SMED30013624
Overview
Neoblast Clusters
Zeng et. al., 2018
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny AppEmbryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30013624 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 2
Alignments
SMED30013624 aligns in the following genomic locations:
Homology
BLAST of SMED30013624 vs. Planmine SMEST
Match: SMESG000032167.1 (SMESG000032167.1) HSP 1 Score: 437.958 bits (1125), Expect = 1.149e-147 Identity = 214/261 (81.99%), Postives = 233/261 (89.27%), Query Frame = 2 Query: 5 NVTSNSILFQWKQQKNL----KYEIIVQPNGTIYQTNETQFTLRNLQPCQRYCIQVRAYSDFSKSELSKEKCQNTNIAYFDEVILSPVVYNGFPVILEWTYQNTLGCSDIFFNVVYYPTYRENIIYTNKTNRKELQLDKIEHDLIYFAKVKPEYDGMFGNFSKETLILVTSKPVKPIEIVVFNVTSTSFQIRWKMPREVEFPNKYEIILLHPNKIIYKTKQTHFTLDNLLPCTEYCFQISTFNFFSESTKSKKICQNTNIS 775 VT+N I W+ ++ L ++E++V P G IY+T ET T NL PC+ YC QVR ++ ++ SELS++KCQ+T IAYFDEVILSPVVYNGFPVILEWTYQNTLGCSDIFFNVVYYPTYRENIIYTN+TNRKELQLDKIEHDLIYFAKVKPEYDGMFGNFSKE LILVTSKPVKPIEIVVFNVTSTSFQIRWKMP EVEFPNKYEIILLHPNKIIYKTKQTHFTLDNLLPCTEYCFQISTFNFFSESTKSKKICQNTNI+ Sbjct: 367 GVTTNMIEIYWRPEEKLGLADEFEVLVIPIGAIYRTKETDLTFVNLLPCRTYCFQVRIFNFWTSSELSEKKCQSTKIAYFDEVILSPVVYNGFPVILEWTYQNTLGCSDIFFNVVYYPTYRENIIYTNRTNRKELQLDKIEHDLIYFAKVKPEYDGMFGNFSKEMLILVTSKPVKPIEIVVFNVTSTSFQIRWKMPPEVEFPNKYEIILLHPNKIIYKTKQTHFTLDNLLPCTEYCFQISTFNFFSESTKSKKICQNTNIT 627 HSP 2 Score: 224.557 bits (571), Expect = 6.738e-67 Identity = 121/262 (46.18%), Postives = 162/262 (61.83%), Query Frame = 2 Query: 5 NVTSNSILFQWKQQKNL----KYEIIV-QPNGTIYQTNETQFTLRNLQPCQRYCIQVRAYSDFSKSELSKEKCQNTNIAYFDEVILSPVVYNGFPVILEWTYQNTLGCSDIFFNVVYYPTYRENIIYTNKTNRKELQLDKIEHDLIYFAKVKPEYDGMFGNFSKETLILVTSKPVKPIEIVVFNVTSTSFQIRWKMPREVEFPNKYEIILLHPNKIIYKTKQTHFTLDNLLPCTEYCFQISTFNFFSESTKSKKICQNTNIS 775 NVTS S +WK + KYEII+ PN IY+T +T FTL NL PC YC Q+ ++ FS+S SK+ CQNTNI FDEV+L P+ P +L WTYQNTL CS I F + YY + IY+ TN ++L++I++ YFAKVKPE+DG+FGNFS+E I++ P P I V S +I W E+ + YEI++L P Y+TKQT+FTL+NLLPC +YCF I +FN S S +IC+ TN++ Sbjct: 549 NVTSTSFQIRWKMPPEVEFPNKYEIILLHPNKIIYKTKQTHFTLDNLLPCTEYCFQISTFNFFSESTKSKKICQNTNITLFDEVVLKPIESTQLPAVLYWTYQNTLNCSHIIFYIEYYLENNKKNIYSISTNDTMVKLEQIKYKTKYFAKVKPEFDGLFGNFSEELEIVINKMPETP-SITKIEVASKWIRISWNSFEEMGPEDGYEIVMLFPKTSTYRTKQTNFTLENLLPCRKYCFGIRSFNLVGISNLSMEICEKTNLT 809 HSP 3 Score: 214.927 bits (546), Expect = 1.656e-63 Identity = 113/254 (44.49%), Postives = 161/254 (63.39%), Query Frame = 2 Query: 56 KYEIIVQ-PNGTIYQTNETQFTLRNLQPCQRYCIQVRAYSDFSKSELSKEKCQNTNIA-------------YFDEVILSPVVYNGFPVILEWTYQNTLGCSDIFFNVVYYPTYRENIIYTNKTNRKELQLDKIEHDLIYFAKVKPEYDGMFGNFSKETLILVTSKPVKPIEIVVFNVTSTSFQIRWKMPREVEFPNKYEIILLHPNKIIYKTKQTHFTLDNLLPCTEYCFQISTFNFFSESTKSKKICQNTNIS 775 +YEII++ PN IY+T +T FTL NL PC YC Q+ ++ F +S+ SK+ Q TNI+ FDEV+L P+ P +L WTYQNTL CS+I F + YY + IY+ TN ++L++I++ YFAKVKPE+DG+FGNFS+E I++ P P I V +++T +I W+ P+++E +KYEI+++H KI Y+T +T F LDNLL C +YCF I FN +S SK+ICQNT I+ Sbjct: 10 EYEIILRHPNKIIYKTKQTHFTLDNLLPCTEYCFQISTFNFFGESKKSKKIYQKTNISIKTIQNIIYDNLVLFDEVVLKPIESTQLPAVLYWTYQNTLNCSNIIFYIEYYLENNKKNIYSISTNDTMVKLEQIKYKTKYFAKVKPEFDGLFGNFSEELEIVINKMPDPPSNIKVTALSTTFIEISWESPKDIESTDKYEIVVIHSEKITYQTYKTKFKLDNLLTCRQYCFAIQVFNKLGKSELSKEICQNTKIA 263 HSP 4 Score: 196.052 bits (497), Expect = 1.073e-56 Identity = 110/266 (41.35%), Postives = 165/266 (62.03%), Query Frame = 2 Query: 2 VNVTSNSILF---QWKQQKNL----KYEIIVQPNGTI-YQTNETQFTLRNLQPCQRYCIQVRAYSDFSKSELSKEKCQNTNIAYFDEVILSPVVYNGFPVILEWTYQNTLGCSDIFFNVVYYPTYRENIIYTNKTNRKELQLDKIEHDLIYFAKVKPEYDGMFGNFSKETLILVTSKPVKPIEIVVFNVTSTSFQIRWKMPREVEFPNKYEIILLHPNKIIYKTKQTHFTLDNLLPCTEYCFQISTFNFFSESTKSKKICQNTNIS 775 + VT+ S F W+ K++ KYEI+V + I YQT +T+F L NL C++YC ++ ++ KSELSKE CQNT IA FDEV L+PV PV LE +Y NTL CS+I F V YY + +Y TN ++ ++E+++ Y+ K + EY+GMF N+SKE IL+T P+ P ++ V VT+ +I W+ ++ +++E++++ P IY+TK+T T NLLPC YCFQ+ FNF++ S S+K CQ+T I+ Sbjct: 181 IKVTALSTTFIEISWESPKDIESTDKYEIVVIHSEKITYQTYKTKFKLDNLLTCRQYCFAIQVFNKLGKSELSKEICQNTKIASFDEVTLNPVNSQKLPVTLEVSYLNTLNCSNILFIVKYYSEIDSHPVYF-ITNETATEIQEMEYNIKYYVKARCEYEGMFSNYSKELEILITKVPITPSQVKVSGVTTNMIEIYWRPEEKLGLADEFEVLVI-PIGAIYRTKETDLTFVNLLPCRTYCFQVRIFNFWTSSELSEKKCQSTKIA 444 HSP 5 Score: 140.198 bits (352), Expect = 3.372e-37 Identity = 81/192 (42.19%), Postives = 113/192 (58.85%), Query Frame = 2 Query: 2 VNVTSNSILFQWKQQKNLK----YEIIVQ-PNGTIYQTNETQFTLRNLQPCQRYCIQVRAYSDFSKSELSKEKCQNTNIAYFDEVILSPVVYNGFPVILEWTYQNTLGCSDIFFNVVYYPTYRENIIYTNKTNRKELQLDKIEHDLIYFAKVKPEYDGMFGNFSKETLILVTSKPVK--PIEIVVFNVTSTS 556 + V S I W + + YEI++ P + Y+T +T FTL NL PC++YC +R+++ S LS E C+ TN+ FDEV+L P+ N FPV+L WTY NT CS I F V YY + IY+ TN+ E +L+KIE + Y KV+P+Y+ MFGNFSK L L K +K I FN+TS++ Sbjct: 730 IEVASKWIRISWNSFEEMGPEDGYEIVMLFPKTSTYRTKQTNFTLENLLPCRKYCFGIRSFNLVGISNLSMEICEKTNLTAFDEVVLKPLQDNSFPVVLSWTYINTSNCSGILFIVEYYSDKEDKDIYSITTNKTESELEKIEFNKKYAVKVRPKYEEMFGNFSK-ILELFIKKDIKWEKKTISTFNITSSA 920 HSP 6 Score: 122.479 bits (306), Expect = 4.629e-31 Identity = 59/67 (88.06%), Postives = 61/67 (91.04%), Query Frame = 2 Query: 575 MPREVEFPNKYEIILLHPNKIIYKTKQTHFTLDNLLPCTEYCFQISTFNFFSESTKSKKICQNTNIS 775 MP EVE+PN+YEIIL HPNKIIYKTKQTHFTLDNLLPCTEYCFQISTFNFF ES KSKKI Q TNIS Sbjct: 1 MPLEVEYPNEYEIILRHPNKIIYKTKQTHFTLDNLLPCTEYCFQISTFNFFGESKKSKKIYQKTNIS 67
BLAST of SMED30013624 vs. Planmine SMEST
Match: SMESG000032101.1 (SMESG000032101.1) HSP 1 Score: 261.922 bits (668), Expect = 1.644e-82 Identity = 144/261 (55.17%), Postives = 170/261 (65.13%), Query Frame = 2 Query: 5 NVTSNSILFQWKQQKNL----KYEIIVQPNGTIYQTNETQFTLRNLQPCQRYCIQVRAYSDFSKSELSKEKCQNTNIAYFDEVILSPVVYNGFPVILEWTYQNTLGCSDIFFNVVYYPTYRENIIYTNKTNRKELQLDKIEHDLIYFAKVKPEYDGMFGNFSKETLILVTSKPVKPIEIVVFNVTSTSFQIRWKMPREVEFPNKYEIILLHPNKIIYKTKQTHFTLDNLLPCTEYCFQISTFNFFSESTKSKKICQNTNIS 775 VT+N I W+ ++ L ++E++V P G IY+T ET T NL PC+ YC QVR ++ ++ SELS++KCQ+T I F +V LS + P IL+W Y+NT CS I F V YY + KE+ E + VT+KPVKPIEIVVFNVTSTSFQI WKMP EVEFPNKYEIILLHPNKIIYKTKQTHFTLDNLLPCTEYCFQISTFNFFSESTKSKKICQNTNI+ Sbjct: 111 GVTTNMIEIYWRPEEKLGLADEFEVLVIPIGAIYRTKETDLTFVNLLPCRTYCFQVRIFNFWTSSELSEKKCQSTKIGSFGQVTLSSIQTMTLPFILQWYYENTFNCSGISFLVHYY-------------SEKEI----------------------------ENIFSVTTKPVKPIEIVVFNVTSTSFQILWKMPPEVEFPNKYEIILLHPNKIIYKTKQTHFTLDNLLPCTEYCFQISTFNFFSESTKSKKICQNTNIT 330 HSP 2 Score: 217.238 bits (552), Expect = 1.379e-65 Identity = 118/262 (45.04%), Postives = 159/262 (60.69%), Query Frame = 2 Query: 5 NVTSNSILFQWKQQKNL----KYEIIV-QPNGTIYQTNETQFTLRNLQPCQRYCIQVRAYSDFSKSELSKEKCQNTNIAYFDEVILSPVVYNGFPVILEWTYQNTLGCSDIFFNVVYYPTYRENIIYTNKTNRKELQLDKIEHDLIYFAKVKPEYDGMFGNFSKETLILVTSKPVKPIEIVVFNVTSTSFQIRWKMPREVEFPNKYEIILLHPNKIIYKTKQTHFTLDNLLPCTEYCFQISTFNFFSESTKSKKICQNTNIS 775 NVTS S WK + KYEII+ PN IY+T +T FTL NL PC YC Q+ ++ FS+S SK+ CQNTNI FDE +L P+ P +L WTYQNTL CS+I F + YY + IY+ TN ++L++I++ YFA+VKP +DG+FGNFS+E I++ P P I V S +I W E+ + YEI++L P Y+TKQT+FTL NLLPC +YCF I +FN S S +IC+ TN++ Sbjct: 252 NVTSTSFQILWKMPPEVEFPNKYEIILLHPNKIIYKTKQTHFTLDNLLPCTEYCFQISTFNFFSESTKSKKICQNTNITLFDEAVLKPIESTQLPAVLYWTYQNTLNCSNIIFYIEYYLENNKKNIYSISTNDTMVKLEQIKYKTKYFARVKPIFDGLFGNFSEELEIVINKMPETP-SITKIEVASKWIRISWNPFEEMGPEDGYEIVMLFPKTSTYRTKQTNFTLQNLLPCRKYCFGIRSFNLVGISNLSMEICEKTNLT 512 HSP 3 Score: 124.02 bits (310), Expect = 1.102e-31 Identity = 66/160 (41.25%), Postives = 96/160 (60.00%), Query Frame = 2 Query: 2 VNVTSNSILFQWKQQKNLK----YEIIVQ-PNGTIYQTNETQFTLRNLQPCQRYCIQVRAYSDFSKSELSKEKCQNTNIAYFDEVILSPVVYNGFPVILEWTYQNTLGCSDIFFNVVYYPTYRENIIYTNKTNRKELQLDKIEHDLIYFAKVKPEYDGMF 466 + V S I W + + YEI++ P + Y+T +T FTL+NL PC++YC +R+++ S LS E C+ TN+ FDEV+L P+ + FPV+L WTY NT CS I F V YY + IY+ TN+ E +L+KIE + Y KV+P+Y+ MF Sbjct: 433 IEVASKWIRISWNPFEEMGPEDGYEIVMLFPKTSTYRTKQTNFTLQNLLPCRKYCFGIRSFNLVGISNLSMEICEKTNLTAFDEVVLKPLQDSSFPVVLSWTYINTSNCSGILFIVEYYSDKEDKDIYSIITNKTESELEKIEFNKKYAVKVRPKYEEMF 592 HSP 4 Score: 109.383 bits (272), Expect = 2.688e-29 Identity = 51/132 (38.64%), Postives = 85/132 (64.39%), Query Frame = 2 Query: 380 TNRKELQLDKIEHDLIYFAKVKPEYDGMFGNFSKETLILVTSKPVKPIEIVVFNVTSTSFQIRWKMPREVEFPNKYEIILLHPNKIIYKTKQTHFTLDNLLPCTEYCFQISTFNFFSESTKSKKICQNTNIS 775 TN ++ ++E+++ Y+ K + EY+GMF N+SKE IL+T P+ P ++ V VT+ +I W+ ++ +++E++++ P IY+TK+T T NLLPC YCFQ+ FNF++ S S+K CQ+T I Sbjct: 58 TNETATEIQEMEYNIKYYVKARCEYEGMFSNYSKELEILITKVPITPSQVKVSGVTTNMIEIYWRPEEKLGLADEFEVLVI-PIGAIYRTKETDLTFVNLLPCRTYCFQVRIFNFWTSSELSEKKCQSTKIG 188 HSP 5 Score: 38.1206 bits (87), Expect = 2.688e-29 Identity = 19/44 (43.18%), Postives = 25/44 (56.82%), Query Frame = 1 Query: 205 MSEYKYCLF**GDIEPCGLQWVSCNLGMDVSEYFRLF*YLLQCR 336 MS++K C D+EPC S +LG +SEYF LF Y L + Sbjct: 1 MSKHKNCFIRRSDLEPCQFTKASSHLGGVLSEYFELFKYSLHSK 44
BLAST of SMED30013624 vs. Planmine SMEST
Match: SMESG000032101.1 (SMESG000032101.1) HSP 1 Score: 261.536 bits (667), Expect = 2.963e-82 Identity = 144/261 (55.17%), Postives = 170/261 (65.13%), Query Frame = 2 Query: 5 NVTSNSILFQWKQQKNL----KYEIIVQPNGTIYQTNETQFTLRNLQPCQRYCIQVRAYSDFSKSELSKEKCQNTNIAYFDEVILSPVVYNGFPVILEWTYQNTLGCSDIFFNVVYYPTYRENIIYTNKTNRKELQLDKIEHDLIYFAKVKPEYDGMFGNFSKETLILVTSKPVKPIEIVVFNVTSTSFQIRWKMPREVEFPNKYEIILLHPNKIIYKTKQTHFTLDNLLPCTEYCFQISTFNFFSESTKSKKICQNTNIS 775 VT+N I W+ ++ L ++E++V P G IY+T ET T NL PC+ YC QVR ++ ++ SELS++KCQ+T I F +V LS + P IL+W Y+NT CS I F V YY + KE+ E + VT+KPVKPIEIVVFNVTSTSFQI WKMP EVEFPNKYEIILLHPNKIIYKTKQTHFTLDNLLPCTEYCFQISTFNFFSESTKSKKICQNTNI+ Sbjct: 111 GVTTNMIEIYWRPEEKLGLADEFEVLVIPIGAIYRTKETDLTFVNLLPCRTYCFQVRIFNFWTSSELSEKKCQSTKIGSFGQVTLSSIQTMTLPFILQWYYENTFNCSGISFLVHYY-------------SEKEI----------------------------ENIFSVTTKPVKPIEIVVFNVTSTSFQILWKMPPEVEFPNKYEIILLHPNKIIYKTKQTHFTLDNLLPCTEYCFQISTFNFFSESTKSKKICQNTNIT 330 HSP 2 Score: 216.853 bits (551), Expect = 2.242e-65 Identity = 118/262 (45.04%), Postives = 159/262 (60.69%), Query Frame = 2 Query: 5 NVTSNSILFQWKQQKNL----KYEIIV-QPNGTIYQTNETQFTLRNLQPCQRYCIQVRAYSDFSKSELSKEKCQNTNIAYFDEVILSPVVYNGFPVILEWTYQNTLGCSDIFFNVVYYPTYRENIIYTNKTNRKELQLDKIEHDLIYFAKVKPEYDGMFGNFSKETLILVTSKPVKPIEIVVFNVTSTSFQIRWKMPREVEFPNKYEIILLHPNKIIYKTKQTHFTLDNLLPCTEYCFQISTFNFFSESTKSKKICQNTNIS 775 NVTS S WK + KYEII+ PN IY+T +T FTL NL PC YC Q+ ++ FS+S SK+ CQNTNI FDE +L P+ P +L WTYQNTL CS+I F + YY + IY+ TN ++L++I++ YFA+VKP +DG+FGNFS+E I++ P P I V S +I W E+ + YEI++L P Y+TKQT+FTL NLLPC +YCF I +FN S S +IC+ TN++ Sbjct: 252 NVTSTSFQILWKMPPEVEFPNKYEIILLHPNKIIYKTKQTHFTLDNLLPCTEYCFQISTFNFFSESTKSKKICQNTNITLFDEAVLKPIESTQLPAVLYWTYQNTLNCSNIIFYIEYYLENNKKNIYSISTNDTMVKLEQIKYKTKYFARVKPIFDGLFGNFSEELEIVINKMPETP-SITKIEVASKWIRISWNPFEEMGPEDGYEIVMLFPKTSTYRTKQTNFTLQNLLPCRKYCFGIRSFNLVGISNLSMEICEKTNLT 512 HSP 3 Score: 131.339 bits (329), Expect = 3.385e-34 Identity = 69/163 (42.33%), Postives = 99/163 (60.74%), Query Frame = 2 Query: 2 VNVTSNSILFQWKQQKNLK----YEIIVQ-PNGTIYQTNETQFTLRNLQPCQRYCIQVRAYSDFSKSELSKEKCQNTNIAYFDEVILSPVVYNGFPVILEWTYQNTLGCSDIFFNVVYYPTYRENIIYTNKTNRKELQLDKIEHDLIYFAKVKPEYDGMFGNF 475 + V S I W + + YEI++ P + Y+T +T FTL+NL PC++YC +R+++ S LS E C+ TN+ FDEV+L P+ + FPV+L WTY NT CS I F V YY + IY+ TN+ E +L+KIE + Y KV+P+Y+ MFGNF Sbjct: 433 IEVASKWIRISWNPFEEMGPEDGYEIVMLFPKTSTYRTKQTNFTLQNLLPCRKYCFGIRSFNLVGISNLSMEICEKTNLTAFDEVVLKPLQDSSFPVVLSWTYINTSNCSGILFIVEYYSDKEDKDIYSIITNKTESELEKIEFNKKYAVKVRPKYEEMFGNF 595 HSP 4 Score: 108.997 bits (271), Expect = 2.870e-29 Identity = 51/132 (38.64%), Postives = 85/132 (64.39%), Query Frame = 2 Query: 380 TNRKELQLDKIEHDLIYFAKVKPEYDGMFGNFSKETLILVTSKPVKPIEIVVFNVTSTSFQIRWKMPREVEFPNKYEIILLHPNKIIYKTKQTHFTLDNLLPCTEYCFQISTFNFFSESTKSKKICQNTNIS 775 TN ++ ++E+++ Y+ K + EY+GMF N+SKE IL+T P+ P ++ V VT+ +I W+ ++ +++E++++ P IY+TK+T T NLLPC YCFQ+ FNF++ S S+K CQ+T I Sbjct: 58 TNETATEIQEMEYNIKYYVKARCEYEGMFSNYSKELEILITKVPITPSQVKVSGVTTNMIEIYWRPEEKLGLADEFEVLVI-PIGAIYRTKETDLTFVNLLPCRTYCFQVRIFNFWTSSELSEKKCQSTKIG 188 HSP 5 Score: 38.1206 bits (87), Expect = 2.870e-29 Identity = 19/44 (43.18%), Postives = 25/44 (56.82%), Query Frame = 1 Query: 205 MSEYKYCLF**GDIEPCGLQWVSCNLGMDVSEYFRLF*YLLQCR 336 MS++K C D+EPC S +LG +SEYF LF Y L + Sbjct: 1 MSKHKNCFIRRSDLEPCQFTKASSHLGGVLSEYFELFKYSLHSK 44
BLAST of SMED30013624 vs. Planmine SMEST
Match: SMESG000032101.1 (SMESG000032101.1) HSP 1 Score: 217.238 bits (552), Expect = 4.658e-66 Identity = 118/262 (45.04%), Postives = 159/262 (60.69%), Query Frame = 2 Query: 5 NVTSNSILFQWKQQKNL----KYEIIV-QPNGTIYQTNETQFTLRNLQPCQRYCIQVRAYSDFSKSELSKEKCQNTNIAYFDEVILSPVVYNGFPVILEWTYQNTLGCSDIFFNVVYYPTYRENIIYTNKTNRKELQLDKIEHDLIYFAKVKPEYDGMFGNFSKETLILVTSKPVKPIEIVVFNVTSTSFQIRWKMPREVEFPNKYEIILLHPNKIIYKTKQTHFTLDNLLPCTEYCFQISTFNFFSESTKSKKICQNTNIS 775 NVTS S WK + KYEII+ PN IY+T +T FTL NL PC YC Q+ ++ FS+S SK+ CQNTNI FDE +L P+ P +L WTYQNTL CS+I F + YY + IY+ TN ++L++I++ YFA+VKP +DG+FGNFS+E I++ P P I V S +I W E+ + YEI++L P Y+TKQT+FTL NLLPC +YCF I +FN S S +IC+ TN++ Sbjct: 199 NVTSTSFQILWKMPPEVEFPNKYEIILLHPNKIIYKTKQTHFTLDNLLPCTEYCFQISTFNFFSESTKSKKICQNTNITLFDEAVLKPIESTQLPAVLYWTYQNTLNCSNIIFYIEYYLENNKKNIYSISTNDTMVKLEQIKYKTKYFARVKPIFDGLFGNFSEELEIVINKMPETP-SITKIEVASKWIRISWNPFEEMGPEDGYEIVMLFPKTSTYRTKQTNFTLQNLLPCRKYCFGIRSFNLVGISNLSMEICEKTNLT 459 HSP 2 Score: 177.563 bits (449), Expect = 3.646e-51 Identity = 86/90 (95.56%), Postives = 88/90 (97.78%), Query Frame = 2 Query: 506 KPVKPIEIVVFNVTSTSFQIRWKMPREVEFPNKYEIILLHPNKIIYKTKQTHFTLDNLLPCTEYCFQISTFNFFSESTKSKKICQNTNIS 775 +PVKPIEIVVFNVTSTSFQI WKMP EVEFPNKYEIILLHPNKIIYKTKQTHFTLDNLLPCTEYCFQISTFNFFSESTKSKKICQNTNI+ Sbjct: 188 EPVKPIEIVVFNVTSTSFQILWKMPPEVEFPNKYEIILLHPNKIIYKTKQTHFTLDNLLPCTEYCFQISTFNFFSESTKSKKICQNTNIT 277 HSP 3 Score: 124.02 bits (310), Expect = 8.283e-32 Identity = 66/161 (40.99%), Postives = 96/161 (59.63%), Query Frame = 2 Query: 2 VNVTSNSILFQWKQQKNLK----YEIIVQ-PNGTIYQTNETQFTLRNLQPCQRYCIQVRAYSDFSKSELSKEKCQNTNIAYFDEVILSPVVYNGFPVILEWTYQNTLGCSDIFFNVVYYPTYRENIIYTNKTNRKELQLDKIEHDLIYFAKVKPEYDGMFG 469 + V S I W + + YEI++ P + Y+T +T FTL+NL PC++YC +R+++ S LS E C+ TN+ FDEV+L P+ + FPV+L WTY NT CS I F V YY + IY+ TN+ E +L+KIE + Y KV+P+Y+ MF Sbjct: 380 IEVASKWIRISWNPFEEMGPEDGYEIVMLFPKTSTYRTKQTNFTLQNLLPCRKYCFGIRSFNLVGISNLSMEICEKTNLTAFDEVVLKPLQDSSFPVVLSWTYINTSNCSGILFIVEYYSDKEDKDIYSIITNKTESELEKIEFNKKYAVKVRPKYEEMFD 540
BLAST of SMED30013624 vs. Planmine SMEST
Match: SMESG000032056.1 (SMESG000032056.1) HSP 1 Score: 215.312 bits (547), Expect = 1.238e-63 Identity = 110/198 (55.56%), Postives = 139/198 (70.20%), Query Frame = 2 Query: 2 VNVTSNSILFQWKQQKNL----KYEIIVQPNGTIYQTNETQFTLRNLQPCQRYCIQVRAYSDFSKSELSKEKCQNTNIAYFDEVILSPVVYNGFPVILEWTYQNTLGCSDIFFNVVYYPTYRENIIYTNKTNRKELQLDKIEHDLIYFAKVKPEYDGMFGNFSKETLILVTSKPVKPIEIVVFNVTSTSFQIRWKMPR 583 VN TSNSI QWKQ +N +YEII+QPNGT Y+ NETQFT+RNLQPC+RYC Q+RAYSDFSKSELSKE C T IA FD+VI S + Y+ PVIL+WTY+NTL C I F VVYYP E I+ KTN ++L+K+E++ IYFAKVKP+Y FG FS+ I+ +P P+ I V ++ +T +I W+ R Sbjct: 762 VNGTSNSIHLQWKQPRNFCLSYQYEIIMQPNGTKYKKNETQFTIRNLQPCRRYCFQIRAYSDFSKSELSKEICHETKIASFDKVIPSSLHYDKLPVILQWTYENTLNCFGISFQVVYYPKNDEKDIHYLKTNETRIKLEKVEYNKIYFAKVKPQYKEQFGEFSEVIEIITIKRPDPPLNIEVLDLFTTFIEISWESRR 959 HSP 2 Score: 203.756 bits (517), Expect = 1.968e-59 Identity = 114/266 (42.86%), Postives = 164/266 (61.65%), Query Frame = 2 Query: 2 VNVTSNSILF---QWKQQKNL----KYEIIVQPNGTI-YQTNETQFTLRNLQPCQRYCIQVRAYSDFSKSELSKEKCQNTNIAYFDEVILSPVVYNGFPVILEWTYQNTLGCSDIFFNVVYYPTYRENIIYTNKTNRKELQLDKIEHDLIYFAKVKPEYDGMFGNFSKETLILVTSKPVKPIEIVVFNVTSTSFQIRWKMPREVEFPNKYEIILLHPNKIIYKTKQTHFTLDNLLPCTEYCFQISTFNFFSESTKSKKICQNTNIS 775 + VT+ S F W+ K++ KYEI+V I YQT ET+F L NL C++YC +R ++ KSELSKE CQNT IA FDEV L+PV PV LE TY NTL CS+I F V YY + +Y TN ++ ++E+++ Y+ K + EY+GMF N+SKE IL+T P+ P ++ V VT+ +I W ++ +++E+++L P + IY+TK+T T+ NLLPC YCFQ+ FNF++ S S+K CQ+T I Sbjct: 395 IKVTALSTTFIEISWESPKDIESTDKYEIVVIHQEKITYQTYETKFKLDNLLTCRQYCFAIRVFNKLGKSELSKEICQNTKIASFDEVTLNPVKSQKLPVTLEVTYLNTLNCSNILFKVKYYSDMDSDPVYF-ITNETATEIQEMEYNIKYYVKARCEYEGMFSNYSKELEILITKVPITPSQVKVSGVTTNMIEIYWMPEEKLGLADEFEVLVL-PIRAIYRTKETILTIGNLLPCRTYCFQVRIFNFWTSSELSEKKCQSTKIG 658 HSP 3 Score: 201.06 bits (510), Expect = 1.680e-58 Identity = 111/261 (42.53%), Postives = 154/261 (59.00%), Query Frame = 2 Query: 5 NVTSNSILFQWKQQKNL----KYEIIVQPNGTIYQTNETQFTLRNLQPCQRYCIQVRAYSDFSKSELSKEKCQNTNIAYFDEVILSPVVYNGFPVILEWTYQNTLGCSDIFFNVVYYPTYRENIIYTNKTNRKELQLDKIEHDLIYFAKVKPEYDGMFGNFSKETLILVTSKPVKPIEIVVFNVTSTSFQIRWKMPREVEFPNKYEIILLHPNKIIYKTKQTHFTLDNLLPCTEYCFQISTFNFFSESTKSKKICQNTNIS 775 VT+N I W ++ L ++E++V P IY+T ET T+ NL PC+ YC QVR ++ ++ SELS++KCQ+T I F +V LS + P ILEW+Y+NT C I F V YY ++ T + E+ L K+E++ YFAKVKP++ G FSKE I +T PIE+ V N TS S ++WK PR +YEII + PN YK +T FT+ NL PC YCFQI ++ FS+S SK+IC T I+ Sbjct: 581 GVTTNMIEIYWMPEEKLGLADEFEVLVLPIRAIYRTKETILTIGNLLPCRTYCFQVRIFNFWTSSELSEKKCQSTKIGSFGQVTLSAIQTMTLPFILEWSYENTFNCFGISFLVHYYSEKEIENFFSVTTKKTEILLKKVEYERKYFAKVKPKFGREDGQFSKEIKIFITRDLQAPIELTVVNGTSNSIHLQWKQPRNFCLSYQYEII-MQPNGTKYKKNETQFTIRNLQPCRRYCFQIRAYSDFSKSELSKEICHETKIA 840 HSP 4 Score: 197.593 bits (501), Expect = 2.845e-57 Identity = 105/241 (43.57%), Postives = 155/241 (64.32%), Query Frame = 2 Query: 59 YEI-IVQPNGTIYQTNETQFTLRNLQPCQRYCIQVRAYSDFSKSELSKEKCQNTNIAYFDEVILSPVVYNGFPVILEWTYQNTLGCSDIFFNVVYYPTYRENI-IYTNKTNRKELQLDKIEHDLIYFAKVKPEYDGMFGNFSKETLILVTSKPVKPIEIVVFNVTSTSFQIRWKMPREVEFPNKYEIILLHPNKIIYKTKQTHFTLDNLLPCTEYCFQISTFNFFSESTKSKKICQNTNIS 775 YEI + Q IY++ +T F L N+ C++YC +RA++ + KSE+SKEKC N NI +V++ P+ PVIL WTYQNT CS I F +V Y + R+N+ ++T KTN+ E+ LDKI+ + IY +V+P Y G F+++ +I V P P I V +++T +I W+ P+++E +KYEI+++H KI Y+T +T F LDNLL C +YCF I FN +S SK+ICQNT I+ Sbjct: 239 YEINVFQATEVIYKSYQTNFNLDNVLLCKKYCFGIRAFNSWGKSEISKEKCGNINILSLGKVLVGPIETKRLPVILRWTYQNTFNCSGIEF-IVEYFSLRDNVNLFTYKTNKTEIILDKIQLNEIYNVRVRPTYGEELGPFTEDMIIWVKV-PDPPSNIKVTALSTTFIEISWESPKDIESTDKYEIVVIHQEKITYQTYETKFKLDNLLTCRQYCFAIRVFNKLGKSELSKEICQNTKIA 477 HSP 5 Score: 76.6406 bits (187), Expect = 2.015e-15 Identity = 38/95 (40.00%), Postives = 55/95 (57.89%), Query Frame = 2 Query: 488 LILVTSKPVKPIEIVVFNVTSTSFQIRWKMPREVEFPNKYEIILLHPNKIIYKTKQTHFTLDNLLPCTEYCFQISTFNFFSESTKSKKICQNTNI 772 L L+T P P EI++ + SF + W+ P + YEI + ++IYK+ QT+F LDN+L C +YCF I FN + +S SK+ C N NI Sbjct: 200 LPLMTYVPTTPTEIIITQSSQKSFNVSWRKPDFIGLIEGYEINVFQATEVIYKSYQTNFNLDNVLLCKKYCFGIRAFNSWGKSEISKEKCGNINI 294 The following BLAST results are available for this feature:
BLAST of SMED30013624 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of SMED30013624 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of SMED30013624 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of SMED30013624 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of SMED30013624 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of SMED30013624 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of SMED30013624 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 0
BLAST of SMED30013624 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 0
BLAST of SMED30013624 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 0
BLAST of SMED30013624 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of SMED30013624 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of SMED30013624 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of SMED30013624 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of SMED30013624 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30013624 ID=SMED30013624|Name=SMED30013624|organism=Schmidtea mediterranea sexual|type=transcript|length=841bpback to top protein sequence of SMED30013624-orf-1 >SMED30013624-orf-1 ID=SMED30013624-orf-1|Name=SMED30013624-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=275bp VNVTSNSILFQWKQQKNLKYEIIVQPNGTIYQTNETQFTLRNLQPCQRYCback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
|