LIM zinc-binding domain-containing protein

Overview
NameLIM zinc-binding domain-containing protein
Smed IDSMED30013498
Length (bp)255
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of LIM zinc-binding domain-containing protein (SMED30013498) t-SNE clustered cells

Violin plots show distribution of expression levels for LIM zinc-binding domain-containing protein (SMED30013498) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of LIM zinc-binding domain-containing protein (SMED30013498) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for LIM zinc-binding domain-containing protein (SMED30013498) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30013498

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 12

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
protonephridial progenitor cellSMED30013498SMESG000072162.1 SMED30007001smed_20140614PMID:29906446
Zeng et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
pharynxSMED30013498SMESG000072162.1 dd_Smed_v4_537_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
protonephridiaSMED30013498SMESG000072162.1 dd_Smed_v4_537_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30013498SMESG000072162.1 dd_Smed_v4_537_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
gutSMED30013498SMESG000072162.1 dd_Smed_v4_537_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30013498SMESG000072162.1 dd_Smed_v4_537_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30013498SMESG000072162.1 dd_Smed_v4_537_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30013498SMESG000072162.1 dd_Smed_v4_537_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30013498SMESG000072162.1 dd_Smed_v4_537_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
muscle cellSMED30013498SMESG000072162.1 dd_Smed_v4_537_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30013498SMESG000072162.1 Contig35325newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30013498SMESG000072162.1 Contig35325uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Human
Match: LIMA1 (LIM domain and actin binding 1 [Source:HGNC Symbol;Acc:HGNC:24636])

HSP 1 Score: 66.6254 bits (161), Expect = 5.234e-14
Identity = 29/62 (46.77%), Postives = 38/62 (61.29%), Query Frame = 1 
Query:   49 EKCQRCQKSVYANERMEAGSLIWHRLCFRCAQCDMSLKLNNYAQDKGVLYCKKHFNELIVAK 234
            E C  CQK+VY  ER+ A   ++H  CFRC+ C+  L L  YA   G +YCK HFN+L  +K
Sbjct:   85 ETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSK 146
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Human
Match: LIMA1 (LIM domain and actin binding 1 [Source:HGNC Symbol;Acc:HGNC:24636])

HSP 1 Score: 66.6254 bits (161), Expect = 5.606e-14
Identity = 29/62 (46.77%), Postives = 38/62 (61.29%), Query Frame = 1 
Query:   49 EKCQRCQKSVYANERMEAGSLIWHRLCFRCAQCDMSLKLNNYAQDKGVLYCKKHFNELIVAK 234
            E C  CQK+VY  ER+ A   ++H  CFRC+ C+  L L  YA   G +YCK HFN+L  +K
Sbjct:   86 ETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSK 147
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Human
Match: LIMA1 (LIM domain and actin binding 1 [Source:HGNC Symbol;Acc:HGNC:24636])

HSP 1 Score: 66.6254 bits (161), Expect = 6.410e-14
Identity = 29/62 (46.77%), Postives = 38/62 (61.29%), Query Frame = 1 
Query:   49 EKCQRCQKSVYANERMEAGSLIWHRLCFRCAQCDMSLKLNNYAQDKGVLYCKKHFNELIVAK 234
            E C  CQK+VY  ER+ A   ++H  CFRC+ C+  L L  YA   G +YCK HFN+L  +K
Sbjct:  389 ETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSK 450
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Human
Match: LIMA1 (LIM domain and actin binding 1 [Source:HGNC Symbol;Acc:HGNC:24636])

HSP 1 Score: 66.2402 bits (160), Expect = 6.845e-14
Identity = 29/62 (46.77%), Postives = 38/62 (61.29%), Query Frame = 1 
Query:   49 EKCQRCQKSVYANERMEAGSLIWHRLCFRCAQCDMSLKLNNYAQDKGVLYCKKHFNELIVAK 234
            E C  CQK+VY  ER+ A   ++H  CFRC+ C+  L L  YA   G +YCK HFN+L  +K
Sbjct:  229 ETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSK 290
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Human
Match: LIMA1 (LIM domain and actin binding 1 [Source:HGNC Symbol;Acc:HGNC:24636])

HSP 1 Score: 66.2402 bits (160), Expect = 7.275e-14
Identity = 29/62 (46.77%), Postives = 38/62 (61.29%), Query Frame = 1 
Query:   49 EKCQRCQKSVYANERMEAGSLIWHRLCFRCAQCDMSLKLNNYAQDKGVLYCKKHFNELIVAK 234
            E C  CQK+VY  ER+ A   ++H  CFRC+ C+  L L  YA   G +YCK HFN+L  +K
Sbjct:  388 ETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSK 449
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Celegans
Match: mlp-1 (MLP/CRP family (Muscle LIM Protein/Cysteine-rich Protein) [Source:UniProtKB/TrEMBL;Acc:Q9GP96])

HSP 1 Score: 54.6842 bits (130), Expect = 4.102e-11
Identity = 24/53 (45.28%), Postives = 30/53 (56.60%), Query Frame = 1 
Query:   46 NEKCQRCQKSVYANERMEAGSLIWHRLCFRCAQCDMSLKLNNYAQDKGVLYCK 204
            + KC +C KSVYA E M AG   WH+ CF+C  C+  L     A  +  LYCK
Sbjct:    8 HPKCPKCGKSVYAAEEMSAGGYKWHKFCFKCNMCNKLLDSCTVAPHEAELYCK 60
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Celegans
Match: mlp-1 (MLP/CRP family (Muscle LIM Protein/Cysteine-rich Protein) [Source:UniProtKB/TrEMBL;Acc:Q9GP96])

HSP 1 Score: 54.299 bits (129), Expect = 4.441e-11
Identity = 24/53 (45.28%), Postives = 30/53 (56.60%), Query Frame = 1 
Query:   46 NEKCQRCQKSVYANERMEAGSLIWHRLCFRCAQCDMSLKLNNYAQDKGVLYCK 204
            + KC +C KSVYA E M AG   WH+ CF+C  C+  L     A  +  LYCK
Sbjct:    8 HPKCPKCGKSVYAAEEMSAGGYKWHKFCFKCNMCNKLLDSCTVAPHEAELYCK 60
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Celegans
Match: mlp-1 (MLP/CRP family (Muscle LIM Protein/Cysteine-rich Protein) [Source:UniProtKB/TrEMBL;Acc:Q9GP96])

HSP 1 Score: 54.299 bits (129), Expect = 4.441e-11
Identity = 24/53 (45.28%), Postives = 30/53 (56.60%), Query Frame = 1 
Query:   46 NEKCQRCQKSVYANERMEAGSLIWHRLCFRCAQCDMSLKLNNYAQDKGVLYCK 204
            + KC +C KSVYA E M AG   WH+ CF+C  C+  L     A  +  LYCK
Sbjct:    8 HPKCPKCGKSVYAAEEMSAGGYKWHKFCFKCNMCNKLLDSCTVAPHEAELYCK 60
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Celegans
Match: mlp-1 (MLP/CRP family (Muscle LIM Protein/Cysteine-rich Protein) [Source:UniProtKB/TrEMBL;Acc:Q9GP96])

HSP 1 Score: 54.299 bits (129), Expect = 4.621e-11
Identity = 24/53 (45.28%), Postives = 30/53 (56.60%), Query Frame = 1 
Query:   46 NEKCQRCQKSVYANERMEAGSLIWHRLCFRCAQCDMSLKLNNYAQDKGVLYCK 204
            + KC +C KSVYA E M AG   WH+ CF+C  C+  L     A  +  LYCK
Sbjct:    8 HPKCPKCGKSVYAAEEMSAGGYKWHKFCFKCNMCNKLLDSCTVAPHEAELYCK 60
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Celegans
Match: mlp-1 (MLP/CRP family (Muscle LIM Protein/Cysteine-rich Protein) [Source:UniProtKB/TrEMBL;Acc:Q9GP96])

HSP 1 Score: 51.6026 bits (122), Expect = 6.419e-10
Identity = 22/54 (40.74%), Postives = 33/54 (61.11%), Query Frame = 1 
Query:   46 NEKCQRCQKSVYANERMEAGSLIWHRLCFRCAQCDMSLKLNNYAQDKGVLYCKK 207
            + KC +C KSVYA E M AG   WH+ CF+C+ C+  L   +  + +  L+CK+
Sbjct:    8 HPKCPKCGKSVYAAEEMSAGGYKWHKFCFKCSMCNKLLDSMSCCEHQAQLFCKQ 61
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Fly
Match: Mical (gene:FBgn0053208 transcript:FBtr0347213)

HSP 1 Score: 59.3066 bits (142), Expect = 1.027e-11
Identity = 24/66 (36.36%), Postives = 38/66 (57.58%), Query Frame = 1 
Query:   28 LQSQSTNEKCQRCQKSVYANERMEAGSLIWHRLCFRCAQCDMSLKLNNYAQDK----GVLYCKKHF 213
             + Q+ +EKC+ C+++VY  E+     L+ HR C +C  C  +L+L  YA D+    G  YC +HF
Sbjct: 1065 FKKQAASEKCRFCKQTVYLMEKTTVEGLVLHRNCLKCHHCHTNLRLGGYAFDRDDPQGRFYCTQHF 1130
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Fly
Match: Mical (gene:FBgn0053208 transcript:FBtr0347212)

HSP 1 Score: 59.3066 bits (142), Expect = 1.037e-11
Identity = 24/66 (36.36%), Postives = 38/66 (57.58%), Query Frame = 1 
Query:   28 LQSQSTNEKCQRCQKSVYANERMEAGSLIWHRLCFRCAQCDMSLKLNNYAQDK----GVLYCKKHF 213
             + Q+ +EKC+ C+++VY  E+     L+ HR C +C  C  +L+L  YA D+    G  YC +HF
Sbjct: 1065 FKKQAASEKCRFCKQTVYLMEKTTVEGLVLHRNCLKCHHCHTNLRLGGYAFDRDDPQGRFYCTQHF 1130
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Fly
Match: Mical (gene:FBgn0053208 transcript:FBtr0082210)

HSP 1 Score: 59.3066 bits (142), Expect = 1.037e-11
Identity = 24/66 (36.36%), Postives = 38/66 (57.58%), Query Frame = 1 
Query:   28 LQSQSTNEKCQRCQKSVYANERMEAGSLIWHRLCFRCAQCDMSLKLNNYAQDK----GVLYCKKHF 213
             + Q+ +EKC+ C+++VY  E+     L+ HR C +C  C  +L+L  YA D+    G  YC +HF
Sbjct: 1065 FKKQAASEKCRFCKQTVYLMEKTTVEGLVLHRNCLKCHHCHTNLRLGGYAFDRDDPQGRFYCTQHF 1130
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Fly
Match: Mical (gene:FBgn0053208 transcript:FBtr0082212)

HSP 1 Score: 59.3066 bits (142), Expect = 1.037e-11
Identity = 24/66 (36.36%), Postives = 38/66 (57.58%), Query Frame = 1 
Query:   28 LQSQSTNEKCQRCQKSVYANERMEAGSLIWHRLCFRCAQCDMSLKLNNYAQDK----GVLYCKKHF 213
             + Q+ +EKC+ C+++VY  E+     L+ HR C +C  C  +L+L  YA D+    G  YC +HF
Sbjct: 1065 FKKQAASEKCRFCKQTVYLMEKTTVEGLVLHRNCLKCHHCHTNLRLGGYAFDRDDPQGRFYCTQHF 1130
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Fly
Match: Mical (gene:FBgn0053208 transcript:FBtr0082209)

HSP 1 Score: 59.3066 bits (142), Expect = 1.037e-11
Identity = 24/66 (36.36%), Postives = 38/66 (57.58%), Query Frame = 1 
Query:   28 LQSQSTNEKCQRCQKSVYANERMEAGSLIWHRLCFRCAQCDMSLKLNNYAQDK----GVLYCKKHF 213
             + Q+ +EKC+ C+++VY  E+     L+ HR C +C  C  +L+L  YA D+    G  YC +HF
Sbjct: 1065 FKKQAASEKCRFCKQTVYLMEKTTVEGLVLHRNCLKCHHCHTNLRLGGYAFDRDDPQGRFYCTQHF 1130
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Zebrafish
Match: limd2 (LIM domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-120906-1])

HSP 1 Score: 62.3882 bits (150), Expect = 7.354e-14
Identity = 28/67 (41.79%), Postives = 40/67 (59.70%), Query Frame = 1 
Query:   37 QSTNEKCQRCQKSVYANERMEAGSLIWHRLCFRCAQCDMSLKLNNYAQDKGVLYCKKHFNELIVAKN 237
            ++  E C  C+K+VY  ER+ A +LI+H  CF C  C+  L L +YA  +G  YCK HF +L  +K 
Sbjct:   21 KTQKETCASCEKTVYPMERLVANNLIFHAACFCCKHCNTKLSLGSYAALQGEFYCKPHFQQLFKSKG 87
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Zebrafish
Match: lima1a (LIM domain and actin binding 1a [Source:ZFIN;Acc:ZDB-GENE-001120-1])

HSP 1 Score: 62.003 bits (149), Expect = 1.387e-12
Identity = 28/62 (45.16%), Postives = 36/62 (58.06%), Query Frame = 1 
Query:   49 EKCQRCQKSVYANERMEAGSLIWHRLCFRCAQCDMSLKLNNYAQDKGVLYCKKHFNELIVAK 234
            E C  C K+VY  E++ A   I+H  CFRCA C+  L L NYA     +YCK H+ +L  AK
Sbjct:  244 ETCVTCLKTVYPLEKLVANQQIYHNTCFRCAYCNTKLSLVNYASLHNNVYCKPHYCQLFKAK 305
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Zebrafish
Match: xirp2a (xin actin binding repeat containing 2a [Source:ZFIN;Acc:ZDB-GENE-040108-7])

HSP 1 Score: 62.003 bits (149), Expect = 1.480e-12
Identity = 27/63 (42.86%), Postives = 37/63 (58.73%), Query Frame = 1 
Query:   46 NEKCQRCQKSVYANERMEAGSLIWHRLCFRCAQCDMSLKLNNYAQDKGVLYCKKHFNELIVAK 234
            +E CQ C+K VY  E + A    +H+ CFRCA C+  L L  YA   G +YCK H+ +L  +K
Sbjct:  263 SELCQVCRKRVYPMESLIADKQNFHKTCFRCAHCNSQLSLGTYASLHGRMYCKPHYKQLFKSK 325
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Zebrafish
Match: mical2b (microtubule associated monooxygenase, calponin and LIM domain containing 2b [Source:NCBI gene;Acc:569564])

HSP 1 Score: 56.225 bits (134), Expect = 1.530e-10
Identity = 26/60 (43.33%), Postives = 35/60 (58.33%), Query Frame = 1 
Query:   46 NEKCQRCQKSVYANERMEAGSLIWHRLCFRCAQCDMSLKLNNYAQD--KGVLYCKKHFNE 219
            ++ C  CQK VY  ER+ A    +HR CFRC  C  SL+L  +  D  +G  YCK HF++
Sbjct: 1010 SDTCVFCQKRVYIMERLSAEGFFFHRECFRCHICGCSLRLGAHTFDSQQGTFYCKMHFSQ 1069
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Zebrafish
Match: mical2b (microtubule associated monooxygenase, calponin and LIM domain containing 2b [Source:NCBI gene;Acc:569564])

HSP 1 Score: 56.225 bits (134), Expect = 1.680e-10
Identity = 26/60 (43.33%), Postives = 35/60 (58.33%), Query Frame = 1 
Query:   46 NEKCQRCQKSVYANERMEAGSLIWHRLCFRCAQCDMSLKLNNYAQD--KGVLYCKKHFNE 219
            ++ C  CQK VY  ER+ A    +HR CFRC  C  SL+L  +  D  +G  YCK HF++
Sbjct:  744 SDTCVFCQKRVYIMERLSAEGFFFHRECFRCHICGCSLRLGAHTFDSQQGTFYCKMHFSQ 803
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Xenopus
Match: lima1 (LIM domain and actin binding 1 [Source:NCBI gene;Acc:779798])

HSP 1 Score: 67.0106 bits (162), Expect = 3.594e-14
Identity = 28/62 (45.16%), Postives = 38/62 (61.29%), Query Frame = 1 
Query:   49 EKCQRCQKSVYANERMEAGSLIWHRLCFRCAQCDMSLKLNNYAQDKGVLYCKKHFNELIVAK 234
            E C  CQK+VY  ER+ A + ++H  CFRC+ C   L L  +A   G +YCK HFN+L  +K
Sbjct:  354 EVCFSCQKTVYPMERLFANNQVYHNGCFRCSHCSTKLSLGTFASLHGTVYCKPHFNQLFKSK 415
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Xenopus
Match: pde9a (phosphodiesterase 9A [Source:Xenbase;Acc:XB-GENE-5917012])

HSP 1 Score: 65.0846 bits (157), Expect = 4.456e-14
Identity = 29/59 (49.15%), Postives = 33/59 (55.93%), Query Frame = 1 
Query:   28 LQSQSTNEKCQRCQKSVYANERMEAGSLIWHRLCFRCAQCDMSLKLNNYAQDKGVLYCK 204
             Q     EKC RCQKSVYA ER+  G   WH+ CFRCA C  SL      +  G +YCK
Sbjct:  111 TQKFGATEKCPRCQKSVYAAERVMGGGQPWHKTCFRCAFCGKSLDSTTVTEKDGEIYCK 169
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Xenopus
Match: ENSXETT00000049904.1 (pep primary_assembly:Xenopus_tropicalis_v9.1:9:64558417:64561350:-1 gene:ENSXETG00000020789.1 transcript:ENSXETT00000049904.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 57.7658 bits (138), Expect = 1.141e-11
Identity = 28/66 (42.42%), Postives = 35/66 (53.03%), Query Frame = 1 
Query:   40 STNEKCQRCQKSVYANERMEAGSLIWHRLCFRCAQCDMSLKLNNYAQDKGVLYCKKHFNELIVAKN 237
               + C  CQK VY  E + A   I+H  CFRC+ C   L L NYA   G +YCK HF +L  +K 
Sbjct:    5 PPQDTCIICQKKVYPMECLVADKQIFHNSCFRCSHCSNKLSLGNYASLHGQIYCKAHFKQLFKSKG 70
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Xenopus
Match: limd2 (uncharacterized loc100145002 [Source:Xenbase;Acc:XB-GENE-5749128])

HSP 1 Score: 58.151 bits (139), Expect = 1.394e-11
Identity = 28/66 (42.42%), Postives = 34/66 (51.52%), Query Frame = 1 
Query:   40 STNEKCQRCQKSVYANERMEAGSLIWHRLCFRCAQCDMSLKLNNYAQDKGVLYCKKHFNELIVAKN 237
            +  E C  CQK+VY  ER+ A   I+H  CF C  C   L L  YA   G  YCK HF +L  +K 
Sbjct:   83 AVRELCSSCQKTVYPMERLVADKHIFHNSCFCCKHCSAKLSLGTYAALHGEFYCKPHFQQLFKSKG 148
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Xenopus
Match: csrp2 (cysteine and glycine rich protein 2 [Source:NCBI gene;Acc:549369])

HSP 1 Score: 57.7658 bits (138), Expect = 2.375e-11
Identity = 28/67 (41.79%), Postives = 39/67 (58.21%), Query Frame = 1 
Query:    4 SNFLQFDQLQSQSTNEKCQRCQKSVYANERMEAGSLIWHRLCFRCAQCDMSLKLNNYAQDKGVLYCK 204
            SN  +F Q    +  EKC RC +SVYA E++      WH+ CFRCA+C  SL+     + +G +YCK
Sbjct:  107 SNPSKFAQKFGGA--EKCPRCNESVYAAEKIMGAGKPWHKNCFRCAKCGKSLESTTLTEKEGEIYCK 171
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Mouse
Match: Lima1 (LIM domain and actin binding 1 [Source:MGI Symbol;Acc:MGI:1920992])

HSP 1 Score: 67.0106 bits (162), Expect = 2.728e-14
Identity = 29/62 (46.77%), Postives = 38/62 (61.29%), Query Frame = 1 
Query:   49 EKCQRCQKSVYANERMEAGSLIWHRLCFRCAQCDMSLKLNNYAQDKGVLYCKKHFNELIVAK 234
            E C  CQK+VY  ER+ A   ++H  CFRC+ C+  L L  YA   G +YCK HFN+L  +K
Sbjct:  386 ESCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSK 447
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Mouse
Match: Lima1 (LIM domain and actin binding 1 [Source:MGI Symbol;Acc:MGI:1920992])

HSP 1 Score: 66.6254 bits (161), Expect = 4.137e-14
Identity = 29/62 (46.77%), Postives = 38/62 (61.29%), Query Frame = 1 
Query:   49 EKCQRCQKSVYANERMEAGSLIWHRLCFRCAQCDMSLKLNNYAQDKGVLYCKKHFNELIVAK 234
            E C  CQK+VY  ER+ A   ++H  CFRC+ C+  L L  YA   G +YCK HFN+L  +K
Sbjct:  226 ESCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSK 287
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Mouse
Match: Csrp3 (cysteine and glycine-rich protein 3 [Source:MGI Symbol;Acc:MGI:1330824])

HSP 1 Score: 63.929 bits (154), Expect = 7.778e-14
Identity = 32/68 (47.06%), Postives = 38/68 (55.88%), Query Frame = 1 
Query:    1 MSNFLQFDQLQSQSTNEKCQRCQKSVYANERMEAGSLIWHRLCFRCAQCDMSLKLNNYAQDKGVLYCK 204
             SN  +F     +S  EKC RC KSVYA E++  G   WH+ CFRCA C  SL+  N     G LYCK
Sbjct:  104 TSNPSKFSAKFGES--EKCPRCGKSVYAAEKVMGGGKPWHKTCFRCAICGKSLESTNVTDKDGELYCK 169
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Mouse
Match: Csrp3 (cysteine and glycine-rich protein 3 [Source:MGI Symbol;Acc:MGI:1330824])

HSP 1 Score: 63.929 bits (154), Expect = 7.778e-14
Identity = 32/68 (47.06%), Postives = 38/68 (55.88%), Query Frame = 1 
Query:    1 MSNFLQFDQLQSQSTNEKCQRCQKSVYANERMEAGSLIWHRLCFRCAQCDMSLKLNNYAQDKGVLYCK 204
             SN  +F     +S  EKC RC KSVYA E++  G   WH+ CFRCA C  SL+  N     G LYCK
Sbjct:  104 TSNPSKFSAKFGES--EKCPRCGKSVYAAEKVMGGGKPWHKTCFRCAICGKSLESTNVTDKDGELYCK 169
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Mouse
Match: Limd2 (LIM domain containing 2 [Source:MGI Symbol;Acc:MGI:1915053])

HSP 1 Score: 60.8474 bits (146), Expect = 3.604e-13
Identity = 28/63 (44.44%), Postives = 35/63 (55.56%), Query Frame = 1 
Query:   49 EKCQRCQKSVYANERMEAGSLIWHRLCFRCAQCDMSLKLNNYAQDKGVLYCKKHFNELIVAKN 237
            E C  CQK+VY  ER+ A  LI+H  CF C  C   L L +YA   G  YC+ HF +L  +K 
Sbjct:   39 ETCAACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYAAMHGEFYCRPHFQQLFKSKG 101
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. UniProt/SwissProt
Match: sp|O04193|WLI2A_ARATH (LIM domain-containing protein WLIM2a OS=Arabidopsis thaliana OX=3702 GN=WLIN2A PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.109e-14
Identity = 29/74 (39.19%), Postives = 48/74 (64.86%), Query Frame = 1 
Query:   43 TNEKCQRCQKSVYANERMEAGSLIWHRLCFRCAQCDMSLKLNNYAQDKGVLYCKKHFNELI-----VAKNTQTP 249
            T +KC+ C+K+VY  E + A  + +H+ CF+C+ C   L+L+NY+  +GV+YC+ HF +L       +KN Q+P
Sbjct:    6 TQQKCRACEKTVYPVELLSADGISYHKACFKCSHCKSRLQLSNYSSMEGVVYCRPHFEQLFKESGSFSKNFQSP 79

HSP 2 Score: 58.9214 bits (141), Expect = 4.701e-11
Identity = 25/66 (37.88%), Postives = 39/66 (59.09%), Query Frame = 1 
Query:   43 TNEKCQRCQKSVYANERMEAGSLIWHRLCFRCAQCDMSLKLNNYAQDKGVLYCKKHFNELIVAKNT 240
            T +KC  C K+VY  E++   S  +H+ CF+C+     +  +NYA  +G+LYCK HF +L   K +
Sbjct:  105 TQDKCATCTKTVYPIEKVTVESQCYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGS 170
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. UniProt/SwissProt
Match: sp|Q9M047|WLI2B_ARATH (LIM domain-containing protein WLIM2b OS=Arabidopsis thaliana OX=3702 GN=WLIM2B PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.684e-14
Identity = 31/74 (41.89%), Postives = 47/74 (63.51%), Query Frame = 1 
Query:   43 TNEKCQRCQKSVYANERMEAGSLIWHRLCFRCAQCDMSLKLNNYAQDKGVLYCKKHFNELI-----VAKNTQTP 249
            T +KC+ C+K+VYA E + A  + +H+ CF+C  C   L+L++Y+  +GVLYCK HF +L        KN Q+P
Sbjct:    6 TQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKPHFEQLFKESGSFNKNFQSP 79

HSP 2 Score: 61.2326 bits (147), Expect = 6.007e-12
Identity = 26/66 (39.39%), Postives = 39/66 (59.09%), Query Frame = 1 
Query:   43 TNEKCQRCQKSVYANERMEAGSLIWHRLCFRCAQCDMSLKLNNYAQDKGVLYCKKHFNELIVAKNT 240
            T EKC  C K+VY  E++   S  +H+ CF+C+     +  +NYA  +G+LYCK HF +L   K +
Sbjct:  104 TQEKCATCSKTVYPIEKVTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGS 169
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. UniProt/SwissProt
Match: sp|F1LR10|LIMA1_RAT (LIM domain and actin-binding protein 1 OS=Rattus norvegicus OX=10116 GN=Lima1 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 9.276e-14
Identity = 29/62 (46.77%), Postives = 38/62 (61.29%), Query Frame = 1 
Query:   49 EKCQRCQKSVYANERMEAGSLIWHRLCFRCAQCDMSLKLNNYAQDKGVLYCKKHFNELIVAK 234
            E C  CQK+VY  ER+ A   ++H  CFRC+ C+  L L  YA   G +YCK HFN+L  +K
Sbjct:  386 ESCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSK 447
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. UniProt/SwissProt
Match: sp|B0KYV5|LIMA1_PIG (LIM domain and actin-binding protein 1 OS=Sus scrofa OX=9823 GN=LIMA1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 1.467e-13
Identity = 29/62 (46.77%), Postives = 38/62 (61.29%), Query Frame = 1 
Query:   49 EKCQRCQKSVYANERMEAGSLIWHRLCFRCAQCDMSLKLNNYAQDKGVLYCKKHFNELIVAK 234
            E C  CQK+VY  ER+ A   ++H  CFRC+ C+  L L  YA   G +YCK HFN+L  +K
Sbjct:  384 ETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSK 445
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. UniProt/SwissProt
Match: sp|Q94JX5|WLIM1_ARATH (LIM domain-containing protein WLIM1 OS=Arabidopsis thaliana OX=3702 GN=WLIM1 PE=1 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 1.791e-13
Identity = 26/60 (43.33%), Postives = 41/60 (68.33%), Query Frame = 1 
Query:   40 STNEKCQRCQKSVYANERMEAGSLIWHRLCFRCAQCDMSLKLNNYAQDKGVLYCKKHFNE 219
             T +KC  C K+VY  +++ A + ++H+ CFRC  C  +LKL+NY   +GVLYC+ HF++
Sbjct:    5 GTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQ 64

HSP 2 Score: 55.4546 bits (132), Expect = 8.152e-10
Identity = 24/66 (36.36%), Postives = 36/66 (54.55%), Query Frame = 1 
Query:   40 STNEKCQRCQKSVYANERMEAGSLIWHRLCFRCAQCDMSLKLNNYAQDKGVLYCKKHFNELIVAKN 237
             T EKC  C K+VY  E++     ++H+ CF+C     ++  +NY   +G LYCK H  +LI  K 
Sbjct:  105 GTREKCVGCDKTVYPIEKVSVNGTLYHKSCFKCTHGGCTISPSNYIAHEGKLYCKHHHIQLIKEKG 170
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. TrEMBL
Match: A0A4S2KLP6 (LIM zinc-binding domain-containing protein OS=Opisthorchis felineus OX=147828 GN=CRM22_010787 PE=4 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.136e-31
Identity = 52/68 (76.47%), Postives = 57/68 (83.82%), Query Frame = 1 
Query:   49 EKCQRCQKSVYANERMEAGSLIWHRLCFRCAQCDMSLKLNNYAQDKGVLYCKKHFNELIVAKNTQTPI 252
            EKC RC KSVYANERMEAG  IWHRLCFRC+ CDMSL LNNYAQ   +LYCKKH+ E ++AKNTQTPI
Sbjct:    5 EKCVRCGKSVYANERMEAGDKIWHRLCFRCSVCDMSLNLNNYAQSDQILYCKKHYQENVLAKNTQTPI 72
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. TrEMBL
Match: A0A4S2KQY3 (LIM zinc-binding domain-containing protein OS=Opisthorchis felineus OX=147828 GN=CRM22_010787 PE=4 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.150e-31
Identity = 52/68 (76.47%), Postives = 57/68 (83.82%), Query Frame = 1 
Query:   49 EKCQRCQKSVYANERMEAGSLIWHRLCFRCAQCDMSLKLNNYAQDKGVLYCKKHFNELIVAKNTQTPI 252
            EKC RC KSVYANERMEAG  IWHRLCFRC+ CDMSL LNNYAQ   +LYCKKH+ E ++AKNTQTPI
Sbjct:    9 EKCVRCGKSVYANERMEAGDKIWHRLCFRCSVCDMSLNLNNYAQSDQILYCKKHYQENVLAKNTQTPI 76
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. TrEMBL
Match: G7Y2M9 (Cysteine and glycine-rich protein 3 OS=Clonorchis sinensis OX=79923 GN=Csrp3 PE=4 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.150e-31
Identity = 52/68 (76.47%), Postives = 57/68 (83.82%), Query Frame = 1 
Query:   49 EKCQRCQKSVYANERMEAGSLIWHRLCFRCAQCDMSLKLNNYAQDKGVLYCKKHFNELIVAKNTQTPI 252
            EKC RC KSVYANERMEAG  IWHRLCFRC+ CDMSL LNNYAQ   +LYCKKH+ E ++AKNTQTPI
Sbjct:    9 EKCVRCGKSVYANERMEAGDKIWHRLCFRCSVCDMSLNLNNYAQSDQILYCKKHYQENVLAKNTQTPI 76
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. TrEMBL
Match: A0A4E0RRF4 (Muscle LIM protein 1 OS=Fasciola hepatica OX=6192 GN=D915_000610 PE=4 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.271e-31
Identity = 51/68 (75.00%), Postives = 57/68 (83.82%), Query Frame = 1 
Query:   49 EKCQRCQKSVYANERMEAGSLIWHRLCFRCAQCDMSLKLNNYAQDKGVLYCKKHFNELIVAKNTQTPI 252
            EKC RC+KSVYANERMEAG  IWHRLCFRC+ CDM+L LNNY Q   VLYC KH+NE ++AKNTQTPI
Sbjct:    9 EKCVRCEKSVYANERMEAGDKIWHRLCFRCSVCDMALNLNNYKQSDQVLYCTKHYNENVLAKNTQTPI 76
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. TrEMBL
Match: A0A267GS96 (LIM zinc-binding domain-containing protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig003044g1 PE=4 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.871e-29
Identity = 46/67 (68.66%), Postives = 56/67 (83.58%), Query Frame = 1 
Query:   49 EKCQRCQKSVYANERMEAGSLIWHRLCFRCAQCDMSLKLNNYAQDKGVLYCKKHFNELIVAKNTQTP 249
            EKC RC KSVYA ERMEAG  IWH++CFRC +CDM L LNNYAQ++G LYCK H+N+++VA N+QTP
Sbjct:    9 EKCVRCTKSVYAAERMEAGGRIWHKMCFRCKECDMKLNLNNYAQNEGTLYCKTHYNKMVVALNSQTP 75
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Cavefish
Match: limd2 (LIM domain containing 2 [Source:NCBI gene;Acc:103034267])

HSP 1 Score: 63.929 bits (154), Expect = 1.280e-14
Identity = 28/67 (41.79%), Postives = 41/67 (61.19%), Query Frame = 1 
Query:   37 QSTNEKCQRCQKSVYANERMEAGSLIWHRLCFRCAQCDMSLKLNNYAQDKGVLYCKKHFNELIVAKN 237
            ++ +E C  CQK+VY  ER+ A +LI+H +CF C  C+  L L  YA  +G  YCK H+ +L  +K 
Sbjct:   21 KTPSETCAACQKTVYPMERLVANNLIFHTVCFCCKHCNAKLSLGTYAALQGEFYCKPHYQQLFKSKG 87
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Cavefish
Match: lima1a (LIM domain and actin binding 1a [Source:ZFIN;Acc:ZDB-GENE-001120-1])

HSP 1 Score: 66.6254 bits (161), Expect = 3.545e-14
Identity = 30/62 (48.39%), Postives = 36/62 (58.06%), Query Frame = 1 
Query:   49 EKCQRCQKSVYANERMEAGSLIWHRLCFRCAQCDMSLKLNNYAQDKGVLYCKKHFNELIVAK 234
            E C  C K+VY  ER+ A   I+H  CFRCA C+  L L NYA     +YCK HF +L  AK
Sbjct:  311 ESCVMCLKTVYPLERLVANQQIYHNTCFRCAHCNTKLSLVNYASLHSTVYCKPHFCQLFKAK 372
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Cavefish
Match: mical2a (microtubule associated monooxygenase, calponin and LIM domain containing 2 [Source:NCBI gene;Acc:103041185])

HSP 1 Score: 58.9214 bits (141), Expect = 1.541e-11
Identity = 28/68 (41.18%), Postives = 38/68 (55.88%), Query Frame = 1 
Query:   37 QSTNEKCQRCQKSVYANERMEAGSLIWHRLCFRCAQCDMSLKLNNYAQD--KGVLYCKKHFNELIVAK 234
             S  ++C  C+K VY  ER+ A  L +HR CFRC  C   L    +A D  +G LYCK HF++  + K
Sbjct:  956 HSLGDECHACKKRVYVAERLRAEGLFFHRECFRCDTCSAPLSQGGHAFDSEQGKLYCKLHFSQRNLGK 1023
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Cavefish
Match: mical2a (microtubule associated monooxygenase, calponin and LIM domain containing 2 [Source:NCBI gene;Acc:103041185])

HSP 1 Score: 58.9214 bits (141), Expect = 1.605e-11
Identity = 28/68 (41.18%), Postives = 38/68 (55.88%), Query Frame = 1 
Query:   37 QSTNEKCQRCQKSVYANERMEAGSLIWHRLCFRCAQCDMSLKLNNYAQD--KGVLYCKKHFNELIVAK 234
             S  ++C  C+K VY  ER+ A  L +HR CFRC  C   L    +A D  +G LYCK HF++  + K
Sbjct: 1008 HSLGDECHACKKRVYVAERLRAEGLFFHRECFRCDTCSAPLSQGGHAFDSEQGKLYCKLHFSQRNLGK 1075
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Cavefish
Match: mical2a (microtubule associated monooxygenase, calponin and LIM domain containing 2 [Source:NCBI gene;Acc:103041185])

HSP 1 Score: 58.9214 bits (141), Expect = 1.611e-11
Identity = 28/68 (41.18%), Postives = 38/68 (55.88%), Query Frame = 1 
Query:   37 QSTNEKCQRCQKSVYANERMEAGSLIWHRLCFRCAQCDMSLKLNNYAQD--KGVLYCKKHFNELIVAK 234
             S  ++C  C+K VY  ER+ A  L +HR CFRC  C   L    +A D  +G LYCK HF++  + K
Sbjct: 1156 HSLGDECHACKKRVYVAERLRAEGLFFHRECFRCDTCSAPLSQGGHAFDSEQGKLYCKLHFSQRNLGK 1223
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Sea Lamprey
Match: csrp2 (cysteine and glycine-rich protein 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1863])

HSP 1 Score: 60.8474 bits (146), Expect = 2.068e-13
Identity = 26/52 (50.00%), Postives = 31/52 (59.62%), Query Frame = 1 
Query:   49 EKCQRCQKSVYANERMEAGSLIWHRLCFRCAQCDMSLKLNNYAQDKGVLYCK 204
            EKC RC KSVYA ER+  G   WH+ CFRCA+C   L+        G +YCK
Sbjct:  121 EKCSRCDKSVYAAERVIGGGKPWHKQCFRCAKCGKGLESTTVTDKDGEIYCK 172
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Sea Lamprey
Match: csrp2 (cysteine and glycine-rich protein 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1863])

HSP 1 Score: 56.225 bits (134), Expect = 1.044e-11
Identity = 27/65 (41.54%), Postives = 35/65 (53.85%), Query Frame = 1 
Query:   49 EKCQRCQKSVYANERMEAGSLIWHRLCFRCAQCDMSLKLNNYAQDKGVLYCK----KHFNELIVA 231
            +KC RC +SVYA E++      WHR CFRC QC  SL+      + G +YCK    K+F    V 
Sbjct:  119 DKCPRCSQSVYAAEKVMGAGKPWHRSCFRCKQCGKSLESTTLNDNDGEIYCKACYAKNFGPKGVG 183

HSP 2 Score: 41.5874 bits (96), Expect = 3.249e-6
Identity = 19/66 (28.79%), Postives = 30/66 (45.45%), Query Frame = 1 
Query:   40 STNEKCQRCQKSVYANERMEAGSLIWHRLCFRCAQCDMSLKLNNYAQDKGVLYCKKHFNELIVAKN 237
                +C RC K+VY  E +      +HRLCFRC+ C   L     A     ++C+  + + +  K 
Sbjct:    6 GVTARCGRCAKAVYQAEEVICDGQRYHRLCFRCSVCRKGLDSTTLATHGDEIFCRSCYGKKLGPKG 71
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Sea Lamprey
Match: csrp2 (cysteine and glycine-rich protein 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1863])

HSP 1 Score: 56.225 bits (134), Expect = 1.098e-11
Identity = 27/65 (41.54%), Postives = 35/65 (53.85%), Query Frame = 1 
Query:   49 EKCQRCQKSVYANERMEAGSLIWHRLCFRCAQCDMSLKLNNYAQDKGVLYCK----KHFNELIVA 231
            +KC RC +SVYA E++      WHR CFRC QC  SL+      + G +YCK    K+F    V 
Sbjct:  118 DKCPRCSQSVYAAEKVMGAGKPWHRSCFRCKQCGKSLESTTLNDNDGEIYCKACYAKNFGPKGVG 182

HSP 2 Score: 41.5874 bits (96), Expect = 3.332e-6
Identity = 19/66 (28.79%), Postives = 30/66 (45.45%), Query Frame = 1 
Query:   40 STNEKCQRCQKSVYANERMEAGSLIWHRLCFRCAQCDMSLKLNNYAQDKGVLYCKKHFNELIVAKN 237
                +C RC K+VY  E +      +HRLCFRC+ C   L     A     ++C+  + + +  K 
Sbjct:    6 GVTARCGRCAKAVYQAEEVICDGQRYHRLCFRCSVCRKGLDSTTLATHGDEIFCRSCYGKKLGPKG 71
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Sea Lamprey
Match: csrp2 (cysteine and glycine-rich protein 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1863])

HSP 1 Score: 54.299 bits (129), Expect = 6.799e-11
Identity = 23/64 (35.94%), Postives = 31/64 (48.44%), Query Frame = 1 
Query:   49 EKCQRCQKSVYANERMEAGSLIWHRLCFRCAQCDMSLKLNNYAQDKGVLYCKKHFNELIVAKNT 240
            + C RC K VYA E++      WH+ CFRCA+C   L+        G LYCK  + +    K  
Sbjct:  117 DACSRCTKPVYAAEKIVGAGKPWHKSCFRCAKCGKGLESTTVTDRDGELYCKGCYAKYFGPKGV 180
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Sea Lamprey
Match: mical3b (Danio rerio microtubule associated monooxygenase, calponin and LIM domain containing 3b (mical3b), mRNA. [Source:RefSeq mRNA;Acc:NM_001353875])

HSP 1 Score: 54.6842 bits (130), Expect = 9.977e-11
Identity = 24/63 (38.10%), Postives = 36/63 (57.14%), Query Frame = 1 
Query:   31 QSQSTNEKCQRCQKSVYANERMEAGSLIWHRLCFRCAQCDMSLKLNNYAQD--KGVLYCKKHF 213
            Q+   ++ C  C + VY  ER+ A    +HR CF+C  CD++L+L  +A D   G  YCK H+
Sbjct:  753 QNLGGSDTCYFCGRRVYVMERLSAEGKFFHRGCFKCNYCDVTLRLGAFAFDVEDGKFYCKPHY 815
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Nematostella
Match: EDO50008 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RF11])

HSP 1 Score: 70.0922 bits (170), Expect = 1.808e-17
Identity = 31/79 (39.24%), Postives = 49/79 (62.03%), Query Frame = 1 
Query:    1 MSNFLQFDQLQSQSTNEKCQRCQKSVYANERMEAGSLIWHRLCFRCAQCDMSLKLNNYAQDKGVLYCKKHFNELIVAKN 237
            +S+F +  +  S    EKC+ C K+VY  ER+ A   ++H+ CF+C +C+ +L+L NYA  +G +YCK HF +L   K 
Sbjct:    5 LSSFQRLGRF-SAPPQEKCEVCNKTVYPMERLAADKKVYHKFCFKCNECNNTLRLGNYAALQGKVYCKPHFKQLFKVKG 82
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Nematostella
Match: LASP3 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RI32])

HSP 1 Score: 56.225 bits (134), Expect = 3.056e-11
Identity = 24/68 (35.29%), Postives = 35/68 (51.47%), Query Frame = 1 
Query:   46 NEKCQRCQKSVYANERMEAGSLIWHRLCFRCAQCDMSLKLNNYAQDKGVLYCKKHFNELIVAKNTQTP 249
            N +C +C K+VY+ E++     IWH+ CFRC  C+M+L + NY       YC  H+          TP
Sbjct:    2 NPQCTKCAKTVYSQEKLNCLDKIWHKTCFRCVVCNMALNMKNYKGYNKNPYCNAHYPTPKFTAVADTP 69
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Nematostella
Match: EDO28129 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7T7C3])

HSP 1 Score: 51.6026 bits (122), Expect = 7.971e-11
Identity = 21/52 (40.38%), Postives = 31/52 (59.62%), Query Frame = 1 
Query:   46 NEKCQRCQKSVYANERMEAGSLIWHRLCFRCAQCDMSLKLNNYAQDKGVLYC 201
            N +C +C K+VY+ E++     IWH+ CFRC  C+M+L + NY       YC
Sbjct:    2 NPQCTKCAKTVYSQEKLNCLDKIWHKTCFRCVVCNMALNMKNYKGYNKNPYC 53
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Nematostella
Match: LASP1 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RI30])

HSP 1 Score: 53.1434 bits (126), Expect = 3.043e-10
Identity = 20/56 (35.71%), Postives = 32/56 (57.14%), Query Frame = 1 
Query:   46 NEKCQRCQKSVYANERMEAGSLIWHRLCFRCAQCDMSLKLNNYAQDKGVLYCKKHF 213
            N  C RC+K+VY  E++     +WH+ CF+C  C M+L +  Y   + + YC  H+
Sbjct:    2 NPPCARCRKTVYPVEKLSCLDKVWHKGCFKCESCGMTLNMKTYKGYQKLPYCDAHY 57
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Nematostella
Match: EDO32616 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SUJ7])

HSP 1 Score: 47.7506 bits (112), Expect = 4.529e-9
Identity = 19/51 (37.25%), Postives = 29/51 (56.86%), Query Frame = 1 
Query:   49 EKCQRCQKSVYANERMEAGSLIWHRLCFRCAQCDMSLKLNNYAQDKGVLYC 201
             KC +C K VY  E++ +    WHR C RC +C+ +L   ++A+  G  YC
Sbjct:    2 PKCPKCSKEVYFAEKVTSLGKDWHRPCLRCQKCNKTLSPGSHAEHGGKPYC 52
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Medaka
Match: lima1a (LIM domain and actin-binding protein 1 [Source:NCBI gene;Acc:101156656])

HSP 1 Score: 68.9366 bits (167), Expect = 4.315e-15
Identity = 30/62 (48.39%), Postives = 38/62 (61.29%), Query Frame = 1 
Query:   49 EKCQRCQKSVYANERMEAGSLIWHRLCFRCAQCDMSLKLNNYAQDKGVLYCKKHFNELIVAK 234
            E C  CQK+VY  ER+ A   ++H  CFRC+ C+  L L NYA    V+YCK HF +L  AK
Sbjct:  269 ETCVTCQKTVYPLERLVANQHVYHSSCFRCSHCNTKLSLVNYASLHNVVYCKPHFCQLFKAK 330
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Medaka
Match: lima1a (LIM domain and actin-binding protein 1 [Source:NCBI gene;Acc:101156656])

HSP 1 Score: 68.9366 bits (167), Expect = 5.202e-15
Identity = 30/62 (48.39%), Postives = 38/62 (61.29%), Query Frame = 1 
Query:   49 EKCQRCQKSVYANERMEAGSLIWHRLCFRCAQCDMSLKLNNYAQDKGVLYCKKHFNELIVAK 234
            E C  CQK+VY  ER+ A   ++H  CFRC+ C+  L L NYA    V+YCK HF +L  AK
Sbjct:  292 ETCVTCQKTVYPLERLVANQHVYHSSCFRCSHCNTKLSLVNYASLHNVVYCKPHFCQLFKAK 353
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Medaka
Match: lima1a (LIM domain and actin-binding protein 1 [Source:NCBI gene;Acc:101156656])

HSP 1 Score: 68.5514 bits (166), Expect = 6.602e-15
Identity = 30/62 (48.39%), Postives = 38/62 (61.29%), Query Frame = 1 
Query:   49 EKCQRCQKSVYANERMEAGSLIWHRLCFRCAQCDMSLKLNNYAQDKGVLYCKKHFNELIVAK 234
            E C  CQK+VY  ER+ A   ++H  CFRC+ C+  L L NYA    V+YCK HF +L  AK
Sbjct:  354 ETCVTCQKTVYPLERLVANQHVYHSSCFRCSHCNTKLSLVNYASLHNVVYCKPHFCQLFKAK 415
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Medaka
Match: ENSORLT00000019196.2 (LIM domain and actin-binding protein 1 [Source:NCBI gene;Acc:101163320])

HSP 1 Score: 63.929 bits (154), Expect = 2.513e-13
Identity = 28/62 (45.16%), Postives = 38/62 (61.29%), Query Frame = 1 
Query:   49 EKCQRCQKSVYANERMEAGSLIWHRLCFRCAQCDMSLKLNNYAQDKGVLYCKKHFNELIVAK 234
            E C  CQK+V+  ER+ +   ++H+ CFRC  C+  L L NYA   G  YCK HF++L  AK
Sbjct:  285 EVCVVCQKTVFQLERLMSHQHVYHKHCFRCFHCNTKLSLMNYASLHGNNYCKPHFSQLFKAK 346
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Medaka
Match: limd2 (LIM domain containing 2 [Source:NCBI gene;Acc:101173786])

HSP 1 Score: 56.225 bits (134), Expect = 1.756e-11
Identity = 25/67 (37.31%), Postives = 37/67 (55.22%), Query Frame = 1 
Query:   37 QSTNEKCQRCQKSVYANERMEAGSLIWHRLCFRCAQCDMSLKLNNYAQDKGVLYCKKHFNELIVAKN 237
            ++  E C  C+K+VY  ER+ A   ++H  CF C  C+  L L  +A  +G  YCK HF +L  +K 
Sbjct:   22 KTQKEVCTSCEKTVYPMERLVANDQVFHLSCFCCKHCNAKLSLGTFAALQGEFYCKPHFQQLFKSKG 88
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Planmine SMEST
Match: SMESG000072162.1 (SMESG000072162.1)

HSP 1 Score: 152.14 bits (383), Expect = 4.786e-50
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 1 
Query:   40 STNEKCQRCQKSVYANERMEAGSLIWHRLCFRCAQCDMSLKLNNYAQDKGVLYCKKHFNELIVAKNTQTPI 252
            STNEKCQRCQKSVYANERMEAGSLIWHRLCFRCAQCDMSLKLNNYAQDKGVLYCKKHFNELIVAKNTQTPI
Sbjct:    5 STNEKCQRCQKSVYANERMEAGSLIWHRLCFRCAQCDMSLKLNNYAQDKGVLYCKKHFNELIVAKNTQTPI 75
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Planmine SMEST
Match: SMESG000002154.1 (SMESG000002154.1)

HSP 1 Score: 60.4622 bits (145), Expect = 1.476e-12
Identity = 25/68 (36.76%), Postives = 36/68 (52.94%), Query Frame = 1 
Query:   46 NEKCQRCQKSVYANERMEAGSLIWHRLCFRCAQCDMSLKLNNYAQDKGVLYCKKHFNELIVAKNTQTP 249
            N  C RC K+VY  E++      WH++CF+C QCD++L + NY     + YC  H+        T TP
Sbjct:    2 NPLCGRCNKTVYPVEKLSCLDKYWHKMCFKCTQCDLTLTMKNYKGYNKMPYCSTHYPTQKFTTVTDTP 69
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Planmine SMEST
Match: SMESG000026096.1 (SMESG000026096.1)

HSP 1 Score: 59.6918 bits (143), Expect = 7.060e-12
Identity = 25/56 (44.64%), Postives = 36/56 (64.29%), Query Frame = 1 
Query:   55 CQRCQKSVYANERMEAGSLIWHRLCFRCAQCDMSLKLNNYAQDKGVLYCKKHFNEL 222
            C  C + VY  E++   +L++HR CF+C +C   L +NN+A + G LYCK HF EL
Sbjct:  205 CTSCGEKVYITEKLVIDNLLYHRQCFKCMKCRRILSMNNFASNSGRLYCKPHFLEL 260
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Planmine SMEST
Match: SMESG000044487.1 (SMESG000044487.1)

HSP 1 Score: 50.8322 bits (120), Expect = 8.197e-9
Identity = 22/59 (37.29%), Postives = 33/59 (55.93%), Query Frame = 1 
Query:   46 NEKCQRCQKSVYANERMEAGSLIWHRLCFRCAQCDMSLKLNNYAQDKGVLYCKKHFNEL 222
            N  C  C K VY  E++ A    +H+ CFRC++C  +L   NY+ ++   YC  H+ EL
Sbjct:  200 NVNCCVCNKKVYPMEKLVANDKTFHKTCFRCSKCKSALSTGNYSFNQQRPYCTPHYIEL 258
[Close]
BLAST of LIM zinc-binding domain-containing protein vs. Planmine SMEST
Match: SMESG000049512.1 (SMESG000049512.1)

HSP 1 Score: 48.521 bits (114), Expect = 3.174e-8
Identity = 20/53 (37.74%), Postives = 32/53 (60.38%), Query Frame = 1 
Query:   46 NEKCQRCQKSVYANERMEAGSLIWHRLCFRCAQCDMSLKLNNYAQDKGVLYCK 204
            +E C +C+K+VYA E+  A + +WH +C +C  C+  L     A+ +  LYCK
Sbjct:    2 SEICPKCKKAVYAAEKKLAANKVWHSMCLKCGMCNKMLDSTTVAEHENELYCK 54
The following BLAST results are available for this feature:
BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5
Match NameE-valueIdentityDescription
LIMA15.234e-1446.77LIM domain and actin binding 1 [Source:HGNC Symbol... [more]
LIMA15.606e-1446.77LIM domain and actin binding 1 [Source:HGNC Symbol... [more]
LIMA16.410e-1446.77LIM domain and actin binding 1 [Source:HGNC Symbol... [more]
LIMA16.845e-1446.77LIM domain and actin binding 1 [Source:HGNC Symbol... [more]
LIMA17.275e-1446.77LIM domain and actin binding 1 [Source:HGNC Symbol... [more]
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BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 5
Match NameE-valueIdentityDescription
mlp-14.102e-1145.28MLP/CRP family (Muscle LIM Protein/Cysteine-rich P... [more]
mlp-14.441e-1145.28MLP/CRP family (Muscle LIM Protein/Cysteine-rich P... [more]
mlp-14.441e-1145.28MLP/CRP family (Muscle LIM Protein/Cysteine-rich P... [more]
mlp-14.621e-1145.28MLP/CRP family (Muscle LIM Protein/Cysteine-rich P... [more]
mlp-16.419e-1040.74MLP/CRP family (Muscle LIM Protein/Cysteine-rich P... [more]
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BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 5
Match NameE-valueIdentityDescription
Mical1.027e-1136.36gene:FBgn0053208 transcript:FBtr0347213[more]
Mical1.037e-1136.36gene:FBgn0053208 transcript:FBtr0347212[more]
Mical1.037e-1136.36gene:FBgn0053208 transcript:FBtr0082210[more]
Mical1.037e-1136.36gene:FBgn0053208 transcript:FBtr0082212[more]
Mical1.037e-1136.36gene:FBgn0053208 transcript:FBtr0082209[more]
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BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
limd27.354e-1441.79LIM domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-... [more]
lima1a1.387e-1245.16LIM domain and actin binding 1a [Source:ZFIN;Acc:Z... [more]
xirp2a1.480e-1242.86xin actin binding repeat containing 2a [Source:ZFI... [more]
mical2b1.530e-1043.33microtubule associated monooxygenase, calponin and... [more]
mical2b1.680e-1043.33microtubule associated monooxygenase, calponin and... [more]
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BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5
Match NameE-valueIdentityDescription
lima13.594e-1445.16LIM domain and actin binding 1 [Source:NCBI gene;A... [more]
pde9a4.456e-1449.15phosphodiesterase 9A [Source:Xenbase;Acc:XB-GENE-5... [more]
ENSXETT00000049904.11.141e-1142.42pep primary_assembly:Xenopus_tropicalis_v9.1:9:645... [more]
limd21.394e-1142.42uncharacterized loc100145002 [Source:Xenbase;Acc:X... [more]
csrp22.375e-1141.79cysteine and glycine rich protein 2 [Source:NCBI g... [more]
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BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5
Match NameE-valueIdentityDescription
Lima12.728e-1446.77LIM domain and actin binding 1 [Source:MGI Symbol;... [more]
Lima14.137e-1446.77LIM domain and actin binding 1 [Source:MGI Symbol;... [more]
Csrp37.778e-1447.06cysteine and glycine-rich protein 3 [Source:MGI Sy... [more]
Csrp37.778e-1447.06cysteine and glycine-rich protein 3 [Source:MGI Sy... [more]
Limd23.604e-1344.44LIM domain containing 2 [Source:MGI Symbol;Acc:MGI... [more]
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BLAST of LIM zinc-binding domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|O04193|WLI2A_ARATH1.109e-1439.19LIM domain-containing protein WLIM2a OS=Arabidopsi... [more]
sp|Q9M047|WLI2B_ARATH1.684e-1441.89LIM domain-containing protein WLIM2b OS=Arabidopsi... [more]
sp|F1LR10|LIMA1_RAT9.276e-1446.77LIM domain and actin-binding protein 1 OS=Rattus n... [more]
sp|B0KYV5|LIMA1_PIG1.467e-1346.77LIM domain and actin-binding protein 1 OS=Sus scro... [more]
sp|Q94JX5|WLIM1_ARATH1.791e-1343.33LIM domain-containing protein WLIM1 OS=Arabidopsis... [more]
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BLAST of LIM zinc-binding domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A4S2KLP61.136e-3176.47LIM zinc-binding domain-containing protein OS=Opis... [more]
A0A4S2KQY31.150e-3176.47LIM zinc-binding domain-containing protein OS=Opis... [more]
G7Y2M91.150e-3176.47Cysteine and glycine-rich protein 3 OS=Clonorchis ... [more]
A0A4E0RRF42.271e-3175.00Muscle LIM protein 1 OS=Fasciola hepatica OX=6192 ... [more]
A0A267GS961.871e-2968.66LIM zinc-binding domain-containing protein OS=Macr... [more]
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BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
limd21.280e-1441.79LIM domain containing 2 [Source:NCBI gene;Acc:1030... [more]
lima1a3.545e-1448.39LIM domain and actin binding 1a [Source:ZFIN;Acc:Z... [more]
mical2a1.541e-1141.18microtubule associated monooxygenase, calponin and... [more]
mical2a1.605e-1141.18microtubule associated monooxygenase, calponin and... [more]
mical2a1.611e-1141.18microtubule associated monooxygenase, calponin and... [more]
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BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 5
Match NameE-valueIdentityDescription
csrp22.068e-1350.00cysteine and glycine-rich protein 2 [Source:ZFIN;A... [more]
csrp21.044e-1141.54cysteine and glycine-rich protein 2 [Source:ZFIN;A... [more]
csrp21.098e-1141.54cysteine and glycine-rich protein 2 [Source:ZFIN;A... [more]
csrp26.799e-1135.94cysteine and glycine-rich protein 2 [Source:ZFIN;A... [more]
mical3b9.977e-1138.10Danio rerio microtubule associated monooxygenase, ... [more]
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BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 5
Match NameE-valueIdentityDescription
EDO500081.808e-1739.24Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
LASP33.056e-1135.29Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO281297.971e-1140.38Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
LASP13.043e-1035.71Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO326164.529e-937.25Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of LIM zinc-binding domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5
Match NameE-valueIdentityDescription
lima1a4.315e-1548.39LIM domain and actin-binding protein 1 [Source:NCB... [more]
lima1a5.202e-1548.39LIM domain and actin-binding protein 1 [Source:NCB... [more]
lima1a6.602e-1548.39LIM domain and actin-binding protein 1 [Source:NCB... [more]
ENSORLT00000019196.22.513e-1345.16LIM domain and actin-binding protein 1 [Source:NCB... [more]
limd21.756e-1137.31LIM domain containing 2 [Source:NCBI gene;Acc:1011... [more]
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BLAST of LIM zinc-binding domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000072162.14.786e-50100.00SMESG000072162.1[more]
SMESG000002154.11.476e-1236.76SMESG000002154.1[more]
SMESG000026096.17.060e-1244.64SMESG000026096.1[more]
SMESG000044487.18.197e-937.29SMESG000044487.1[more]
SMESG000049512.13.174e-837.74SMESG000049512.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30013498 ID=SMED30013498|Name=LIM zinc-binding domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=255bp
ATGTCGAATTTCCTTCAGTTCGATCAATTACAGTCTCAATCAACCAACGA
GAAATGTCAAAGATGCCAGAAATCTGTCTATGCTAATGAAAGAATGGAAG
CTGGGAGTTTAATTTGGCACAGACTTTGTTTTCGATGTGCTCAATGTGAC
ATGTCATTGAAACTGAATAATTACGCCCAGGACAAGGGAGTTCTATATTG
CAAGAAACATTTCAATGAATTGATAGTTGCTAAAAATACACAAACACCGA
TTTAA
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000011protonephridial progenitor cell
PLANA:0000020protonephridia
PLANA:0000101muscle cell
Vocabulary: INTERPRO
TermDefinition
IPR001781Znf_LIM
Vocabulary: molecular function
TermDefinition
GO:0008270zinc ion binding
GO:0046872metal ion binding
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001781Zinc finger, LIM-typeSMARTSM00132lim_4coord: 18..70
e-value: 4.8E-13
score: 59.3
IPR001781Zinc finger, LIM-typePFAMPF00412LIMcoord: 19..73
e-value: 1.1E-12
score: 48.0
IPR001781Zinc finger, LIM-typePROSITEPS00478LIM_DOMAIN_1coord: 19..53
IPR001781Zinc finger, LIM-typePROSITEPS50023LIM_DOMAIN_2coord: 17..77
score: 13.434
NoneNo IPR availableGENE3DG3DSA:2.10.110.10coord: 5..78
e-value: 8.5E-21
score: 75.5
NoneNo IPR availablePANTHERPTHR24206FAMILY NOT NAMEDcoord: 13..77
NoneNo IPR availableCDDcd09358LIM_Mical_likecoord: 19..71
e-value: 4.24601E-20
score: 73.4569
NoneNo IPR availableSUPERFAMILYSSF57716Glucocorticoid receptor-like (DNA-binding domain)coord: 13..44
NoneNo IPR availableSUPERFAMILYSSF57716Glucocorticoid receptor-like (DNA-binding domain)coord: 45..79