Mediator of RNA polymerase II transcription subunit 8
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30013672 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 4
Homology
BLAST of Mediator of RNA polymerase II transcription subunit 8 vs. Ensembl Human
Match: MED8 (mediator complex subunit 8 [Source:HGNC Symbol;Acc:HGNC:19971]) HSP 1 Score: 75.485 bits (184), Expect = 1.211e-15 Identity = 45/150 (30.00%), Postives = 81/150 (54.00%), Query Frame = 1 Query: 118 WSKYLNIFGLLATELNNIVKTMLTDKNLQLDNLVMIPVALNPNPDQNLINLTQDRIKAFTYEVPPQYLRTLLDPKVQHARKEQLIKASNLSAEIVSKQNAS-NKVVDSALKELSSLKNQIDVDNTEKAIKQNTMTEIQELFNCMSNGKGL 564 W L+ F LL+ +LN + K + +K N V+IP+ L+P+ D++L+ T+ R+ F++EV P +LRT DP+V+ K+ A+ + A+ KQ S NK+ + L+++S + + + + T+ L ++ GKGL Sbjct: 42 WPSVLDSFALLSGQLNTLNKVLKHEKTPLFRNQVIIPLVLSPDRDEDLMRQTEGRVPVFSHEVVPDHLRTKPDPEVEEQEKQLTTDAARIGADAAQKQIQSLNKMCSNLLEKISKEERESESGGLRPNKQTFNPTDTNALVAAVAFGKGL 191
BLAST of Mediator of RNA polymerase II transcription subunit 8 vs. Ensembl Human
Match: MED8 (mediator complex subunit 8 [Source:HGNC Symbol;Acc:HGNC:19971]) HSP 1 Score: 75.485 bits (184), Expect = 1.630e-15 Identity = 45/150 (30.00%), Postives = 81/150 (54.00%), Query Frame = 1 Query: 118 WSKYLNIFGLLATELNNIVKTMLTDKNLQLDNLVMIPVALNPNPDQNLINLTQDRIKAFTYEVPPQYLRTLLDPKVQHARKEQLIKASNLSAEIVSKQNAS-NKVVDSALKELSSLKNQIDVDNTEKAIKQNTMTEIQELFNCMSNGKGL 564 W L+ F LL+ +LN + K + +K N V+IP+ L+P+ D++L+ T+ R+ F++EV P +LRT DP+V+ K+ A+ + A+ KQ S NK+ + L+++S + + + + T+ L ++ GKGL Sbjct: 42 WPSVLDSFALLSGQLNTLNKVLKHEKTPLFRNQVIIPLVLSPDRDEDLMRQTEGRVPVFSHEVVPDHLRTKPDPEVEEQEKQLTTDAARIGADAAQKQIQSLNKMCSNLLEKISKEERESESGGLRPNKQTFNPTDTNALVAAVAFGKGL 191
BLAST of Mediator of RNA polymerase II transcription subunit 8 vs. Ensembl Fly
Match: MED8 (gene:FBgn0034503 transcript:FBtr0086297) HSP 1 Score: 77.7962 bits (190), Expect = 6.389e-17 Identity = 45/155 (29.03%), Postives = 85/155 (54.84%), Query Frame = 1 Query: 118 WSKYLNIFGLLATELNNIVKTMLTDKNLQLDNLVMIPVALNPNPDQNLINLTQDRIKAFTYEVPPQYLRTLLDPKVQHARKEQLIKASNLSAEIVSKQ-NASNKVVDSALKELSSLKNQIDVDNTEKAIKQNT--MTEIQELFNCMSNGKGLKLS 573 W +L+ F ++++ L + K + ++ L N ++P+ ++ + D LIN+T+ R+ F++++ P YLRT DP + + KA+NL+ + KQ NKVV L +S + + +++++ + Q T M + Q L + GKGLKL+ Sbjct: 42 WPTFLDNFAIISSHLTGLTKILAKEQCPPLRNRTVLPLLVSMDRDDTLINITEGRVPVFSHDIVPDYLRTRPDPITEQKMLQNEQKAANLTNDAAMKQVTQYNKVVSHVLDMVSKAREEWEIESSSRTGIQQTSSMADTQLLVAAVGMGKGLKLT 196
BLAST of Mediator of RNA polymerase II transcription subunit 8 vs. Ensembl Zebrafish
Match: med8 (mediator complex subunit 8 [Source:NCBI gene;Acc:404615]) HSP 1 Score: 77.7962 bits (190), Expect = 1.090e-16 Identity = 48/154 (31.17%), Postives = 85/154 (55.19%), Query Frame = 1 Query: 118 WSKYLNIFGLLATELNNIVKTMLTDKNLQLDNLVMIPVALNPNPDQNLINLTQDRIKAFTYEVPPQYLRTLLDPKVQHARKEQLIKASNLSAEIVSKQ-NASNKVVDSALKELSSLKNQIDVDNTEKAIKQNTMT----EIQELFNCMSNGKGL 564 W L+ F L++ +LN I K + +K + V+IP+ L+P+ D+ L LT+ R+ F++E+ P +LRT DP+V+ K +A+ + E+ KQ A NK+ + L++L++ + D D+ A++QN + + L + GKGL Sbjct: 43 WPSVLDNFALISGQLNTINKLLRNEKTPSYKSQVIIPLLLSPDRDEELAKLTEHRVPVFSHEIVPDHLRTKPDPEVEEQEKHLSAEAARIGPEVAQKQIQALNKLCSNLLEKLNNPRE--DRDSETSALRQNKPSFNPADTNALVAAVGFGKGL 194
BLAST of Mediator of RNA polymerase II transcription subunit 8 vs. Ensembl Xenopus
Match: elob (elongin B [Source:Xenbase;Acc:XB-GENE-959169]) HSP 1 Score: 77.411 bits (189), Expect = 2.060e-16 Identity = 46/150 (30.67%), Postives = 85/150 (56.67%), Query Frame = 1 Query: 118 WSKYLNIFGLLATELNNIVKTMLTDKNLQLDNLVMIPVALNPNPDQNLINLTQDRIKAFTYEVPPQYLRTLLDPKVQHARKEQLIKASNLSAEIVSKQNAS-NKVVDSALKELSSLKNQIDVDNTEKAIKQNTMTEIQELFNCMSNGKGL 564 W L+ F LL+ +LN + K + +K L N V+IP+ L+P+ D+ ++ LT+ R+ F++EV P +LRT DP V+ K+ +A+ +++E KQ S NK+ + L ++S + + ++ + + + T+ L ++ GKGL Sbjct: 42 WPSVLDSFALLSGQLNTLNKVLKNEKTPLLRNQVIIPLLLSPDRDEEIMRLTEGRVPVFSHEVVPDHLRTKPDPDVEELEKQLSAEAARITSEAAQKQVQSMNKMCSNLLDKISKEERESELGSLRQNKQTFNPTDTNALVAAVAFGKGL 191
BLAST of Mediator of RNA polymerase II transcription subunit 8 vs. Ensembl Xenopus
Match: elob (elongin B [Source:Xenbase;Acc:XB-GENE-959169]) HSP 1 Score: 77.411 bits (189), Expect = 2.060e-16 Identity = 46/150 (30.67%), Postives = 85/150 (56.67%), Query Frame = 1 Query: 118 WSKYLNIFGLLATELNNIVKTMLTDKNLQLDNLVMIPVALNPNPDQNLINLTQDRIKAFTYEVPPQYLRTLLDPKVQHARKEQLIKASNLSAEIVSKQNAS-NKVVDSALKELSSLKNQIDVDNTEKAIKQNTMTEIQELFNCMSNGKGL 564 W L+ F LL+ +LN + K + +K L N V+IP+ L+P+ D+ ++ LT+ R+ F++EV P +LRT DP V+ K+ +A+ +++E KQ S NK+ + L ++S + + ++ + + + T+ L ++ GKGL Sbjct: 42 WPSVLDSFALLSGQLNTLNKVLKNEKTPLLRNQVIIPLLLSPDRDEEIMRLTEGRVPVFSHEVVPDHLRTKPDPDVEELEKQLSAEAARITSEAAQKQVQSMNKMCSNLLDKISKEERESELGSLRQNKQTFNPTDTNALVAAVAFGKGL 191
BLAST of Mediator of RNA polymerase II transcription subunit 8 vs. Ensembl Mouse
Match: Med8 (mediator complex subunit 8 [Source:MGI Symbol;Acc:MGI:1915269]) HSP 1 Score: 73.559 bits (179), Expect = 4.214e-15 Identity = 44/150 (29.33%), Postives = 80/150 (53.33%), Query Frame = 1 Query: 118 WSKYLNIFGLLATELNNIVKTMLTDKNLQLDNLVMIPVALNPNPDQNLINLTQDRIKAFTYEVPPQYLRTLLDPKVQHARKEQLIKASNLSAEIVSKQNAS-NKVVDSALKELSSLKNQIDVDNTEKAIKQNTMTEIQELFNCMSNGKGL 564 W L+ F LL+ +LN + K + +K N V+IP+ L+P+ D++L+ T+ R+ F++EV P +LRT DP+V+ K+ A+ + A+ KQ S NK+ + L+++S + + + + + L ++ GKGL Sbjct: 42 WPSVLDSFALLSGQLNTLNKVLKHEKTPLFRNQVIIPLVLSPDRDEDLMRQTEGRVPVFSHEVVPDHLRTKPDPEVEEQEKQLTTDAARIGADAAQKQIQSLNKMCSNLLEKISKEERESESGGLRPNKQTFNPGDTNALVAAVAFGKGL 191
BLAST of Mediator of RNA polymerase II transcription subunit 8 vs. Ensembl Mouse
Match: Med8 (mediator complex subunit 8 [Source:MGI Symbol;Acc:MGI:1915269]) HSP 1 Score: 69.3218 bits (168), Expect = 9.648e-14 Identity = 38/110 (34.55%), Postives = 67/110 (60.91%), Query Frame = 1 Query: 130 LNIFGLLATELNNIVKTMLTDKNLQLDNLVMIPVALNPNPDQNLINLTQDRIKAFTYEVPPQYLRTLLDPKVQHARKEQLIKASNLSAEIVSKQNAS-NKVVDSALKELS 456 L+ F LL+ +LN + K + +K N V+IP+ L+P+ D++L+ T+ R+ F++EV P +LRT DP+V+ K+ A+ + A+ KQ S NK+ + L+++S Sbjct: 62 LDSFALLSGQLNTLNKVLKHEKTPLFRNQVIIPLVLSPDRDEDLMRQTEGRVPVFSHEVVPDHLRTKPDPEVEEQEKQLTTDAARIGADAAQKQIQSLNKMCSNLLEKIS 171
BLAST of Mediator of RNA polymerase II transcription subunit 8 vs. UniProt/SwissProt
Match: sp|Q7Q6D6|MED8_ANOGA (Mediator of RNA polymerase II transcription subunit 8 OS=Anopheles gambiae OX=7165 GN=MED8 PE=3 SV=2) HSP 1 Score: 80.4925 bits (197), Expect = 6.258e-17 Identity = 48/152 (31.58%), Postives = 82/152 (53.95%), Query Frame = 1 Query: 118 WSKYLNIFGLLATELNNIVKTMLTDKNLQLDNLVMIPVALNPNPDQNLINLTQDRIKAFTYEVPPQYLRTLLDPKVQHARKEQLIKASNLSAEIVSKQNAS-NKVVDSALKELSSLKNQIDVD-NTEKAIKQ-NTMTEIQELFNCMSNGKGL 564 W +L+ F L+++ L ++K + T+ L NL ++P+ L P D+ L+ LT+ R+ F++++ P YLRT DP + + KA+NL+ E KQ A NKV+ +S K + + +T I+Q ++M + Q L + G GL Sbjct: 42 WPTFLDNFALISSHLTGLMKILSTEIGTPLRNLTVLPLMLTPERDEALLQLTEGRVPIFSHDLAPDYLRTKPDPGAESRQAAHEAKANNLTVEASMKQVAQYNKVISHVWDIISKAKEDWENESSTRPGIQQTSSMADTQALVAAVGLGNGL 193
BLAST of Mediator of RNA polymerase II transcription subunit 8 vs. UniProt/SwissProt
Match: sp|A1ZBT5|MED8_DROME (Mediator of RNA polymerase II transcription subunit 8 OS=Drosophila melanogaster OX=7227 GN=MED8 PE=2 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 6.405e-16 Identity = 45/155 (29.03%), Postives = 85/155 (54.84%), Query Frame = 1 Query: 118 WSKYLNIFGLLATELNNIVKTMLTDKNLQLDNLVMIPVALNPNPDQNLINLTQDRIKAFTYEVPPQYLRTLLDPKVQHARKEQLIKASNLSAEIVSKQ-NASNKVVDSALKELSSLKNQIDVDNTEKAIKQNT--MTEIQELFNCMSNGKGLKLS 573 W +L+ F ++++ L + K + ++ L N ++P+ ++ + D LIN+T+ R+ F++++ P YLRT DP + + KA+NL+ + KQ NKVV L +S + + +++++ + Q T M + Q L + GKGLKL+ Sbjct: 42 WPTFLDNFAIISSHLTGLTKILAKEQCPPLRNRTVLPLLVSMDRDDTLINITEGRVPVFSHDIVPDYLRTRPDPITEQKMLQNEQKAANLTNDAAMKQVTQYNKVVSHVLDMVSKAREEWEIESSSRTGIQQTSSMADTQLLVAAVGMGKGLKLT 196
BLAST of Mediator of RNA polymerase II transcription subunit 8 vs. UniProt/SwissProt
Match: sp|Q6NYT1|MED8_DANRE (Mediator of RNA polymerase II transcription subunit 8 OS=Danio rerio OX=7955 GN=med8 PE=2 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 7.822e-16 Identity = 48/154 (31.17%), Postives = 85/154 (55.19%), Query Frame = 1 Query: 118 WSKYLNIFGLLATELNNIVKTMLTDKNLQLDNLVMIPVALNPNPDQNLINLTQDRIKAFTYEVPPQYLRTLLDPKVQHARKEQLIKASNLSAEIVSKQ-NASNKVVDSALKELSSLKNQIDVDNTEKAIKQNTMT----EIQELFNCMSNGKGL 564 W L+ F L++ +LN I K + +K + V+IP+ L+P+ D+ L LT+ R+ F++E+ P +LRT DP+V+ K +A+ + E+ KQ A NK+ + L++L++ + D D+ A++QN + + L + GKGL Sbjct: 43 WPSVLDNFALISGQLNTINKLLRNEKTPSYKSQVIIPLLLSPDRDEELAKLTEHRVPVFSHEIVPDHLRTKPDPEVEEQEKHLSAEAARIGPEVAQKQIQALNKLCSNLLEKLNNPRE--DRDSETSALRQNKPSFNPADTNALVAAVGFGKGL 194
BLAST of Mediator of RNA polymerase II transcription subunit 8 vs. UniProt/SwissProt
Match: sp|Q6DD30|MED8B_XENLA (Mediator of RNA polymerase II transcription subunit 8-B OS=Xenopus laevis OX=8355 GN=med8-b PE=2 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 8.974e-16 Identity = 47/150 (31.33%), Postives = 84/150 (56.00%), Query Frame = 1 Query: 118 WSKYLNIFGLLATELNNIVKTMLTDKNLQLDNLVMIPVALNPNPDQNLINLTQDRIKAFTYEVPPQYLRTLLDPKVQHARKEQLIKASNLSAEIVSKQNAS-NKVVDSALKELSSLKNQIDVDNTEKAIKQNTMTEIQELFNCMSNGKGL 564 W L+ F LL+ +LN + K + +K L N V+IP+ L+P+ D+ ++ LT+ R+ F++EV P +LRT DP V+ K+ A+ L++E KQ S NK+ + L ++S + + ++ + + + T+ L ++ GKGL Sbjct: 42 WPSVLDSFALLSGQLNTLNKVLKNEKTPLLRNQVIIPLLLSPDRDEEIMRLTEGRVPVFSHEVVPDHLRTKPDPDVEELEKQISADATRLTSEAAQKQVQSMNKMCSNLLDKISKEERESELGSLRQNKQTFNPTDTNALVAAVAFGKGL 191
BLAST of Mediator of RNA polymerase II transcription subunit 8 vs. UniProt/SwissProt
Match: sp|Q08BU1|MED8_XENTR (Mediator of RNA polymerase II transcription subunit 8 OS=Xenopus tropicalis OX=8364 GN=med8 PE=2 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 1.091e-15 Identity = 46/150 (30.67%), Postives = 85/150 (56.67%), Query Frame = 1 Query: 118 WSKYLNIFGLLATELNNIVKTMLTDKNLQLDNLVMIPVALNPNPDQNLINLTQDRIKAFTYEVPPQYLRTLLDPKVQHARKEQLIKASNLSAEIVSKQNAS-NKVVDSALKELSSLKNQIDVDNTEKAIKQNTMTEIQELFNCMSNGKGL 564 W L+ F LL+ +LN + K + +K L N V+IP+ L+P+ D+ ++ LT+ R+ F++EV P +LRT DP V+ K+ +A+ +++E KQ S NK+ + L ++S + + ++ + + + T+ L ++ GKGL Sbjct: 42 WPSVLDSFALLSGQLNTLNKVLKNEKTPLLRNQVIIPLLLSPDRDEEIMRLTEGRVPVFSHEVVPDHLRTKPDPDVEELEKQLSAEAARITSEAAQKQVQSMNKMCSNLLDKISKEERESELGSLRQNKQTFNPTDTNALVAAVAFGKGL 191
BLAST of Mediator of RNA polymerase II transcription subunit 8 vs. TrEMBL
Match: A0A183A961 (Mediator of RNA polymerase II transcription subunit 8 OS=Echinostoma caproni OX=27848 GN=MED8 PE=3 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 1.486e-23 Identity = 58/157 (36.94%), Postives = 96/157 (61.15%), Query Frame = 1 Query: 109 NHEWSKYLNIFGLLATELNNIVKTMLTDKNLQLDNLVMIPVALNPNPDQNLINLTQDRIKAFTYEVPPQYLRTLLDPKVQHARKEQLIKASNLSAEIVSK-QNASNKVVDSALKELSSLKNQIDVDNTEKAIKQNTMTEIQELFNCM----SNGKGL 564 N +W +YL+ L A+EL+ I K + +D+ + LV+ P LNP PD L T++R+ F ++ PQYLRT LDPK++ + QL +AS++ +E ++K N +N+ +DS+LKE++ LK +++ D ++ +QN T + N M + GKGL Sbjct: 39 NCDWPRYLSTLALCASELSEIRKVLESDRFVSEHTLVLTPTLLNPEPDPTLAKATEERLSLFNHDTVPQYLRTKLDPKLETQCQAQLNRASSMPSEQLTKLVNLANRAIDSSLKEVNLLKQELEADFSD---RQNKSTSSADDLNAMVAAITLGKGL 192
BLAST of Mediator of RNA polymerase II transcription subunit 8 vs. TrEMBL
Match: A0A0X3P6B3 (Mediator of RNA polymerase II transcription subunit 8 OS=Schistocephalus solidus OX=70667 GN=MED8 PE=3 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 1.975e-23 Identity = 56/138 (40.58%), Postives = 85/138 (61.59%), Query Frame = 1 Query: 100 RISNHEWSKYLNIFGLLATELNNIVKTMLTDKNLQLDNLVMIPVALNPNPDQNLINLTQDRIKAFTYEVPPQYLRTLLDPKVQHARKEQLIKASNLSAEIVSK-QNASNKVVDSALKELSSLKNQIDVDNTEKAIKQN 510 + + +W KYLN GL A+EL I K + T++ +LV+ PV LNP PD L T +R+ F ++ PQYLRT L P+V+ R Q KAS + E +K N SN+++DS LKE+++LK ++++D +EK K + Sbjct: 36 QCDSCDWPKYLNTLGLCASELVEIRKVLETERFSLAQSLVLTPVRLNPEPDPALAKATDERLPRFDHDTAPQYLRTKLAPQVESQRMAQNAKASAILPEQATKLVNLSNRLLDSGLKEVNALKQELEMDLSEKTFKSS 173
BLAST of Mediator of RNA polymerase II transcription subunit 8 vs. TrEMBL
Match: A0A3P7CF65 (Mediator of RNA polymerase II transcription subunit 8 OS=Schistocephalus solidus OX=70667 GN=MED8 PE=3 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 2.171e-23 Identity = 56/135 (41.48%), Postives = 84/135 (62.22%), Query Frame = 1 Query: 109 NHEWSKYLNIFGLLATELNNIVKTMLTDKNLQLDNLVMIPVALNPNPDQNLINLTQDRIKAFTYEVPPQYLRTLLDPKVQHARKEQLIKASNLSAEIVSK-QNASNKVVDSALKELSSLKNQIDVDNTEKAIKQN 510 + +W KYLN GL A+EL I K + T++ +LV+ PV LNP PD L T +R+ F ++ PQYLRT L P+V+ R Q KAS + E +K N SN+++DS LKE+++LK ++++D +EK K + Sbjct: 18 SCDWPKYLNTLGLCASELVEIRKVLETERFSLAQSLVLTPVRLNPEPDPALAKATDERLPRFDHDTAPQYLRTKLAPQVESQRMAQNSKASAILPEQATKLVNLSNRLLDSGLKEVNALKQELEMDLSEKTFKSS 152
BLAST of Mediator of RNA polymerase II transcription subunit 8 vs. TrEMBL
Match: A0A183SJ50 (Mediator of RNA polymerase II transcription subunit 8 OS=Schistocephalus solidus OX=70667 GN=MED8 PE=3 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 2.441e-23 Identity = 56/135 (41.48%), Postives = 84/135 (62.22%), Query Frame = 1 Query: 109 NHEWSKYLNIFGLLATELNNIVKTMLTDKNLQLDNLVMIPVALNPNPDQNLINLTQDRIKAFTYEVPPQYLRTLLDPKVQHARKEQLIKASNLSAEIVSK-QNASNKVVDSALKELSSLKNQIDVDNTEKAIKQN 510 + +W KYLN GL A+EL I K + T++ +LV+ PV LNP PD L T +R+ F ++ PQYLRT L P+V+ R Q KAS + E +K N SN+++DS LKE+++LK ++++D +EK K + Sbjct: 18 SCDWPKYLNTLGLCASELVEIRKVLETERFSLAQSLVLTPVRLNPEPDPALAKATDERLPRFDHDTAPQYLRTKLAPQVESQRMAQNSKASAILPEQATKLVNLSNRLLDSGLKEVNALKQELEMDLSEKTFKSS 152
BLAST of Mediator of RNA polymerase II transcription subunit 8 vs. TrEMBL
Match: A0A3P7LJM4 (Mediator of RNA polymerase II transcription subunit 8 OS=Dibothriocephalus latus OX=60516 GN=MED8 PE=3 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 2.743e-23 Identity = 58/153 (37.91%), Postives = 90/153 (58.82%), Query Frame = 1 Query: 112 HEWSKYLNIFGLLATELNNIVKTMLTDKNLQLDNLVMIPVALNPNPDQNLINLTQDRIKAFTYEVPPQYLRTLLDPKVQHARKEQLIKASNLSAEIVSK-QNASNKVVDSALKELSSLKNQIDVDNTEKAIKQNT-MTEIQELFNCMSNGKGL 564 ++W KYLN GL A+EL I K + +++ LV+ PV LNP PD L T +R+ F ++ PQYLRT L P+V+ R Q KAS + E +K N SN+++DS LKE+++LK +++ D +EK K + + ++ L ++ G L Sbjct: 40 YDWPKYLNTLGLCASELVEIRKVLESERFSLAQALVLTPVRLNPEPDPALAKATDERLPRFDHDTAPQYLRTKLAPQVESQRMAQNAKASAIPPEQATKLVNLSNRLLDSGLKEVNALKQELETDLSEKTFKSSVNLDDLFTLVAAITTGANL 192
BLAST of Mediator of RNA polymerase II transcription subunit 8 vs. Ensembl Cavefish
Match: med8 (mediator complex subunit 8 [Source:NCBI gene;Acc:103028217]) HSP 1 Score: 83.1889 bits (204), Expect = 1.052e-18 Identity = 50/154 (32.47%), Postives = 87/154 (56.49%), Query Frame = 1 Query: 118 WSKYLNIFGLLATELNNIVKTMLTDKNLQLDNLVMIPVALNPNPDQNLINLTQDRIKAFTYEVPPQYLRTLLDPKVQHARKEQLIKASNLSAEIVSKQ-NASNKVVDSALKELSSLKNQIDVDNTEKAIKQNT----MTEIQELFNCMSNGKGL 564 W L+ F LL+ +LN + K + +K N V+IP+ L+P+ D++L LT+ R+ F++E+ P +LRT DP+V+ K+ ++A+ + E+ KQ NK+ S L++L++ ++ D + AI+QN T+ L + GKGL Sbjct: 43 WPSVLDNFALLSGQLNTVNKLLRNEKTPSYRNQVIIPLLLSPDRDEDLAKLTEQRVPVFSHEIVPDHLRTKPDPEVEEQEKQLSVEAARIGPEVAQKQIQTMNKLCSSLLEKLNNPRD--DREAETAAIRQNKPSFNPTDTTALVAAVGFGKGL 194
BLAST of Mediator of RNA polymerase II transcription subunit 8 vs. Ensembl Sea Lamprey
Match: med8 (mediator complex subunit 8 [Source:NCBI gene;Acc:404615]) HSP 1 Score: 82.4185 bits (202), Expect = 4.189e-19 Identity = 47/152 (30.92%), Postives = 86/152 (56.58%), Query Frame = 1 Query: 118 WSKYLNIFGLLATELNNIVKTMLTDKNLQLDNLVMIPVALNPNPDQNLINLTQDRIKAFTYEVPPQYLRTLLDPKVQHARKEQLIKASNLSAEIVSKQNAS-NKVVDSALKELSSLKNQIDVDNTEKAIKQNTM--TEIQELFNCMSNGKGL 564 W L+ F LL+ +LN++ K + DK L +++P+ L+P+ D L+ +T+ R+ F+++V P +LRT DP V+ K+ ++A+ L+ ++ K AS NK+ +S L L+S ++ D D++ ++T + L + GKGL Sbjct: 42 WPSMLDSFALLSGQLNSLNKLLRNDKTPCLRGQIIMPLLLSPDRDDELMKMTEGRVPVFSHDVVPDHLRTKPDPAVEEQEKQMSLEAARLTPDMAQKHMASMNKMCNSLLDRLNSTRDDRDGDSSTLRHSKHTFNPADTNALVAAVGFGKGL 193
BLAST of Mediator of RNA polymerase II transcription subunit 8 vs. Ensembl Nematostella
Match: EDO34499 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SP88]) HSP 1 Score: 76.6406 bits (187), Expect = 6.739e-17 Identity = 47/155 (30.32%), Postives = 88/155 (56.77%), Query Frame = 1 Query: 118 WSKYLNIFGLLATELNNIVKTMLTDKNLQLDNLVMIPVALNPNPDQNLINLTQDRIKAFTYEVPPQYLRTLLDPKVQHARKEQLIKASNLSAEIVSKQ-NASNKVVDSALKELSSLKNQIDVD-NTEKAIKQNTMTEIQELFNCMSNGKGLKLSK 576 W L+ F LL+ +++ + K + DK L NLV++PV + D+ L+ ++Q RI AF +EV P +LRT +P+V+ A + ++ +++++ E KQ N N+++ + ++S K + + N+ +T +I L ++ GKGLK +K Sbjct: 42 WPSVLDNFALLSGQVSTLTKLLKGDKTPALRNLVLLPVLVQQEQDEELVKISQGRIPAFNHEVVPDHLRTKYEPEVEEAEQSLVVASASITQENAQKQINHLNELLTTLTDIITSAKEDWEGEQNSASRSTSSTNPDIGALVAAVTFGKGLKPNK 196
BLAST of Mediator of RNA polymerase II transcription subunit 8 vs. Ensembl Medaka
Match: med8 (mediator complex subunit 8 [Source:NCBI gene;Acc:101172236]) HSP 1 Score: 77.7962 bits (190), Expect = 1.212e-16 Identity = 48/154 (31.17%), Postives = 85/154 (55.19%), Query Frame = 1 Query: 118 WSKYLNIFGLLATELNNIVKTMLTDKNLQLDNLVMIPVALNPNPDQNLINLTQDRIKAFTYEVPPQYLRTLLDPKVQHARKEQLIKASNLSAEIVSKQ-NASNKVVDSALKELSSLKNQIDVDNTEKAIKQNTM----TEIQELFNCMSNGKGL 564 W L+ F LL+ +LN I K + +K + V+IP+ L+P+ D++L LT+ R+ F++E+ P +LRT DP+V+ K+ +A + E+ K A NK+ + L++L++ + D + A++QN T+ L ++ GKGL Sbjct: 54 WPSVLDNFALLSGQLNTINKLLRNEKTPAFRSQVIIPLLLSPDRDEDLAKLTEQRVPVFSHEIVPDHLRTKPDPEVEEQEKQLSAEAVRIGPELAQKHIQALNKLCSNLLEKLNNPRE--DREGDASAVRQNKASFNPTDTSALVAAVAFGKGL 205
BLAST of Mediator of RNA polymerase II transcription subunit 8 vs. Ensembl Medaka
Match: med8 (mediator complex subunit 8 [Source:NCBI gene;Acc:101172236]) HSP 1 Score: 75.0998 bits (183), Expect = 8.968e-16 Identity = 47/154 (30.52%), Postives = 85/154 (55.19%), Query Frame = 1 Query: 118 WSKYLNIFGLLATELNNIVKTMLTDKNLQLDNLVMIPVALNPNPDQNLINLTQDRIKAFTYEVPPQYLRTLLDPKVQHARKEQLIKASNLSAEIVSKQ-NASNKVVDSALKELSSLKNQIDVDNTEKAIKQNTM----TEIQELFNCMSNGKGL 564 W L+ F LL+ +LN I K + +K + V+IP+ L+P+ D++L LT+ R+ F++E+ P +LRT DP+V+ K+ +A + E+ K A NK+ + L++L++ + + D +++QN T+ L ++ GKGL Sbjct: 43 WPSVLDNFALLSGQLNTINKLLRNEKTPAFRSQVIIPLLLSPDRDEDLAKLTEQRVPVFSHEIVPDHLRTKPDPEVEEQEKQLSAEAVRIGPELAQKHIQALNKLCSNLLEKLNNPREDREGD---ASVRQNKASFNPTDTSALVAAVAFGKGL 193
BLAST of Mediator of RNA polymerase II transcription subunit 8 vs. Planmine SMEST
Match: SMESG000080873.1 (SMESG000080873.1) HSP 1 Score: 317.39 bits (812), Expect = 3.392e-111 Identity = 156/160 (97.50%), Postives = 159/160 (99.38%), Query Frame = 1 Query: 97 FRISNHEWSKYLNIFGLLATELNNIVKTMLTDKNLQLDNLVMIPVALNPNPDQNLINLTQDRIKAFTYEVPPQYLRTLLDPKVQHARKEQLIKASNLSAEIVSKQNASNKVVDSALKELSSLKNQIDVDNTEKAIKQNTMTEIQELFNCMSNGKGLKLSK 576 F+ ++HEWSKYLNIFGLLATELNNIVKTMLTDKNLQLDNLVMIPVALNPNPDQNLINLTQDRIKAFTYEVPPQYLRTLLDPKVQHARKEQLIKASNLSAEIVSKQNASNKVVDSALKELSSLKNQIDVDNTEKAIKQNTMTEIQELFNCMSNGKGLKLSK Sbjct: 30 FQFTDHEWSKYLNIFGLLATELNNIVKTMLTDKNLQLDNLVMIPVALNPNPDQNLINLTQDRIKAFTYEVPPQYLRTLLDPKVQHARKEQLIKASNLSAEIVSKQNASNKVVDSALKELSSLKNQIDVDNTEKAIKQNTMTEIQELFNCMSNGKGLKLSK 189 HSP 2 Score: 66.6254 bits (161), Expect = 2.221e-13 Identity = 31/31 (100.00%), Postives = 31/31 (100.00%), Query Frame = 2 Query: 17 MNKECDLDPLILSLFKFREKVVQLRSCLEFQ 109 MNKECDLDPLILSLFKFREKVVQLRSCLEFQ Sbjct: 1 MNKECDLDPLILSLFKFREKVVQLRSCLEFQ 31
BLAST of Mediator of RNA polymerase II transcription subunit 8 vs. Planmine SMEST
Match: SMESG000080873.1 (SMESG000080873.1) HSP 1 Score: 265.003 bits (676), Expect = 2.612e-91 Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 1 Query: 181 MLTDKNLQLDNLVMIPVALNPNPDQNLINLTQDRIKAFTYEVPPQYLRTLLDPKVQHARKEQLIKASNLSAEIVSKQNASNKVVDSALKELSSLKNQIDVDNTEKAIKQNTMTEIQELFNCMSNGKGLKLSK 576 MLTDKNLQLDNLVMIPVALNPNPDQNLINLTQDRIKAFTYEVPPQYLRTLLDPKVQHARKEQLIKASNLSAEIVSKQNASNKVVDSALKELSSLKNQIDVDNTEKAIKQNTMTEIQELFNCMSNGKGLKLSK Sbjct: 1 MLTDKNLQLDNLVMIPVALNPNPDQNLINLTQDRIKAFTYEVPPQYLRTLLDPKVQHARKEQLIKASNLSAEIVSKQNASNKVVDSALKELSSLKNQIDVDNTEKAIKQNTMTEIQELFNCMSNGKGLKLSK 132 The following BLAST results are available for this feature:
BLAST of Mediator of RNA polymerase II transcription subunit 8 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 2
BLAST of Mediator of RNA polymerase II transcription subunit 8 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of Mediator of RNA polymerase II transcription subunit 8 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 1
BLAST of Mediator of RNA polymerase II transcription subunit 8 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 1
BLAST of Mediator of RNA polymerase II transcription subunit 8 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 2
BLAST of Mediator of RNA polymerase II transcription subunit 8 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 2
BLAST of Mediator of RNA polymerase II transcription subunit 8 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of Mediator of RNA polymerase II transcription subunit 8 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of Mediator of RNA polymerase II transcription subunit 8 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 1
BLAST of Mediator of RNA polymerase II transcription subunit 8 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 1
BLAST of Mediator of RNA polymerase II transcription subunit 8 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of Mediator of RNA polymerase II transcription subunit 8 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 1
BLAST of Mediator of RNA polymerase II transcription subunit 8 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 2
BLAST of Mediator of RNA polymerase II transcription subunit 8 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 2
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30013672 ID=SMED30013672|Name=Mediator of RNA polymerase II transcription subunit 8|organism=Schmidtea mediterranea sexual|type=transcript|length=708bpback to top protein sequence of SMED30013672-orf-1 >SMED30013672-orf-1 ID=SMED30013672-orf-1|Name=SMED30013672-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=133bp MLTDKNLQLDNLVMIPVALNPNPDQNLINLTQDRIKAFTYEVPPQYLRTLback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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