A VRT+ SH++NMI GVT GF+ KM++VYAHFPIN+VI + G  V IRNFLGEK  R V M+ GV  + +   KDE+ +EGNDIELV+  +ALIQQ   VR KDIRKFLDG+YVSE    E
Sbjct:    1 MKTILSTQTVDIPDKVDVSLKGRTITVKGPRGTLRREFSHINLELRLLGKKQKKLRVDKWWGNRKELATVRTICSHVQNMIKGVTMGFRYKMRSVYAHFPINVVIQESGSLVEIRNFLGEKYIRRVRMRPGVNCALSAAQKDELVLEGNDIELVSNSAALIQQATSVRKKDIRKFLDGIYVSEKTTVE 188

[Close]

BLAST of 60S ribosomal protein L9 vs. Ensembl Sea Lamprey
Match: rpl9 (ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646])

HSP 1 Score: 164.081 bits (414), Expect = 2.975e-52
Identity = 76/129 (58.91%), Postives = 101/129 (78.29%), Query Frame = 2

Query:  209 VKVVKYFGSKKDIAAVRTVASHIENMITGVTQGFKKKMKAVYAHFPINLVISDKGDSVTIRNFLGEKLDRHVDMKEGVKVS-ATGVKDEIQIEGNDIELVAKCSALIQQKCKVRNKDIRKFLDGVYVSE 592
            ++V K++G++K++A VRT+ SH+ NM+ GVT GF+ KM++VYAHFPIN+V+ D G  V IRNFLGEK  R V M+ GV  + +T  KDE+ +EGNDIELV+  +ALIQQ   V+NKDIRKFLDG+YVSE
Sbjct:    2 LRVEKWWGNRKELATVRTICSHVMNMMKGVTLGFRYKMRSVYAHFPINVVVQDTGKLVEIRNFLGEKYTRRVQMRPGVTCALSTNQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSE 130

[Close]

BLAST of 60S ribosomal protein L9 vs. Ensembl Yeast
Match: RPL9B (Ribosomal 60S subunit protein L9B; homologous to mammalian ribosomal protein L9 and bacterial L6; RPL9B has a paralog, RPL9A, that arose from a single-locus duplication [Source:SGD;Acc:S000005011])

HSP 1 Score: 176.407 bits (446), Expect = 1.540e-56
Identity = 92/182 (50.55%), Postives = 132/182 (72.53%), Query Frame = 2

Query:   56 MKTILSEQVVEIPEGVKVTANARVLRVSGKRGLLKREFKHLAVEIHVIKNT-VKVVKYFGSKKDIAAVRTVASHIENMITGVTQGFKKKMKAVYAHFPINLVISDKGDS--VTIRNFLGEKLDRHVDMKEGVKVS-ATGVKDEIQIEGNDIELVAKCSALIQQKCKVRNKDIRKFLDGVYVS 589
            MK I +EQ +EIPEGV V+  +R+++V G RG L +  KH+ V    + N  +KV  + G +K +AA+RTV S ++NMITGVT+G+K KM+ VYAHFPIN+ I +K  +  + +RNFLG+K  R+V +++GV +  +T VKDEI + GN +E V++ +A +QQ C+VRNKDIRKFLDG+YVS
Sbjct:    1 MKYIQTEQQIEIPEGVTVSIKSRIVKVVGPRGTLTKNLKHIDVTFTKVNNQLIKVAVHNGDRKHVAALRTVKSLVDNMITGVTKGYKYKMRYVYAHFPINVNIVEKDGAKFIEVRNFLGDKKIRNVPVRDGVTIEFSTNVKDEIVLSGNSVEDVSQNAADLQQICRVRNKDIRKFLDGIYVS 182

[Close]

BLAST of 60S ribosomal protein L9 vs. Ensembl Yeast
Match: RPL9A (Ribosomal 60S subunit protein L9A; homologous to mammalian ribosomal protein L9 and bacterial L6; RPL9A has a paralog, RPL9B, that arose from a single-locus duplication [Source:SGD;Acc:S000003115])

HSP 1 Score: 175.637 bits (444), Expect = 3.090e-56
Identity = 91/182 (50.00%), Postives = 132/182 (72.53%), Query Frame = 2

Query:   56 MKTILSEQVVEIPEGVKVTANARVLRVSGKRGLLKREFKHLAVEIHVIKNT-VKVVKYFGSKKDIAAVRTVASHIENMITGVTQGFKKKMKAVYAHFPINLVISDKGDS--VTIRNFLGEKLDRHVDMKEGVKVS-ATGVKDEIQIEGNDIELVAKCSALIQQKCKVRNKDIRKFLDGVYVS 589
            MK I +EQ +E+PEGV V+  +R+++V G RG L +  KH+ V    + N  +KV  + G +K +AA+RTV S ++NMITGVT+G+K KM+ VYAHFPIN+ I +K  +  + +RNFLG+K  R+V +++GV +  +T VKDEI + GN +E V++ +A +QQ C+VRNKDIRKFLDG+YVS
Sbjct:    1 MKYIQTEQQIEVPEGVTVSIKSRIVKVVGPRGTLTKNLKHIDVTFTKVNNQLIKVAVHNGGRKHVAALRTVKSLVDNMITGVTKGYKYKMRYVYAHFPINVNIVEKDGAKFIEVRNFLGDKKIRNVPVRDGVTIEFSTNVKDEIVLSGNSVEDVSQNAADLQQICRVRNKDIRKFLDGIYVS 182

[Close]

BLAST of 60S ribosomal protein L9 vs. Ensembl Nematostella
Match: EDO41746 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S3C2])

HSP 1 Score: 206.068 bits (523), Expect = 9.871e-68
Identity = 105/181 (58.01%), Postives = 135/181 (74.59%), Query Frame = 2

Query:   56 MKTILSEQVVEIPEGVKVTANARVLRVSGKRGLLKREFKHLAVEI-HVIKNTVKVVKYFGSKKDIAAVRTVASHIENMITGVTQGFKKKMKAVYAHFPINLVISDKGDSVTIRNFLGEKLDRHVDMKEGVKV-SATGVKDEIQIEGNDIELVAKCSALIQQKCKVRNKDIRKFLDGVYVSE 592
            MKTIL+ + V IP+ V+V   +RV+ V+G RG LKR F+HL +E+  V K+ V+V  +F S+K++A V+T+ +HIENMI GV  G++ KM+AVYAHFPIN+ I + G  V +RNFLGEK  R V M+ GV   + TG KDEI IEGNDIELV+  +ALIQQ  KV+NKDIRKFLDGVYVSE
Sbjct:    1 MKTILASETVTIPDNVEVKVKSRVVTVTGPRGTLKRNFRHLRLELTKVGKDKVRVDVWFASRKELACVKTIITHIENMIKGVIYGYRYKMRAVYAHFPINIAIQENGTLVEVRNFLGEKYVRRVRMRPGVICNNQTGTKDEIIIEGNDIELVSNSAALIQQSTKVKNKDIRKFLDGVYVSE 181

[Close]

BLAST of 60S ribosomal protein L9 vs. Ensembl Medaka
Match: rpl9 (ribosomal protein L9 [Source:NCBI gene;Acc:111947653])

HSP 1 Score: 199.134 bits (505), Expect = 1.361e-64
Identity = 97/183 (53.01%), Postives = 134/183 (73.22%), Query Frame = 2

Query:   56 MKTILSEQVVEIPEGVKVTANARVLRVSGKRGLLKREFKHLAVEIHVI---KNTVKVVKYFGSKKDIAAVRTVASHIENMITGVTQGFKKKMKAVYAHFPINLVISDKGDSVTIRNFLGEKLDRHVDMKEGVKVSATGV-KDEIQIEGNDIELVAKCSALIQQKCKVRNKDIRKFLDGVYVSE 592
            MKTILS Q V++P+ V+V    R + V G RG L REF H+ +++ ++   +  ++V K++G++K++A VRT+ SH++NMI GVT GF+ KM++VYAHFPIN+VI + G  V IRNFLGEK  R V M+ GV  + +   KDE+ +EGNDIELV+  +ALIQQ   V+NKDIRKFLDG+YVSE
Sbjct:    1 MKTILSSQTVDLPDNVEVRLKGRTVIVKGPRGKLTREFNHINLDLSLLGKKQKKLRVDKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGQLVEIRNFLGEKYIRRVRMRAGVMCAVSAAQKDELVLEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSE 183

[Close]

BLAST of 60S ribosomal protein L9 vs. Ensembl Medaka
Match: rpl9 (ribosomal protein L9 [Source:NCBI gene;Acc:111947653])

HSP 1 Score: 198.364 bits (503), Expect = 2.451e-64
Identity = 97/183 (53.01%), Postives = 133/183 (72.68%), Query Frame = 2

Query:   56 MKTILSEQVVEIPEGVKVTANARVLRVSGKRGLLKREFKHLAVEIHVI---KNTVKVVKYFGSKKDIAAVRTVASHIENMITGVTQGFKKKMKAVYAHFPINLVISDKGDSVTIRNFLGEKLDRHVDMKEGVKVSATGV-KDEIQIEGNDIELVAKCSALIQQKCKVRNKDIRKFLDGVYVSE 592
            MKTILS Q V++P+ V+V    R + V G RG L REF H+ +++ ++   +  ++V K++G++K++A VRT+ SH++NMI GVT GF+ KM++VYAHFPIN+VI + G  V IRNFLGEK  R V M+ GV  + +   KDE+ +EGNDIELV+  +ALIQQ   VR KDIRKFLDG+YVSE
Sbjct:    1 MKTILSSQTVDLPDNVEVRLKGRTVIVKGPRGKLTREFNHINLDLSLLGKKQKKLRVDKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGQLVEIRNFLGEKYIRRVRMRAGVMCAVSAAQKDELVLEGNDIELVSNSAALIQQATTVRKKDIRKFLDGIYVSE 183

[Close]

BLAST of 60S ribosomal protein L9 vs. Ensembl Medaka
Match: rpl9 (ribosomal protein L9 [Source:NCBI gene;Acc:111947653])

HSP 1 Score: 199.134 bits (505), Expect = 4.558e-64
Identity = 97/183 (53.01%), Postives = 134/183 (73.22%), Query Frame = 2

Query:   56 MKTILSEQVVEIPEGVKVTANARVLRVSGKRGLLKREFKHLAVEIHVI---KNTVKVVKYFGSKKDIAAVRTVASHIENMITGVTQGFKKKMKAVYAHFPINLVISDKGDSVTIRNFLGEKLDRHVDMKEGVKVSATGV-KDEIQIEGNDIELVAKCSALIQQKCKVRNKDIRKFLDGVYVSE 592
            MKTILS Q V++P+ V+V    R + V G RG L REF H+ +++ ++   +  ++V K++G++K++A VRT+ SH++NMI GVT GF+ KM++VYAHFPIN+VI + G  V IRNFLGEK  R V M+ GV  + +   KDE+ +EGNDIELV+  +ALIQQ   V+NKDIRKFLDG+YVSE
Sbjct:   41 MKTILSSQTVDLPDNVEVRLKGRTVIVKGPRGKLTREFNHINLDLSLLGKKQKKLRVDKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGQLVEIRNFLGEKYIRRVRMRAGVMCAVSAAQKDELVLEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSE 223

[Close]

BLAST of 60S ribosomal protein L9 vs. Planmine SMEST
Match: SMESG000003774.1 (SMESG000003774.1)

HSP 1 Score: 369.777 bits (948), Expect = 3.080e-132
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 2

Query:   56 MKTILSEQVVEIPEGVKVTANARVLRVSGKRGLLKREFKHLAVEIHVIKNTVKVVKYFGSKKDIAAVRTVASHIENMITGVTQGFKKKMKAVYAHFPINLVISDKGDSVTIRNFLGEKLDRHVDMKEGVKVSATGVKDEIQIEGNDIELVAKCSALIQQKCKVRNKDIRKFLDGVYVSETCKCE 607
            MKTILSEQVVEIPEGVKVTANARVLRVSGKRGLLKREFKHLAVEIHVIKNTVKVVKYFGSKKDIAAVRTVASHIENMITGVTQGFKKKMKAVYAHFPINLVISDKGDSVTIRNFLGEKLDRHVDMKEGVKVSATGVKDEIQIEGNDIELVAKCSALIQQKCKVRNKDIRKFLDGVYVSETCKCE
Sbjct:    1 MKTILSEQVVEIPEGVKVTANARVLRVSGKRGLLKREFKHLAVEIHVIKNTVKVVKYFGSKKDIAAVRTVASHIENMITGVTQGFKKKMKAVYAHFPINLVISDKGDSVTIRNFLGEKLDRHVDMKEGVKVSATGVKDEIQIEGNDIELVAKCSALIQQKCKVRNKDIRKFLDGVYVSETCKCE 184

The following BLAST results are available for this feature:

BLAST of 60S ribosomal protein L9 vs. Ensembl Human
BLAST of 60S ribosomal protein L9 vs. Ensembl Celegans
BLAST of 60S ribosomal protein L9 vs. Ensembl Fly
BLAST of 60S ribosomal protein L9 vs. Ensembl Zebrafish
BLAST of 60S ribosomal protein L9 vs. Ensembl Xenopus
BLAST of 60S ribosomal protein L9 vs. Ensembl Mouse
BLAST of 60S ribosomal protein L9 vs. UniProt/SwissProt
BLAST of 60S ribosomal protein L9 vs. TrEMBL
BLAST of 60S ribosomal protein L9 vs. Ensembl Cavefish
BLAST of 60S ribosomal protein L9 vs. Ensembl Sea Lamprey
BLAST of 60S ribosomal protein L9 vs. Ensembl Yeast
BLAST of 60S ribosomal protein L9 vs. Ensembl Nematostella
BLAST of 60S ribosomal protein L9 vs. Ensembl Medaka
BLAST of 60S ribosomal protein L9 vs. Planmine SMEST

BLAST of 60S ribosomal protein L9 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5


Match Name	E-value	Identity	Description
RPL9	1.136e-67	55.74	ribosomal protein L9 [Source:HGNC Symbol;Acc:HGNC:...	[more]
RPL9	1.136e-67	55.74	ribosomal protein L9 [Source:HGNC Symbol;Acc:HGNC:...	[more]
RPL9	1.136e-67	55.74	ribosomal protein L9 [Source:HGNC Symbol;Acc:HGNC:...	[more]
RPL9	3.830e-65	54.40	ribosomal protein L9 [Source:HGNC Symbol;Acc:HGNC:...	[more]
RPL9	4.108e-61	48.34	ribosomal protein L9 [Source:HGNC Symbol;Acc:HGNC:...	[more]

BLAST of 60S ribosomal protein L9 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 1


Match Name	E-value	Identity	Description
rpl-9	1.692e-63	53.04	60S ribosomal protein L9 [Source:UniProtKB/Swiss-...	[more]

BLAST of 60S ribosomal protein L9 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 3


Match Name	E-value	Identity	Description
RpL9	8.406e-71	59.67	gene:FBgn0015756 transcript:FBtr0340226	[more]
RpL9	8.406e-71	59.67	gene:FBgn0015756 transcript:FBtr0080163	[more]
RpL9	8.406e-71	59.67	gene:FBgn0015756 transcript:FBtr0080164	[more]

BLAST of 60S ribosomal protein L9 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
rpl9	9.184e-68	54.10	ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030...	[more]
rpl9	9.184e-68	54.10	ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030...	[more]
rpl9	9.184e-68	54.10	ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030...	[more]
rpl9	9.184e-68	54.10	ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030...	[more]
rfc1	2.887e-67	54.10	replication factor C (activator 1) 1 [Source:ZFIN;...	[more]

BLAST of 60S ribosomal protein L9 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 2


Match Name	E-value	Identity	Description
ENSXETT00000029772.1	6.993e-65	53.55	ribosomal protein L9 [Source:NCBI gene;Acc:1003799...	[more]
virma	5.258e-39	61.54	vir like m6A methyltransferase associated [Source:...	[more]

BLAST of 60S ribosomal protein L9 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5


Match Name	E-value	Identity	Description
Rpl9	4.876e-68	55.74	ribosomal protein L9 [Source:MGI Symbol;Acc:MGI:12...	[more]
Rpl9	4.876e-68	55.74	ribosomal protein L9 [Source:MGI Symbol;Acc:MGI:12...	[more]
Rpl9-ps6	5.999e-68	55.74	ribosomal protein L9, pseudogene 6 [Source:MGI Sym...	[more]
Rpl9	1.908e-66	55.25	ribosomal protein L9 [Source:MGI Symbol;Acc:MGI:12...	[more]
Rpl9	1.123e-52	51.55	ribosomal protein L9 [Source:MGI Symbol;Acc:MGI:12...	[more]

BLAST of 60S ribosomal protein L9 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5


Match Name	E-value	Identity	Description
sp\|P50882\|RL9_DROME	8.426e-70	59.67	60S ribosomal protein L9 OS=Drosophila melanogaste...	[more]
sp\|P51410\|RL9_MOUSE	3.411e-67	55.74	60S ribosomal protein L9 OS=Mus musculus OX=10090 ...	[more]
sp\|P32969\|RL9_HUMAN	5.453e-67	55.74	60S ribosomal protein L9 OS=Homo sapiens OX=9606 G...	[more]
sp\|P17077\|RL9_RAT	5.822e-67	55.74	60S ribosomal protein L9 OS=Rattus norvegicus OX=1...	[more]
sp\|Q90YW0\|RL9_ICTPU	6.216e-67	54.64	60S ribosomal protein L9 OS=Ictalurus punctatus OX...	[more]

BLAST of 60S ribosomal protein L9 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A183LSV2	1.877e-75	62.92	Uncharacterized protein OS=Schistosoma margrebowie...	[more]
Q86DX4	2.336e-75	62.36	Clone ZZZ458 mRNA sequence OS=Schistosoma japonicu...	[more]
A0A094ZQR7	2.388e-75	62.92	60S ribosomal protein L9 OS=Schistosoma haematobiu...	[more]
A0A430QIV2	2.388e-75	62.92	Large subunit ribosomal protein L9e OS=Schistosoma...	[more]
B3GUS6	2.606e-75	61.29	60S ribosomal protein OS=Schistosoma japonicum OX=...	[more]

BLAST of 60S ribosomal protein L9 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 3


Match Name	E-value	Identity	Description
rpl9	2.033e-67	54.10	ribosomal protein L9 [Source:NCBI gene;Acc:1030439...	[more]
rpl9	2.033e-67	54.10	ribosomal protein L9 [Source:NCBI gene;Acc:1030439...	[more]
rpl9	3.584e-67	53.19	ribosomal protein L9 [Source:NCBI gene;Acc:1030439...	[more]

BLAST of 60S ribosomal protein L9 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 1


Match Name	E-value	Identity	Description
rpl9	2.975e-52	58.91	ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030...	[more]

BLAST of 60S ribosomal protein L9 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 2


Match Name	E-value	Identity	Description
RPL9B	1.540e-56	50.55	Ribosomal 60S subunit protein L9B; homologous to m...	[more]
RPL9A	3.090e-56	50.00	Ribosomal 60S subunit protein L9A; homologous to m...	[more]

BLAST of 60S ribosomal protein L9 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 1


Match Name	E-value	Identity	Description
EDO41746	9.871e-68	58.01	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]

BLAST of 60S ribosomal protein L9 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 3


Match Name	E-value	Identity	Description
rpl9	1.361e-64	53.01	ribosomal protein L9 [Source:NCBI gene;Acc:1119476...	[more]
rpl9	2.451e-64	53.01	ribosomal protein L9 [Source:NCBI gene;Acc:1119476...	[more]
rpl9	4.558e-64	53.01	ribosomal protein L9 [Source:NCBI gene;Acc:1119476...	[more]

BLAST of 60S ribosomal protein L9 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 1


Match Name	E-value	Identity	Description
SMESG000003774.1	3.080e-132	100.00	SMESG000003774.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Sequences

The following sequences are available for this feature:

transcript sequence
protein sequence

transcript sequence

>SMED30013699 ID=SMED30013699|Name=60S ribosomal protein L9|organism=Schmidtea mediterranea sexual|type=transcript|length=661bp
TTTTAGTATATATTTAAAATCTCAATAATTTTCTAATAATTTTGTTAAGT
ATATAATGAAAACTATATTGTCAGAACAAGTTGTAGAAATTCCAGAAGGA
GTTAAGGTAACTGCTAATGCTAGAGTTCTACGAGTTTCTGGAAAACGTGG
TTTATTGAAACGTGAATTTAAACACTTAGCTGTTGAAATCCATGTTATTA
AAAATACAGTTAAAGTAGTTAAATATTTCGGAAGCAAAAAGGACATCGCA
GCTGTTAGAACTGTTGCTTCACATATAGAAAATATGATCACTGGAGTTAC
TCAAGGTTTTAAAAAGAAGATGAAGGCAGTCTACGCTCATTTCCCTATTA
ACCTTGTTATCTCTGACAAAGGTGATTCAGTTACAATCAGAAATTTCTTG
GGTGAGAAATTAGATCGTCACGTTGATATGAAAGAGGGTGTCAAGGTCAG
TGCTACTGGAGTTAAGGATGAAATTCAAATTGAAGGAAACGATATTGAAC
TTGTTGCAAAATGCTCTGCTTTAATCCAACAAAAATGCAAAGTACGAAAT
AAGGATATCCGTAAATTTTTGGATGGTGTTTACGTATCGGAAACCTGCAA
GTGTGAATAAACCTTTTGGAATTGAATAAAGATTTGGATTTTAAAAAAAA
AGATCGGAAGA

protein sequence of SMED30013699-orf-1

>SMED30013699-orf-1 ID=SMED30013699-orf-1|Name=SMED30013699-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=185bp
MKTILSEQVVEIPEGVKVTANARVLRVSGKRGLLKREFKHLAVEIHVIKN
TVKVVKYFGSKKDIAAVRTVASHIENMITGVTQGFKKKMKAVYAHFPINL
VISDKGDSVTIRNFLGEKLDRHVDMKEGVKVSATGVKDEIQIEGNDIELV
AKCSALIQQKCKVRNKDIRKFLDGVYVSETCKCE*

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **Planarian Anatomy**
Term	Definition
PLANA:0000026	gut
PLANA:0000429	neoblast
PLANA:0002032	epidermal cell
PLANA:0002109	X1 cell

Vocabulary: **INTERPRO**
Term	Definition
IPR020040	Ribosomal_L6_a/b-dom
IPR000702	Ribosomal_L6

Vocabulary: **biological process**
Term	Definition
GO:0006412	translation

Vocabulary: **cellular component**
Term	Definition
GO:0005840	ribosome
GO:0005622	intracellular

Vocabulary: **molecular function**
Term	Definition
GO:0019843	rRNA binding
GO:0003735	structural constituent of ribosome

Main menu

60S ribosomal protein L9

Zeng et. al., 2018

▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Davies et. al., 2017

PAGE et. al., 2020

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 14

Owlery

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