SMED30013549

Overview
NameSMED30013549
Smed IDSMED30013549
Length (bp)2130
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30013549 (SMED30013549) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30013549 (SMED30013549) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30013549 (SMED30013549) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30013549 (SMED30013549) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30013549

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 52

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
gutSMED30013549h1SMcG0000479 PL08009A2C06smed_ncbi_20240424PMID:23079596
Forsthoefel et al., 2012		whole organism asexual adult colorimetric in situ hybridization evidence
intestinal phagocyteSMED30013549h1SMcG0000479 PL08009A2C06smed_ncbi_20240424PMID:23079596
Forsthoefel et al., 2012		FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
gutSMED30013549h1SMcG0000479 PL08009A2C06smed_ncbi_20240424PMID:23079596
Forsthoefel et al., 2012		whole organism asexual adult colorimetric in situ hybridization evidence
intestinal phagocyteSMED30013549h1SMcG0000479 PL08009A2C06smed_ncbi_20240424PMID:23079596
Forsthoefel et al., 2012		FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
prepharyngeal regionSMED30013549h1SMcG0000478 SmedASXL_008060SmedAsxl_ww_GCZZ01PMID:27034770
Currie et al., 2016		whole organism asexual adult RNA-sequencing evidence
prepharyngeal regionSMED30013549h1SMcG0000478 SmedASXL_008060SmedAsxl_ww_GCZZ01PMID:27034770
Currie et al., 2016		whole organism asexual adult RNA-sequencing evidence
Smed sexual biotypeSMED30013549h1SMcG0000479 Contig14354uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30013549h1SMcG0000479 Contig14354newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30013549h1SMcG0000479 Contig41392newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30013549h1SMcG0000479 Contig41392uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30013549h1SMcG0000479 Contig14476newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30013549h1SMcG0000479 Contig14476uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30013549h1SMcG0000479 Contig45405newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30013549h1SMcG0000479 Contig45405uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
gutSMED30013549h1SMcG0000479 dd_Smed_v4_18010_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
pharynxSMED30013549h1SMcG0000479 dd_Smed_v4_6577_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30013549h1SMcG0000479 dd_Smed_v4_6577_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
gutSMED30013549h1SMcG0000479 dd_Smed_v4_6577_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30013549h1SMcG0000479 dd_Smed_v4_6577_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neuronSMED30013549h1SMcG0000479 dd_Smed_v4_6577_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		whole organism asexual adult colorimetric in situ hybridization evidence
neoblastSMED30013549h1SMcG0000479 dd_Smed_v4_6577_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30013549h1SMcG0000479 dd_Smed_v4_6577_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cilated neuronSMED30013549h1SMcG0000479 dd_Smed_v4_6577_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30013549h1SMcG0000479 Contig14354uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30013549h1SMcG0000479 Contig14354newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30013549h1SMcG0000479 Contig41392newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30013549h1SMcG0000479 Contig41392uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30013549h1SMcG0000479 Contig14476newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30013549h1SMcG0000479 Contig14476uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30013549h1SMcG0000479 Contig45405newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30013549h1SMcG0000479 Contig45405uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
gutSMED30013549h1SMcG0000479 dd_Smed_v4_18010_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
pharynxSMED30013549h1SMcG0000479 dd_Smed_v4_6577_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30013549h1SMcG0000479 dd_Smed_v4_6577_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
gutSMED30013549h1SMcG0000479 dd_Smed_v4_6577_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30013549h1SMcG0000479 dd_Smed_v4_6577_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neuronSMED30013549h1SMcG0000479 dd_Smed_v4_6577_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		whole organism asexual adult colorimetric in situ hybridization evidence
neoblastSMED30013549h1SMcG0000479 dd_Smed_v4_6577_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30013549h1SMcG0000479 dd_Smed_v4_6577_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cilated neuronSMED30013549h1SMcG0000479 dd_Smed_v4_6577_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parapharyngeal regionSMED30013549h1SMcG0000479 dd_Smed_v6_60553_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017		whole organism asexual adult RNA-sequencing evidence
parapharyngeal regionSMED30013549h1SMcG0000479 dd_Smed_v6_18010_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017		whole organism asexual adult RNA-sequencing evidence
parapharyngeal regionSMED30013549h1SMcG0000479 dd_Smed_v6_60553_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017		whole organism asexual adult RNA-sequencing evidence
parapharyngeal regionSMED30013549h1SMcG0000479 dd_Smed_v6_18010_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017		whole organism asexual adult RNA-sequencing evidence
gutSMED30013549h1SMcG0000479 SMED30000639smed_20140614PMID:26457503
Tu et al., 2015		whole organism asexual adult colorimetric in situ hybridization evidence
gutSMED30013549h1SMcG0000479 SMED30000639smed_20140614PMID:26457503
Tu et al., 2015		whole organism asexual adult colorimetric in situ hybridization evidence
gamma neoblastSMED30013549h1SMcG0000479 dd_Smed_v6_6577_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
goblet cellSMED30013549h1SMcG0000479 dd_Smed_v6_6577_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
intestinal phagocyteSMED30013549h1SMcG0000479 dd_Smed_v6_6577_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
gamma neoblastSMED30013549h1SMcG0000479 dd_Smed_v6_6577_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
goblet cellSMED30013549h1SMcG0000479 dd_Smed_v6_6577_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
intestinal phagocyteSMED30013549h1SMcG0000479 dd_Smed_v6_6577_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30013549 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.014966:1..14632 +9271
Homology
[Close]
BLAST of SMED30013549 vs. TrEMBL
Match: K1R1R1 (Bullous pemphigoid antigen 1, isoforms 6/9/10 OS=Crassostrea gigas OX=29159 GN=CGI_10016946 PE=4 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.360e-8
Identity = 71/329 (21.58%), Postives = 139/329 (42.25%), Query Frame = -2 
Query:  837 AWDWIDQLMHCLQMHIESIKNYHQYVKKYNLCKNGLEYAHLFLKSIFENLHKVNLET---------VNDYLNDCLLIMFNITDISEDIFKTYLKVIPTRYRICTTPEMQAKVLINCCFDKVELHSHEIVIVLDKDFETNLWXXXXXXXXXXXVEEFILNVPSLFLILDGFDKEIIDSCNLMKRQIISTWELIKSQFR----NYIYNSLMIAIDQRELTRTTCVDKNICYSILD---NLIRSLELD----KFQSEKIFQFRHQLENMTIENISYEMLTVNYWHCLRNAIQLFNDTKLYAKHFNEILNENYNREECVITIKNPR-YVTMAY 1760
            +W+W+ Q+  CLQ H+ +   YHQ+          L    LFLK +  N  +  +ET         + +  N  L     +  +     + Y   I  R   C+ P ++AK L+  C ++V+L   E V+VLD   + + W+++     +         VP + L++   DK+ +     +K Q++  W+    +FR     +I N++     ++EL+R +   K     +++    L+R L ++    K     +  FR  +  +   +  Y   T   W      +  + +   YAK + + L E+  +E+ ++     + Y + AY
Sbjct:  151 SWNWLSQVTKCLQTHMTNAGEYHQFFHDVQFLDEDL---GLFLKLMNSNTMRERVETQEADVMCKHLRNITNKLLDFQCRVDKLGNQAVEVY--PIHLRRESCSYP-LKAKALVFYCHEEVKLEVGEEVLVLDT-TDQDKWQVRCNNGSET-------EVPGVILVIPPPDKKAVQQVQRIKEQLVIHWDTTLKRFRTQLIQFISNNIK-DTQEKELSRISSGQKAELMRLMNEAVQLLRPLSVEDPDFKIMMANVTNFRKIISQVKSGDKDYTNGTTQKWQANAKVLVHYKEFLTYAKTYKQALAESREQEKLLLKGAGGQLYSSKAY 464
[Close]
BLAST of SMED30013549 vs. Planmine SMEST
Match: SMESG000017522.1 (SMESG000017522.1)

HSP 1 Score: 654.055 bits (1686), Expect = 0.000e+0
Identity = 384/526 (73.00%), Postives = 394/526 (74.90%), Query Frame = -2 
Query:  525 MLHFNSGYIFKELKEIQXXXXXXXXXXXXXXXEAIQSCLEITSIETFFGKFSNDLDQYFTNFPLANRNNEMFYMLSEISSANLSKYFTQEKVLLIICYVEFYSRF*NISMDTNFAWDWIDQLMHCLQMHIESIKNYHQYVKKYNLCKNGLEYAHLFLKSIFENLHKVNLETVNDYLNDCLLIMFNITDISEDIFKTYLKVIPTRYRICTTPEMQAKVLINCCFDKVELHSHEIVIVLDKDFETNLWXXXXXXXXXXXVEEFILNVPSLFLILDGFDKEIIDSCNLMKRQIISTWELIKSQFRNYIYNSLMIAIDQRELTRTTCVDKNICYSILDNLIRSLELDKFQSEKIFQFRHQLENMTIENISYEMLTVNYWHCLRNAIQLFNDTKLYAKHFNEILNENYNREECVITIKNPRYVTMAYISNITEEQATELELTFPTDKTITSNSDDTLNGTDDLSEVSFMSLPEEKQTNNNRKIESVNFDKKYTSSYHLYLNEYSIKPMVQTVTIIRPNPFVAEPTTDTQII 2102
            MLHFNSGYIFKELKEIQKSENNISRISEIIKEEAIQSCLEITSIETFFGKFSND+DQYFTNFPLANRNNEMFYMLSEISSANLSKYFTQEK                                               YVKKYNLCKNGLEYAHLFLKSIFENLHKVNLETVNDYLNDCLLIMFNITDISEDIFKTYLKVIPTRYRICTTPEMQAKVLINCCFDKVELHSHEIVIVLDKDFETNLWKIKKTVKVDDKVEEFILNVPSLFLILDGFDKE           II +  L+K Q            I   EL ++                              QFR+ + N         M+ ++     R       DTKLYAKHFNEILNENYNREECVITIKNPRYVTMAYISNITEEQATELELTFPTDKTITSNSDDTLNGTDDLSEVSFMSLPEEKQTNNNRKIESVNFDKKYTSSYHLYLNEYSIKPMVQTVTIIRPNPFVAEPTTDTQII
Sbjct:    1 MLHFNSGYIFKELKEIQKSENNISRISEIIKEEAIQSCLEITSIETFFGKFSNDIDQYFTNFPLANRNNEMFYMLSEISSANLSKYFTQEK-----------------------------------------------YVKKYNLCKNGLEYAHLFLKSIFENLHKVNLETVNDYLNDCLLIMFNITDISEDIFKTYLKVIPTRYRICTTPEMQAKVLINCCFDKVELHSHEIVIVLDKDFETNLWKIKKTVKVDDKVEEFILNVPSLFLILDGFDKE-----------IIDSCNLMKRQI-----------ISTWELIKS------------------------------QFRNYIYNSL-------MIAIDQRELTR-------DTKLYAKHFNEILNENYNREECVITIKNPRYVTMAYISNITEEQATELELTFPTDKTITSNSDDTLNGTDDLSEVSFMSLPEEKQTNNNRKIESVNFDKKYTSSYHLYLNEYSIKPMVQTVTIIRPNPFVAEPTTDTQII 413

HSP 2 Score: 316.62 bits (810), Expect = 0.000e+0
Identity = 158/160 (98.75%), Postives = 159/160 (99.38%), Query Frame = -1 
Query:    1 IKNINFEKFETIIIRKSFKESENNKSIIYGIINKFGEILNIFQAINENILNVKDETFFDAQFEEEISWDKAYQKNYLLTMDIPENILTTDYVKCRLAKQLQLYLSLEYKILFEVVQINDVIFCKAQSENEDSRTVIFGWQNQMNNEILGINEAIKENLIN 480
            I NINFEKFETIIIRKSFKESENNKSIIYGIINKFGEILNIFQAINENILNVKDETFFDAQFEEEISWDKAYQKNYLLTMDIPENILTTDY+KCRLAKQLQLYLSLEYKILFEVVQINDVIFCKAQSENEDSRTVIFGWQNQMNNEILGINEAIKENLIN
Sbjct:  412 IININFEKFETIIIRKSFKESENNKSIIYGIINKFGEILNIFQAINENILNVKDETFFDAQFEEEISWDKAYQKNYLLTMDIPENILTTDYIKCRLAKQLQLYLSLEYKILFEVVQINDVIFCKAQSENEDSRTVIFGWQNQMNNEILGINEAIKENLIN 571

HSP 3 Score: 52.373 bits (124), Expect = 1.426e-6
Identity = 40/151 (26.49%), Postives = 79/151 (52.32%), Query Frame = -1 
Query:    1 IIIRKSFKESENNKSIIYGIINKFG-EILNIFQAINENILNVKDETF-FDAQFEEEISWDKAYQKNYLLTMDIPENILTTDYVKCRLAKQLQLYLSLEYKILFEVVQINDVIFCKAQSENEDSRTVIFGWQNQMNNEILGINEAIKENLIN 447
            +I  K+  E+E+++++I+G  N+   EIL I +AI EN++NV+ +T   + + ++E+SW  A ++  ++  +I +NI+T +Y+KC +      Y++ +                            I G  N  NN++L  NEAI+  +++
Sbjct:  531 VIFCKAQSENEDSRTVIFGWQNQMNNEILGINEAIKENLINVEYQTCRCNRENKDEMSWKNAIEEKLMIACEINKNIITEEYMKCLIESNTNEYINTD-------------------------EMEILGAVNTRNNKLLETNEAIEGKILD 656

HSP 4 Score: 51.2174 bits (121), Expect = 3.535e-6
Identity = 40/141 (28.37%), Postives = 72/141 (51.06%), Query Frame = -1 
Query:    1 ENNKSIIYGI-INKFGEILNIFQAINENILNVKDETF-FDAQFEEEISWDKAYQKNYLLTMDIPENILTTDYVKCRLAKQLQLYLSLEYKILFEVVQINDVIFCKAQSENEDSRTVIFGWQNQMNNEILGINEAIKENLIN 417
            ENN++II G+ +    EIL I +AI EN++NV+ +T   + + +EE+SW  A ++  ++  +I +NI+T +Y+KC +      Y++ +                            I G  N  NN++L  NEAI+  +++
Sbjct: 2046 ENNETIIIGVKLQDDDEILCIEEAIKENLINVEYQTCRCNRENKEEMSWKNAIEEKLMIACEINKNIITEEYMKCLIESNTNEYINTD-------------------------EMEILGAVNTRNNKLLETNEAIERKILD 2161
[Close]
BLAST of SMED30013549 vs. Planmine SMEST
Match: SMESG000017522.1 (SMESG000017522.1)

HSP 1 Score: 317.005 bits (811), Expect = 2.931e-166
Identity = 157/158 (99.37%), Postives = 158/158 (100.00%), Query Frame = -1 
Query:    1 NINFEKFETIIIRKSFKESENNKSIIYGIINKFGEILNIFQAINENILNVKDETFFDAQFEEEISWDKAYQKNYLLTMDIPENILTTDYVKCRLAKQLQLYLSLEYKILFEVVQINDVIFCKAQSENEDSRTVIFGWQNQMNNEILGINEAIKENLIN 474
            NINFEKFETIIIRKSFKESENNKSIIYGIINKFGEILNIFQAINENILNVKDETFFDAQFEEEISWDKAYQKNYLLTMDIPENILTTDY+KCRLAKQLQLYLSLEYKILFEVVQINDVIFCKAQSENEDSRTVIFGWQNQMNNEILGINEAIKENLIN
Sbjct:  319 NINFEKFETIIIRKSFKESENNKSIIYGIINKFGEILNIFQAINENILNVKDETFFDAQFEEEISWDKAYQKNYLLTMDIPENILTTDYIKCRLAKQLQLYLSLEYKILFEVVQINDVIFCKAQSENEDSRTVIFGWQNQMNNEILGINEAIKENLIN 476

HSP 2 Score: 289.271 bits (739), Expect = 2.931e-166
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = -2 
Query:  525 DTKLYAKHFNEILNENYNREECVITIKNPRYVTMAYISNITEEQATELELTFPTDKTITSNSDDTLNGTDDLSEVSFMSLPEEKQTNNNRKIESVNFDKKYTSSYHLYLNEYSIKPMVQTVTIIRPNPFVAEPTTDTQII 944
            DTKLYAKHFNEILNENYNREECVITIKNPRYVTMAYISNITEEQATELELTFPTDKTITSNSDDTLNGTDDLSEVSFMSLPEEKQTNNNRKIESVNFDKKYTSSYHLYLNEYSIKPMVQTVTIIRPNPFVAEPTTDTQII
Sbjct:  179 DTKLYAKHFNEILNENYNREECVITIKNPRYVTMAYISNITEEQATELELTFPTDKTITSNSDDTLNGTDDLSEVSFMSLPEEKQTNNNRKIESVNFDKKYTSSYHLYLNEYSIKPMVQTVTIIRPNPFVAEPTTDTQII 318

HSP 3 Score: 312.768 bits (800), Expect = 3.699e-91
Identity = 177/225 (78.67%), Postives = 178/225 (79.11%), Query Frame = -2 
Query: 1428 MLHFNSGYIFKELKEIQXXXXXXXXXXXXXXXEAIQSCLEITSIETFFGKFSNDLDQYFTNFPLANRNNEMFYMLSEISSANLSKYFTQEKVLLIICYVEFYSRF*NISMDTNFAWDWIDQLMHCLQMHIESIKNYHQYVKKYNLCKNGLEYAHLFLKSIFENLHKVNLETVNDYLNDCLLIMFNITDISEDIFKTYLKVIPTRYRICTTPEMQAKVLINCCFDK 2102
            MLHFNSGYIFKELKEIQKSENNISRISEIIKEEAIQSCLEITSIETFFGKFSND+DQYFTNFPLANRNNEMFYMLSEISSANLSKYFTQEK                                               YVKKYNLCKNGLEYAHLFLKSIFENLHKVNLETVNDYLNDCLLIMFNITDISEDIFKTYLKVIPTRYRICTTPEMQAKVLINCCFDK
Sbjct:    1 MLHFNSGYIFKELKEIQKSENNISRISEIIKEEAIQSCLEITSIETFFGKFSNDIDQYFTNFPLANRNNEMFYMLSEISSANLSKYFTQEK-----------------------------------------------YVKKYNLCKNGLEYAHLFLKSIFENLHKVNLETVNDYLNDCLLIMFNITDISEDIFKTYLKVIPTRYRICTTPEMQAKVLINCCFDK 178

HSP 4 Score: 52.373 bits (124), Expect = 1.471e-6
Identity = 40/151 (26.49%), Postives = 79/151 (52.32%), Query Frame = -1 
Query:    1 IIIRKSFKESENNKSIIYGIINKFG-EILNIFQAINENILNVKDETF-FDAQFEEEISWDKAYQKNYLLTMDIPENILTTDYVKCRLAKQLQLYLSLEYKILFEVVQINDVIFCKAQSENEDSRTVIFGWQNQMNNEILGINEAIKENLIN 447
            +I  K+  E+E+++++I+G  N+   EIL I +AI EN++NV+ +T   + + ++E+SW  A ++  ++  +I +NI+T +Y+KC +      Y++ +                            I G  N  NN++L  NEAI+  +++
Sbjct:  436 VIFCKAQSENEDSRTVIFGWQNQMNNEILGINEAIKENLINVEYQTCRCNRENKDEMSWKNAIEEKLMIACEINKNIITEEYMKCLIESNTNEYINTD-------------------------EMEILGAVNTRNNKLLETNEAIEGKILD 561

HSP 5 Score: 51.2174 bits (121), Expect = 3.586e-6
Identity = 40/141 (28.37%), Postives = 72/141 (51.06%), Query Frame = -1 
Query:    1 ENNKSIIYGI-INKFGEILNIFQAINENILNVKDETF-FDAQFEEEISWDKAYQKNYLLTMDIPENILTTDYVKCRLAKQLQLYLSLEYKILFEVVQINDVIFCKAQSENEDSRTVIFGWQNQMNNEILGINEAIKENLIN 417
            ENN++II G+ +    EIL I +AI EN++NV+ +T   + + +EE+SW  A ++  ++  +I +NI+T +Y+KC +      Y++ +                            I G  N  NN++L  NEAI+  +++
Sbjct: 1951 ENNETIIIGVKLQDDDEILCIEEAIKENLINVEYQTCRCNRENKEEMSWKNAIEEKLMIACEINKNIITEEYMKCLIESNTNEYINTD-------------------------EMEILGAVNTRNNKLLETNEAIERKILD 2066
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BLAST of SMED30013549 vs. Planmine SMEST
Match: SMESG000045684.1 (SMESG000045684.1)

HSP 1 Score: 314.694 bits (805), Expect = 1.940e-144
Identity = 156/158 (98.73%), Postives = 157/158 (99.37%), Query Frame = -1 
Query:    1 NINFEKFETIIIRKSFKESENNKSIIYGIINKFGEILNIFQAINENILNVKDETFFDAQFEEEISWDKAYQKNYLLTMDIPENILTTDYVKCRLAKQLQLYLSLEYKILFEVVQINDVIFCKAQSENEDSRTVIFGWQNQMNNEILGINEAIKENLIN 474
            NINFEKFETIIIRKSFKESENNKSIIYGIINKFGEILNIFQAINENILNVKDETFFDAQFEEEISWDKAYQKNYLLTMDIPENILTTDY+KCRLAKQLQLYLSLEYKILFE VQINDVIFCKAQSENEDSRTVIFGWQNQMNNEILGINEAIKENLIN
Sbjct:  108 NINFEKFETIIIRKSFKESENNKSIIYGIINKFGEILNIFQAINENILNVKDETFFDAQFEEEISWDKAYQKNYLLTMDIPENILTTDYIKCRLAKQLQLYLSLEYKILFEGVQINDVIFCKAQSENEDSRTVIFGWQNQMNNEILGINEAIKENLIN 265

HSP 2 Score: 218.779 bits (556), Expect = 1.940e-144
Identity = 106/107 (99.07%), Postives = 106/107 (99.07%), Query Frame = -2 
Query:  525 MAYISNITEEQATELELTFPTDKTITSNSDDTLNGTDDLSEVSFMSLPEEKQTNNNRKIESVNFDKKYTSSYHLYLNEYSIKPMVQTVTIIRPNPFVAEPTTDTQII 845
            MAYISNITEEQATELELTFPTDKTITSNSDDTLNGTDDLSEVSFMSLPEEKQTNNNRKIESVNFDKKYTSSYHLYLNEYSIKPMVQTVTIIRPNPFVAEPT DTQII
Sbjct:    1 MAYISNITEEQATELELTFPTDKTITSNSDDTLNGTDDLSEVSFMSLPEEKQTNNNRKIESVNFDKKYTSSYHLYLNEYSIKPMVQTVTIIRPNPFVAEPTRDTQII 107

HSP 3 Score: 54.6842 bits (130), Expect = 3.015e-7
Identity = 41/151 (27.15%), Postives = 79/151 (52.32%), Query Frame = -1 
Query:    1 IIIRKSFKESENNKSIIYGIINKFG-EILNIFQAINENILNVKDETF-FDAQFEEEISWDKAYQKNYLLTMDIPENILTTDYVKCRLAKQLQLYLSLEYKILFEVVQINDVIFCKAQSENEDSRTVIFGWQNQMNNEILGINEAIKENLIN 447
            +I  K+  E+E+++++I+G  N+   EIL I +AI EN++NV+ +T   D + ++E+SW  A ++  ++  +I +NI+T +Y+KC +      Y++ +                            I G  N  NN++L  NEAI+  +++
Sbjct:  225 VIFCKAQSENEDSRTVIFGWQNQMNNEILGINEAIKENLINVEYQTCRCDRENKDEMSWKNAIEEKLMIACEINKNIITEEYMKCLIESNTNEYINTD-------------------------EMEILGAVNTRNNKLLETNEAIEGKILD 350

HSP 4 Score: 51.2174 bits (121), Expect = 3.416e-6
Identity = 40/141 (28.37%), Postives = 72/141 (51.06%), Query Frame = -1 
Query:    1 ENNKSIIYGI-INKFGEILNIFQAINENILNVKDETF-FDAQFEEEISWDKAYQKNYLLTMDIPENILTTDYVKCRLAKQLQLYLSLEYKILFEVVQINDVIFCKAQSENEDSRTVIFGWQNQMNNEILGINEAIKENLIN 417
            ENN++II G+ +    EIL I +AI EN++NV+ +T   + + +EE+SW  A ++  ++  +I +NI+T +Y+KC +      Y++ +                            I G  N  NN++L  NEAI+  +++
Sbjct: 1765 ENNETIIIGVKLQDDDEILCIEEAIKENLINVEYQTCRCNRENKEEMSWKNAIEEKLMIACEINKNIITEEYMKCLIESNTNEYINTD-------------------------EMEILGAVNTRNNKLLETNEAIERKILD 1880
[Close]
BLAST of SMED30013549 vs. Planmine SMEST
Match: SMESG000045684.1 (SMESG000045684.1)

HSP 1 Score: 314.694 bits (805), Expect = 1.180e-118
Identity = 156/158 (98.73%), Postives = 157/158 (99.37%), Query Frame = -1 
Query:    1 NINFEKFETIIIRKSFKESENNKSIIYGIINKFGEILNIFQAINENILNVKDETFFDAQFEEEISWDKAYQKNYLLTMDIPENILTTDYVKCRLAKQLQLYLSLEYKILFEVVQINDVIFCKAQSENEDSRTVIFGWQNQMNNEILGINEAIKENLIN 474
            NINFEKFETIIIRKSFKESENNKSIIYGIINKFGEILNIFQAINENILNVKDETFFDAQFEEEISWDKAYQKNYLLTMDIPENILTTDY+KCRLAKQLQLYLSLEYKILFE VQINDVIFCKAQSENEDSRTVIFGWQNQMNNEILGINEAIKENLIN
Sbjct:   64 NINFEKFETIIIRKSFKESENNKSIIYGIINKFGEILNIFQAINENILNVKDETFFDAQFEEEISWDKAYQKNYLLTMDIPENILTTDYIKCRLAKQLQLYLSLEYKILFEGVQINDVIFCKAQSENEDSRTVIFGWQNQMNNEILGINEAIKENLIN 221

HSP 2 Score: 132.88 bits (333), Expect = 1.180e-118
Identity = 62/63 (98.41%), Postives = 62/63 (98.41%), Query Frame = -2 
Query:  525 MSLPEEKQTNNNRKIESVNFDKKYTSSYHLYLNEYSIKPMVQTVTIIRPNPFVAEPTTDTQII 713
            MSLPEEKQTNNNRKIESVNFDKKYTSSYHLYLNEYSIKPMVQTVTIIRPNPFVAEPT DTQII
Sbjct:    1 MSLPEEKQTNNNRKIESVNFDKKYTSSYHLYLNEYSIKPMVQTVTIIRPNPFVAEPTRDTQII 63

HSP 3 Score: 54.6842 bits (130), Expect = 2.836e-7
Identity = 41/151 (27.15%), Postives = 79/151 (52.32%), Query Frame = -1 
Query:    1 IIIRKSFKESENNKSIIYGIINKFG-EILNIFQAINENILNVKDETF-FDAQFEEEISWDKAYQKNYLLTMDIPENILTTDYVKCRLAKQLQLYLSLEYKILFEVVQINDVIFCKAQSENEDSRTVIFGWQNQMNNEILGINEAIKENLIN 447
            +I  K+  E+E+++++I+G  N+   EIL I +AI EN++NV+ +T   D + ++E+SW  A ++  ++  +I +NI+T +Y+KC +      Y++ +                            I G  N  NN++L  NEAI+  +++
Sbjct:  181 VIFCKAQSENEDSRTVIFGWQNQMNNEILGINEAIKENLINVEYQTCRCDRENKDEMSWKNAIEEKLMIACEINKNIITEEYMKCLIESNTNEYINTD-------------------------EMEILGAVNTRNNKLLETNEAIEGKILD 306

HSP 4 Score: 51.2174 bits (121), Expect = 3.241e-6
Identity = 40/141 (28.37%), Postives = 72/141 (51.06%), Query Frame = -1 
Query:    1 ENNKSIIYGI-INKFGEILNIFQAINENILNVKDETF-FDAQFEEEISWDKAYQKNYLLTMDIPENILTTDYVKCRLAKQLQLYLSLEYKILFEVVQINDVIFCKAQSENEDSRTVIFGWQNQMNNEILGINEAIKENLIN 417
            ENN++II G+ +    EIL I +AI EN++NV+ +T   + + +EE+SW  A ++  ++  +I +NI+T +Y+KC +      Y++ +                            I G  N  NN++L  NEAI+  +++
Sbjct: 1721 ENNETIIIGVKLQDDDEILCIEEAIKENLINVEYQTCRCNRENKEEMSWKNAIEEKLMIACEINKNIITEEYMKCLIESNTNEYINTD-------------------------EMEILGAVNTRNNKLLETNEAIERKILD 1836
[Close]
BLAST of SMED30013549 vs. Planmine SMEST
Match: SMESG000045683.1 (SMESG000045683.1)

HSP 1 Score: 175.252 bits (443), Expect = 7.121e-52
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = -2 
Query: 1788 MLHFNSGYIFKELKEIQXXXXXXXXXXXXXXXEAIQSCLEITSIETFFGKFSNDLDQYFTNFPLANRNNEMFYMLSEISSANLSKYFTQEKVLLIICYVEFYSRF 2102
            MLHFNSGYIFKELKEIQKSENNISRISEIIKEEAIQSCLEITSIETFFGKFSNDLDQYFTNFPLANRNNEMFYMLSEISSANLSKYFTQEKVLLIICYVEFYSRF
Sbjct:    1 MLHFNSGYIFKELKEIQKSENNISRISEIIKEEAIQSCLEITSIETFFGKFSNDLDQYFTNFPLANRNNEMFYMLSEISSANLSKYFTQEKVLLIICYVEFYSRF 105
The following BLAST results are available for this feature:
BLAST of SMED30013549 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30013549 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30013549 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30013549 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30013549 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30013549 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30013549 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30013549 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
K1R1R13.360e-821.58Bullous pemphigoid antigen 1, isoforms 6/9/10 OS=C... [more]
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BLAST of SMED30013549 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30013549 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30013549 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30013549 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30013549 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30013549 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000017522.11.426e-673.00SMESG000017522.1[more]
SMESG000017522.12.931e-16699.37SMESG000017522.1[more]
SMESG000045684.11.940e-14498.73SMESG000045684.1[more]
SMESG000045684.11.180e-11898.73SMESG000045684.1[more]
SMESG000045683.17.121e-52100.00SMESG000045683.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30013549 ID=SMED30013549|Name=SMED30013549|organism=Schmidtea mediterranea sexual|type=transcript|length=2130bp
ATTGATCAAGTTCTCTTTAATTGCTTCGTTTATTCCCAATATTTCGTTAT
TCATTTGATTTTGCCAGCCAAAAATAACTGTTCTAGAATCTTCATTTTCA
GACTGAGCCTTACAAAATATGACATCATTTATTTGCACCACCTCAAAAAG
TATTTTATATTCTAAAGATAGATATAATTGAAGCTGTTTAGCAAGACGAC
ATTTTACATAGTCTGTCGTTAAAATATTTTCCGGAATGTCCATTGTAAGT
AAATAGTTTTTCTGATAGGCTTTATCCCAACTTATTTCTTCTTCAAATTG
TGCATCAAAAAACGTCTCATCTTTCACATTCAAAATGTTTTCGTTTATTG
CTTGAAAAATATTTAAAATCTCCCCAAATTTATTGATTATTCCATAAATT
ATTGATTTGTTATTTTCACTTTCTTTGAATGATTTTCTAATAATTATTGT
TTCAAATTTTTCGAAGTTTATGTTCTTAATTATTAATTTTCATTTAAATA
AACGATAAATAATGATAATGTTACTATTATTTGAGTGTCTGTTGTAGGTT
CGGCGACAAATGGATTTGGGCGTATTATAGTCACAGTTTGCACCATCGGT
TTGATTGAGTATTCATTCAGATAAAGATGATATGAAGATGTATATTTTTT
ATCAAAATTGACACTTTCGATTTTTCTGTTGTTATTCGTTTGTTTTTCTT
CTGGTAAAGACATAAAACTGACTTCTGAAAGATCGTCCGTTCCGTTTAAA
GTGTCGTCAGAATTTGAAGTGATTGTTTTATCGGTTGGAAATGTCAATTC
TAATTCTGTCGCTTGCTCTTCGGTTATATTGGAAATGTAAGCCATAGTGA
CGTAGCGAGGATTTTTTATTGTTATAACACACTCTTCTCTATTGTAATTT
TCATTTAAAATTTCATTGAAGTGTTTCGCATATAGCTTTGTGTCATTAAA
AAGTTGGATTGCGTTGCGTAAGCAGTGCCAGTAATTCACAGTTAGCATTT
CATAAGAAATATTTTCAATAGTCATATTTTCTAATTGATGACGAAATTGA
AAAATTTTCTCAGATTGAAATTTGTCTAATTCTAATGATCTAATGAGATT
GTCCAGAATGGAATAACAAATATTTTTGTCCACACAAGTAGTTCGTGTTA
ATTCTCTCTGATCTATTGCTATCATCAAAGAATTATAGATATAGTTCCGA
AATTGAGACTTTATCAACTCCCAAGTAGAAATAATTTGTCGTTTCATTAA
ATTGCAGCTATCAATTATTTCTTTATCAAAACCATCAAGAATTAGGAATA
ATGATGGCACATTTAGAATAAATTCTTCGACTTTGTCATCGACTTTCACG
GTCTTTTTGATTTTCCATAAATTCGTCTCAAAATCTTTGTCTAGCACTAT
CACGATTTCATGGCTATGAAGTTCAACTTTGTCAAAACAGCAATTTATTA
GAACTTTTGCTTGCATCTCAGGAGTGGTGCATATTCTATAGCGGGTTGGA
ATCACTTTCAAATAAGTTTTGAATATATCTTCAGAGATATCAGTAATATT
GAACATGATTAATAAACAATCGTTAAGATAGTCATTGACAGTTTCCAAAT
TCACTTTGTGCAGATTTTCAAAAATTGATTTTAAAAATAAATGAGCGTAT
TCCAGTCCATTTTTACACAGATTATATTTCTTGACATACTGGTGGTAATT
TTTAATGGATTCTATATGCATTTGAAGACAATGCATTAATTGATCAATCC
AGTCCCAGGCGAAATTGGTATCCATGGAAATGTTCTAGAATCGAGAATAA
AATTCAACATAGCAAATAATCAACAGAACCTTTTCTTGTGTAAAATATTT
TGACAAATTGGCAGAACTAATTTCACTTAACATGTAAAACATTTCGTTAT
TTCTGTTTGCTAATGGAAAATTAGTGAAATATTGATCTAGATCATTGCTG
AATTTTCCGAAAAATGTTTCTATCGATGTAATTTCTAAACAACTTTGAAT
AGCCTCTTCTTTAATTATCTCTGATATACGAGAAATATTGTTTTCAGATT
TTTGAATTTCTTTCAGTTCCTTAAATATATAACCACTATTGAAGTGTAAC
ATTTTGATTAACAAATATTTATTAGTTATA
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protein sequence of SMED30013549-orf-1

>SMED30013549-orf-1 ID=SMED30013549-orf-1|Name=SMED30013549-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=115bp
ITNKYLLIKMLHFNSGYIFKELKEIQKSENNISRISEIIKEEAIQSCLEI
TSIETFFGKFSNDLDQYFTNFPLANRNNEMFYMLSEISSANLSKYFTQEK
VLLIICYVEFYSRF*
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protein sequence of SMED30013549-orf-2

>SMED30013549-orf-2 ID=SMED30013549-orf-2|Name=SMED30013549-orf-2|organism=Schmidtea mediterranea sexual|type=polypeptide|length=431bp
MDTNFAWDWIDQLMHCLQMHIESIKNYHQYVKKYNLCKNGLEYAHLFLKS
IFENLHKVNLETVNDYLNDCLLIMFNITDISEDIFKTYLKVIPTRYRICT
TPEMQAKVLINCCFDKVELHSHEIVIVLDKDFETNLWKIKKTVKVDDKVE
EFILNVPSLFLILDGFDKEIIDSCNLMKRQIISTWELIKSQFRNYIYNSL
MIAIDQRELTRTTCVDKNICYSILDNLIRSLELDKFQSEKIFQFRHQLEN
MTIENISYEMLTVNYWHCLRNAIQLFNDTKLYAKHFNEILNENYNREECV
ITIKNPRYVTMAYISNITEEQATELELTFPTDKTITSNSDDTLNGTDDLS
EVSFMSLPEEKQTNNNRKIESVNFDKKYTSSYHLYLNEYSIKPMVQTVTI
IRPNPFVAEPTTDTQIIVTLSLFIVYLNEN*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000420parapharyngeal region
Vocabulary: INTERPRO
TermDefinition
IPR014712Clathrin_AP_dom2
IPR001101Plectin_repeat
Vocabulary: molecular function
TermDefinition
GO:0030276clathrin binding
GO:00055451-phosphatidylinositol binding
Vocabulary: biological process
TermDefinition
GO:0048268clathrin coat assembly
Vocabulary: cellular component
TermDefinition
GO:0030136clathrin-coated vesicle
GO:0005856cytoskeleton
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:1.20.58.60coord: 20..185
e-value: 2.1E-6
score: 29.6
NoneNo IPR availableGENE3DG3DSA:2.30.30.40coord: 97..168
e-value: 2.1E-6
score: 29.6