SMED30013542

Overview


Name	SMED30013542
Smed ID	SMED30013542
Length (bp)	337

Neoblast Clusters

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.

Expression of SMED30013542 (SMED30013542) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30013542 (SMED30013542) in cells (dots) of each of the 12 neoblast clusters.

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30013542 (SMED30013542) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30013542 (SMED30013542) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30013542

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 10

Expressed In	Reference Transcript	Published Transcript	Transcriptome	Publication
X1 cell	SMED30013542	SmedASXL_018657	SmedAsxl_ww_GCZZ01	PMID:26114597 Zhu et al., 2015
pharynx	SMED30013542	dd_Smed_v4_236_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
nervous system	SMED30013542	dd_Smed_v4_236_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
gut	SMED30013542	dd_Smed_v4_236_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
cephalic ganglia	SMED30013542	dd_Smed_v4_236_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
muscle cell	SMED30013542	dd_Smed_v4_236_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
neoblast	SMED30013542	dd_Smed_v4_236_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
parenchymal cell	SMED30013542	dd_Smed_v4_236_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
cilated neuron	SMED30013542	dd_Smed_v4_236_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
neoblast	SMED30013542	dd_Smed_v6_236_0	dd_Smed_v6	PMID:29674432 Plass et al., 2018

Note: Hover over icons to view figure legend

Alignments

SMED30013542 aligns in the following genomic locations:


Alignment Location	Alignment Score
v31.003211:26443..26878 -	1618
v31.002720:36820..37254 -	1593

Homology

[Close]

BLAST of SMED30013542 vs. Ensembl Human
Match: RPL38 (ribosomal protein L38 [Source:HGNC Symbol;Acc:HGNC:10349])

HSP 1 Score: 119.013 bits (297), Expect = 5.143e-36
Identity = 58/70 (82.86%), Postives = 65/70 (92.86%), Query Frame = -1

Query:   92 MPRQVNEIKDFLLIARRADAKSVKIKKNRENVKFKVRCSRFLYTLVITDKAKADKLKQSLPPNLSVKELK 301
            MPR++ EIKDFLL ARR DAKSVKIKKN++NVKFKVRCSR+LYTLVITDK KA+KLKQSLPP L+VKELK
Sbjct:    1 MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSLPPGLAVKELK 70

[Close]

Query:   92 MPRQVNEIKDFLLIARRADAKSVKIKKNRENVKFKVRCSRFLYTLVITDKAKADKLKQSLPPNLSVKELK 301
            MPR++ EIKDFLL ARR DAKSVKIKKN++NVKFKVRCSR+LYTLVITDK KA+KLKQSLPP L+VKELK
Sbjct:    1 MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSLPPGLAVKELK 70

[Close]

Query:   92 MPRQVNEIKDFLLIARRADAKSVKIKKNRENVKFKVRCSRFLYTLVITDKAKADKLKQSLPPNLSVKELK 301
            MPR++ EIKDFLL ARR DAKSVKIKKN++NVKFKVRCSR+LYTLVITDK KA+KLKQSLPP L+VKELK
Sbjct:    1 MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSLPPGLAVKELK 70

[Close]

BLAST of SMED30013542 vs. Ensembl Human
Match: RPL38 (ribosomal protein L38 [Source:HGNC Symbol;Acc:HGNC:10349])

HSP 1 Score: 110.538 bits (275), Expect = 7.648e-33
Identity = 57/70 (81.43%), Postives = 63/70 (90.00%), Query Frame = -1

Query:   92 MPRQVNEIKDFLLIARRADAKSVKIKKNRENVKFKVRCSRFLYTLVITDKAKADKLKQSLPPNLSVKELK 301
            MPR++ EIKDFLL ARR DAKSVKIKKN++NVKFKVRCSR+LYTLVITDK KA+KLKQSLPP   VKELK
Sbjct:    1 MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSLPP---VKELK 67

[Close]

BLAST of SMED30013542 vs. Ensembl Human
Match: RPL38 (ribosomal protein L38 [Source:HGNC Symbol;Acc:HGNC:10349])

HSP 1 Score: 108.227 bits (269), Expect = 5.979e-32
Identity = 52/63 (82.54%), Postives = 58/63 (92.06%), Query Frame = -1

Query:  113 MPRQVNEIKDFLLIARRADAKSVKIKKNRENVKFKVRCSRFLYTLVITDKAKADKLKQSLPPN 301
            MPR++ EIKDFLL ARR DAKSVKIKKN++NVKFKVRCSR+LYTLVITDK KA+KLKQSLPP 
Sbjct:    1 MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSLPPG 63

[Close]

BLAST of SMED30013542 vs. Ensembl Celegans
Match: rpl-38 (60S ribosomal protein L38 [Source:UniProtKB/Swiss-Prot;Acc:O17570])

HSP 1 Score: 103.99 bits (258), Expect = 1.509e-30
Identity = 50/70 (71.43%), Postives = 59/70 (84.29%), Query Frame = -1

Query:   92 MPRQVNEIKDFLLIARRADAKSVKIKKNRENVKFKVRCSRFLYTLVITDKAKADKLKQSLPPNLSVKELK 301
            MP+++ EIKDFL+ ARR DAKSVKIKKN  N KFKVRC+ +LYTLV+ DK KA+KLKQSLPP + VKELK
Sbjct:    1 MPKEIKEIKDFLVKARRKDAKSVKIKKNSNNTKFKVRCASYLYTLVVADKDKAEKLKQSLPPGIQVKELK 70

[Close]

Query:   92 MPRQVNEIKDFLLIARRADAKSVKIKKNRENVKFKVRCSRFLYTLVITDKAKADKLKQSLPPNLSVKELK 301
            MP+++ EIKDFL+ ARR DAKSVKIKKN  N KFKVRC+ +LYTLV+ DK KA+KLKQSLPP + VKELK
Sbjct:    1 MPKEIKEIKDFLVKARRKDAKSVKIKKNSNNTKFKVRCASYLYTLVVADKDKAEKLKQSLPPGIQVKELK 70

[Close]

Query:   92 MPRQVNEIKDFLLIARRADAKSVKIKKNRENVKFKVRCSRFLYTLVITDKAKADKLKQSLPPNLSVKELK 301
            MP+++ EIKDFL+ ARR DAKSVKIKKN  N KFKVRC+ +LYTLV+ DK KA+KLKQSLPP + VKELK
Sbjct:    1 MPKEIKEIKDFLVKARRKDAKSVKIKKNSNNTKFKVRCASYLYTLVVADKDKAEKLKQSLPPGIQVKELK 70

[Close]

Query:   92 MPRQVNEIKDFLLIARRADAKSVKIKKNRENVKFKVRCSRFLYTLVITDKAKADKLKQSLPPNLSVKELK 301
            MP+++ EIKDFL+ ARR DAKSVKIKKN  N KFKVRC+ +LYTLV+ DK KA+KLKQSLPP + VKELK
Sbjct:    1 MPKEIKEIKDFLVKARRKDAKSVKIKKNSNNTKFKVRCASYLYTLVVADKDKAEKLKQSLPPGIQVKELK 70

[Close]

Query:   92 MPRQVNEIKDFLLIARRADAKSVKIKKNRENVKFKVRCSRFLYTLVITDKAKADKLKQSLPPNLSVKELK 301
            MP+++ EIKDFL+ ARR DAKSVKIKKN  N KFKVRC+ +LYTLV+ DK KA+KLKQSLPP + VKELK
Sbjct:    1 MPKEIKEIKDFLVKARRKDAKSVKIKKNSNNTKFKVRCASYLYTLVVADKDKAEKLKQSLPPGIQVKELK 70

[Close]

BLAST of SMED30013542 vs. Ensembl Fly
Match: RpL38 (gene:FBgn0040007 transcript:FBtr0334985)

HSP 1 Score: 105.916 bits (263), Expect = 3.706e-31
Identity = 50/70 (71.43%), Postives = 60/70 (85.71%), Query Frame = -1

Query:   92 MPRQVNEIKDFLLIARRADAKSVKIKKNRENVKFKVRCSRFLYTLVITDKAKADKLKQSLPPNLSVKELK 301
            MPR++ E+KDFL  ARR+DA++VKIKKN  N KFK+RCSRFLYTLV+ DK KADK+KQSLPP L VKE+K
Sbjct:    1 MPREIKEVKDFLNKARRSDARAVKIKKNPTNTKFKIRCSRFLYTLVVQDKEKADKIKQSLPPGLQVKEVK 70

[Close]

BLAST of SMED30013542 vs. Ensembl Fly
Match: RpL38 (gene:FBgn0040007 transcript:FBtr0111120)

HSP 1 Score: 105.916 bits (263), Expect = 3.706e-31
Identity = 50/70 (71.43%), Postives = 60/70 (85.71%), Query Frame = -1

Query:   92 MPRQVNEIKDFLLIARRADAKSVKIKKNRENVKFKVRCSRFLYTLVITDKAKADKLKQSLPPNLSVKELK 301
            MPR++ E+KDFL  ARR+DA++VKIKKN  N KFK+RCSRFLYTLV+ DK KADK+KQSLPP L VKE+K
Sbjct:    1 MPREIKEVKDFLNKARRSDARAVKIKKNPTNTKFKIRCSRFLYTLVVQDKEKADKIKQSLPPGLQVKEVK 70

[Close]

BLAST of SMED30013542 vs. Ensembl Zebrafish
Match: rpl38 (ribosomal protein L38 [Source:ZFIN;Acc:ZDB-GENE-030131-8752])

HSP 1 Score: 119.013 bits (297), Expect = 3.272e-36
Identity = 58/70 (82.86%), Postives = 65/70 (92.86%), Query Frame = -1

Query:   92 MPRQVNEIKDFLLIARRADAKSVKIKKNRENVKFKVRCSRFLYTLVITDKAKADKLKQSLPPNLSVKELK 301
            MPR++ EIKDFLL ARR DAKSVKIKKN++NVKFKVRCSR+LYTLVITDK KA+KLKQSLPP L+VKELK
Sbjct:    1 MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSLPPGLAVKELK 70

[Close]

Query:   92 MPRQVNEIKDFLLIARRADAKSVKIKKNRENVKFKVRCSRFLYTLVITDKAKADKLKQSLPPNLSVKELK 301
            MPR++ EIKDFLL ARR DAKSVKIKKN++NVKFKVRCSR+LYTLVITDK KA+KLKQSLPP L+VKELK
Sbjct:    1 MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSLPPGLAVKELK 70

[Close]

BLAST of SMED30013542 vs. Ensembl Zebrafish
Match: LO018128.1 (pep chromosome:GRCz11:16:49249669:49253574:1 gene:ENSDARG00000111040.1 transcript:ENSDART00000181899.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:LO018128.1)

HSP 1 Score: 104.375 bits (259), Expect = 3.005e-30
Identity = 50/80 (62.50%), Postives = 62/80 (77.50%), Query Frame = -1

Query:  101 NICY----LNFLKMPRQVNEIKDFLLIARRADAKSVKIKKNRENVKFKVRCSRFLYTLVITDKAKADKLKQSLPPNLSVK 328
             IC+        ++PR++ EIKDFLL A+R DAKSVKIKKN++NVKFKVRCSR+LYTLVITDK KA+KLK S PP   ++
Sbjct:    4 TICFPPSLAGHGRLPREIEEIKDFLLTAKRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKHSGPPGTEIE 83

[Close]

BLAST of SMED30013542 vs. Ensembl Xenopus
Match: rpl38 (ribosomal protein L38 [Source:NCBI gene;Acc:448672])

HSP 1 Score: 118.627 bits (296), Expect = 5.435e-36
Identity = 58/70 (82.86%), Postives = 65/70 (92.86%), Query Frame = -1

Query:   92 MPRQVNEIKDFLLIARRADAKSVKIKKNRENVKFKVRCSRFLYTLVITDKAKADKLKQSLPPNLSVKELK 301
            MPR++ EIKDFLL ARR DAKSVKIKKN++NVKFKVRCS++LYTLVITDK KA+KLKQSLPP LSVKELK
Sbjct:    1 MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSKYLYTLVITDKEKAEKLKQSLPPGLSVKELK 70

[Close]

BLAST of SMED30013542 vs. Ensembl Xenopus
Match: rpl38 (ribosomal protein L38 [Source:NCBI gene;Acc:448672])

HSP 1 Score: 108.227 bits (269), Expect = 1.841e-31
Identity = 52/66 (78.79%), Postives = 61/66 (92.42%), Query Frame = -1

Query:  101 PRQVNEIKDFLLIARRADAKSVKIKKNRENVKFKVRCSRFLYTLVITDKAKADKLKQSLPPNLSVK 298
            PR++ EIKDFLL ARR DAKSVKIKKN++NVKFKVRCS++LYTLVITDK KA+KLKQSLPP L++K
Sbjct:    3 PRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSKYLYTLVITDKEKAEKLKQSLPPVLAMK 68

[Close]

BLAST of SMED30013542 vs. Ensembl Xenopus
Match: rpl38 (ribosomal protein L38 [Source:NCBI gene;Acc:448672])

HSP 1 Score: 107.457 bits (267), Expect = 4.513e-31
Identity = 51/63 (80.95%), Postives = 58/63 (92.06%), Query Frame = -1

Query:  113 MPRQVNEIKDFLLIARRADAKSVKIKKNRENVKFKVRCSRFLYTLVITDKAKADKLKQSLPPN 301
            MPR++ EIKDFLL ARR DAKSVKIKKN++NVKFKVRCS++LYTLVITDK KA+KLKQSLPP 
Sbjct:    1 MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSKYLYTLVITDKEKAEKLKQSLPPG 63

[Close]

BLAST of SMED30013542 vs. Ensembl Xenopus
Match: rpl38 (ribosomal protein L38 [Source:NCBI gene;Acc:448672])

HSP 1 Score: 105.145 bits (261), Expect = 1.393e-30
Identity = 50/62 (80.65%), Postives = 57/62 (91.94%), Query Frame = -1

Query:  113 PRQVNEIKDFLLIARRADAKSVKIKKNRENVKFKVRCSRFLYTLVITDKAKADKLKQSLPPN 298
            PR++ EIKDFLL ARR DAKSVKIKKN++NVKFKVRCS++LYTLVITDK KA+KLKQSLPP 
Sbjct:    3 PRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSKYLYTLVITDKEKAEKLKQSLPPG 64

[Close]

BLAST of SMED30013542 vs. Ensembl Mouse
Match: Rpl38 (ribosomal protein L38 [Source:MGI Symbol;Acc:MGI:1914921])

HSP 1 Score: 117.087 bits (292), Expect = 1.468e-35
Identity = 57/70 (81.43%), Postives = 65/70 (92.86%), Query Frame = -1

Query:   92 MPRQVNEIKDFLLIARRADAKSVKIKKNRENVKFKVRCSRFLYTLVITDKAKADKLKQSLPPNLSVKELK 301
            MPR++ EIKDFLL ARR DAKSVKIKKN++NVKFKVRCSR+LYTLVITDK KA+KLKQSLPP L+VK+LK
Sbjct:    1 MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSLPPGLAVKDLK 70

[Close]

Query:   92 MPRQVNEIKDFLLIARRADAKSVKIKKNRENVKFKVRCSRFLYTLVITDKAKADKLKQSLPPNLSVKELK 301
            MPR++ EIKDFLL ARR DAKSVKIKKN++NVKFKVRCSR+LYTLVITDK KA+KLKQSLPP L+VK+LK
Sbjct:    1 MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSLPPGLAVKDLK 70

[Close]

Query:   92 MPRQVNEIKDFLLIARRADAKSVKIKKNRENVKFKVRCSRFLYTLVITDKAKADKLKQSLPPNLSVKELK 301
            MPR++ EIKDFLL ARR DAKSVKIKKN++NVKFKVRCSR+LYTLVITDK KA+KLKQSLPP L+VK+LK
Sbjct:    1 MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSLPPGLAVKDLK 70

[Close]

Query:   92 MPRQVNEIKDFLLIARRADAKSVKIKKNRENVKFKVRCSRFLYTLVITDKAKADKLKQSLPPNLSVKELK 301
            MPR++ EIKDFLL ARR DAKSVKIKKN++NVKFKVRCSR+LYTLVITDK KA+KLKQSLPP L+VK+LK
Sbjct:    1 MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSLPPGLAVKDLK 70

[Close]

BLAST of SMED30013542 vs. UniProt/SwissProt
Match: sp|Q95V84|RL38_BRABE (60S ribosomal protein L38 OS=Branchiostoma belcheri OX=7741 GN=RPL38 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.577e-36
Identity = 59/70 (84.29%), Postives = 66/70 (94.29%), Query Frame = -1

Query:   92 MPRQVNEIKDFLLIARRADAKSVKIKKNRENVKFKVRCSRFLYTLVITDKAKADKLKQSLPPNLSVKELK 301
            MP+Q++EIKDFLL ARR DAKSVKIKKN++NVKFKVRCSR+LYTLVITDK KADKLKQSLPP L+VKELK
Sbjct:    1 MPKQIHEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKADKLKQSLPPGLAVKELK 70

[Close]

BLAST of SMED30013542 vs. UniProt/SwissProt
Match: sp|P63174|RL38_RAT (60S ribosomal protein L38 OS=Rattus norvegicus OX=10116 GN=Rpl38 PE=1 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 2.470e-35
Identity = 58/70 (82.86%), Postives = 65/70 (92.86%), Query Frame = -1

Query:   92 MPRQVNEIKDFLLIARRADAKSVKIKKNRENVKFKVRCSRFLYTLVITDKAKADKLKQSLPPNLSVKELK 301
            MPR++ EIKDFLL ARR DAKSVKIKKN++NVKFKVRCSR+LYTLVITDK KA+KLKQSLPP L+VKELK
Sbjct:    1 MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSLPPGLAVKELK 70

[Close]

BLAST of SMED30013542 vs. UniProt/SwissProt
Match: sp|P63173|RL38_HUMAN (60S ribosomal protein L38 OS=Homo sapiens OX=9606 GN=RPL38 PE=1 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 2.470e-35
Identity = 58/70 (82.86%), Postives = 65/70 (92.86%), Query Frame = -1

Query:   92 MPRQVNEIKDFLLIARRADAKSVKIKKNRENVKFKVRCSRFLYTLVITDKAKADKLKQSLPPNLSVKELK 301
            MPR++ EIKDFLL ARR DAKSVKIKKN++NVKFKVRCSR+LYTLVITDK KA+KLKQSLPP L+VKELK
Sbjct:    1 MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSLPPGLAVKELK 70

[Close]

BLAST of SMED30013542 vs. UniProt/SwissProt
Match: sp|Q32PB9|RL38_BOVIN (60S ribosomal protein L38 OS=Bos taurus OX=9913 GN=RPL38 PE=3 SV=4)

HSP 1 Score: 119.013 bits (297), Expect = 2.470e-35
Identity = 58/70 (82.86%), Postives = 65/70 (92.86%), Query Frame = -1

Query:   92 MPRQVNEIKDFLLIARRADAKSVKIKKNRENVKFKVRCSRFLYTLVITDKAKADKLKQSLPPNLSVKELK 301
            MPR++ EIKDFLL ARR DAKSVKIKKN++NVKFKVRCSR+LYTLVITDK KA+KLKQSLPP L+VKELK
Sbjct:    1 MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSLPPGLAVKELK 70

[Close]

BLAST of SMED30013542 vs. UniProt/SwissProt
Match: sp|Q56FC8|RL38_LYSTE (60S ribosomal protein L38 OS=Lysiphlebus testaceipes OX=77504 GN=RpL38 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.427e-35
Identity = 58/70 (82.86%), Postives = 63/70 (90.00%), Query Frame = -1

Query:   92 MPRQVNEIKDFLLIARRADAKSVKIKKNRENVKFKVRCSRFLYTLVITDKAKADKLKQSLPPNLSVKELK 301
            MPR++ EIKDFL+ ARR DAKSVKIKKN ENVKFKVRCSRFLYTLVITDK KA+KLKQSLPP L VKE+K
Sbjct:    1 MPREIKEIKDFLVTARRKDAKSVKIKKNAENVKFKVRCSRFLYTLVITDKEKAEKLKQSLPPGLQVKEVK 70

[Close]

BLAST of SMED30013542 vs. TrEMBL
Match: A0A060YGY4 (Uncharacterized protein (Fragment) OS=Oncorhynchus mykiss OX=8022 GN=GSONMT00021260001 PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.237e-34
Identity = 60/71 (84.51%), Postives = 66/71 (92.96%), Query Frame = -1

Query:   92 KMPRQVNEIKDFLLIARRADAKSVKIKKNRENVKFKVRCSRFLYTLVITDKAKADKLKQSLPPNLSVKELK 304
            KMPR++ EIKDFLL ARR DAKSVKIKKN+ENVKFKVRCSR+LYTLVITDK KA+KLKQSLPP L+VKELK
Sbjct:    8 KMPRKIEEIKDFLLTARRKDAKSVKIKKNKENVKFKVRCSRYLYTLVITDKEKAEKLKQSLPPGLAVKELK 78

[Close]

BLAST of SMED30013542 vs. TrEMBL
Match: A0A553MYK0 (Uncharacterized protein OS=Danionella translucida OX=623744 GN=DNTS_021938 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.572e-34
Identity = 60/70 (85.71%), Postives = 65/70 (92.86%), Query Frame = -1

Query:   92 MPRQVNEIKDFLLIARRADAKSVKIKKNRENVKFKVRCSRFLYTLVITDKAKADKLKQSLPPNLSVKELK 301
            MPRQ+ EIKDFLL ARR DAKSVKIKKN++NVKFKVRCSRFLYTLVITDK KA+KLKQSLPP L+VKELK
Sbjct:    1 MPRQIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRFLYTLVITDKEKAEKLKQSLPPGLAVKELK 70

[Close]

BLAST of SMED30013542 vs. TrEMBL
Match: C3Y9H8 (Uncharacterized protein OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_286891 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.673e-34
Identity = 59/70 (84.29%), Postives = 66/70 (94.29%), Query Frame = -1

Query:   92 MPRQVNEIKDFLLIARRADAKSVKIKKNRENVKFKVRCSRFLYTLVITDKAKADKLKQSLPPNLSVKELK 301
            MP+Q++EIKDFLL ARR DAKSVKIKKN++NVKFKVRCSR+LYTLVITDK KADKLKQSLPP L+VKELK
Sbjct:    1 MPKQIHEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKADKLKQSLPPGLAVKELK 70

[Close]

BLAST of SMED30013542 vs. TrEMBL
Match: A0A4W4FLF3 (Ribosomal protein L38 OS=Electrophorus electricus OX=8005 GN=RPL38 PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 8.491e-34
Identity = 59/78 (75.64%), Postives = 69/78 (88.46%), Query Frame = -1

Query:   92 ICYLNFLKMPRQVNEIKDFLLIARRADAKSVKIKKNRENVKFKVRCSRFLYTLVITDKAKADKLKQSLPPNLSVKELK 325
            +C  +  +MPR++ EIKDFLL ARR DAKSVKIKKN++NVKFKVRCSR+LYTLVITDK KA+KLKQSLPP L+VKELK
Sbjct:    1 MCSGSSCEMPRKIEEIKDFLLTARRKDAKSVKIKKNKQNVKFKVRCSRYLYTLVITDKEKAEKLKQSLPPGLAVKELK 78

[Close]

BLAST of SMED30013542 vs. TrEMBL
Match: I0FU17 (60S ribosomal protein L38 OS=Macaca mulatta OX=9544 GN=RPL38 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.123e-33
Identity = 59/70 (84.29%), Postives = 65/70 (92.86%), Query Frame = -1

Query:   92 MPRQVNEIKDFLLIARRADAKSVKIKKNRENVKFKVRCSRFLYTLVITDKAKADKLKQSLPPNLSVKELK 301
            MPRQ+ EIKDFLL ARR DAKSVKIKKN++NVKFKVRCSR+LYTLVITDK KA+KLKQSLPP L+VKELK
Sbjct:    1 MPRQIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSLPPGLAVKELK 70

[Close]

BLAST of SMED30013542 vs. Ensembl Cavefish
Match: RPL38 (ribosomal protein L38 [Source:HGNC Symbol;Acc:HGNC:10349])

HSP 1 Score: 110.153 bits (274), Expect = 7.404e-33
Identity = 54/65 (83.08%), Postives = 59/65 (90.77%), Query Frame = -1

Query:  107 MPRQVNEIKDFLLIARRADAKSVKIKKNRENVKFKVRCSRFLYTLVITDKAKADKLKQSLPPNLS 301
            MPR++ EIKDFLL ARR DAKSVKIKKN++NVKFKVRCSRFLYTLVITDK KA+KLKQSLPP  S
Sbjct:    1 MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRFLYTLVITDKEKAEKLKQSLPPGES 65

[Close]

BLAST of SMED30013542 vs. Ensembl Yeast
Match: RPL38 (Ribosomal 60S subunit protein L38; homologous to mammalian ribosomal protein L38, no bacterial homolog [Source:SGD;Acc:S000004317])

HSP 1 Score: 67.3958 bits (163), Expect = 9.821e-17
Identity = 38/78 (48.72%), Postives = 46/78 (58.97%), Query Frame = -1

Query:   95 MPRQVNEIKDFLLIARRADAKSVKIKKNRE---------NVKFKVRCSRFLYTLVITDKAKADKLKQSLPPNLSVKEL 301
            M R++ +IK FL + RRAD K+  +K N++           KFKVR S  LYTLVI D  KA KL QSLPP L V  L
Sbjct:    1 MAREITDIKQFLELTRRADVKTATVKINKKLNKAGKPFRQTKFKVRGSSSLYTLVINDAGKAKKLIQSLPPTLKVNRL 78

[Close]

BLAST of SMED30013542 vs. Ensembl Nematostella
Match: EDO48054 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RKV4])

HSP 1 Score: 117.087 bits (292), Expect = 5.847e-36
Identity = 56/70 (80.00%), Postives = 64/70 (91.43%), Query Frame = -1

Query:   92 MPRQVNEIKDFLLIARRADAKSVKIKKNRENVKFKVRCSRFLYTLVITDKAKADKLKQSLPPNLSVKELK 301
            MP+Q++EIKDFL+ ARR DAKSVKIKK +E+VKFKVRCSR+LYTLVI DK KADKLKQSLPP L+VKELK
Sbjct:    1 MPKQIHEIKDFLITARRKDAKSVKIKKTKESVKFKVRCSRYLYTLVIQDKEKADKLKQSLPPGLAVKELK 70

[Close]

BLAST of SMED30013542 vs. Ensembl Medaka
Match: rpl38 (ribosomal protein L38 [Source:ZFIN;Acc:ZDB-GENE-030131-8752])

HSP 1 Score: 119.013 bits (297), Expect = 2.756e-36
Identity = 58/70 (82.86%), Postives = 65/70 (92.86%), Query Frame = -1

Query:   92 MPRQVNEIKDFLLIARRADAKSVKIKKNRENVKFKVRCSRFLYTLVITDKAKADKLKQSLPPNLSVKELK 301
            MPR++ EIKDFLL ARR DAKSVKIKKN++NVKFKVRCSR+LYTLVITDK KA+KLKQSLPP L+VKELK
Sbjct:    1 MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSLPPGLAVKELK 70

[Close]

BLAST of SMED30013542 vs. Planmine SMEST
Match: SMESG000052945.1 (SMESG000052945.1)

HSP 1 Score: 138.272 bits (347), Expect = 4.012e-44
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = -1

Query:   92 MPRQVNEIKDFLLIARRADAKSVKIKKNRENVKFKVRCSRFLYTLVITDKAKADKLKQSLPPNLSVKELK 301
            MPRQVNEIKDFLLIARRADAKSVKIKKNRENVKFKVRCSRFLYTLVITDKAKADKLKQSLPPNLSVKELK
Sbjct:    1 MPRQVNEIKDFLLIARRADAKSVKIKKNRENVKFKVRCSRFLYTLVITDKAKADKLKQSLPPNLSVKELK 70

[Close]

BLAST of SMED30013542 vs. Planmine SMEST
Match: SMESG000027762.1 (SMESG000027762.1)

HSP 1 Score: 138.272 bits (347), Expect = 4.012e-44
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = -1

Query:   92 MPRQVNEIKDFLLIARRADAKSVKIKKNRENVKFKVRCSRFLYTLVITDKAKADKLKQSLPPNLSVKELK 301
            MPRQVNEIKDFLLIARRADAKSVKIKKNRENVKFKVRCSRFLYTLVITDKAKADKLKQSLPPNLSVKELK
Sbjct:    1 MPRQVNEIKDFLLIARRADAKSVKIKKNRENVKFKVRCSRFLYTLVITDKAKADKLKQSLPPNLSVKELK 70

The following BLAST results are available for this feature:

BLAST of SMED30013542 vs. Ensembl Human
BLAST of SMED30013542 vs. Ensembl Celegans
BLAST of SMED30013542 vs. Ensembl Fly
BLAST of SMED30013542 vs. Ensembl Zebrafish
BLAST of SMED30013542 vs. Ensembl Xenopus
BLAST of SMED30013542 vs. Ensembl Mouse
BLAST of SMED30013542 vs. UniProt/SwissProt
BLAST of SMED30013542 vs. TrEMBL
BLAST of SMED30013542 vs. Ensembl Cavefish
BLAST of SMED30013542 vs. Ensembl Sea Lamprey
BLAST of SMED30013542 vs. Ensembl Yeast
BLAST of SMED30013542 vs. Ensembl Nematostella
BLAST of SMED30013542 vs. Ensembl Medaka
BLAST of SMED30013542 vs. Planmine SMEST

BLAST of SMED30013542 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5


Match Name	E-value	Identity	Description
RPL38	5.143e-36	82.86	ribosomal protein L38 [Source:HGNC Symbol;Acc:HGNC...	[more]
RPL38	5.143e-36	82.86	ribosomal protein L38 [Source:HGNC Symbol;Acc:HGNC...	[more]
RPL38	5.143e-36	82.86	ribosomal protein L38 [Source:HGNC Symbol;Acc:HGNC...	[more]
RPL38	7.648e-33	81.43	ribosomal protein L38 [Source:HGNC Symbol;Acc:HGNC...	[more]
RPL38	5.979e-32	82.54	ribosomal protein L38 [Source:HGNC Symbol;Acc:HGNC...	[more]

BLAST of SMED30013542 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 5


Match Name	E-value	Identity	Description
rpl-38	1.509e-30	71.43	60S ribosomal protein L38 [Source:UniProtKB/Swiss...	[more]
rpl-38	1.509e-30	71.43	60S ribosomal protein L38 [Source:UniProtKB/Swiss...	[more]
rpl-38	1.509e-30	71.43	60S ribosomal protein L38 [Source:UniProtKB/Swiss...	[more]
rpl-38	1.509e-30	71.43	60S ribosomal protein L38 [Source:UniProtKB/Swiss...	[more]
rpl-38	1.509e-30	71.43	60S ribosomal protein L38 [Source:UniProtKB/Swiss...	[more]

BLAST of SMED30013542 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 2


Match Name	E-value	Identity	Description
RpL38	3.706e-31	71.43	gene:FBgn0040007 transcript:FBtr0334985	[more]
RpL38	3.706e-31	71.43	gene:FBgn0040007 transcript:FBtr0111120	[more]

BLAST of SMED30013542 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 3


Match Name	E-value	Identity	Description
rpl38	3.272e-36	82.86	ribosomal protein L38 [Source:ZFIN;Acc:ZDB-GENE-03...	[more]
rpl38	3.272e-36	82.86	ribosomal protein L38 [Source:ZFIN;Acc:ZDB-GENE-03...	[more]
LO018128.1	3.005e-30	62.50	pep chromosome:GRCz11:16:49249669:49253574:1 gene:...	[more]

BLAST of SMED30013542 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 4


Match Name	E-value	Identity	Description
rpl38	5.435e-36	82.86	ribosomal protein L38 [Source:NCBI gene;Acc:448672...	[more]
rpl38	1.841e-31	78.79	ribosomal protein L38 [Source:NCBI gene;Acc:448672...	[more]
rpl38	4.513e-31	80.95	ribosomal protein L38 [Source:NCBI gene;Acc:448672...	[more]
rpl38	1.393e-30	80.65	ribosomal protein L38 [Source:NCBI gene;Acc:448672...	[more]

BLAST of SMED30013542 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 4


Match Name	E-value	Identity	Description
Rpl38	1.468e-35	81.43	ribosomal protein L38 [Source:MGI Symbol;Acc:MGI:1...	[more]
Rpl38	1.468e-35	81.43	ribosomal protein L38 [Source:MGI Symbol;Acc:MGI:1...	[more]
Rpl38	1.468e-35	81.43	ribosomal protein L38 [Source:MGI Symbol;Acc:MGI:1...	[more]
Rpl38	1.468e-35	81.43	ribosomal protein L38 [Source:MGI Symbol;Acc:MGI:1...	[more]

BLAST of SMED30013542 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5


Match Name	E-value	Identity	Description
sp\|Q95V84\|RL38_BRABE	1.577e-36	84.29	60S ribosomal protein L38 OS=Branchiostoma belcher...	[more]
sp\|P63174\|RL38_RAT	2.470e-35	82.86	60S ribosomal protein L38 OS=Rattus norvegicus OX=...	[more]
sp\|P63173\|RL38_HUMAN	2.470e-35	82.86	60S ribosomal protein L38 OS=Homo sapiens OX=9606 ...	[more]
sp\|Q32PB9\|RL38_BOVIN	2.470e-35	82.86	60S ribosomal protein L38 OS=Bos taurus OX=9913 GN...	[more]
sp\|Q56FC8\|RL38_LYSTE	6.427e-35	82.86	60S ribosomal protein L38 OS=Lysiphlebus testaceip...	[more]

BLAST of SMED30013542 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A060YGY4	3.237e-34	84.51	Uncharacterized protein (Fragment) OS=Oncorhynchus...	[more]
A0A553MYK0	4.572e-34	85.71	Uncharacterized protein OS=Danionella translucida ...	[more]
C3Y9H8	4.673e-34	84.29	Uncharacterized protein OS=Branchiostoma floridae ...	[more]
A0A4W4FLF3	8.491e-34	75.64	Ribosomal protein L38 OS=Electrophorus electricus ...	[more]
I0FU17	1.123e-33	84.29	60S ribosomal protein L38 OS=Macaca mulatta OX=954...	[more]

BLAST of SMED30013542 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 1


Match Name	E-value	Identity	Description
RPL38	7.404e-33	83.08	ribosomal protein L38 [Source:HGNC Symbol;Acc:HGNC...	[more]

BLAST of SMED30013542 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SMED30013542 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 1


Match Name	E-value	Identity	Description
RPL38	9.821e-17	48.72	Ribosomal 60S subunit protein L38; homologous to m...	[more]

BLAST of SMED30013542 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 1


Match Name	E-value	Identity	Description
EDO48054	5.847e-36	80.00	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]

BLAST of SMED30013542 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 1


Match Name	E-value	Identity	Description
rpl38	2.756e-36	82.86	ribosomal protein L38 [Source:ZFIN;Acc:ZDB-GENE-03...	[more]

BLAST of SMED30013542 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 2


Match Name	E-value	Identity	Description
SMESG000052945.1	4.012e-44	100.00	SMESG000052945.1	[more]
SMESG000027762.1	4.012e-44	100.00	SMESG000027762.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediteranean smed_20140614 Interproscan	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Sequences

The following sequences are available for this feature:

transcript sequence

transcript sequence

>SMED30013542 ID=SMED30013542|Name=SMED30013542|organism=Schmidtea mediterranea sexual|type=transcript|length=337bp
GCATATATTGAATTTAAAAATCATAATATTTTGGTTCTTAGAATTTAAAA
AATTCAAACAATATTCCAAAATGTATTTCAAGAAATGATTATTTTAATTC
TTTGACAGACAAATTTGGTGGAAGCGATTGTTTCAATTTGTCAGCTTTTG
CCTTATCGGTAATAACTAGAGTGTATAGAAATCTACTGCATCTAACTTTA
AATTTTACATTTTCTCTGTTCTTTTTAATTTTGACAGATTTGGCATCTGC
TCTACGAGCAATCAAAAGAAAATCCTTAATTTCGTTAACCTGTCTAGGCA
TTTTTAAAAAGTTTAAATAACAAATATTTTAAAAATT

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **Planarian Anatomy**
Term	Definition
PLANA:0000026	gut
PLANA:0000101	muscle cell
PLANA:0000429	neoblast
PLANA:0002089	reproductive organ
PLANA:0002109	X1 cell

Vocabulary: **INTERPRO**
Term	Definition
IPR038464	Ribosomal_L38e_sf
IPR002675	Ribosomal_L38e

Vocabulary: **molecular function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **biological process**
Term	Definition
GO:0006412	translation

Vocabulary: **cellular component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

InterPro

Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038464	Ribosomal protein L38e superfamily	GENE3D	G3DSA:3.30.720.90		coord: 1..70 e-value: 5.1E-36 score: 124.6
IPR002675	Ribosomal protein L38e	PFAM	PF01781	Ribosomal_L38e	coord: 2..69 e-value: 1.1E-35 score: 121.6
IPR002675	Ribosomal protein L38e	PANTHER	PTHR10965	60S RIBOSOMAL PROTEIN L38	coord: 1..70
None	No IPR available	PANTHER	PTHR10965:SF7	60S RIBOSOMAL PROTEIN L38	coord: 1..70
None	No IPR available	PRODOM	PD010361		coord: 1..69 e-value: 1.0E-27 score: 301.0

Main menu

SMED30013542

Zeng et. al., 2018

▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Davies et. al., 2017

PAGE et. al., 2020

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 10

Owlery

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