Ribosome assembly factor mrt4

Overview
NameRibosome assembly factor mrt4
Smed IDSMED30013497
Length (bp)855
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Ribosome assembly factor mrt4 (SMED30013497) t-SNE clustered cells

Violin plots show distribution of expression levels for Ribosome assembly factor mrt4 (SMED30013497) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Ribosome assembly factor mrt4 (SMED30013497) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Ribosome assembly factor mrt4 (SMED30013497) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30013497

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 10

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30013497h1SMcG0021446 SmedASXL_019105SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
Smed sexual biotypeSMED30013497h1SMcG0005135 Contig4528GPL15192PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
gutSMED30013497h1SMcG0021446 dd_Smed_v4_1609_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30013497h1SMcG0021446 dd_Smed_v4_1609_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30013497h1SMcG0021446 dd_Smed_v4_1609_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30013497h1SMcG0021446 dd_Smed_v4_1609_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30013497h1SMcG0021446 dd_Smed_v4_1609_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
posterior sideSMED30013497h1SMcG0021446 dd_Smed_v4_1609_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
posterior muscle cellSMED30013497h1SMcG0021446 dd_Smed_v4_1609_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30013497h1SMcG0021446 Contig4528GPL15192PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of Ribosome assembly factor mrt4 vs. Ensembl Human
Match: MRTO4 (MRT4 homolog, ribosome maturation factor [Source:HGNC Symbol;Acc:HGNC:18477])

HSP 1 Score: 110.538 bits (275), Expect = 1.864e-28
Identity = 66/190 (34.74%), Postives = 106/190 (55.79%), Query Frame = 1 
Query:  106 KKNFIDTVKTVLGQFSTIFVLNINNLRTNLVKRIREDFNDSXXXXXXXXXXXXXXEGNP----------LTEVLEGNDVLLFTERNYENVSEELTKYTSLEFARTGVLCQQSVKVLAQPLKVFDSGLAPTLRDLGMPVEIKDGVIILMQDYQICKKGEQLNNSMSRLLKFFNIQTAEFNVEIKAMLKDNS 645
            K+N I+ ++  +  +  +F+ ++ N+R + +K IR  +  S++ FGK K+   AL  +P          +++ L G   LLFT R  E V+E  TKYT +++AR G     +V +   PL+ F   + P LR LG+P  +K GV+ L+ DY++CK+G+ L    +R+LK F  + AEF V IK M    S
Sbjct:   23 KQNLIEELRKCVDTYKYLFIFSVANMRNSKLKDIRNAWKHSRMFFGKNKVMMVALGRSPSDEYKDNLHQVSKRLRGEVGLLFTNRTKEEVNEWFTKYTEMDYARAGNKAAFTVSLDPGPLEQFPHSMEPQLRQLGLPTALKRGVVTLLSDYEVCKEGDVLTPEQARVLKLFGYEMAEFKVTIKYMWDSQS 212
[Close]
BLAST of Ribosome assembly factor mrt4 vs. Ensembl Celegans
Match: F10E7.5 (Ribosome assembly factor mrt4 [Source:UniProtKB/TrEMBL;Acc:Q19302])

HSP 1 Score: 79.7221 bits (195), Expect = 1.395e-17
Identity = 47/183 (25.68%), Postives = 93/183 (50.82%), Query Frame = 1 
Query:  112 NFIDTVKTVLGQFSTIFVLNINNLRTNLVKRIREDFNDSXXXXXXXXXXXXXXEG-----------NPLTEVLEGNDVLLFTERNYENVSEELTKYTSLEFARTGVLCQQSVKVLAQPLKVFDSGLAPTLRDLGMPVEIKDGVIILMQDYQICKKGEQLNNSMSRLLKFFNIQTAEFNVEIKA 627
            N ++ V+  + Q+  +F+  I N+R+     IR+ + ++   F  K        G           +  + +L+G   L+FT  + + V  E ++ +  ++AR G +  ++V +   P+  F   + P LR LG+P ++  GVI L Q +++CK+GE L    +++LK F ++ ++F +  KA
Sbjct:   25 NLVNEVRASVDQYKNLFIFTIANMRSTRFIAIRQKYKENSRFFFGKNNVISIALGKQKSDEYANQLHKASAILKGQCGLMFTNMSKKEVEAEFSEASEEDYARVGDVATETVVLPEGPISQFAFSMEPQLRKLGLPTKLDKGVITLYQQFEVCKEGEPLTVEQAKILKHFEVKMSQFRLIFKA 207
[Close]
BLAST of Ribosome assembly factor mrt4 vs. Ensembl Celegans
Match: F10E7.5 (Ribosome assembly factor mrt4 [Source:UniProtKB/TrEMBL;Acc:Q19302])

HSP 1 Score: 79.7221 bits (195), Expect = 1.395e-17
Identity = 47/183 (25.68%), Postives = 93/183 (50.82%), Query Frame = 1 
Query:  112 NFIDTVKTVLGQFSTIFVLNINNLRTNLVKRIREDFNDSXXXXXXXXXXXXXXEG-----------NPLTEVLEGNDVLLFTERNYENVSEELTKYTSLEFARTGVLCQQSVKVLAQPLKVFDSGLAPTLRDLGMPVEIKDGVIILMQDYQICKKGEQLNNSMSRLLKFFNIQTAEFNVEIKA 627
            N ++ V+  + Q+  +F+  I N+R+     IR+ + ++   F  K        G           +  + +L+G   L+FT  + + V  E ++ +  ++AR G +  ++V +   P+  F   + P LR LG+P ++  GVI L Q +++CK+GE L    +++LK F ++ ++F +  KA
Sbjct:   25 NLVNEVRASVDQYKNLFIFTIANMRSTRFIAIRQKYKENSRFFFGKNNVISIALGKQKSDEYANQLHKASAILKGQCGLMFTNMSKKEVEAEFSEASEEDYARVGDVATETVVLPEGPISQFAFSMEPQLRKLGLPTKLDKGVITLYQQFEVCKEGEPLTVEQAKILKHFEVKMSQFRLIFKA 207
[Close]
BLAST of Ribosome assembly factor mrt4 vs. Ensembl Fly
Match: RpLP0-like (gene:FBgn0033485 transcript:FBtr0088425)

HSP 1 Score: 100.523 bits (249), Expect = 7.122e-25
Identity = 54/192 (28.12%), Postives = 102/192 (53.12%), Query Frame = 1 
Query:   82 VERKTKPHKKNFIDTVKTVLGQFSTIFVLNINNLRTNLVKRIREDFNDSXXXXXXXXXXXXXXEG-----------NPLTEVLEGNDVLLFTERNYENVSEELTKYTSLEFARTGVLCQQSVKVLAQPLKVFDSGLAPTLRDLGMPVEIKDGVIILMQDYQICKKGEQLNNSMSRLLKFFNIQTAEFNVEIK 624
             +RK    K+  +D ++  +G++  IFV  + N+R +L+K +R++   +      K    +   G           + L++ L G   LLFT+++ E V E    Y ++E+AR+G +  ++V + A PL+ F   + P LR LG+P +++ G++ L  DY +C++G+ L    +R+LK      A+F + +K
Sbjct:   15 TDRKGLAWKQRIVDDIRFCVGKYPNIFVFQVQNMRNSLLKDLRQELKKNSRFIFGKNRVMQIGLGRTKSEEVEPELHKLSKRLTGQVGLLFTDKSKEEVLEWAENYWAVEYARSGFVATETVTLPAGPLEDFAHSMEPHLRSLGLPTKLEKGIVTLYSDYTVCEEGKVLTPEQARILKLVGKPMAKFRLTMK 206
[Close]
BLAST of Ribosome assembly factor mrt4 vs. Ensembl Zebrafish
Match: mrto4 (MRT4 homolog, ribosome maturation factor [Source:ZFIN;Acc:ZDB-GENE-050417-142])

HSP 1 Score: 98.9821 bits (245), Expect = 2.540e-24
Identity = 60/190 (31.58%), Postives = 98/190 (51.58%), Query Frame = 1 
Query:  106 KKNFIDTVKTVLGQFSTIFVLNINNLRTNLVKRIREDFNDSXXXXXXXXXXXXXXEGNP----------LTEVLEGNDVLLFTERNYENVSEELTKYTSLEFARTGVLCQQSVKVLAQPLKVFDSGLAPTLRDLGMPVEIKDGVIILMQDYQICKKGEQLNNSMSRLLKFFNIQTAEFNVEIKAMLKDNS 645
            K+N I+ ++     +  +FV ++ N+R N +K IR  +  S+  FGK K+   AL   P          L+  L G   +LFT +  + V E    +  +++AR G     +V +   PL  F   + P LR LG+P  +K GV+ L++D+++CK+G+ L    +R+LK F  + AEF + IK M    S
Sbjct:   23 KQNLIEELRKCADIYRYVFVFSVENMRNNKLKDIRTAWKHSRFFFGKNKVMMIALGKGPTDEYKDNLHKLSRFLRGEVGVLFTNKTKDEVQEYFGNFKEVDYARAGNTASMAVTLDEGPLDQFPHSMEPQLRQLGLPTALKKGVVTLIKDFEVCKEGDTLTPEQARILKLFGFEMAEFKLSIKCMWNSES 212
[Close]
BLAST of Ribosome assembly factor mrt4 vs. Ensembl Xenopus
Match: mrto4 (MRT4 homolog, ribosome maturation factor [Source:NCBI gene;Acc:448696])

HSP 1 Score: 90.5077 bits (223), Expect = 7.540e-22
Identity = 46/117 (39.32%), Postives = 70/117 (59.83%), Query Frame = 1 
Query:  283 LTEVLEGNDVLLFTERNYENVSEELTKYTSLEFARTGVLCQQSVKVLAQPLKVFDSGLAPTLRDLGMPVEIKDGVIILMQDYQICKKGEQLNNSMSRLLKFFNIQTAEFNVEIKAML 633
            L++ L+G   LLFT R  + V E   ++  ++FAR G     +V + A PL+ F   + P LR LG+P  +K GVI L+ DY++CK+G+ L    +R+LK F+   AEF V IK++ 
Sbjct:    1 LSKCLKGEVGLLFTNRTEKEVKEWFDQFKDMDFARAGNKATYAVVLDAGPLEQFTHSMEPQLRQLGLPTALKKGVITLLSDYEVCKEGDVLTPEQARILKLFSFM-AEFKVSIKSIW 116
[Close]
BLAST of Ribosome assembly factor mrt4 vs. Ensembl Mouse
Match: Mrto4 (mRNA turnover 4, ribosome maturation factor [Source:MGI Symbol;Acc:MGI:1917152])

HSP 1 Score: 112.464 bits (280), Expect = 2.171e-29
Identity = 68/190 (35.79%), Postives = 106/190 (55.79%), Query Frame = 1 
Query:  106 KKNFIDTVKTVLGQFSTIFVLNINNLRTNLVKRIREDFNDSXXXXXXXXXXXXXXEGNP----------LTEVLEGNDVLLFTERNYENVSEELTKYTSLEFARTGVLCQQSVKVLAQPLKVFDSGLAPTLRDLGMPVEIKDGVIILMQDYQICKKGEQLNNSMSRLLKFFNIQTAEFNVEIKAMLKDNS 645
            K+N I+ ++  +  +  +F+ ++ N+R + +K IR  +  S++ FGK K+   AL  +P          +++ L G   LLFT R  E V+E  TKYT ++FAR G     +V +   PLK F   + P LR LG+P  +K GV+ L+ DY++CK+G+ L    +R+LK F  + AEF V IK M    S
Sbjct:   23 KQNLIEELRKCVDTYKYLFIFSVANMRNSKLKDIRNAWKHSRMFFGKNKVMMVALGRSPSDEYKDNLHQVSKKLRGEVGLLFTNRTKEEVNEWFTKYTEMDFARAGNKATLTVSLDPGPLKQFPHSMEPQLRQLGLPTALKKGVVTLLSDYEVCKEGDVLTPEQARILKLFGYEMAEFKVIIKYMWDAQS 212
[Close]
BLAST of Ribosome assembly factor mrt4 vs. Ensembl Mouse
Match: Mrto4 (mRNA turnover 4, ribosome maturation factor [Source:MGI Symbol;Acc:MGI:1917152])

HSP 1 Score: 106.301 bits (264), Expect = 5.309e-27
Identity = 67/190 (35.26%), Postives = 105/190 (55.26%), Query Frame = 1 
Query:  106 KKNFIDTVKTVLGQFSTIFVLNINNLRTNLVKRIREDFNDSXXXXXXXXXXXXXXEGNP----------LTEVLEGNDVLLFTERNYENVSEELTKYTSLEFARTGVLCQQSVKVLAQPLKVFDSGLAPTLRDLGMPVEIKDGVIILMQDYQICKKGEQLNNSMSRLLKFFNIQTAEFNVEIKAMLKDNS 645
            K+N I+ ++  +  +  +F+ ++ N+R + +K IR  +  S++ FGK K+   AL  +P          +++ L G   LLFT R  E V+E  TKYT ++FAR G     +V +   PLK F   + P LR LG+P  +K GV+ L+ DY++CK+G+ L    +R+L  F  + AEF V IK M    S
Sbjct:   23 KQNLIEELRKCVDTYKYLFIFSVANMRNSKLKDIRNAWKHSRMFFGKNKVMMVALGRSPSDEYKDNLHQVSKKLRGEVGLLFTNRTKEEVNEWFTKYTEMDFARAGNKATLTVSLDPGPLKQFPHSMEPQLRQLGLPTALKKGVVTLLSDYEVCKEGDVLTPEQARIL-LFGYEMAEFKVIIKYMWDAQS 211
[Close]
BLAST of Ribosome assembly factor mrt4 vs. UniProt/SwissProt
Match: sp|Q9D0I8|MRT4_MOUSE (mRNA turnover protein 4 homolog OS=Mus musculus OX=10090 GN=Mrto4 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.519e-28
Identity = 68/190 (35.79%), Postives = 106/190 (55.79%), Query Frame = 1 
Query:  106 KKNFIDTVKTVLGQFSTIFVLNINNLRTNLVKRIREDFNDSXXXXXXXXXXXXXXEGNP----------LTEVLEGNDVLLFTERNYENVSEELTKYTSLEFARTGVLCQQSVKVLAQPLKVFDSGLAPTLRDLGMPVEIKDGVIILMQDYQICKKGEQLNNSMSRLLKFFNIQTAEFNVEIKAMLKDNS 645
            K+N I+ ++  +  +  +F+ ++ N+R + +K IR  +  S++ FGK K+   AL  +P          +++ L G   LLFT R  E V+E  TKYT ++FAR G     +V +   PLK F   + P LR LG+P  +K GV+ L+ DY++CK+G+ L    +R+LK F  + AEF V IK M    S
Sbjct:   23 KQNLIEELRKCVDTYKYLFIFSVANMRNSKLKDIRNAWKHSRMFFGKNKVMMVALGRSPSDEYKDNLHQVSKKLRGEVGLLFTNRTKEEVNEWFTKYTEMDFARAGNKATLTVSLDPGPLKQFPHSMEPQLRQLGLPTALKKGVVTLLSDYEVCKEGDVLTPEQARILKLFGYEMAEFKVIIKYMWDAQS 212
[Close]
BLAST of Ribosome assembly factor mrt4 vs. UniProt/SwissProt
Match: sp|Q9UKD2|MRT4_HUMAN (mRNA turnover protein 4 homolog OS=Homo sapiens OX=9606 GN=MRTO4 PE=1 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 8.953e-28
Identity = 66/190 (34.74%), Postives = 106/190 (55.79%), Query Frame = 1 
Query:  106 KKNFIDTVKTVLGQFSTIFVLNINNLRTNLVKRIREDFNDSXXXXXXXXXXXXXXEGNP----------LTEVLEGNDVLLFTERNYENVSEELTKYTSLEFARTGVLCQQSVKVLAQPLKVFDSGLAPTLRDLGMPVEIKDGVIILMQDYQICKKGEQLNNSMSRLLKFFNIQTAEFNVEIKAMLKDNS 645
            K+N I+ ++  +  +  +F+ ++ N+R + +K IR  +  S++ FGK K+   AL  +P          +++ L G   LLFT R  E V+E  TKYT +++AR G     +V +   PL+ F   + P LR LG+P  +K GV+ L+ DY++CK+G+ L    +R+LK F  + AEF V IK M    S
Sbjct:   23 KQNLIEELRKCVDTYKYLFIFSVANMRNSKLKDIRNAWKHSRMFFGKNKVMMVALGRSPSDEYKDNLHQVSKRLRGEVGLLFTNRTKEEVNEWFTKYTEMDYARAGNKAAFTVSLDPGPLEQFPHSMEPQLRQLGLPTALKRGVVTLLSDYEVCKEGDVLTPEQARVLKLFGYEMAEFKVTIKYMWDSQS 212
[Close]
BLAST of Ribosome assembly factor mrt4 vs. UniProt/SwissProt
Match: sp|A4FV84|MRT4_BOVIN (mRNA turnover protein 4 homolog OS=Bos taurus OX=9913 GN=MRTO4 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.420e-27
Identity = 66/190 (34.74%), Postives = 105/190 (55.26%), Query Frame = 1 
Query:  106 KKNFIDTVKTVLGQFSTIFVLNINNLRTNLVKRIREDFNDSXXXXXXXXXXXXXXEGNP----------LTEVLEGNDVLLFTERNYENVSEELTKYTSLEFARTGVLCQQSVKVLAQPLKVFDSGLAPTLRDLGMPVEIKDGVIILMQDYQICKKGEQLNNSMSRLLKFFNIQTAEFNVEIKAMLKDNS 645
            K+N I+ ++  +  +  +F+ ++ N+R + +K IR  +  S++ FGK K+   AL  +P          +++ L G   LLFT R  E V E  TKYT +++AR G     +V +   PL+ F   + P LR LG+P  +K GV+ L+ DY++CK+G+ L    +R+LK F  + AEF V IK M    S
Sbjct:   23 KQNLIEELRKCVDTYKYLFIFSVANMRNSKLKDIRNAWKHSRMFFGKNKVMMVALGRSPSDEYKDNLHQVSKKLRGEVGLLFTNRTKEEVDEWFTKYTEMDYARAGNKATFTVNLDPGPLEQFPHSMEPQLRQLGLPTALKKGVVTLLSDYEVCKEGDVLTPEQARVLKLFGYEMAEFKVSIKYMWDAQS 212
[Close]
BLAST of Ribosome assembly factor mrt4 vs. UniProt/SwissProt
Match: sp|Q86HD3|MRT4_DICDI (Ribosome assembly factor mrt4 OS=Dictyostelium discoideum OX=44689 GN=mrt4 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.151e-23
Identity = 58/198 (29.29%), Postives = 99/198 (50.00%), Query Frame = 1 
Query:  106 KKNFIDTVKTVLGQFSTIFVLNINNLRTNLVKRIREDFNDSX------XXXXXXXXXXXXXEGNP----LTEVLEGNDVLLFTERNYENVSEELTKYTSLEFARTGVLCQQSVKVLAQPLKVFDSGLAPTLRDLGMPVEIKDGVIILMQDYQICKKGEQLNNSMSRLLKFFNIQTAEFNVEIKAMLKDNSLTNCEINS 669
            KK  + T+K ++ Q+  I++    N+R N +K +R +++ SK       +        +  E  P    LTE LEG   L FT    + V E  T Y+  +F R+G + ++++ +   P+      +   LR LG+P  +K+GVI + ++Y +C+ G  +    S+LLK FN + +EF   IK    ++  T CE  S
Sbjct:   23 KKKLVSTIKDIVDQYKFIYLFTFENMRNNKLKSVRTEWSTSKFLFGKNKVLSVGLGKSEEDELKPNLHKLTEHLEGECGLFFTNEPKDKVFEYFTNYSEKDFPRSGFVSEETITIKEGPIVGMTHSMETYLRGLGLPTTLKNGVIFVDREYTLCEAGVAVTPEQSQLLKLFNHEISEFKFHIKGFWNEDEFTLCEEES 220
[Close]
BLAST of Ribosome assembly factor mrt4 vs. UniProt/SwissProt
Match: sp|Q9USZ6|MRT4_SCHPO (Ribosome assembly factor mrt4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=mrt4 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 7.849e-21
Identity = 63/201 (31.34%), Postives = 99/201 (49.25%), Query Frame = 1 
Query:   85 ERKTKPHKKNFIDTVKTVLGQFSTIFVLNINNLRTNLVKRIREDFNDSXXXXXXXXXXXXXXEGNP----------LTEVLEGNDVLLFTERNYENVSEELTKYTSLEFARTGVLCQQSVKVLAQPLK------------VFDSGLAPTLRDLGMPVEIKDGVIILMQDYQICKKGEQLNNSMSRLLKFFNIQTAEFNVEI 621
            E+K    K      V+  L  F  +++ ++ N+R   +KRIR+D+  S+I  GK K+  KAL   P          LT++L G   LLFT    + V      +   +FAR G +   +  + A P+             +    L P +R LGMP  +K+GV+ L+ D+ +C +G+QL++  +RLLK F I  AEF V +
Sbjct:   16 EKKGHEGKAALFSGVQQSLDSFDYMWIFDVTNMRNTYLKRIRDDWKGSRIFMGKTKVMAKALGHTPEEEHAENVSKLTKLLHGAVGLLFTNSKPDEVIGYFESFVQNDFARAGAVAPFTHVIPAGPVYSRAGQIPVEDDILLTHTLEPQVRQLGMPTVLKNGVVTLLADFPLCTEGQQLDSRQTRLLKLFGITAAEFKVGL 216
[Close]
BLAST of Ribosome assembly factor mrt4 vs. TrEMBL
Match: A0A419PIK2 (Ribosome assembly factor mrt4 (Fragment) OS=Clonorchis sinensis OX=79923 GN=Mrto4 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 9.704e-29
Identity = 72/241 (29.88%), Postives = 120/241 (49.79%), Query Frame = 1 
Query:   91 KTKPHKKNFIDTVKTVLGQFSTIFVLNINNLRTNLVKRIREDFND----------SXXXXXXXXXXXXXXEGNPLTEVLEGNDVLLFTERNYENVSEELTKYTSLEFARTGVLCQQSVKVLAQPLKVFDSGLAPTLRDLGMPVEIKDGVIILMQDYQICKKGEQLNNSMSRLLKFFNIQTAEFNVEIKAML--KDNSLTNCEINSGKSIENLPASVEVRCELLDDGKYYFMSHAIEEAAMD 777
            K+   K+  I+ ++  +  ++  +V+  NN R   +  +R D  D          + +   K+         + L++ ++G   LL T  +   + E+     S EFAR GV   Q+V + A P   F   L P LR LG+PV++  GV+IL +DY  CK+ ++L     R+LK F +Q +EF V I A    ++  L   + +S + I +L  +V V C+ LDDG+YYF+  A+ +   D
Sbjct:    7 KSASKKREHIEKIRRYVDSYNRAYVITFNNPRNQKISELRHDLKDGQIIFGKNKVTILALRKRLGKALRPHLDALSKFIKGQCALLLTNLSVRELREKFDALRSSEFARPGVPAPQTVTLAAGPCHKFTHTLEPYLRQLGLPVKLVRGVVILEEDYIACKRDQELTPEQCRVLKLFELQLSEFRVAIIASWSEEEGVLEVSDSDSRQMITSLAPAVRVTCQKLDDGQYYFIPEAVPDEPED 247
[Close]
BLAST of Ribosome assembly factor mrt4 vs. TrEMBL
Match: A0A5K4FB50 (Uncharacterized protein OS=Schistosoma mansoni OX=6183 PE=4 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.524e-27
Identity = 72/237 (30.38%), Postives = 119/237 (50.21%), Query Frame = 1 
Query:   91 KTKPHKKNFIDTVKTVLGQFSTIFVLNINNLRTNLVKRIREDFND----------SXXXXXXXXXXXXXXEGNPLTEVLEGNDVLLFTERNYENVSEELTKYTSLEFARTGVLCQQSVKVLAQPLKVFDSGLAPTLRDLGMPVEIKDGVIILMQDYQICKKGEQLNNSMSRLLKFFNIQTAEFNVEIKAMLKDNSLTN--CEINSGKSIENLPASVEVRCELLDDGKYYFMSHAIEE 765
            K  P KK  I  V+  + ++  ++V+ + N RT  V  IR+              + +  GK        + + L++ L+G   LLF+  +   + E+L  + S E++R GV+ +Q+V + + PL  F   + P LR LGMPV++  GV+ L ++Y +C +G  L+    R+LK F I+ +EF V + A+  D        E +S     +L   V V C+ LDDG YYF+    E+
Sbjct:   17 KHAPKKKEHIAKVRQYVDEYRRVYVVTLQNPRTQKVSEIRKSMAKIKLLFGVNKVTTLALGKTHEDSYRPKLHLLSKYLKGQCALLFSRSSPAELREQLDAFRSSEYSRPGVIAEQTVWIASGPLPKFSHSMEPVLRQLGMPVKLVKGVVHLEREYLVCSRGNVLSPEQCRILKLFQIEISEFRVSLLAVWIDGEGVEELAEKDSCMMRTSLHPEVLVVCKQLDDGLYYFIPQPYEK 253
[Close]
BLAST of Ribosome assembly factor mrt4 vs. TrEMBL
Match: C1LJE9 (Ribosome assembly factor mrt4 OS=Schistosoma japonicum OX=6182 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 2.271e-27
Identity = 73/238 (30.67%), Postives = 119/238 (50.00%), Query Frame = 1 
Query:   88 RKTKPHKKNFIDTVKTVLGQFSTIFVLNINNLRTNLVKRIREDFND----------SXXXXXXXXXXXXXXEGNPLTEVLEGNDVLLFTERNYENVSEELTKYTSLEFARTGVLCQQSVKVLAQPLKVFDSGLAPTLRDLGMPVEIKDGVIILMQDYQICKKGEQLNNSMSRLLKFFNIQTAEFNVEIKAMLKDNSLTNCEINSGKSI---ENLPASVEVRCELLDDGKYYFMSHAIE 762
            +K  P KK  +  V+  L ++  ++V+ ++N RT  V  IR++  D          + +  GK        + + L + L+G   LLFT+ +   + E+L  + S E+ R G   +Q+V++ + PL  F   + P LR LGMPV++  GV+ L +DY +C   + L+    R+LK F I+ +EF V + A+  D      E+    S     +L   V V C+ LDDG YYF+    E
Sbjct:   16 QKHAPKKKQHVAKVRQYLDEYKRVYVVTLHNPRTQKVSEIRKNMPDIKLLFGINKVTVLALGKTHKDSYRPKLHHLCKYLKGQCALLFTKSSPSKLREQLDAFRSAEYCRPGAPAEQTVRIASGPLPKFPHTMEPVLRQLGMPVKLVRGVVHLERDYLVCNSEDVLSPEQCRILKLFQIEMSEFRVGLLAVWTDGDGVE-ELEEKDSCLMRTSLHPEVIVVCKQLDDGLYYFIPQPCE 252
[Close]
BLAST of Ribosome assembly factor mrt4 vs. TrEMBL
Match: C1LJF0 (Ribosome assembly factor mrt4 OS=Schistosoma japonicum OX=6182 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 2.320e-27
Identity = 73/238 (30.67%), Postives = 119/238 (50.00%), Query Frame = 1 
Query:   88 RKTKPHKKNFIDTVKTVLGQFSTIFVLNINNLRTNLVKRIREDFND----------SXXXXXXXXXXXXXXEGNPLTEVLEGNDVLLFTERNYENVSEELTKYTSLEFARTGVLCQQSVKVLAQPLKVFDSGLAPTLRDLGMPVEIKDGVIILMQDYQICKKGEQLNNSMSRLLKFFNIQTAEFNVEIKAMLKDNSLTNCEINSGKSI---ENLPASVEVRCELLDDGKYYFMSHAIE 762
            +K  P KK  +  V+  L ++  ++V+ ++N RT  V  IR++  D          + +  GK        + + L + L+G   LLFT+ +   + E+L  + S E+ R G   +Q+V++ + PL  F   + P LR LGMPV++  GV+ L +DY +C   + L+    R+LK F I+ +EF V + A+  D      E+    S     +L   V V C+ LDDG YYF+    E
Sbjct:   16 QKHAPKKKQHVAKVRQYLDEYKRVYVVTLHNPRTQKVSEIRKNMPDIKLLFGINKVTVLALGKTHKDSYRPKLHHLCKYLKGQCALLFTKSSPSELREQLDAFRSAEYCRPGAPAEQTVRIASGPLPKFPHTMEPVLRQLGMPVKLVRGVVHLERDYLVCNSEDVLSPEQCRILKLFQIEMSEFRVGLLAVWTDGDGVE-ELEEKDSCLMRTSLHPEVIVVCKQLDDGLYYFIPQPCE 252
[Close]
BLAST of Ribosome assembly factor mrt4 vs. TrEMBL
Match: C1LJF1 (Ribosome assembly factor mrt4 OS=Schistosoma japonicum OX=6182 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 2.394e-27
Identity = 73/238 (30.67%), Postives = 119/238 (50.00%), Query Frame = 1 
Query:   88 RKTKPHKKNFIDTVKTVLGQFSTIFVLNINNLRTNLVKRIREDFND----------SXXXXXXXXXXXXXXEGNPLTEVLEGNDVLLFTERNYENVSEELTKYTSLEFARTGVLCQQSVKVLAQPLKVFDSGLAPTLRDLGMPVEIKDGVIILMQDYQICKKGEQLNNSMSRLLKFFNIQTAEFNVEIKAMLKDNSLTNCEINSGKSI---ENLPASVEVRCELLDDGKYYFMSHAIE 762
            +K  P KK  +  V+  L ++  ++V+ ++N RT  V  IR++  D          + +  GK        + + L + L+G   LLFT+ +   + E+L  + S E+ R G   +Q+V++ + PL  F   + P LR LGMPV++  GV+ L +DY +C   + L+    R+LK F I+ +EF V + A+  D      E+    S     +L   V V C+ LDDG YYF+    E
Sbjct:   16 QKHAPKKKQHVAKVRQYLDEYKRVYVVTLHNPRTQKVSEIRKNMPDIKLLFGINKVTVLALGKTHKDSYRPKLHHLCKYLKGQCALLFTKSSPSELREQLDAFRSAEYCRPGAPAEQTVRIASGPLPKFPHTMEPVLRQLGMPVKLVRGVVHLERDYLVCNSEDVLSPEQCRILKLFQIEMSEFRVGLLAVWTDGDGVE-ELEEKDSCLMRTSLHPEVIVVCKQLDDGLYYFIPQPCE 252
[Close]
BLAST of Ribosome assembly factor mrt4 vs. Ensembl Cavefish
Match: mrto4 (MRT4 homolog, ribosome maturation factor [Source:NCBI gene;Acc:103032884])

HSP 1 Score: 107.071 bits (266), Expect = 1.929e-27
Identity = 61/190 (32.11%), Postives = 104/190 (54.74%), Query Frame = 1 
Query:  106 KKNFIDTVKTVLGQFSTIFVLNINNLRTNLVKRIREDFNDSXXXXXXXXXXXXXXEGNP----------LTEVLEGNDVLLFTERNYENVSEELTKYTSLEFARTGVLCQQSVKVLAQPLKVFDSGLAPTLRDLGMPVEIKDGVIILMQDYQICKKGEQLNNSMSRLLKFFNIQTAEFNVEIKAMLKDNS 645
            K+N I+ ++  +  +  +F+ ++ N+R N +K IR  +  S+  FGK K+   AL   P          +++ L G   +LFT +  E V E    +  +++AR+G + Q +V +   PL+ F   + P LR LG+P  +K GV+ L++DY++CK+G+ L    +R+LK F  + AEF + IK M    S
Sbjct:   23 KQNLIEELRKCVDTYRYVFIFSVENMRNNKLKDIRAAWKHSRFFFGKNKVMMIALGKGPTDEYKDNLHRVSKFLRGEVGVLFTNKTKEEVQEYFNSFKEVDYARSGNVAQMAVTLDEGPLEQFTHSMEPQLRQLGLPTALKKGVVTLIKDYEVCKEGDTLTPEQARILKLFGFEMAEFKLSIKCMWNSES 212
[Close]
BLAST of Ribosome assembly factor mrt4 vs. Ensembl Cavefish
Match: mrto4 (MRT4 homolog, ribosome maturation factor [Source:NCBI gene;Acc:103032884])

HSP 1 Score: 107.071 bits (266), Expect = 2.371e-27
Identity = 61/190 (32.11%), Postives = 104/190 (54.74%), Query Frame = 1 
Query:  106 KKNFIDTVKTVLGQFSTIFVLNINNLRTNLVKRIREDFNDSXXXXXXXXXXXXXXEGNP----------LTEVLEGNDVLLFTERNYENVSEELTKYTSLEFARTGVLCQQSVKVLAQPLKVFDSGLAPTLRDLGMPVEIKDGVIILMQDYQICKKGEQLNNSMSRLLKFFNIQTAEFNVEIKAMLKDNS 645
            K+N I+ ++  +  +  +F+ ++ N+R N +K IR  +  S+  FGK K+   AL   P          +++ L G   +LFT +  E V E    +  +++AR+G + Q +V +   PL+ F   + P LR LG+P  +K GV+ L++DY++CK+G+ L    +R+LK F  + AEF + IK M    S
Sbjct:   29 KQNLIEELRKCVDTYRYVFIFSVENMRNNKLKDIRAAWKHSRFFFGKNKVMMIALGKGPTDEYKDNLHRVSKFLRGEVGVLFTNKTKEEVQEYFNSFKEVDYARSGNVAQMAVTLDEGPLEQFTHSMEPQLRQLGLPTALKKGVVTLIKDYEVCKEGDTLTPEQARILKLFGFEMAEFKLSIKCMWNSES 218
[Close]
BLAST of Ribosome assembly factor mrt4 vs. Ensembl Yeast
Match: MRT4 (Protein involved in mRNA turnover and ribosome assembly; required at post-transcriptional step for efficient retrotransposition; localizes to the nucleolus [Source:SGD;Acc:S000001492])

HSP 1 Score: 64.6994 bits (156), Expect = 8.970e-13
Identity = 55/212 (25.94%), Postives = 107/212 (50.47%), Query Frame = 1 
Query:   85 ERKTKPHKKNFIDTVKTVLGQFSTIFVLNINNLRTNLVKRIREDFNDSXXXXXXXXXXXXXXEGN----------PLTEVLEGNDVLLFTERNYENVSEELTKYTSLEFART------------GVLCQQSVKVLAQPLKVFDSGLAPTLRD-LGMPVEIKDGVIILMQDYQICKKGEQLNNSMSRLLKFFNIQTAEFNVEIKAMLKDNSLT 651
            ++K + +K+   D V+  L  +  ++VL+++++RT +++ IR  +  SK++ GK+K+  KAL              L+++  G   LLFT+ +   V E    Y   +++R             G++  +  ++ A+        L PT+R+   +P +IK G I +   Y +C +GE+L+   + +LK F I  +EF V++ A   ++S T
Sbjct:   16 DKKGRENKERIFDEVREALDTYRYVWVLHLDDVRTPVLQEIRTSWAGSKLIMGKRKVLQKALGEKREEEYKENLYQLSKLCSGVTGLLFTDEDVNTVKEYFKSYVRSDYSRPNTKAPLTFTIPEGIVYSRGGQIPAEEDVPMIHSLEPTMRNKFEIPTKIKAGKITIDSPYLVCTEGEKLDVRQALILKQFGIAASEFKVKVSAYYDNDSST 227
[Close]
BLAST of Ribosome assembly factor mrt4 vs. Ensembl Nematostella
Match: EDO30123 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7T1P1])

HSP 1 Score: 89.3521 bits (220), Expect = 2.182e-21
Identity = 57/182 (31.32%), Postives = 98/182 (53.85%), Query Frame = 1 
Query:  106 KKNFIDTVKTVLGQFSTIFVLNINNLRTNLVKRIREDFNDSXXXXXXXXXXXXXXEGNP-------LTEV---LEGNDVLLFTERNYENVSEELTKYTSLEFARTGVLCQQSVKVLAQPLKVFDSGLAPTLRDLGMPVEIKDGVIILMQDYQICKKGEQLNNSMSRLLKFFNIQTAEFNVEI 621
            K   +  V+  + +++ ++V ++ N+R + +K  RE +  S+  FGK K+   AL   P       L EV   L+G   LLFT ++ ++V+    +Y+ ++FAR G       ++ A PL  F     P LR LG+P  +K GV+ L+ D+ +CK+G+ L    +R+LK F    AEF++ +
Sbjct:   23 KSGLVKEVQECVDEYAFVYVFSVENMRNSKLKDAREKWKQSRFFFGKNKVMAIALGKTPEDEYKENLCEVSKRLKGQCGLLFTNQSKDDVTSWFKEYSEMDFARAGNKAICDFQLDAGPLDQFPHSTEPNLRQLGLPTALKKGVVTLLSDHTVCKEGDVLTPEQARILKLFGNPMAEFHITL 204
[Close]
BLAST of Ribosome assembly factor mrt4 vs. Ensembl Medaka
Match: mrto4 (MRT4 homolog, ribosome maturation factor [Source:NCBI gene;Acc:101175392])

HSP 1 Score: 104.76 bits (260), Expect = 1.407e-26
Identity = 57/186 (30.65%), Postives = 100/186 (53.76%), Query Frame = 1 
Query:  106 KKNFIDTVKTVLGQFSTIFVLNINNLRTNLVKRIREDFNDSXXX-XXXXXXXXXXXEGNP---------LTEVLEGNDVLLFTERNYENVSEELTKYTSLEFARTGVLCQQSVKVLAQPLKVFDSGLAPTLRDLGMPVEIKDGVIILMQDYQICKKGEQLNNSMSRLLKFFNIQTAEFNVEIKAML 633
            K+  I+ ++  +  +  +F+ ++ N+R N +K IR  +  S+      K +     +G+P         +++ L G   +LFT +  + V E  + +  ++FAR G   Q  V +   PL+ F   + P LR LG+P  +K GV+ L++DY++CK+G+ L    +R+LK F I+ AEF V+IK M 
Sbjct:   23 KQKLIEELRKCVDTYRNLFIFSVENMRNNKLKDIRTAWKHSRFFFGKNKVMIVALGKGSPDEYKDNLHKVSKFLRGEVGVLFTNKTKDEVYEYFSHFKEMDFARAGNQAQMDVTLDEGPLEQFPHSMEPQLRQLGLPTALKKGVVTLLKDYEVCKEGDILTPEQARILKLFAIEMAEFKVKIKCMW 208
[Close]
BLAST of Ribosome assembly factor mrt4 vs. Planmine SMEST
Match: SMESG000020510.1 (SMESG000020510.1)

HSP 1 Score: 437.187 bits (1123), Expect = 1.044e-156
Identity = 231/234 (98.72%), Postives = 231/234 (98.72%), Query Frame = 1 
Query:   82 VERKTKPHKKNFIDTVKTVLGQFSTIFVLNINNLRTNLVKRIREDFNDSXXXXXXXXXXXXXXEGNPLTEVLEGNDVLLFTERNYENVSEELTKYTSLEFARTGVLCQQSVKVLAQPLKVFDSGLAPTLRDLGMPVEIKDGVIILMQDYQICKKGEQLNNSMSRLLKFFNIQTAEFNVEIKAMLKDNSLTNCEINSGKSIENLPASVEVRCELLDDGKYYFMSHAIEEAAMDCE 783
            VERKTKPHKKNFIDTVKTVLGQFSTIFVLNINNLRTNLVKRIREDFNDSKILFGKKKLFFKALEGN LTEVLEGNDVLLFTERNYENVSEEL KYTSLEFARTGVLCQQSVKVLAQPLKVFDSGLAPTLRDLGMPVEIKDGVIILMQDYQICKKGEQLNNSMSRLLKFFNIQTAEFNVEIKAMLKDNSLTN EINSGKSIENLPASVEVRCELLDDGKYYFMSHAIEEAAMDCE
Sbjct:   18 VERKTKPHKKNFIDTVKTVLGQFSTIFVLNINNLRTNLVKRIREDFNDSKILFGKKKLFFKALEGNHLTEVLEGNDVLLFTERNYENVSEELAKYTSLEFARTGVLCQQSVKVLAQPLKVFDSGLAPTLRDLGMPVEIKDGVIILMQDYQICKKGEQLNNSMSRLLKFFNIQTAEFNVEIKAMLKDNSLTNYEINSGKSIENLPASVEVRCELLDDGKYYFMSHAIEEAAMDCE 251
The following BLAST results are available for this feature:
BLAST of Ribosome assembly factor mrt4 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 1
Match NameE-valueIdentityDescription
MRTO41.864e-2834.74MRT4 homolog, ribosome maturation factor [Source:H... [more]
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BLAST of Ribosome assembly factor mrt4 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 2
Match NameE-valueIdentityDescription
F10E7.51.395e-1725.68Ribosome assembly factor mrt4 [Source:UniProtKB/T... [more]
F10E7.51.395e-1725.68Ribosome assembly factor mrt4 [Source:UniProtKB/T... [more]
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BLAST of Ribosome assembly factor mrt4 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 1
Match NameE-valueIdentityDescription
RpLP0-like7.122e-2528.13gene:FBgn0033485 transcript:FBtr0088425[more]
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BLAST of Ribosome assembly factor mrt4 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 1
Match NameE-valueIdentityDescription
mrto42.540e-2431.58MRT4 homolog, ribosome maturation factor [Source:Z... [more]
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BLAST of Ribosome assembly factor mrt4 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 1
Match NameE-valueIdentityDescription
mrto47.540e-2239.32MRT4 homolog, ribosome maturation factor [Source:N... [more]
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BLAST of Ribosome assembly factor mrt4 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 2
Match NameE-valueIdentityDescription
Mrto42.171e-2935.79mRNA turnover 4, ribosome maturation factor [Sourc... [more]
Mrto45.309e-2735.26mRNA turnover 4, ribosome maturation factor [Sourc... [more]
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BLAST of Ribosome assembly factor mrt4 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|Q9D0I8|MRT4_MOUSE1.519e-2835.79mRNA turnover protein 4 homolog OS=Mus musculus OX... [more]
sp|Q9UKD2|MRT4_HUMAN8.953e-2834.74mRNA turnover protein 4 homolog OS=Homo sapiens OX... [more]
sp|A4FV84|MRT4_BOVIN1.420e-2734.74mRNA turnover protein 4 homolog OS=Bos taurus OX=9... [more]
sp|Q86HD3|MRT4_DICDI3.151e-2329.29Ribosome assembly factor mrt4 OS=Dictyostelium dis... [more]
sp|Q9USZ6|MRT4_SCHPO7.849e-2131.34Ribosome assembly factor mrt4 OS=Schizosaccharomyc... [more]
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BLAST of Ribosome assembly factor mrt4 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A419PIK29.704e-2929.88Ribosome assembly factor mrt4 (Fragment) OS=Clonor... [more]
A0A5K4FB501.524e-2730.38Uncharacterized protein OS=Schistosoma mansoni OX=... [more]
C1LJE92.271e-2730.67Ribosome assembly factor mrt4 OS=Schistosoma japon... [more]
C1LJF02.320e-2730.67Ribosome assembly factor mrt4 OS=Schistosoma japon... [more]
C1LJF12.394e-2730.67Ribosome assembly factor mrt4 OS=Schistosoma japon... [more]
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BLAST of Ribosome assembly factor mrt4 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 2
Match NameE-valueIdentityDescription
mrto41.929e-2732.11MRT4 homolog, ribosome maturation factor [Source:N... [more]
mrto42.371e-2732.11MRT4 homolog, ribosome maturation factor [Source:N... [more]
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BLAST of Ribosome assembly factor mrt4 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Ribosome assembly factor mrt4 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 1
Match NameE-valueIdentityDescription
MRT48.970e-1325.94Protein involved in mRNA turnover and ribosome ass... [more]
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BLAST of Ribosome assembly factor mrt4 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 1
Match NameE-valueIdentityDescription
EDO301232.182e-2131.32Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of Ribosome assembly factor mrt4 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 1
Match NameE-valueIdentityDescription
mrto41.407e-2630.65MRT4 homolog, ribosome maturation factor [Source:N... [more]
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BLAST of Ribosome assembly factor mrt4 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 1
Match NameE-valueIdentityDescription
SMESG000020510.11.044e-15698.72SMESG000020510.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30013497 ID=SMED30013497|Name=Ribosome assembly factor mrt4|organism=Schmidtea mediterranea sexual|type=transcript|length=855bp
AAAAACTAGGCGTGATAATTTCTATTTAAAATGGTGAAATCTAAAAAAAT
CTCAAAAACTAAAAAACAGGTCAATACTAAAGTTGAAAGAAAAACCAAGC
CACATAAGAAAAATTTTATTGATACAGTTAAAACTGTTCTTGGTCAATTC
AGTACTATTTTTGTATTAAATATAAATAATTTAAGAACAAATCTTGTCAA
AAGGATTCGTGAGGATTTTAATGATTCTAAAATATTATTTGGTAAAAAGA
AATTATTTTTTAAAGCCCTTGAAGGAAATCCTTTAACTGAGGTGTTGGAA
GGCAATGATGTTCTACTGTTCACCGAAAGAAATTATGAAAACGTCAGTGA
AGAATTAACCAAATATACATCTCTTGAATTCGCACGCACTGGTGTATTAT
GTCAACAGTCCGTTAAAGTTCTTGCTCAACCATTGAAGGTTTTTGATTCT
GGATTGGCTCCTACTCTTCGTGATTTGGGAATGCCAGTTGAAATAAAAGA
TGGTGTAATTATATTAATGCAAGATTATCAAATTTGCAAAAAAGGAGAAC
AATTAAACAATTCAATGTCGAGATTGTTGAAATTCTTCAATATACAAACA
GCTGAATTCAATGTCGAAATCAAGGCAATGTTGAAAGATAATTCCTTGAC
GAATTGTGAAATAAACAGTGGCAAATCGATTGAAAACTTACCAGCTAGTG
TTGAAGTTCGATGTGAATTATTAGATGATGGGAAATATTATTTCATGTCT
CATGCGATTGAGGAGGCTGCGATGGATTGTGAATAAAATTTATCAGTGAA
TCTTTTGATTAGTTTAGTGTTACGATATTTTTATTGTTAATTAATATGTA
TCCCG
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protein sequence of SMED30013497-orf-1

>SMED30013497-orf-1 ID=SMED30013497-orf-1|Name=SMED30013497-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=252bp
MVKSKKISKTKKQVNTKVERKTKPHKKNFIDTVKTVLGQFSTIFVLNINN
LRTNLVKRIREDFNDSKILFGKKKLFFKALEGNPLTEVLEGNDVLLFTER
NYENVSEELTKYTSLEFARTGVLCQQSVKVLAQPLKVFDSGLAPTLRDLG
MPVEIKDGVIILMQDYQICKKGEQLNNSMSRLLKFFNIQTAEFNVEIKAM
LKDNSLTNCEINSGKSIENLPASVEVRCELLDDGKYYFMSHAIEEAAMDC
E*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000026gut
PLANA:0000101muscle cell
PLANA:0000142posterior region of the whole animal
PLANA:0000429neoblast
PLANA:0002056medial muscle cell
PLANA:0002109X1 cell
Vocabulary: INTERPRO
TermDefinition
IPR043164RL10_insert_sf
IPR040637RL10P_insert
IPR043141Ribosomal_L10-like_sf
IPR001790Ribosomal_L10P
Vocabulary: biological process
TermDefinition
GO:0042254ribosome biogenesis
GO:0000027ribosomal large subunit assembly
GO:0000956nuclear-transcribed mRNA catabolic process
GO:0006364rRNA processing
Vocabulary: cellular component
TermDefinition
GO:0005622intracellular
GO:0005634nucleus
GO:0005730nucleolus
GO:0005737cytoplasm
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR04316450S ribosomal protein L10, insertion domain superfamilyGENE3DG3DSA:3.90.105.20coord: 117..195
e-value: 4.4E-39
score: 135.9
IPR04063760S ribosomal protein L10P, insertion domainPFAMPF17777RL10P_insertcoord: 118..188
e-value: 5.4E-16
score: 58.3
IPR001790Ribosomal protein L10PPFAMPF00466Ribosomal_L10coord: 21..112
e-value: 1.7E-11
score: 44.1
IPR043141Ribosomal protein L10-like domain superfamilyGENE3DG3DSA:3.30.70.1730coord: 33..203
e-value: 4.4E-39
score: 135.9
IPR043141Ribosomal protein L10-like domain superfamilySUPERFAMILYSSF160369Ribosomal protein L10-likecoord: 21..130
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21
NoneNo IPR availablePANTHERPTHR45841:SF1MRNA TURNOVER PROTEIN 4 HOMOLOGcoord: 8..210
NoneNo IPR availablePANTHERPTHR45841FAMILY NOT NAMEDcoord: 8..210