Pre-mRNA cleavage complex 2 protein Pcf11
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30013603 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 1
Homology
BLAST of Pre-mRNA cleavage complex 2 protein Pcf11 vs. Ensembl Human
Match: PCF11 (PCF11 cleavage and polyadenylation factor subunit [Source:HGNC Symbol;Acc:HGNC:30097]) HSP 1 Score: 68.5514 bits (166), Expect = 1.629e-11 Identity = 45/164 (27.44%), Postives = 78/164 (47.56%), Query Frame = 1 Query: 592 DLKNYSLSKFSIFNDSTARKLYEGIPCGICHKRFRNTENPEFKRHLDFHFVKSQTFKIV------RRYTWNYSKWTE------------NMFVKK-------SNQMPCKQEFVRTIQLSEDNQRNKCGICREIFDVRFDNEKDSFMLQNAIVQENKPYHPTCIE 1008 DL N+++ + DS +LY GI C C RF ++ + HLD+H+ +++T K V RR+ ++ + W E + F +K Q K++ +++ C IC+E F+ +D E++ + L+NAI + K YHP+C E Sbjct: 1317 DLTNFTVEELKQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYADHLDWHYRQNRTEKDVSRKVTHRRWYYSLTDWIEFEEIADLEERAKSQFFEKVHEEVVLKTQEAAKEKEFQSVPAGPAGAVESCEICQEQFEQYWDEEEEEWHLKNAIRVDGKIYHPSCYE 1480
BLAST of Pre-mRNA cleavage complex 2 protein Pcf11 vs. Ensembl Zebrafish
Match: pcf11 (PCF11 cleavage and polyadenylation factor subunit [Source:ZFIN;Acc:ZDB-GENE-041114-175]) HSP 1 Score: 65.855 bits (159), Expect = 7.909e-11 Identity = 43/165 (26.06%), Postives = 81/165 (49.09%), Query Frame = 1 Query: 592 DLKNYSLSKFSIFNDSTARKLYEGIPCGICHKRFRNTENPEFKRHLDFHFVKSQTFKIV------RRYTWNYSKWTE--------------------NMFVKKSNQMPCKQEFVRTIQLSEDNQRNKCGICREIFDVRFDNEKDSFMLQNAIVQENKPYHPTCIE 1008 DL + L ++S KLY GI C C RF ++ + HLD+H+ ++++ K + RR+ ++ + W E V+K+ + ++EF ++++ + D C IC+E F++ ++ E++ + L+NAI + K YHP+C E Sbjct: 1220 DLTGFILDDMKQRHESIITKLYTGIQCYSCGMRFTASQTDVYADHLDWHYRQNRSEKDISKKVTHRRWYYSLTDWIEFEEIADLEERAKSQFFEKVHEEVVQKTQEAAKEREF-QSVKAAADVVHELCEICQEQFEMYWEEEEEEWHLKNAIRVDEKTYHPSCYE 1383
BLAST of Pre-mRNA cleavage complex 2 protein Pcf11 vs. Ensembl Zebrafish
Match: pcf11 (PCF11 cleavage and polyadenylation factor subunit [Source:ZFIN;Acc:ZDB-GENE-041114-175]) HSP 1 Score: 65.855 bits (159), Expect = 8.324e-11 Identity = 43/165 (26.06%), Postives = 81/165 (49.09%), Query Frame = 1 Query: 592 DLKNYSLSKFSIFNDSTARKLYEGIPCGICHKRFRNTENPEFKRHLDFHFVKSQTFKIV------RRYTWNYSKWTE--------------------NMFVKKSNQMPCKQEFVRTIQLSEDNQRNKCGICREIFDVRFDNEKDSFMLQNAIVQENKPYHPTCIE 1008 DL + L ++S KLY GI C C RF ++ + HLD+H+ ++++ K + RR+ ++ + W E V+K+ + ++EF ++++ + D C IC+E F++ ++ E++ + L+NAI + K YHP+C E Sbjct: 1214 DLTGFILDDMKQRHESIITKLYTGIQCYSCGMRFTASQTDVYADHLDWHYRQNRSEKDISKKVTHRRWYYSLTDWIEFEEIADLEERAKSQFFEKVHEEVVQKTQEAAKEREF-QSVKAAADVVHELCEICQEQFEMYWEEEEEEWHLKNAIRVDEKTYHPSCYE 1377
BLAST of Pre-mRNA cleavage complex 2 protein Pcf11 vs. Ensembl Xenopus
Match: pcf11 (PCF11, cleavage and polyadenylation factor subunit [Source:NCBI gene;Acc:100170197]) HSP 1 Score: 62.003 bits (149), Expect = 1.826e-9 Identity = 42/165 (25.45%), Postives = 74/165 (44.85%), Query Frame = 1 Query: 592 DLKNYSLSKFSIFNDSTARKLYEGIPCGICHKRFRNTENPEFKRHLDFHFVKSQTFKIV------RRYTWNYSKWTE--------------------NMFVKKSNQMPCKQEFVRTIQLSEDNQRNKCGICREIFDVRFDNEKDSFMLQNAIVQENKPYHPTCIE 1008 DL + + DS +LY GI C C RF ++ + HLD+H+ +++T K V RR+ ++ W E + K+ + ++EF+ ++ C IC+E F+ +D E++ + L+NA+ +K YHP+C E Sbjct: 1372 DLTTFQMEDLKQRYDSVINRLYTGIQCYSCGMRFTKSQTDIYADHLDWHYRQNRTEKDVSRKITHRRWYYSLKDWIEFEEIADLEERAKSQFFEKVHEEVILKTQEAAKEKEFL-SVPAGPAGADEICEICQEQFEQYWDEEEEEWHLKNAMRMNDKIYHPSCYE 1535
BLAST of Pre-mRNA cleavage complex 2 protein Pcf11 vs. Ensembl Xenopus
Match: pcf11 (PCF11, cleavage and polyadenylation factor subunit [Source:NCBI gene;Acc:100170197]) HSP 1 Score: 62.003 bits (149), Expect = 1.875e-9 Identity = 42/165 (25.45%), Postives = 74/165 (44.85%), Query Frame = 1 Query: 592 DLKNYSLSKFSIFNDSTARKLYEGIPCGICHKRFRNTENPEFKRHLDFHFVKSQTFKIV------RRYTWNYSKWTE--------------------NMFVKKSNQMPCKQEFVRTIQLSEDNQRNKCGICREIFDVRFDNEKDSFMLQNAIVQENKPYHPTCIE 1008 DL + + DS +LY GI C C RF ++ + HLD+H+ +++T K V RR+ ++ W E + K+ + ++EF+ ++ C IC+E F+ +D E++ + L+NA+ +K YHP+C E Sbjct: 1464 DLTTFQMEDLKQRYDSVINRLYTGIQCYSCGMRFTKSQTDIYADHLDWHYRQNRTEKDVSRKITHRRWYYSLKDWIEFEEIADLEERAKSQFFEKVHEEVILKTQEAAKEKEFL-SVPAGPAGADEICEICQEQFEQYWDEEEEEWHLKNAMRMNDKIYHPSCYE 1627
BLAST of Pre-mRNA cleavage complex 2 protein Pcf11 vs. Ensembl Mouse
Match: Pcf11 (PCF11 cleavage and polyadenylation factor subunit [Source:MGI Symbol;Acc:MGI:1919579]) HSP 1 Score: 68.9366 bits (167), Expect = 9.481e-12 Identity = 45/164 (27.44%), Postives = 78/164 (47.56%), Query Frame = 1 Query: 592 DLKNYSLSKFSIFNDSTARKLYEGIPCGICHKRFRNTENPEFKRHLDFHFVKSQTFKIV------RRYTWNYSKWTE------------NMFVKK-------SNQMPCKQEFVRTIQLSEDNQRNKCGICREIFDVRFDNEKDSFMLQNAIVQENKPYHPTCIE 1008 DL N+++ + DS +LY GI C C RF ++ + HLD+H+ +++T K V RR+ ++ + W E + F +K Q K++ +++ C IC+E F+ +D E++ + L+NAI + K YHP+C E Sbjct: 1315 DLTNFTIEELKQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYADHLDWHYRQNRTEKDVSRKVTHRRWYYSLTDWIEFEEIADLEERAKSQFFEKVHEEVVLKTQEAAKEKEFQSVPAGPAGAVESCEICQEQFEQYWDEEEEEWHLKNAIRVDGKIYHPSCYE 1478
BLAST of Pre-mRNA cleavage complex 2 protein Pcf11 vs. Ensembl Mouse
Match: Pcf11 (PCF11 cleavage and polyadenylation factor subunit [Source:MGI Symbol;Acc:MGI:1919579]) HSP 1 Score: 68.5514 bits (166), Expect = 1.087e-11 Identity = 45/164 (27.44%), Postives = 78/164 (47.56%), Query Frame = 1 Query: 592 DLKNYSLSKFSIFNDSTARKLYEGIPCGICHKRFRNTENPEFKRHLDFHFVKSQTFKIV------RRYTWNYSKWTE------------NMFVKK-------SNQMPCKQEFVRTIQLSEDNQRNKCGICREIFDVRFDNEKDSFMLQNAIVQENKPYHPTCIE 1008 DL N+++ + DS +LY GI C C RF ++ + HLD+H+ +++T K V RR+ ++ + W E + F +K Q K++ +++ C IC+E F+ +D E++ + L+NAI + K YHP+C E Sbjct: 1238 DLTNFTIEELKQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYADHLDWHYRQNRTEKDVSRKVTHRRWYYSLTDWIEFEEIADLEERAKSQFFEKVHEEVVLKTQEAAKEKEFQSVPAGPAGAVESCEICQEQFEQYWDEEEEEWHLKNAIRVDGKIYHPSCYE 1401
BLAST of Pre-mRNA cleavage complex 2 protein Pcf11 vs. UniProt/SwissProt
Match: sp|O94913|PCF11_HUMAN (Pre-mRNA cleavage complex 2 protein Pcf11 OS=Homo sapiens OX=9606 GN=PCF11 PE=1 SV=3) HSP 1 Score: 68.5514 bits (166), Expect = 7.822e-11 Identity = 45/164 (27.44%), Postives = 78/164 (47.56%), Query Frame = 1 Query: 592 DLKNYSLSKFSIFNDSTARKLYEGIPCGICHKRFRNTENPEFKRHLDFHFVKSQTFKIV------RRYTWNYSKWTE------------NMFVKK-------SNQMPCKQEFVRTIQLSEDNQRNKCGICREIFDVRFDNEKDSFMLQNAIVQENKPYHPTCIE 1008 DL N+++ + DS +LY GI C C RF ++ + HLD+H+ +++T K V RR+ ++ + W E + F +K Q K++ +++ C IC+E F+ +D E++ + L+NAI + K YHP+C E Sbjct: 1317 DLTNFTVEELKQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYADHLDWHYRQNRTEKDVSRKVTHRRWYYSLTDWIEFEEIADLEERAKSQFFEKVHEEVVLKTQEAAKEKEFQSVPAGPAGAVESCEICQEQFEQYWDEEEEEWHLKNAIRVDGKIYHPSCYE 1480
BLAST of Pre-mRNA cleavage complex 2 protein Pcf11 vs. TrEMBL
Match: A0A0R3S9K3 (CID domain-containing protein OS=Hymenolepis diminuta OX=6216 GN=HDID_LOCUS937 PE=4 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 1.709e-13 Identity = 46/161 (28.57%), Postives = 77/161 (47.83%), Query Frame = 1 Query: 592 DLKNYSLSKFSIFNDSTARKLYEGIPCGICHKRFRNTENPEFKRHLDFHFVKSQT---FKIVRRYTWNYSKWTENMFVKKSNQMPCKQEFVRTIQLSEDNQRNKCGICREIFDVRFDNEKDSFMLQNAIVQENKPYHPTCIEVNKRLILVIIKSYSQRKVN 1065 D+K+YS KF + LY G C C RF + ++P F HLD+H++K+ T + R+Y S W ++ +N + D + N+C +C + FD FD ++ +ML AI+++ K YHP C E + V + + + + V Sbjct: 670 DIKDYSWEKFRRVYVAEVDALYSGFQCLQCGLRFASEDDPAFVAHLDYHYMKNSTENQGRRSRKYYQPASNWLSYGLMEHANNPDTNEVKEYRCPAFADEKLNECAVCGDKFDKIFDRQEGEWMLLGAIIEDGKAYHPICREDAGKQFPVAVDTLTWQSVG 830
BLAST of Pre-mRNA cleavage complex 2 protein Pcf11 vs. TrEMBL
Match: A0A2H1C1Z8 (Pre-mRNA cleavage complex 2 protein Pcf11 OS=Fasciola hepatica OX=6192 GN=D915_008334 PE=4 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 2.554e-13 Identity = 52/155 (33.55%), Postives = 79/155 (50.97%), Query Frame = 1 Query: 592 DLKNYSLSKFSIFNDSTARKLYEGIPCGICHKRFRNTENPEFKRHLDFHFVK---------SQTFKIVRRYTWNYSKWTE--NMFVKKSNQMPCKQE-----FVRTIQLSEDNQRNKCGICREIFDVRFDNEKDSFMLQNAIVQENKPYHPTCIE 1008 +LK Y+ F + S LY G CG C RF++ ++ EF HLD+H++K S+ F RY W +S+ T N + +P QE FV D +N C +C E FDV +D E++ +ML++A++ ++K YHP C E Sbjct: 733 ELKTYAWETFKVPCPSEVDVLYSGHQCGQCGLRFQSEQSAEFASHLDYHYMKNSRDDQGHRSRNFYQASRY-WLFSEITRDGNAPFEPGTPVPDLQECKCPAFV-------DPSKNVCAVCNEKFDVFWDQEEEEWMLRDAVMAQDKVYHPICQE 879
BLAST of Pre-mRNA cleavage complex 2 protein Pcf11 vs. TrEMBL
Match: A0A0R3T8L1 (CID domain-containing protein OS=Rodentolepis nana OX=102285 GN=HNAJ_LOCUS3398 PE=4 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 2.612e-13 Identity = 46/161 (28.57%), Postives = 78/161 (48.45%), Query Frame = 1 Query: 592 DLKNYSLSKFSIFNDSTARKLYEGIPCGICHKRFRNTENPEFKRHLDFHFVKSQTFKIVRR---YTWNYSKWTENMFVKKSNQMPCKQEFVRTIQLSEDNQRNKCGICREIFDVRFDNEKDSFMLQNAIVQENKPYHPTCIEVNKRLILVIIKSYSQRKVN 1065 D+K+YS KF + LY G C C RF + ++P F HLD+H++K+ T RR Y S W ++ ++ + D + N+C +C + FD FD ++ +ML AI+++ K YHP C E + V + +++ ++V Sbjct: 671 DIKDYSWEKFRRVYMAEIDALYSGFQCLQCGLRFASEDDPTFVAHLDYHYMKNSTENQGRRSRNYYQPASNWLSYGLMEDTSDPDTNEVKEYKCPAFADEKLNECAVCGDKFDKIFDRQEGEWMLLGAIIEDGKAYHPICREDAGKQFPVAVDTFTCQEVG 831
BLAST of Pre-mRNA cleavage complex 2 protein Pcf11 vs. TrEMBL
Match: A0A504YBZ4 (Pre-mRNA cleavage complex 2 protein Pcf11 OS=Fasciola gigantica OX=46835 GN=FGIG_00632 PE=4 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 4.074e-13 Identity = 52/155 (33.55%), Postives = 79/155 (50.97%), Query Frame = 1 Query: 592 DLKNYSLSKFSIFNDSTARKLYEGIPCGICHKRFRNTENPEFKRHLDFHFVK---------SQTFKIVRRYTWNYSKWTE--NMFVKKSNQMPCKQE-----FVRTIQLSEDNQRNKCGICREIFDVRFDNEKDSFMLQNAIVQENKPYHPTCIE 1008 +LK Y+ F + S LY G CG C RF++ ++ EF HLD+H++K S+ F RY W +S+ T N + +P QE FV D +N C +C E FDV +D E++ +ML++A++ ++K YHP C E Sbjct: 733 ELKTYAWETFKVPCPSEVDVLYSGHQCGQCGLRFQSEQSAEFASHLDYHYMKNSRDDQGHRSRNFYQASRY-WLFSEITRDGNAPFEPGTPVPDLQECKCPAFV-------DPSKNVCAVCNEKFDVFWDQEEEEWMLRDAVMVQDKVYHPICQE 879
BLAST of Pre-mRNA cleavage complex 2 protein Pcf11 vs. TrEMBL
Match: A0A183B6Z6 (Uncharacterized protein OS=Echinostoma caproni OX=27848 GN=ECPE_LOCUS14981 PE=4 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 5.767e-13 Identity = 50/150 (33.33%), Postives = 79/150 (52.67%), Query Frame = 1 Query: 592 DLKNYSLSKFSIFNDSTARKLYEGIPCGICHKRFRNTENPEFKRHLDFHFVK---------SQTFKIVRRYTWNYSKWTE--NMFVKKSNQMPCKQEFVRTIQLSEDNQRNKCGICREIFDVRFDNEKDSFMLQNAIVQENKPYHPTCIE 1008 +LK+YS F + S LY G CG C RF++ +PEF HLD+H++K S+ F RY W +S+ T N + +P QE D +N C +C E FD+ +D++++ +ML++A++ ++K YHP C E Sbjct: 702 ELKSYSWETFKMPCPSEIDSLYNGHQCGQCGLRFQSDRSPEFASHLDYHYMKNSRDDQGHRSRNFYQASRY-WLFSETTRDGNAPFEPGTPVPDLQEC--KCPAFSDPSKNVCAVCNEKFDLFWDHDEEEWMLRDAVLVQDKVYHPICQE 848
BLAST of Pre-mRNA cleavage complex 2 protein Pcf11 vs. Ensembl Cavefish
Match: pcf11 (PCF11 cleavage and polyadenylation factor subunit [Source:NCBI gene;Acc:103026916]) HSP 1 Score: 62.3882 bits (150), Expect = 8.281e-10 Identity = 44/174 (25.29%), Postives = 81/174 (46.55%), Query Frame = 1 Query: 565 DDLPLVDEFDLKNYSLSKFSIFNDSTARKLYEGIPCGICHKRFRNTENPEFKRHLDFHFVKSQTFKIV------RRYTWNYSKWTE--------------------NMFVKKSNQMPCKQEFVRTIQLSEDNQRNKCGICREIFDVRFDNEKDSFMLQNAIVQENKPYHPTCIE 1008 D+LP D+ + L + KLY GI C C RF ++ + HLD+H+ ++++ K + RR+ + + W E V+K+ + ++EF ++++ + D C IC+E ++ ++ E++ + L+NAI E K YHP+C E Sbjct: 1258 DNLP-----DMTGFGLEDMKQRYECVITKLYTGIQCYSCGMRFTASQTDVYADHLDWHYRQNRSEKDISKKITHRRWYYTLTDWIEFEEIADLEERAKSQFFEKVHEEVVQKTQEAAKEREF-QSVKAAPDVVDESCEICQEQLEMYWEEEEEEWHLKNAIRVEGKIYHPSCYE 1425
BLAST of Pre-mRNA cleavage complex 2 protein Pcf11 vs. Ensembl Medaka
Match: pcf11 (PCF11 cleavage and polyadenylation factor subunit [Source:NCBI gene;Acc:101164244]) HSP 1 Score: 56.225 bits (134), Expect = 6.990e-8 Identity = 77/353 (21.81%), Postives = 136/353 (38.53%), Query Frame = 1 Query: 100 PPPHMQMQTSAQLPQPHQYGMPINRHVNPSIQMCQSAPSHPNTQLHPNMQMEIN---SQVEWNSRNNQICPNVNR-----------FAHNNSLCYRGNMNRPVHESLEKCSNVSRIRIPSRATDNSEEICNKPYKTD-ELDASSKADEYDPANYVDLIQDYPTYNPSNLSDDLPLVDEFDLKNYSLSKFSIFNDSTARKLYEGIPCGICHKRFRNTENPEFKRHLDFHF----VKSQTFKIV--RRYTWNYSKWTE------------NMFVKKSN-------QMPCKQEFVRTIQLSEDNQRNKCGICREIFDVRFDNEKDSFMLQNAIVQENKPYHPTCIEVNKRLILVII 1038 P P++Q P + + +PI ++ ++Q Q P +P P N Q S N PN+N F N + + ++ + ++ + S + KP + D L ASS + + +D+P + F + + L S+ KLY G C +C RF T+ + HLD+HF Q K V RR+ + + W E + F +K N Q K++ ++++ ++D C IC+E F+ + E++ + L+NAI + K +HP+C E K++ L + Sbjct: 1061 PQPNLQPHVRQMAPDVYNHPVPIQQNFAMTLQPFQE-PMNPQFPPAPMATGNFNPHIGQPGPGSFYNPPAPNINMQQPVMASMNAPFLPPNQVSFEPQFP----QAAASGEHFGQVDVESLLSKLISTGIIKPSQPDPALPASSGEPAA--VAPPAAPEPEEEEDQEVEENDIPDLTGFSIDHMKLRYESVVT-----KLYTGNQCCLCSMRFSATQTDLYADHLDWHFRQNHADKQASKKVTHRRWYYTLTDWIEFEEIADLEERAKSHFFEKENEEVVQKTQAAAKEKEFQSVRATKDQVGESCEICQEPFETYWVEEEEDWFLKNAIKVDEKNFHPSCFEDYKKVSLPFL 1401
BLAST of Pre-mRNA cleavage complex 2 protein Pcf11 vs. Ensembl Medaka
Match: pcf11 (PCF11 cleavage and polyadenylation factor subunit [Source:NCBI gene;Acc:101164244]) HSP 1 Score: 53.1434 bits (126), Expect = 5.451e-7 Identity = 76/347 (21.90%), Postives = 133/347 (38.33%), Query Frame = 1 Query: 100 PPPHMQMQTSAQLPQPHQYGMPINRHVNPSIQMCQSAPSHPNTQLHPNMQMEIN---SQVEWNSRNNQICPNVNR-----------FAHNNSLCYRGNMNRPVHESLEKCSNVSRIRIPSRATDNSEEICNKPYKTD-ELDASSKADEYDPANYVDLIQDYPTYNPSNLSDDLPLVDEFDLKNYSLSKFSIFNDSTARKLYEGIPCGICHKRFRNTENPEFKRHLDFHF----VKSQTFKIV--RRYTWNYSKWTE------------NMFVKKSN-------QMPCKQEFVRTIQLSEDNQRNKCGICREIFDVRFDNEKDSFMLQNAIVQENKPYHPTCIEVNKR 1020 P P++Q P + + +PI ++ ++Q Q P +P P N Q S N PN+N F N + + ++ + ++ + S + KP + D L ASS + + +D+P + F + + L S+ KLY G C +C RF T+ + HLD+HF Q K V RR+ + + W E + F +K N Q K++ ++++ ++D C IC+E F+ + E++ + L+NAI + K +HP+C E K+ Sbjct: 1061 PQPNLQPHVRQMAPDVYNHPVPIQQNFAMTLQPFQE-PMNPQFPPAPMATGNFNPHIGQPGPGSFYNPPAPNINMQQPVMASMNAPFLPPNQVSFEPQFP----QAAASGEHFGQVDVESLLSKLISTGIIKPSQPDPALPASSGEPAA--VAPPAAPEPEEEEDQEVEENDIPDLTGFSIDHMKLRYESVVT-----KLYTGNQCCLCSMRFSATQTDLYADHLDWHFRQNHADKQASKKVTHRRWYYTLTDWIEFEEIADLEERAKSHFFEKENEEVVQKTQAAAKEKEFQSVRATKDQVGESCEICQEPFETYWVEEEEDWFLKNAIKVDEKNFHPSCFEDYKK 1395
BLAST of Pre-mRNA cleavage complex 2 protein Pcf11 vs. Planmine SMEST
Match: SMESG000059887.1 (SMESG000059887.1) HSP 1 Score: 684.1 bits (1764), Expect = 0.000e+0 Identity = 323/329 (98.18%), Postives = 324/329 (98.48%), Query Frame = 1 Query: 34 QIPFNMRMPPQNMRVSAPYLNRPPPHMQMQTSAQLPQPHQYGMPINRHVNPSIQMCQSAPSHPNTQLHPNMQMEINSQVEWNSRNNQICPNVNRFAHNNSLCYRGNMNRPVHESLEKCSNVSRIRIPSRATDNSEEICNKPYKTDELDASSKADEYDPANYVDLIQDYPTYNPSNLSDDLPLVDEFDLKNYSLSKFSIFNDSTARKLYEGIPCGICHKRFRNTENPEFKRHLDFHFVKSQTFKIVRRYTWNYSKWTENMFVKKSNQMPCKQEFVRTIQLSEDNQRNKCGICREIFDVRFDNEKDSFMLQNAIVQENKPYHPTCIEVNKR 1020 QIPFNMRMPPQNMRVSAPYLNRPPPHMQMQTSAQLPQPHQYGMPINRHVNPSIQMCQSAP HPNTQLHPNMQMEINSQV+WNSRNNQIC NVNRFAHNNSLCYRGNMNRPVHESLEKCSNVSRIRIPSRATDNSEEICNKPYKTDEL AS KADEYDPANYVDLIQDYPTYNPSNLSDDLPLVDEFDLKNYSLSKFSI NDSTARKLYEGIPCGICHKRFRNTENPEFKRHLDFHFVKSQTFKIVRRYTWNYSKWTENMFVKKSNQMPCKQEFVRTIQLSEDNQRNKCGICREIFDVRFDNEKDSFMLQNAIVQENKPYHPTCIEVNKR Sbjct: 440 QIPFNMRMPPQNMRVSAPYLNRPPPHMQMQTSAQLPQPHQYGMPINRHVNPSIQMCQSAPRHPNTQLHPNMQMEINSQVDWNSRNNQICSNVNRFAHNNSLCYRGNMNRPVHESLEKCSNVSRIRIPSRATDNSEEICNKPYKTDELGASCKADEYDPANYVDLIQDYPTYNPSNLSDDLPLVDEFDLKNYSLSKFSILNDSTARKLYEGIPCGICHKRFRNTENPEFKRHLDFHFVKSQTFKIVRRYTWNYSKWTENMFVKKSNQMPCKQEFVRTIQLSEDNQRNKCGICREIFDVRFDNEKDSFMLQNAIVQENKPYHPTCIEVNKR 768
BLAST of Pre-mRNA cleavage complex 2 protein Pcf11 vs. Planmine SMEST
Match: SMESG000059830.1 (SMESG000059830.1) HSP 1 Score: 93.9745 bits (232), Expect = 5.182e-20 Identity = 51/146 (34.93%), Postives = 78/146 (53.42%), Query Frame = 1 Query: 604 YSLSKFSIFNDSTARKLYEGIPCGICHKRFRNTENPEFKRHLDFHFVKSQTFKIVRRYTWNYSK----WTENMFVKKSN-------QMPCKQEFVRTIQLSEDNQRNKCGICREIFDVRFDNEKDSFMLQNAIVQENKPYHPTCIE 1008 YS + F + ND +LY G C +C RF+N ++ EF+ HLD+HF K+ T R NY W +K + C+Q+F + ED + NKC +C E F+V +D+E+++FMLQ+ + +K YHP C+E Sbjct: 549 YSRNCFKMCNDKEISELYSGHQCDLCGTRFKNKDSKEFELHLDYHFYKNTTSLTSTRKGRNYVTGSRLWVLGGSMKAAEPEYNYEQTTSCEQKF--KCPMFEDVEMNKCAVCMEGFEVAWDDEEEAFMLQDGQLHNDKVYHPICLE 692
BLAST of Pre-mRNA cleavage complex 2 protein Pcf11 vs. Planmine SMEST
Match: SMESG000059890.1 (SMESG000059890.1) HSP 1 Score: 78.9518 bits (193), Expect = 2.880e-15 Identity = 46/160 (28.75%), Postives = 80/160 (50.00%), Query Frame = 1 Query: 586 EFDLKNYSLSKFSIFNDSTARKLYEGIPCGICHKRFRNTENPEFKRHLDFHFVK----SQTFKIVRRYTWNYSKWT------ENMFVKKSNQMPCKQEFVRTIQLSEDNQRNKCGICREIFDVRFDNEKDSFMLQNAIVQENKPYHPTC-IEVNKRLILV 1032 + D YS F+ FN +L++ C IC RF + + F H+D+H++K S+T R YT W E V +S + K E R + L E + +C +C + FDV +D ++D+++L NA++ ++K YH C +++ K ++ Sbjct: 579 DIDFTKYSYELFNKFNREAVEELHKDYQCDICGIRFADKTSSRFVNHMDYHYLKNSIYSKTSSKQRSYTKGSKSWIIDSNNRETTTVAESKIVNVKPEEKRFLILDEYPEHEQCMVCFDKFDVVWDRDEDNYILANAVLVDDKAYHQNCTVDIGKSFKVI 738
BLAST of Pre-mRNA cleavage complex 2 protein Pcf11 vs. Planmine SMEST
Match: SMESG000059830.1 (SMESG000059830.1) HSP 1 Score: 55.0694 bits (131), Expect = 4.745e-9 Identity = 24/57 (42.11%), Postives = 39/57 (68.42%), Query Frame = 1 Query: 838 CKQEFVRTIQLSEDNQRNKCGICREIFDVRFDNEKDSFMLQNAIVQENKPYHPTCIE 1008 C+Q+F + ED + NKC +C E F+V +D+E+++FMLQ+ + +K YHP C+E Sbjct: 16 CEQKF--KCPMFEDVEMNKCAVCMEGFEVAWDDEEEAFMLQDGQLHNDKVYHPICLE 70 The following BLAST results are available for this feature:
BLAST of Pre-mRNA cleavage complex 2 protein Pcf11 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 1
BLAST of Pre-mRNA cleavage complex 2 protein Pcf11 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of Pre-mRNA cleavage complex 2 protein Pcf11 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of Pre-mRNA cleavage complex 2 protein Pcf11 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 2
BLAST of Pre-mRNA cleavage complex 2 protein Pcf11 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 2
BLAST of Pre-mRNA cleavage complex 2 protein Pcf11 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 2
BLAST of Pre-mRNA cleavage complex 2 protein Pcf11 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 1
BLAST of Pre-mRNA cleavage complex 2 protein Pcf11 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of Pre-mRNA cleavage complex 2 protein Pcf11 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 1
BLAST of Pre-mRNA cleavage complex 2 protein Pcf11 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of Pre-mRNA cleavage complex 2 protein Pcf11 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of Pre-mRNA cleavage complex 2 protein Pcf11 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of Pre-mRNA cleavage complex 2 protein Pcf11 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 2
BLAST of Pre-mRNA cleavage complex 2 protein Pcf11 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 4
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30013603 ID=SMED30013603|Name=Pre-mRNA cleavage complex 2 protein Pcf11|organism=Schmidtea mediterranea sexual|type=transcript|length=1461bpback to top protein sequence of SMED30013603-orf-1 >SMED30013603-orf-1 ID=SMED30013603-orf-1|Name=SMED30013603-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=360bp PPNMMMPPPNMQIPFNMRMPPQNMRVSAPYLNRPPPHMQMQTSAQLPQPHback to top Annotated Terms
The following terms have been associated with this transcript:
|