RRM domain-containing protein

Overview


Name	RRM domain-containing protein
Smed ID	SMED30013451
Length (bp)	1521

Neoblast Clusters

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.

Expression of RRM domain-containing protein (SMED30013451) t-SNE clustered cells

Violin plots show distribution of expression levels for RRM domain-containing protein (SMED30013451) in cells (dots) of each of the 12 neoblast clusters.

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of RRM domain-containing protein (SMED30013451) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for RRM domain-containing protein (SMED30013451) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30013451

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 10

Expressed In	Reference Transcript	Gene Models	Published Transcript	Transcriptome	Publication
X1 cell	SMED30013451	h1SMcG0010710	SmedASXL_012588	SmedAsxl_ww_GCZZ01	PMID:26114597 Zhu et al., 2015
X2 cell	SMED30013451	h1SMcG0010710	SmedASXL_012588	SmedAsxl_ww_GCZZ01	PMID:26114597 Zhu et al., 2015
Smed sexual biotype	SMED30013451	h1SMcG0010710	Contig39369	newmark_ests	PMID:29674431 Fincher et al., 2018
Smed sexual biotype	SMED30013451	h1SMcG0010710	Contig39369	uc_Smed_v2	PMID:29674431 Fincher et al., 2018
nervous system	SMED30013451	h1SMcG0010710	dd_Smed_v4_1631_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
gut	SMED30013451	h1SMcG0010710	dd_Smed_v4_1631_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
epidermis	SMED30013451	h1SMcG0010710	dd_Smed_v4_1631_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
muscle cell	SMED30013451	h1SMcG0010710	dd_Smed_v4_1631_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
neoblast	SMED30013451	h1SMcG0010710	dd_Smed_v4_1631_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
parenchymal cell	SMED30013451	h1SMcG0010710	dd_Smed_v4_1631_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018

Note: Hover over icons to view figure legend

Homology

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BLAST of RRM domain-containing protein vs. Ensembl Human
Match: SRSF3 (serine and arginine rich splicing factor 3 [Source:HGNC Symbol;Acc:HGNC:10785])

HSP 1 Score: 62.3882 bits (150), Expect = 2.722e-11
Identity = 27/69 (39.13%), Postives = 44/69 (63.77%), Query Frame = 3

Query:   66 RIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVE 272
            ++++G L     K ++ER F  +G +  VWVAR+PPGF+F+ F+   DA  AV +++ R   G R++VE
Sbjct:   11 KVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVE 79

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Human
Match: SRSF3 (serine and arginine rich splicing factor 3 [Source:HGNC Symbol;Acc:HGNC:10785])

HSP 1 Score: 63.1586 bits (152), Expect = 3.894e-11
Identity = 27/69 (39.13%), Postives = 44/69 (63.77%), Query Frame = 3

Query:   66 RIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVE 272
            ++++G L     K ++ER F  +G +  VWVAR+PPGF+F+ F+   DA  AV +++ R   G R++VE
Sbjct:   11 KVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVE 79

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Human
Match: SRSF3 (serine and arginine rich splicing factor 3 [Source:HGNC Symbol;Acc:HGNC:10785])

HSP 1 Score: 63.1586 bits (152), Expect = 3.894e-11
Identity = 27/69 (39.13%), Postives = 44/69 (63.77%), Query Frame = 3

Query:   66 RIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVE 272
            ++++G L     K ++ER F  +G +  VWVAR+PPGF+F+ F+   DA  AV +++ R   G R++VE
Sbjct:   11 KVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVE 79

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Human
Match: SRSF7 (serine and arginine rich splicing factor 7 [Source:HGNC Symbol;Acc:HGNC:10789])

HSP 1 Score: 62.3882 bits (150), Expect = 4.038e-11
Identity = 26/69 (37.68%), Postives = 44/69 (63.77%), Query Frame = 3

Query:   66 RIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVE 272
            ++++G L     K ++ER F  +G +  VW+AR+PPGF+F+ F+   DAE AV  ++ +   G R++VE
Sbjct:   12 KVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVE 80

[Close]

Query:   66 RIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVE 272
            ++++G L     K ++ER F  +G +  VW+AR+PPGF+F+ F+   DAE AV  ++ +   G R++VE
Sbjct:   12 KVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVE 80

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Celegans
Match: rsp-6 (Probable splicing factor, arginine/serine-rich 6 [Source:UniProtKB/Swiss-Prot;Acc:Q18409])

HSP 1 Score: 65.0846 bits (157), Expect = 3.546e-12
Identity = 28/69 (40.58%), Postives = 44/69 (63.77%), Query Frame = 3

Query:   66 RIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVE 272
            ++++GGL    T  ++E  F+RFG++  VWVAR PPGF+F+ +    DAE AV  ++  +  G R +VE
Sbjct:    4 KVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDGSRICGVRARVE 72

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Celegans
Match: Y57G11A.5 (pep chromosome:WBcel235:IV:14511884:14512505:-1 gene:WBGene00013293.1 transcript:Y57G11A.5.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Y57G11A.5)

HSP 1 Score: 49.2914 bits (116), Expect = 2.871e-7
Identity = 23/71 (32.39%), Postives = 38/71 (53.52%), Query Frame = 3

Query:   66 RIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVEHA 278
            ++++G +    T+ +IE  F   G +  +W+A+ PPGF+F+ FK    A  AV  +N +K      KVE  
Sbjct:   18 QVYVGNMPFDATEKEIEAVFSVMGPIKSIWMAKRPPGFAFVTFKRTVHAFDAVKYLNGKKICDLEAKVEMC 88

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Celegans
Match: rsp-1 (Probable splicing factor, arginine/serine-rich 1 [Source:UniProtKB/Swiss-Prot;Acc:Q23121])

HSP 1 Score: 51.6026 bits (122), Expect = 6.536e-7
Identity = 26/72 (36.11%), Postives = 44/72 (61.11%), Query Frame = 3

Query:   66 RIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVEHAR 281
            RI+IG L  +V++ DIE  F  +G++ DV +     GF F+ F    DAE AV  +N ++  GER+ +++++
Sbjct:    4 RIYIGRLTSRVSEKDIEHFFRGYGQIRDVLLKN---GFGFVEFDDKRDAEDAVHDLNGKELGGERVILDYSK 72

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Celegans
Match: rsp-1 (Probable splicing factor, arginine/serine-rich 1 [Source:UniProtKB/Swiss-Prot;Acc:Q23121])

HSP 1 Score: 48.9062 bits (115), Expect = 9.169e-7
Identity = 26/72 (36.11%), Postives = 44/72 (61.11%), Query Frame = 3

Query:   66 RIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVEHAR 281
            RI+IG L  +V++ DIE  F  +G++ DV +     GF F+ F    DAE AV  +N ++  GER+ +++++
Sbjct:    4 RIYIGRLTSRVSEKDIEHFFRGYGQIRDVLLKN---GFGFVEFDDKRDAEDAVHDLNGKELGGERVILDYSK 72

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Celegans
Match: rsp-1 (Probable splicing factor, arginine/serine-rich 1 [Source:UniProtKB/Swiss-Prot;Acc:Q23121])

HSP 1 Score: 48.9062 bits (115), Expect = 9.169e-7
Identity = 26/72 (36.11%), Postives = 44/72 (61.11%), Query Frame = 3

Query:   66 RIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVEHAR 281
            RI+IG L  +V++ DIE  F  +G++ DV +     GF F+ F    DAE AV  +N ++  GER+ +++++
Sbjct:    4 RIYIGRLTSRVSEKDIEHFFRGYGQIRDVLLKN---GFGFVEFDDKRDAEDAVHDLNGKELGGERVILDYSK 72

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Fly
Match: Rsf1 (gene:FBgn0011305 transcript:FBtr0333411)

HSP 1 Score: 75.485 bits (184), Expect = 1.782e-15
Identity = 31/73 (42.47%), Postives = 50/73 (68.49%), Query Frame = 3

Query:   54 HKGYRIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVE 272
             +G R+++G L  KV K D+E EF ++GK+  VW+A +PPGF+F+ F+H  DAE A   +N  + +G +++VE
Sbjct:    7 QRGTRVYVGNLTDKVKKDDLEGEFTKYGKLNSVWIAFNPPGFAFVEFEHRDDAEKACDILNGSELLGSQLRVE 79

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Fly
Match: Rsf1 (gene:FBgn0011305 transcript:FBtr0080079)

HSP 1 Score: 75.485 bits (184), Expect = 1.782e-15
Identity = 31/73 (42.47%), Postives = 50/73 (68.49%), Query Frame = 3

Query:   54 HKGYRIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVE 272
             +G R+++G L  KV K D+E EF ++GK+  VW+A +PPGF+F+ F+H  DAE A   +N  + +G +++VE
Sbjct:    7 QRGTRVYVGNLTDKVKKDDLEGEFTKYGKLNSVWIAFNPPGFAFVEFEHRDDAEKACDILNGSELLGSQLRVE 79

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Fly
Match: Rbp1-like (gene:FBgn0030479 transcript:FBtr0339838)

HSP 1 Score: 68.5514 bits (166), Expect = 1.967e-13
Identity = 30/79 (37.97%), Postives = 49/79 (62.03%), Query Frame = 3

Query:   36 PMYDPFHKGYRIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVE 272
            P Y  +    ++++G L    +KY+IE  F ++G + +VWVAR+PPGF+F+ F+   DAE A   ++  +  G RI+VE
Sbjct:    2 PRYREWDLACKVYVGNLGSSASKYEIENAFSKYGPLRNVWVARNPPGFAFVEFEDRRDAEDATRGLDGTRCCGTRIRVE 80

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Fly
Match: Rbp1-like (gene:FBgn0030479 transcript:FBtr0073790)

HSP 1 Score: 68.5514 bits (166), Expect = 1.967e-13
Identity = 30/79 (37.97%), Postives = 49/79 (62.03%), Query Frame = 3

Query:   36 PMYDPFHKGYRIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVE 272
            P Y  +    ++++G L    +KY+IE  F ++G + +VWVAR+PPGF+F+ F+   DAE A   ++  +  G RI+VE
Sbjct:    2 PRYREWDLACKVYVGNLGSSASKYEIENAFSKYGPLRNVWVARNPPGFAFVEFEDRRDAEDATRGLDGTRCCGTRIRVE 80

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Fly
Match: Rbp1 (gene:FBgn0260944 transcript:FBtr0082277)

HSP 1 Score: 67.781 bits (164), Expect = 2.886e-13
Identity = 29/79 (36.71%), Postives = 49/79 (62.03%), Query Frame = 3

Query:   36 PMYDPFHKGYRIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVE 272
            P Y  +    ++++G L    +K++IE  F ++G + +VWVAR+PPGF+F+ F+   DAE A   ++  +  G RI+VE
Sbjct:    2 PRYREWDLACKVYVGNLGSSASKHEIEGAFAKYGPLRNVWVARNPPGFAFVEFEDRRDAEDATRALDGTRCCGTRIRVE 80

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Zebrafish
Match: srsf7a (serine and arginine rich splicing factor 7a [Source:ZFIN;Acc:ZDB-GENE-040426-1798])

HSP 1 Score: 67.3958 bits (163), Expect = 1.351e-12
Identity = 28/69 (40.58%), Postives = 45/69 (65.22%), Query Frame = 3

Query:   66 RIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVE 272
            ++++G L     K ++ER F  +G +  VWVAR+PPGF+F+ ++ A DAE AV  M+ +   G R++VE
Sbjct:   15 KVYVGDLGNGAAKGELERAFSYYGPLRSVWVARNPPGFAFVEYEDARDAEDAVKGMDGKVLCGARVRVE 83

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Zebrafish
Match: srsf7a (serine and arginine rich splicing factor 7a [Source:ZFIN;Acc:ZDB-GENE-040426-1798])

HSP 1 Score: 66.6254 bits (161), Expect = 1.701e-12
Identity = 28/69 (40.58%), Postives = 45/69 (65.22%), Query Frame = 3

Query:   66 RIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVE 272
            ++++G L     K ++ER F  +G +  VWVAR+PPGF+F+ ++ A DAE AV  M+ +   G R++VE
Sbjct:   15 KVYVGDLGNGAAKGELERAFSYYGPLRSVWVARNPPGFAFVEYEDARDAEDAVKGMDGKVLCGARVRVE 83

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Zebrafish
Match: srsf7a (serine and arginine rich splicing factor 7a [Source:ZFIN;Acc:ZDB-GENE-040426-1798])

HSP 1 Score: 68.1662 bits (165), Expect = 1.929e-12
Identity = 28/69 (40.58%), Postives = 45/69 (65.22%), Query Frame = 3

Query:   66 RIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVE 272
            ++++G L     K ++ER F  +G +  VWVAR+PPGF+F+ ++ A DAE AV  M+ +   G R++VE
Sbjct:   15 KVYVGDLGNGAAKGELERAFSYYGPLRSVWVARNPPGFAFVEYEDARDAEDAVKGMDGKVLCGARVRVE 83

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Zebrafish
Match: srsf7a (serine and arginine rich splicing factor 7a [Source:ZFIN;Acc:ZDB-GENE-040426-1798])

HSP 1 Score: 68.1662 bits (165), Expect = 1.929e-12
Identity = 28/69 (40.58%), Postives = 45/69 (65.22%), Query Frame = 3

Query:   66 RIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVE 272
            ++++G L     K ++ER F  +G +  VWVAR+PPGF+F+ ++ A DAE AV  M+ +   G R++VE
Sbjct:   15 KVYVGDLGNGAAKGELERAFSYYGPLRSVWVARNPPGFAFVEYEDARDAEDAVKGMDGKVLCGARVRVE 83

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Zebrafish
Match: srsf7a (serine and arginine rich splicing factor 7a [Source:ZFIN;Acc:ZDB-GENE-040426-1798])

HSP 1 Score: 68.1662 bits (165), Expect = 2.153e-12
Identity = 28/69 (40.58%), Postives = 45/69 (65.22%), Query Frame = 3

Query:   66 RIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVE 272
            ++++G L     K ++ER F  +G +  VWVAR+PPGF+F+ ++ A DAE AV  M+ +   G R++VE
Sbjct:   15 KVYVGDLGNGAAKGELERAFSYYGPLRSVWVARNPPGFAFVEYEDARDAEDAVKGMDGKVLCGARVRVE 83

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Xenopus
Match: phex (phosphate regulating endopeptidase homolog X-linked [Source:Xenbase;Acc:XB-GENE-1012247])

HSP 1 Score: 63.1586 bits (152), Expect = 3.116e-11
Identity = 27/69 (39.13%), Postives = 44/69 (63.77%), Query Frame = 3

Query:   66 RIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVE 272
            ++++G L     K ++ER F  +G +  VWVAR+PPGF+F+ F+   DA  AV +++ R   G R++VE
Sbjct:   11 KVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVE 79

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Xenopus
Match: grm6 (glutamate receptor, metabotropic 6 [Source:Xenbase;Acc:XB-GENE-949374])

HSP 1 Score: 67.3958 bits (163), Expect = 3.184e-11
Identity = 32/74 (43.24%), Postives = 49/74 (66.22%), Query Frame = 3

Query:   66 RIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVEHARNP 287
            R++IG L+ +  + D+ER F+ FGK+ +V +     G+ F+ F+ + DAE AV +MN R+  GER+ VEHAR P
Sbjct:    8 RVYIGRLSHRARERDVERFFKGFGKIVEVDL---KNGYGFVEFEDSRDAEDAVYEMNGRELCGERVIVEHARAP 78

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Xenopus
Match: grm6 (glutamate receptor, metabotropic 6 [Source:Xenbase;Acc:XB-GENE-949374])

HSP 1 Score: 67.3958 bits (163), Expect = 3.216e-11
Identity = 32/74 (43.24%), Postives = 49/74 (66.22%), Query Frame = 3

Query:   66 RIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVEHARNP 287
            R++IG L+ +  + D+ER F+ FGK+ +V +     G+ F+ F+ + DAE AV +MN R+  GER+ VEHAR P
Sbjct:    8 RVYIGRLSHRARERDVERFFKGFGKIVEVDL---KNGYGFVEFEDSRDAEDAVYEMNGRELCGERVIVEHARAP 78

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Xenopus
Match: phex (phosphate regulating endopeptidase homolog X-linked [Source:Xenbase;Acc:XB-GENE-1012247])

HSP 1 Score: 62.3882 bits (150), Expect = 3.639e-11
Identity = 27/69 (39.13%), Postives = 44/69 (63.77%), Query Frame = 3

Query:   66 RIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVE 272
            ++++G L     K ++ER F  +G +  VWVAR+PPGF+F+ F+   DA  AV +++ R   G R++VE
Sbjct:   11 KVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVE 79

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Xenopus
Match: sms (spermine synthase [Source:Xenbase;Acc:XB-GENE-953534])

HSP 1 Score: 63.5438 bits (153), Expect = 7.208e-11
Identity = 26/69 (37.68%), Postives = 44/69 (63.77%), Query Frame = 3

Query:   66 RIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVE 272
            ++++G L     K ++ER F  +G +  VW+AR+PPGF+F+ F+   DAE AV  ++ +   G R++VE
Sbjct:   12 KVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDTRDAEDAVRGLDGKVICGSRVRVE 80

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Mouse
Match: Srsf3 (serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285])

HSP 1 Score: 62.3882 bits (150), Expect = 1.869e-11
Identity = 27/69 (39.13%), Postives = 44/69 (63.77%), Query Frame = 3

Query:   66 RIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVE 272
            ++++G L     K ++ER F  +G +  VWVAR+PPGF+F+ F+   DA  AV +++ R   G R++VE
Sbjct:   11 KVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVE 79

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Mouse
Match: Srsf3 (serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285])

HSP 1 Score: 63.1586 bits (152), Expect = 2.674e-11
Identity = 27/69 (39.13%), Postives = 44/69 (63.77%), Query Frame = 3

Query:   66 RIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVE 272
            ++++G L     K ++ER F  +G +  VWVAR+PPGF+F+ F+   DA  AV +++ R   G R++VE
Sbjct:   11 KVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVE 79

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Mouse
Match: Srsf7 (serine/arginine-rich splicing factor 7 [Source:MGI Symbol;Acc:MGI:1926232])

HSP 1 Score: 62.3882 bits (150), Expect = 2.772e-11
Identity = 26/69 (37.68%), Postives = 44/69 (63.77%), Query Frame = 3

Query:   66 RIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVE 272
            ++++G L     K ++ER F  +G +  VW+AR+PPGF+F+ F+   DAE AV  ++ +   G R++VE
Sbjct:   12 KVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVE 80

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Mouse
Match: Gm29289 (predicted gene 29289 [Source:MGI Symbol;Acc:MGI:5579995])

HSP 1 Score: 62.3882 bits (150), Expect = 4.720e-11
Identity = 36/84 (42.86%), Postives = 49/84 (58.33%), Query Frame = 3

Query:   66 RIFIGGLNPKVTKYDIEREFERFGKVTDVWVARS-----PPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVEHARNPSNPKS 302
            +IFIGGLN K  +  ++  F RFG V  V + R        GF+FL F+   DA+ AV +MN     G+RIKV+ AR PS+ +S
Sbjct:    9 KIFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAFLTFRRLADAKNAVKEMNGVILDGKRIKVKQARRPSSLES 92

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BLAST of RRM domain-containing protein vs. Ensembl Mouse
Match: Srsf7 (serine/arginine-rich splicing factor 7 [Source:MGI Symbol;Acc:MGI:1926232])

HSP 1 Score: 62.3882 bits (150), Expect = 1.108e-10
Identity = 26/69 (37.68%), Postives = 44/69 (63.77%), Query Frame = 3

Query:   66 RIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVE 272
            ++++G L     K ++ER F  +G +  VW+AR+PPGF+F+ F+   DAE AV  ++ +   G R++VE
Sbjct:   12 KVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVE 80

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BLAST of RRM domain-containing protein vs. UniProt/SwissProt
Match: sp|Q24491|RX21_DROME (RNA-binding protein Rsf1 OS=Drosophila melanogaster OX=7227 GN=Rsf1 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.941e-14
Identity = 31/73 (42.47%), Postives = 50/73 (68.49%), Query Frame = 3

Query:   54 HKGYRIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVE 272
             +G R+++G L  KV K D+E EF ++GK+  VW+A +PPGF+F+ F+H  DAE A   +N  + +G +++VE
Sbjct:    4 QRGTRVYVGNLTDKVKKDDLEGEFTKYGKLNSVWIAFNPPGFAFVEFEHRDDAEKACDILNGSELLGSQLRVE 76

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BLAST of RRM domain-containing protein vs. UniProt/SwissProt
Match: sp|Q02427|RBP1_DROME (RNA-binding protein 1 OS=Drosophila melanogaster OX=7227 GN=Rbp1 PE=2 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 2.893e-12
Identity = 29/79 (36.71%), Postives = 49/79 (62.03%), Query Frame = 3

Query:   36 PMYDPFHKGYRIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVE 272
            P Y  +    ++++G L    +K++IE  F ++G + +VWVAR+PPGF+F+ F+   DAE A   ++  +  G RI+VE
Sbjct:    2 PRYREWDLACKVYVGNLGSSASKHEIEGAFAKYGPLRNVWVARNPPGFAFVEFEDRRDAEDATRALDGTRCCGTRIRVE 80

[Close]

BLAST of RRM domain-containing protein vs. UniProt/SwissProt
Match: sp|Q18409|RSP6_CAEEL (Probable splicing factor, arginine/serine-rich 6 OS=Caenorhabditis elegans OX=6239 GN=rsp-6 PE=3 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 4.511e-11
Identity = 28/69 (40.58%), Postives = 44/69 (63.77%), Query Frame = 3

Query:   66 RIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVE 272
            ++++GGL    T  ++E  F+RFG++  VWVAR PPGF+F+ +    DAE AV  ++  +  G R +VE
Sbjct:    4 KVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDGSRICGVRARVE 72

[Close]

BLAST of RRM domain-containing protein vs. UniProt/SwissProt
Match: sp|O81127|RSZ21_ARATH (Serine/arginine-rich splicing factor RSZ21 OS=Arabidopsis thaliana OX=3702 GN=RSZ21 PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 5.066e-11
Identity = 31/70 (44.29%), Postives = 50/70 (71.43%), Query Frame = 3

Query:   66 RIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVEH 275
            R+++G L+P+VT+ ++E EF+ FG + +VWVAR PPG++FL F    DA  A++ + DRK  G R+++ H
Sbjct:    3 RVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISAL-DRK-NGWRVELSH 70

[Close]

BLAST of RRM domain-containing protein vs. UniProt/SwissProt
Match: sp|Q9SJA6|RZ22A_ARATH (Serine/arginine-rich splicing factor RSZ22A OS=Arabidopsis thaliana OX=3702 GN=RSZ22A PE=1 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 7.444e-11
Identity = 28/70 (40.00%), Postives = 48/70 (68.57%), Query Frame = 3

Query:   66 RIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVEH 275
            R+++G L+P+VT+ ++E EF  FG +  VWVAR PPG++FL F+ + DA  A+ +++ +   G R++  H
Sbjct:    3 RVYVGNLDPRVTERELEDEFRSFGVIRSVWVARRPPGYAFLDFEDSRDARDAIREVDGKN--GWRVEQSH 70

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BLAST of RRM domain-containing protein vs. TrEMBL
Match: Q5BTG2 (SJCHGC01414 protein (Fragment) OS=Schistosoma japonicum OX=6182 PE=2 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 1.824e-25
Identity = 48/88 (54.55%), Postives = 67/88 (76.14%), Query Frame = 3

Query:   21 LQMGSPMYDPFHKGYRIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVEHARN 284
            L +  P YD    GYR+F+GG++P+V K DIE+EFERFG + DVWVAR+PPGF+F++FK+A DA+ AV +M+  +  G R++VEHA N
Sbjct:    4 LLVSMPKYDRQANGYRVFVGGVDPRVGKVDIEQEFERFGPIADVWVARNPPGFAFIVFKYAEDADRAVRRMDGSRPFGSRLRVEHAVN 91

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BLAST of RRM domain-containing protein vs. TrEMBL
Match: C1LI84 (RNA-binding protein 1 OS=Schistosoma japonicum OX=6182 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 8.219e-25
Identity = 47/83 (56.63%), Postives = 65/83 (78.31%), Query Frame = 3

Query:   36 PMYDPFHKGYRIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVEHARN 284
            P YD    GYR+F+GG++P+V K DIE+EFERFG + DVWVAR+PPGF+F++FK+A DA+ AV +M+  +  G R++VEHA N
Sbjct:    2 PKYDRQANGYRVFVGGVDPRVGKVDIEQEFERFGPIADVWVARNPPGFAFIVFKYAEDADRAVRRMDGSRPFGSRLRVEHAVN 84

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BLAST of RRM domain-containing protein vs. TrEMBL
Match: Q5DBQ6 (RRM domain-containing protein OS=Schistosoma japonicum OX=6182 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.423e-24
Identity = 47/83 (56.63%), Postives = 65/83 (78.31%), Query Frame = 3

Query:   36 PMYDPFHKGYRIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVEHARN 284
            P YD    GYR+F+GG++P+V K DIE+EFERFG + DVWVAR+PPGF+F++FK+A DA+ AV +M+  +  G R++VEHA N
Sbjct:    2 PKYDRQANGYRVFVGGVDPRVGKVDIEQEFERFGPIADVWVARNPPGFAFIVFKYAEDADRAVRRMDGSRPFGSRLRVEHAVN 84

[Close]

BLAST of RRM domain-containing protein vs. TrEMBL
Match: A0A3Q0KHH7 (Putative arginine/serine-rich splicing factor OS=Schistosoma mansoni OX=6183 PE=4 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.881e-24
Identity = 47/83 (56.63%), Postives = 65/83 (78.31%), Query Frame = 3

Query:   36 PMYDPFHKGYRIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVEHARN 284
            P YD    GYR+F+GG++P+V K DIE+EFERFG + DVWVAR+PPGF+F++FK+A DA+ AV +M+  +  G R++VEHA N
Sbjct:    2 PKYDRQANGYRVFVGGVDPRVGKVDIEQEFERFGPIADVWVARNPPGFAFIVFKYAEDADRAVRRMDGSRPFGSRLRVEHAVN 84

[Close]

BLAST of RRM domain-containing protein vs. TrEMBL
Match: A0A4Z2DH71 (RNA-binding protein OS=Schistosoma japonicum OX=6182 GN=EWB00_001055 PE=4 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 2.375e-24
Identity = 47/83 (56.63%), Postives = 65/83 (78.31%), Query Frame = 3

Query:   36 PMYDPFHKGYRIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVEHARN 284
            P YD    GYR+F+GG++P+V K DIE+EFERFG + DVWVAR+PPGF+F++FK+A DA+ AV +M+  +  G R++VEHA N
Sbjct:    2 PKYDRQANGYRVFVGGVDPRVGKVDIEQEFERFGPIADVWVARNPPGFAFIVFKYAEDADRAVRRMDGSRPFGSRLRVEHAVN 84

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Cavefish
Match: ENSAMXT00000031432.1 (serine/arginine-rich splicing factor 7-like [Source:NCBI gene;Acc:103041487])

HSP 1 Score: 67.3958 bits (163), Expect = 3.210e-12
Identity = 28/69 (40.58%), Postives = 45/69 (65.22%), Query Frame = 3

Query:   66 RIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVE 272
            ++++G L     K ++ER F  +G +  VWVAR+PPGF+F+ ++ A DAE +V  M+ +   G RI+VE
Sbjct:   19 KVYVGDLGSGAAKAELERAFSYYGPLRSVWVARNPPGFAFVEYEDARDAEDSVKGMDGKVLCGSRIRVE 87

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Cavefish
Match: srsf3b (serine and arginine rich splicing factor 3 [Source:NCBI gene;Acc:103046708])

HSP 1 Score: 64.3142 bits (155), Expect = 7.637e-12
Identity = 31/83 (37.35%), Postives = 49/83 (59.04%), Query Frame = 3

Query:   27 MGSP-MYDPFHKGYRIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVE 272
            MG P M+       ++++G L     K ++ER F  +G +  VWVAR+PPGF+F+ F+   DA  AV +++ R   G R++VE
Sbjct:    1 MGDPSMHRDCPLDCKVYVGNLGNNGNKSELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDATDAVRELDGRNLCGCRVRVE 83

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Cavefish
Match: srsf5b (serine/arginine-rich splicing factor 5 [Source:NCBI gene;Acc:103029514])

HSP 1 Score: 62.7734 bits (151), Expect = 1.915e-11
Identity = 31/74 (41.89%), Postives = 47/74 (63.51%), Query Frame = 3

Query:   60 GYRIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVEHAR 281
            G RIFIG LNP   + D+ER F+ +G++ D+ + R   GF F+ F    DAE AV +++ ++   ER+ +EHAR
Sbjct:    3 GCRIFIGRLNPSAREKDVERFFKGYGRIRDIDLKR---GFGFVEFDDPRDAEDAVYELDGKELCNERVTIEHAR 73

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Cavefish
Match: srsf3b (serine and arginine rich splicing factor 3 [Source:NCBI gene;Acc:103046708])

HSP 1 Score: 63.1586 bits (152), Expect = 2.118e-11
Identity = 31/83 (37.35%), Postives = 49/83 (59.04%), Query Frame = 3

Query:   27 MGSP-MYDPFHKGYRIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVE 272
            MG P M+       ++++G L     K ++ER F  +G +  VWVAR+PPGF+F+ F+   DA  AV +++ R   G R++VE
Sbjct:    1 MGDPSMHRDCPLDCKVYVGNLGNNGNKSELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDATDAVRELDGRNLCGCRVRVE 83

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Cavefish
Match: srsf5b (serine/arginine-rich splicing factor 5 [Source:NCBI gene;Acc:103029514])

HSP 1 Score: 64.6994 bits (156), Expect = 2.892e-11
Identity = 31/74 (41.89%), Postives = 47/74 (63.51%), Query Frame = 3

Query:   60 GYRIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVEHAR 281
            G RIFIG LNP   + D+ER F+ +G++ D+ + R   GF F+ F    DAE AV +++ ++   ER+ +EHAR
Sbjct:    3 GCRIFIGRLNPSAREKDVERFFKGYGRIRDIDLKR---GFGFVEFDDPRDAEDAVYELDGKELCNERVTIEHAR 73

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Sea Lamprey
Match: srsf3a (serine and arginine rich splicing factor 3a [Source:ZFIN;Acc:ZDB-GENE-030616-631])

HSP 1 Score: 68.1662 bits (165), Expect = 8.164e-14
Identity = 28/71 (39.44%), Postives = 46/71 (64.79%), Query Frame = 3

Query:   66 RIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVEHA 278
            ++++G L     K ++ER F  +G +  VWVAR+PPGF+F+ F+   DA  AV +++ R   G R++VEH+
Sbjct:   16 KVYVGNLGNNGNKAELERSFSYYGPLRSVWVARAPPGFAFVEFEDPRDAGDAVRELDGRTLCGSRVRVEHS 86

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Sea Lamprey
Match: ENSPMAT00000006373.1 (pep scaffold:Pmarinus_7.0:GL478975:164155:166212:-1 gene:ENSPMAG00000005755.1 transcript:ENSPMAT00000006373.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 69.3218 bits (168), Expect = 1.762e-13
Identity = 27/71 (38.03%), Postives = 47/71 (66.20%), Query Frame = 3

Query:   66 RIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVEHA 278
            ++++G L    T+YD+E+ F  +G +  VWVAR+PPGF+F+ F+ A DA  +  +++ R   G R++VE +
Sbjct:   16 KVYVGNLGSGATEYDLEKVFSYYGPLRSVWVARNPPGFAFVQFEDARDARDSCRELDGRLVCGSRVRVEMS 86

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Sea Lamprey
Match: SRSF5 (serine and arginine rich splicing factor 5 [Source:HGNC Symbol;Acc:HGNC:10787])

HSP 1 Score: 60.077 bits (144), Expect = 2.548e-10
Identity = 30/74 (40.54%), Postives = 44/74 (59.46%), Query Frame = 3

Query:   66 RIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVEHARNP 287
            R+FI  L P V   D+E+ F+ +GK+ D+ +     GF F+ F    DA+ AV+ +N R+   ER+ VEHAR P
Sbjct:    6 RVFIARLGPHVRTKDVEKFFKGYGKIRDIDIK---AGFGFVEFDDCRDADDAVSDLNGRELNNERMTVEHARAP 76

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Sea Lamprey
Match: ENSPMAT00000010377.1 (pep scaffold:Pmarinus_7.0:GL481287:28:8451:-1 gene:ENSPMAG00000009397.1 transcript:ENSPMAT00000010377.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 58.5362 bits (140), Expect = 6.119e-10
Identity = 28/74 (37.84%), Postives = 45/74 (60.81%), Query Frame = 3

Query:   66 RIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVEHARNP 287
            RI++G L+ +    DIER F+ +GK+ ++ +     GF F+ F    DA  AV +++ R+  GER+ +EHAR P
Sbjct:    3 RIYLGNLSYRARDKDIERFFKGYGKIVEISIKH---GFGFVEFDDTRDANDAVCELSGRELCGERVVIEHARGP 73

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Sea Lamprey
Match: srsf7a (serine and arginine rich splicing factor 7a [Source:ZFIN;Acc:ZDB-GENE-040426-1798])

HSP 1 Score: 53.1434 bits (126), Expect = 2.124e-8
Identity = 23/66 (34.85%), Postives = 39/66 (59.09%), Query Frame = 3

Query:   75 IGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVE 272
            +G L  +  K ++ + F  +G + +VWVAR+PP  +F+ ++   DAE AV  ++ R   G R+ VE
Sbjct:    1 VGNLGTRAAKGELWQAFGYYGALRNVWVARNPPAVAFVEYEDTRDAEDAVRGLDGRLLCGSRVSVE 66

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Nematostella
Match: EDO31305 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SYA8])

HSP 1 Score: 84.7297 bits (208), Expect = 1.037e-19
Identity = 37/75 (49.33%), Postives = 53/75 (70.67%), Query Frame = 3

Query:   66 RIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVEHARNPS 290
            R++IG +    +K +IEREFE FG + DVWVAR+PPGF+F +F+   DAE AV +++ R   G+R +VE A+ PS
Sbjct:    3 RVYIGNIGDNASKREIEREFETFGPLRDVWVARNPPGFAFCVFEDRRDAEDAVRELDGRYICGQRARVELAKGPS 77

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Nematostella
Match: EDO31304 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SYA7])

HSP 1 Score: 74.3294 bits (181), Expect = 1.125e-16
Identity = 35/75 (46.67%), Postives = 51/75 (68.00%), Query Frame = 3

Query:   66 RIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVEHARNPS 290
            +++IG L    +K +IE EF  +G + DVWVAR+PPGF+F IF    DAE AV +++ R   G+R++VE A+ PS
Sbjct:    3 KVYIGSLGDNASKREIENEFGYYGPLKDVWVARNPPGFAFCIFDDRRDAEDAVRELDGRYICGQRVRVELAKGPS 77

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Nematostella
Match: EDO30175 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7T1I7])

HSP 1 Score: 62.7734 bits (151), Expect = 2.121e-12
Identity = 27/73 (36.99%), Postives = 47/73 (64.38%), Query Frame = 3

Query:   66 RIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVEHARN 284
            ++++G L       ++ER FE+FG+++ VWVAR+PPGF+F+ ++   DAE AV +++        I+VE + N
Sbjct:    4 KLYVGNLGRNADSSELERAFEKFGRLSKVWVARNPPGFAFVEYEDYRDAEEAVRELDGANVCDRTIRVEFSNN 76

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Nematostella
Match: EDO30178 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7T1I6])

HSP 1 Score: 62.3882 bits (150), Expect = 4.195e-12
Identity = 26/69 (37.68%), Postives = 47/69 (68.12%), Query Frame = 3

Query:   66 RIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVE 272
            ++++G L  +  ++++   F+ +G++ DVWVAR+PPGF+F+ F  A DA  AV  ++  +  G+R+KVE
Sbjct:    5 KVWVGNLGKEGDRHELWEAFKSYGELRDVWVARNPPGFAFVEFYDARDARDAVDALDGERICGQRVKVE 73

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Nematostella
Match: EDO47776 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RL13])

HSP 1 Score: 53.1434 bits (126), Expect = 3.068e-8
Identity = 31/78 (39.74%), Postives = 53/78 (67.95%), Query Frame = 3

Query:   57 KGYRIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVEHARNPS 290
            +G R+F+G L P+    D+E+ F+ FG++ D+ + +   GF+F+ F  A DA+ AV ++N ++ +GER+ VEHA +PS
Sbjct:    4 EGGRVFVGRLPPRANDRDLEKFFKGFGRINDINLKQ---GFAFVEFDDARDADDAVYELNHKELLGERVSVEHA-HPS 77

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Medaka
Match: srsf7a (serine/arginine-rich splicing factor 7 [Source:NCBI gene;Acc:101155211])

HSP 1 Score: 66.2402 bits (160), Expect = 6.720e-12
Identity = 28/69 (40.58%), Postives = 44/69 (63.77%), Query Frame = 3

Query:   66 RIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVE 272
            ++++G L     K ++ER F  +G +  VWVAR+PPGF+F+ F+   DAE AV  M+ +   G R++VE
Sbjct:   17 KVYVGDLGNGAAKGELERAFSYYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVKGMDGKLLCGSRVRVE 85

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Medaka
Match: srsf7a (serine/arginine-rich splicing factor 7 [Source:NCBI gene;Acc:101155211])

HSP 1 Score: 65.4698 bits (158), Expect = 1.847e-11
Identity = 28/69 (40.58%), Postives = 44/69 (63.77%), Query Frame = 3

Query:   66 RIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVE 272
            ++++G L     K ++ER F  +G +  VWVAR+PPGF+F+ F+   DAE AV  M+ +   G R++VE
Sbjct:   17 KVYVGDLGNGAAKGELERAFSYYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVKGMDGKLLCGSRVRVE 85

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Medaka
Match: SRSF3 (serine/arginine-rich splicing factor 3 [Source:NCBI gene;Acc:101168533])

HSP 1 Score: 63.5438 bits (153), Expect = 5.038e-11
Identity = 27/69 (39.13%), Postives = 44/69 (63.77%), Query Frame = 3

Query:   66 RIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVE 272
            ++++G L     K ++ER F  +G +  VWVAR+PPGF+F+ F+   DA  AV +++ R   G R++VE
Sbjct:   76 KVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDATDAVRELDGRTLCGCRVRVE 144

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Medaka
Match: SRSF3 (serine/arginine-rich splicing factor 3 [Source:NCBI gene;Acc:101168533])

HSP 1 Score: 62.7734 bits (151), Expect = 7.109e-11
Identity = 27/69 (39.13%), Postives = 44/69 (63.77%), Query Frame = 3

Query:   66 RIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVE 272
            ++++G L     K ++ER F  +G +  VWVAR+PPGF+F+ F+   DA  AV +++ R   G R++VE
Sbjct:   76 KVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDATDAVRELDGRTLCGCRVRVE 144

[Close]

BLAST of RRM domain-containing protein vs. Ensembl Medaka
Match: srsf3a (serine and arginine rich splicing factor 3a [Source:ZFIN;Acc:ZDB-GENE-030616-631])

HSP 1 Score: 61.6178 bits (148), Expect = 7.738e-11
Identity = 27/69 (39.13%), Postives = 44/69 (63.77%), Query Frame = 3

Query:   66 RIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVE 272
            ++++G L     K ++ER F  +G +  VWVAR+PPGF+F+ F+   DA  AV +++ R   G R++VE
Sbjct:   13 KVYVGNLGNNGNKTELERAFGYYGPLRTVWVARNPPGFAFVEFEDPRDASDAVRELDGRTMCGCRVRVE 81

[Close]

BLAST of RRM domain-containing protein vs. Planmine SMEST
Match: SMESG000039881.1 (SMESG000039881.1)

HSP 1 Score: 383.259 bits (983), Expect = 1.213e-130
Identity = 332/334 (99.40%), Postives = 333/334 (99.70%), Query Frame = 3

Query:   27 MGSPMYDPFHKGYRIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVEHARNPSNPKSQXXXXXXXXXXXXXXXXXXXXXXXAGKYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSFRKNRSRSGTPKKFHSTSLSGKRNVSGSRSIKDKSASSFKRDNXXXXXXXXXXXXXLNREIISRSPSAHKELSESGSEKDXXXXXXXXXXXXXXXXXXXXXXINRTQQSRNDSLDNVNYDXXXXXXXXXXXXXXXXXXXXXXXXXXVERNGNDSPSSLVNGSRCRSSSACGEEI 1028
            MGSPMYDPFHKGYRIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVEHARNPSNPKSQRGGRSKSREYKRSRSRDKYRSRSAGKYRSRS+DKRRRSRHRDKSSDDRRSKRRKSRSIRKNRSRSTSFRKNRSRS TPKKFHSTSLSGKRNVSGSRSIKDKSASSFKRDNSRSVSVKKDRSRSLNREIISRSPSAHKELSESGSEKDRCRSTSNRRSHSSKSSSRSSDRINRTQQSRNDSLDNVNYDRSLSKHSSRKSSSGSTRIRRRSKSSSVERNGNDSPSSLVNGSRCRSSSACGEEI
Sbjct:    1 MGSPMYDPFHKGYRIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVEHARNPSNPKSQRGGRSKSREYKRSRSRDKYRSRSAGKYRSRSKDKRRRSRHRDKSSDDRRSKRRKSRSIRKNRSRSTSFRKNRSRSATPKKFHSTSLSGKRNVSGSRSIKDKSASSFKRDNSRSVSVKKDRSRSLNREIISRSPSAHKELSESGSEKDRCRSTSNRRSHSSKSSSRSSDRINRTQQSRNDSLDNVNYDRSLSKHSSRKSSSGSTRIRRRSKSSSVERNGNDSPSSLVNGSRCRSSSACGEEI 334

[Close]

BLAST of RRM domain-containing protein vs. Planmine SMEST
Match: SMESG000039881.1 (SMESG000039881.1)

HSP 1 Score: 374.4 bits (960), Expect = 2.564e-127
Identity = 328/330 (99.39%), Postives = 329/330 (99.70%), Query Frame = 3

Query:   39 MYDPFHKGYRIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVEHARNPSNPKSQXXXXXXXXXXXXXXXXXXXXXXXAGKYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSFRKNRSRSGTPKKFHSTSLSGKRNVSGSRSIKDKSASSFKRDNXXXXXXXXXXXXXLNREIISRSPSAHKELSESGSEKDXXXXXXXXXXXXXXXXXXXXXXINRTQQSRNDSLDNVNYDXXXXXXXXXXXXXXXXXXXXXXXXXXVERNGNDSPSSLVNGSRCRSSSACGEEI 1028
            MYDPFHKGYRIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVEHARNPSNPKSQRGGRSKSREYKRSRSRDKYRSRSAGKYRSRS+DKRRRSRHRDKSSDDRRSKRRKSRSIRKNRSRSTSFRKNRSRS TPKKFHSTSLSGKRNVSGSRSIKDKSASSFKRDNSRSVSVKKDRSRSLNREIISRSPSAHKELSESGSEKDRCRSTSNRRSHSSKSSSRSSDRINRTQQSRNDSLDNVNYDRSLSKHSSRKSSSGSTRIRRRSKSSSVERNGNDSPSSLVNGSRCRSSSACGEEI
Sbjct:    1 MYDPFHKGYRIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVEHARNPSNPKSQRGGRSKSREYKRSRSRDKYRSRSAGKYRSRSKDKRRRSRHRDKSSDDRRSKRRKSRSIRKNRSRSTSFRKNRSRSATPKKFHSTSLSGKRNVSGSRSIKDKSASSFKRDNSRSVSVKKDRSRSLNREIISRSPSAHKELSESGSEKDRCRSTSNRRSHSSKSSSRSSDRINRTQQSRNDSLDNVNYDRSLSKHSSRKSSSGSTRIRRRSKSSSVERNGNDSPSSLVNGSRCRSSSACGEEI 330

[Close]

BLAST of RRM domain-containing protein vs. Planmine SMEST
Match: SMESG000006493.1 (SMESG000006493.1)

HSP 1 Score: 64.3142 bits (155), Expect = 2.787e-12
Identity = 29/78 (37.18%), Postives = 48/78 (61.54%), Query Frame = 3

Query:   66 RIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVEHARNPSNPK 299
            ++++G L     + +IE+ F+ FG +  VWVAR+P GF+F++F    DAE AV +++     G R++VE +   S PK
Sbjct:    9 KVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSRPK 86

[Close]

BLAST of RRM domain-containing protein vs. Planmine SMEST
Match: SMESG000015564.1 (SMESG000015564.1)

HSP 1 Score: 53.1434 bits (126), Expect = 2.182e-7
Identity = 24/72 (33.33%), Postives = 46/72 (63.89%), Query Frame = 3

Query:   66 RIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVEHAR 281
            R+FIG L+ + ++ D+ER F+ +G++ D+   R   G+ F+ F +  DA+ A+  ++ ++  G R+ +EHAR
Sbjct:    3 RVFIGRLSDRASERDVERFFKGYGRIKDI---RLKSGYGFVEFDNERDADDAIHDLHHKELAGGRVVLEHAR 71

[Close]

BLAST of RRM domain-containing protein vs. Planmine SMEST
Match: SMESG000077573.1 (SMESG000077573.1)

HSP 1 Score: 49.6766 bits (117), Expect = 1.895e-6
Identity = 25/73 (34.25%), Postives = 41/73 (56.16%), Query Frame = 3

Query:   66 RIFIGGLNPKVTKYDIEREFERFGKVTDVWVA-RSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVEHAR 281
            ++++G L P +   D++  F +FGK+ D+ +  R  P F+F+ F    DAE AV   N   + G R++VE  R
Sbjct:   11 KLYVGNLPPDIRHRDLDDLFYKFGKIVDIDIKDRKKPPFAFIEFDDPRDAEDAVTGRNGYNYDGYRLRVEFPR 83

The following BLAST results are available for this feature:

BLAST of RRM domain-containing protein vs. Ensembl Human
BLAST of RRM domain-containing protein vs. Ensembl Celegans
BLAST of RRM domain-containing protein vs. Ensembl Fly
BLAST of RRM domain-containing protein vs. Ensembl Zebrafish
BLAST of RRM domain-containing protein vs. Ensembl Xenopus
BLAST of RRM domain-containing protein vs. Ensembl Mouse
BLAST of RRM domain-containing protein vs. UniProt/SwissProt
BLAST of RRM domain-containing protein vs. TrEMBL
BLAST of RRM domain-containing protein vs. Ensembl Cavefish
BLAST of RRM domain-containing protein vs. Ensembl Sea Lamprey
BLAST of RRM domain-containing protein vs. Ensembl Yeast
BLAST of RRM domain-containing protein vs. Ensembl Nematostella
BLAST of RRM domain-containing protein vs. Ensembl Medaka
BLAST of RRM domain-containing protein vs. Planmine SMEST

BLAST of RRM domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5


Match Name	E-value	Identity	Description
SRSF3	2.722e-11	39.13	serine and arginine rich splicing factor 3 [Source...	[more]
SRSF3	3.894e-11	39.13	serine and arginine rich splicing factor 3 [Source...	[more]
SRSF3	3.894e-11	39.13	serine and arginine rich splicing factor 3 [Source...	[more]
SRSF7	4.038e-11	37.68	serine and arginine rich splicing factor 7 [Source...	[more]
SRSF7	4.038e-11	37.68	serine and arginine rich splicing factor 7 [Source...	[more]

BLAST of RRM domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 5


Match Name	E-value	Identity	Description
rsp-6	3.546e-12	40.58	Probable splicing factor, arginine/serine-rich 6 ...	[more]
Y57G11A.5	2.871e-7	32.39	pep chromosome:WBcel235:IV:14511884:14512505:-1 ge...	[more]
rsp-1	6.536e-7	36.11	Probable splicing factor, arginine/serine-rich 1 ...	[more]
rsp-1	9.169e-7	36.11	Probable splicing factor, arginine/serine-rich 1 ...	[more]
rsp-1	9.169e-7	36.11	Probable splicing factor, arginine/serine-rich 1 ...	[more]

BLAST of RRM domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 5


Match Name	E-value	Identity	Description
Rsf1	1.782e-15	42.47	gene:FBgn0011305 transcript:FBtr0333411	[more]
Rsf1	1.782e-15	42.47	gene:FBgn0011305 transcript:FBtr0080079	[more]
Rbp1-like	1.967e-13	37.97	gene:FBgn0030479 transcript:FBtr0339838	[more]
Rbp1-like	1.967e-13	37.97	gene:FBgn0030479 transcript:FBtr0073790	[more]
Rbp1	2.886e-13	36.71	gene:FBgn0260944 transcript:FBtr0082277	[more]

BLAST of RRM domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
srsf7a	1.351e-12	40.58	serine and arginine rich splicing factor 7a [Sourc...	[more]
srsf7a	1.701e-12	40.58	serine and arginine rich splicing factor 7a [Sourc...	[more]
srsf7a	1.929e-12	40.58	serine and arginine rich splicing factor 7a [Sourc...	[more]
srsf7a	1.929e-12	40.58	serine and arginine rich splicing factor 7a [Sourc...	[more]
srsf7a	2.153e-12	40.58	serine and arginine rich splicing factor 7a [Sourc...	[more]

BLAST of RRM domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5


Match Name	E-value	Identity	Description
phex	3.116e-11	39.13	phosphate regulating endopeptidase homolog X-linke...	[more]
grm6	3.184e-11	43.24	glutamate receptor, metabotropic 6 [Source:Xenbase...	[more]
grm6	3.216e-11	43.24	glutamate receptor, metabotropic 6 [Source:Xenbase...	[more]
phex	3.639e-11	39.13	phosphate regulating endopeptidase homolog X-linke...	[more]
sms	7.208e-11	37.68	spermine synthase [Source:Xenbase;Acc:XB-GENE-9535...	[more]

BLAST of RRM domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5


Match Name	E-value	Identity	Description
Srsf3	1.869e-11	39.13	serine/arginine-rich splicing factor 3 [Source:MGI...	[more]
Srsf3	2.674e-11	39.13	serine/arginine-rich splicing factor 3 [Source:MGI...	[more]
Srsf7	2.772e-11	37.68	serine/arginine-rich splicing factor 7 [Source:MGI...	[more]
Gm29289	4.720e-11	42.86	predicted gene 29289 [Source:MGI Symbol;Acc:MGI:55...	[more]
Srsf7	1.108e-10	37.68	serine/arginine-rich splicing factor 7 [Source:MGI...	[more]

BLAST of RRM domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5


Match Name	E-value	Identity	Description
sp\|Q24491\|RX21_DROME	1.941e-14	42.47	RNA-binding protein Rsf1 OS=Drosophila melanogaste...	[more]
sp\|Q02427\|RBP1_DROME	2.893e-12	36.71	RNA-binding protein 1 OS=Drosophila melanogaster O...	[more]
sp\|Q18409\|RSP6_CAEEL	4.511e-11	40.58	Probable splicing factor, arginine/serine-rich 6 O...	[more]
sp\|O81127\|RSZ21_ARATH	5.066e-11	44.29	Serine/arginine-rich splicing factor RSZ21 OS=Arab...	[more]
sp\|Q9SJA6\|RZ22A_ARATH	7.444e-11	40.00	Serine/arginine-rich splicing factor RSZ22A OS=Ara...	[more]

BLAST of RRM domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
Q5BTG2	1.824e-25	54.55	SJCHGC01414 protein (Fragment) OS=Schistosoma japo...	[more]
C1LI84	8.219e-25	56.63	RNA-binding protein 1 OS=Schistosoma japonicum OX=...	[more]
Q5DBQ6	1.423e-24	56.63	RRM domain-containing protein OS=Schistosoma japon...	[more]
A0A3Q0KHH7	1.881e-24	56.63	Putative arginine/serine-rich splicing factor OS=S...	[more]
A0A4Z2DH71	2.375e-24	56.63	RNA-binding protein OS=Schistosoma japonicum OX=61...	[more]

BLAST of RRM domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
ENSAMXT00000031432.1	3.210e-12	40.58	serine/arginine-rich splicing factor 7-like [Sourc...	[more]
srsf3b	7.637e-12	37.35	serine and arginine rich splicing factor 3 [Source...	[more]
srsf5b	1.915e-11	41.89	serine/arginine-rich splicing factor 5 [Source:NCB...	[more]
srsf3b	2.118e-11	37.35	serine and arginine rich splicing factor 3 [Source...	[more]
srsf5b	2.892e-11	41.89	serine/arginine-rich splicing factor 5 [Source:NCB...	[more]

BLAST of RRM domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 5


Match Name	E-value	Identity	Description
srsf3a	8.164e-14	39.44	serine and arginine rich splicing factor 3a [Sourc...	[more]
ENSPMAT00000006373.1	1.762e-13	38.03	pep scaffold:Pmarinus_7.0:GL478975:164155:166212:-...	[more]
SRSF5	2.548e-10	40.54	serine and arginine rich splicing factor 5 [Source...	[more]
ENSPMAT00000010377.1	6.119e-10	37.84	pep scaffold:Pmarinus_7.0:GL481287:28:8451:-1 gene...	[more]
srsf7a	2.124e-8	34.85	serine and arginine rich splicing factor 7a [Sourc...	[more]

BLAST of RRM domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of RRM domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 5


Match Name	E-value	Identity	Description
EDO31305	1.037e-19	49.33	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO31304	1.125e-16	46.67	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO30175	2.121e-12	36.99	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO30178	4.195e-12	37.68	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO47776	3.068e-8	39.74	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]

BLAST of RRM domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5


Match Name	E-value	Identity	Description
srsf7a	6.720e-12	40.58	serine/arginine-rich splicing factor 7 [Source:NCB...	[more]
srsf7a	1.847e-11	40.58	serine/arginine-rich splicing factor 7 [Source:NCB...	[more]
SRSF3	5.038e-11	39.13	serine/arginine-rich splicing factor 3 [Source:NCB...	[more]
SRSF3	7.109e-11	39.13	serine/arginine-rich splicing factor 3 [Source:NCB...	[more]
srsf3a	7.738e-11	39.13	serine and arginine rich splicing factor 3a [Sourc...	[more]

BLAST of RRM domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5


Match Name	E-value	Identity	Description
SMESG000039881.1	1.213e-130	99.40	SMESG000039881.1	[more]
SMESG000039881.1	2.564e-127	99.39	SMESG000039881.1	[more]
SMESG000006493.1	2.787e-12	37.18	SMESG000006493.1	[more]
SMESG000015564.1	2.182e-7	33.33	SMESG000015564.1	[more]
SMESG000077573.1	1.895e-6	34.25	SMESG000077573.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediteranean smed_20140614 Interproscan	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Sequences

The following sequences are available for this feature:

transcript sequence
protein sequence

transcript sequence

>SMED30013451 ID=SMED30013451|Name=RRM domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=1521bp
ATATTAGTAAATTTAAAATATTACAAATGGGGTCTCCTATGTATGACCCA
TTTCATAAAGGGTACAGAATTTTTATTGGTGGATTAAATCCAAAAGTTAC
AAAATATGACATTGAAAGAGAATTTGAGCGTTTTGGTAAAGTTACAGATG
TATGGGTAGCTAGAAGTCCTCCTGGATTTTCTTTTTTAATATTCAAACAC
GCTGGAGATGCAGAATATGCAGTTGCTAAAATGAATGATAGGAAATTTAT
GGGTGAAAGAATTAAAGTTGAACATGCCAGAAATCCTTCTAATCCAAAAT
CTCAAAGAGGGGGTCGAAGCAAGTCACGTGAATATAAAAGAAGTAGATCA
CGTGATAAGTATAGAAGCAGATCAGCTGGTAAGTATCGAAGCCGAAGTAG
GGATAAGCGTCGGAGATCTAGGCATCGGGATAAGTCTTCTGATGATCGGA
GATCAAAGCGTAGGAAGTCTAGATCAATAAGAAAAAATAGAAGCCGTTCA
ACTTCATTCCGCAAGAATCGAAGTCGGTCAGGAACTCCTAAAAAGTTTCA
TAGTACCTCTCTATCTGGTAAAAGAAATGTCAGTGGATCACGTTCAATTA
AAGATAAAAGTGCTTCGTCCTTTAAACGTGATAACAGTCGTTCTGTTTCA
GTTAAAAAAGATCGTAGTAGATCACTGAATAGAGAAATAATTAGTCGGAG
CCCGTCGGCTCATAAAGAACTGAGTGAATCGGGTTCTGAAAAAGATCGTT
GCAGGTCTACATCAAATCGAAGAAGCCATTCATCAAAATCAAGTTCTAGA
TCATCTGATCGCATTAATCGTACACAACAATCACGAAACGATTCGTTGGA
TAACGTAAATTATGACAGGTCGCTCTCAAAACATTCAAGTCGGAAAAGTT
CGTCTGGTTCCACTAGAATCAGGAGGCGTTCGAAATCATCTTCAGTTGAG
AGAAATGGAAATGACAGTCCTAGCAGTTTAGTAAACGGAAGCCGTTGCAG
ATCTAGCAGCGCTTGTGGTGAAGAAATATAATGATGATTGTAGTATATAT
GATTTTGAAATCTGGAGTTTTAGTGTACGTTTATTTATATTTGTAATTAA
ATAAATCTAACTTGTAACAAAATTATTATTGGTGTATCCGTTAAAATTAT
TGTAAATATTTGTGGATGTTTTAGATTTTCAGTTCTGTATTTTTTCAATT
TAAATGTTATGGATTATAATGCAATATGTTACTGAATTTATCACAAAAGT
ATCAAAGTTAATCTTGAAACTTCTATATTTTATATGTAATGTGCTTATTT
TTACTTTTGCGGTTATTATTAACTTTGATATTTTTCGATCACCTTGCAAA
TTCTTTAAGAAACTAGTTGGATTTTGATTCTTAATGTTTGCTGATTTTGA
TTACTTTTCGAATTTTGATGCTTATATTAGGATGTTTTGGTCGATTTTTA
ATTCTGCCGTTTATGAATCCATTAAAGCGTTACAGTTGCTGAGACTTCTT
GGATCGAGTACTTTTGTGTCC

protein sequence of SMED30013451-orf-1

>SMED30013451-orf-1 ID=SMED30013451-orf-1|Name=SMED30013451-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=343bp
ISKFKILQMGSPMYDPFHKGYRIFIGGLNPKVTKYDIEREFERFGKVTDV
WVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVEHARNPSNPKS
QRGGRSKSREYKRSRSRDKYRSRSAGKYRSRSRDKRRRSRHRDKSSDDRR
SKRRKSRSIRKNRSRSTSFRKNRSRSGTPKKFHSTSLSGKRNVSGSRSIK
DKSASSFKRDNSRSVSVKKDRSRSLNREIISRSPSAHKELSESGSEKDRC
RSTSNRRSHSSKSSSRSSDRINRTQQSRNDSLDNVNYDRSLSKHSSRKSS
SGSTRIRRRSKSSSVERNGNDSPSSLVNGSRCRSSSACGEEI*

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **molecular function**
Term	Definition
GO:0003723	RNA binding
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding

Vocabulary: **Planarian Anatomy**
Term	Definition
PLANA:0000429	neoblast
PLANA:0002109	X1 cell
PLANA:0002111	X2 cell

Vocabulary: **INTERPRO**
Term	Definition
IPR035979	RBD_domain_sf
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf

InterPro

Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 22..90 e-value: 9.2E-18 score: 75.0
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 23..88 e-value: 1.5E-12 score: 47.1
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 21..94 score: 16.074
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 17..95 e-value: 1.9E-19 score: 71.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 202..255
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 88..342
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 316..335
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 257..289
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 103..127
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 153..178
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 128..143
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 179..201
None	No IPR available	PANTHER	PTHR23147:SF45	RNA-BINDING PROTEIN RSF1	coord: 18..217
None	No IPR available	PANTHER	PTHR23147	SERINE/ARGININE RICH SPLICING FACTOR	coord: 18..217
None	No IPR available	CDD	cd12373	RRM_SRSF3_like	coord: 22..94 e-value: 3.37305E-27 score: 100.002
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	SSF54928	RNA-binding domain, RBD	coord: 18..118

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RRM domain-containing protein

Zeng et. al., 2018

▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Davies et. al., 2017

PAGE et. al., 2020

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 10

Owlery

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