RRM domain-containing protein

Overview
NameRRM domain-containing protein
Smed IDSMED30013451
Length (bp)1521
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of RRM domain-containing protein (SMED30013451) t-SNE clustered cells

Violin plots show distribution of expression levels for RRM domain-containing protein (SMED30013451) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of RRM domain-containing protein (SMED30013451) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for RRM domain-containing protein (SMED30013451) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020




SMED30013451

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 10

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30013451SMESG000039881.1 SmedASXL_012588SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015
FACS sorted cell population asexual adult RNA-sequencing evidence
X2 cellSMED30013451SMESG000039881.1 SmedASXL_012588SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015
FACS sorted cell population asexual adult RNA-sequencing evidence
nervous systemSMED30013451SMESG000039881.1 dd_Smed_v4_1631_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
gutSMED30013451SMESG000039881.1 dd_Smed_v4_1631_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30013451SMESG000039881.1 dd_Smed_v4_1631_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30013451SMESG000039881.1 dd_Smed_v4_1631_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30013451SMESG000039881.1 dd_Smed_v4_1631_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
muscle cellSMED30013451SMESG000039881.1 dd_Smed_v4_1631_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30013451SMESG000039881.1 Contig39369newmark_estsPMID:29674431
Fincher et al., 2018
FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30013451SMESG000039881.1 Contig39369uc_Smed_v2PMID:29674431
Fincher et al., 2018
FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
BLAST of RRM domain-containing protein vs. Ensembl Human
Match: SRSF3 (serine and arginine rich splicing factor 3 [Source:HGNC Symbol;Acc:HGNC:10785])

HSP 1 Score: 62.3882 bits (150), Expect = 2.722e-11
Identity = 27/69 (39.13%), Postives = 44/69 (63.77%), Query Frame = 3
Query:   66 RIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVE 272
            ++++G L     K ++ER F  +G +  VWVAR+PPGF+F+ F+   DA  AV +++ R   G R++VE
Sbjct:   11 KVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVE 79          
BLAST of RRM domain-containing protein vs. Ensembl Human
Match: SRSF3 (serine and arginine rich splicing factor 3 [Source:HGNC Symbol;Acc:HGNC:10785])

HSP 1 Score: 63.1586 bits (152), Expect = 3.894e-11
Identity = 27/69 (39.13%), Postives = 44/69 (63.77%), Query Frame = 3
Query:   66 RIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVE 272
            ++++G L     K ++ER F  +G +  VWVAR+PPGF+F+ F+   DA  AV +++ R   G R++VE
Sbjct:   11 KVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVE 79          
BLAST of RRM domain-containing protein vs. Ensembl Human
Match: SRSF3 (serine and arginine rich splicing factor 3 [Source:HGNC Symbol;Acc:HGNC:10785])

HSP 1 Score: 63.1586 bits (152), Expect = 3.894e-11
Identity = 27/69 (39.13%), Postives = 44/69 (63.77%), Query Frame = 3
Query:   66 RIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVE 272
            ++++G L     K ++ER F  +G +  VWVAR+PPGF+F+ F+   DA  AV +++ R   G R++VE
Sbjct:   11 KVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVE 79          
BLAST of RRM domain-containing protein vs. Ensembl Human
Match: SRSF7 (serine and arginine rich splicing factor 7 [Source:HGNC Symbol;Acc:HGNC:10789])

HSP 1 Score: 62.3882 bits (150), Expect = 4.038e-11
Identity = 26/69 (37.68%), Postives = 44/69 (63.77%), Query Frame = 3
Query:   66 RIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVE 272
            ++++G L     K ++ER F  +G +  VW+AR+PPGF+F+ F+   DAE AV  ++ +   G R++VE
Sbjct:   12 KVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVE 80          
BLAST of RRM domain-containing protein vs. Ensembl Human
Match: SRSF7 (serine and arginine rich splicing factor 7 [Source:HGNC Symbol;Acc:HGNC:10789])

HSP 1 Score: 62.3882 bits (150), Expect = 4.038e-11
Identity = 26/69 (37.68%), Postives = 44/69 (63.77%), Query Frame = 3
Query:   66 RIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVE 272
            ++++G L     K ++ER F  +G +  VW+AR+PPGF+F+ F+   DAE AV  ++ +   G R++VE
Sbjct:   12 KVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVE 80          
BLAST of RRM domain-containing protein vs. Ensembl Celegans
Match: rsp-6 (Probable splicing factor, arginine/serine-rich 6 [Source:UniProtKB/Swiss-Prot;Acc:Q18409])

HSP 1 Score: 65.0846 bits (157), Expect = 3.546e-12
Identity = 28/69 (40.58%), Postives = 44/69 (63.77%), Query Frame = 3
Query:   66 RIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVE 272
            ++++GGL    T  ++E  F+RFG++  VWVAR PPGF+F+ +    DAE AV  ++  +  G R +VE
Sbjct:    4 KVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDGSRICGVRARVE 72          
BLAST of RRM domain-containing protein vs. Ensembl Celegans
Match: Y57G11A.5 (pep chromosome:WBcel235:IV:14511884:14512505:-1 gene:WBGene00013293.1 transcript:Y57G11A.5.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Y57G11A.5)

HSP 1 Score: 49.2914 bits (116), Expect = 2.871e-7
Identity = 23/71 (32.39%), Postives = 38/71 (53.52%), Query Frame = 3
Query:   66 RIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVEHA 278
            ++++G +    T+ +IE  F   G +  +W+A+ PPGF+F+ FK    A  AV  +N +K      KVE  
Sbjct:   18 QVYVGNMPFDATEKEIEAVFSVMGPIKSIWMAKRPPGFAFVTFKRTVHAFDAVKYLNGKKICDLEAKVEMC 88          
BLAST of RRM domain-containing protein vs. Ensembl Celegans
Match: rsp-1 (Probable splicing factor, arginine/serine-rich 1 [Source:UniProtKB/Swiss-Prot;Acc:Q23121])

HSP 1 Score: 51.6026 bits (122), Expect = 6.536e-7
Identity = 26/72 (36.11%), Postives = 44/72 (61.11%), Query Frame = 3
Query:   66 RIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVEHAR 281
            RI+IG L  +V++ DIE  F  +G++ DV +     GF F+ F    DAE AV  +N ++  GER+ +++++
Sbjct:    4 RIYIGRLTSRVSEKDIEHFFRGYGQIRDVLLKN---GFGFVEFDDKRDAEDAVHDLNGKELGGERVILDYSK 72          
BLAST of RRM domain-containing protein vs. Ensembl Celegans
Match: rsp-1 (Probable splicing factor, arginine/serine-rich 1 [Source:UniProtKB/Swiss-Prot;Acc:Q23121])

HSP 1 Score: 48.9062 bits (115), Expect = 9.169e-7
Identity = 26/72 (36.11%), Postives = 44/72 (61.11%), Query Frame = 3
Query:   66 RIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVEHAR 281
            RI+IG L  +V++ DIE  F  +G++ DV +     GF F+ F    DAE AV  +N ++  GER+ +++++
Sbjct:    4 RIYIGRLTSRVSEKDIEHFFRGYGQIRDVLLKN---GFGFVEFDDKRDAEDAVHDLNGKELGGERVILDYSK 72          
BLAST of RRM domain-containing protein vs. Ensembl Celegans
Match: rsp-1 (Probable splicing factor, arginine/serine-rich 1 [Source:UniProtKB/Swiss-Prot;Acc:Q23121])

HSP 1 Score: 48.9062 bits (115), Expect = 9.169e-7
Identity = 26/72 (36.11%), Postives = 44/72 (61.11%), Query Frame = 3
Query:   66 RIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVEHAR 281
            RI+IG L  +V++ DIE  F  +G++ DV +     GF F+ F    DAE AV  +N ++  GER+ +++++
Sbjct:    4 RIYIGRLTSRVSEKDIEHFFRGYGQIRDVLLKN---GFGFVEFDDKRDAEDAVHDLNGKELGGERVILDYSK 72          
BLAST of RRM domain-containing protein vs. Ensembl Fly
Match: Rsf1 (gene:FBgn0011305 transcript:FBtr0333411)

HSP 1 Score: 75.485 bits (184), Expect = 1.782e-15
Identity = 31/73 (42.47%), Postives = 50/73 (68.49%), Query Frame = 3
Query:   54 HKGYRIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVE 272
             +G R+++G L  KV K D+E EF ++GK+  VW+A +PPGF+F+ F+H  DAE A   +N  + +G +++VE
Sbjct:    7 QRGTRVYVGNLTDKVKKDDLEGEFTKYGKLNSVWIAFNPPGFAFVEFEHRDDAEKACDILNGSELLGSQLRVE 79          
BLAST of RRM domain-containing protein vs. Ensembl Fly
Match: Rsf1 (gene:FBgn0011305 transcript:FBtr0080079)

HSP 1 Score: 75.485 bits (184), Expect = 1.782e-15
Identity = 31/73 (42.47%), Postives = 50/73 (68.49%), Query Frame = 3
Query:   54 HKGYRIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVE 272
             +G R+++G L  KV K D+E EF ++GK+  VW+A +PPGF+F+ F+H  DAE A   +N  + +G +++VE
Sbjct:    7 QRGTRVYVGNLTDKVKKDDLEGEFTKYGKLNSVWIAFNPPGFAFVEFEHRDDAEKACDILNGSELLGSQLRVE 79          
BLAST of RRM domain-containing protein vs. Ensembl Fly
Match: Rbp1-like (gene:FBgn0030479 transcript:FBtr0339838)

HSP 1 Score: 68.5514 bits (166), Expect = 1.967e-13
Identity = 30/79 (37.97%), Postives = 49/79 (62.03%), Query Frame = 3
Query:   36 PMYDPFHKGYRIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVE 272
            P Y  +    ++++G L    +KY+IE  F ++G + +VWVAR+PPGF+F+ F+   DAE A   ++  +  G RI+VE
Sbjct:    2 PRYREWDLACKVYVGNLGSSASKYEIENAFSKYGPLRNVWVARNPPGFAFVEFEDRRDAEDATRGLDGTRCCGTRIRVE 80          
BLAST of RRM domain-containing protein vs. Ensembl Fly
Match: Rbp1-like (gene:FBgn0030479 transcript:FBtr0073790)

HSP 1 Score: 68.5514 bits (166), Expect = 1.967e-13
Identity = 30/79 (37.97%), Postives = 49/79 (62.03%), Query Frame = 3
Query:   36 PMYDPFHKGYRIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVE 272
            P Y  +    ++++G L    +KY+IE  F ++G + +VWVAR+PPGF+F+ F+   DAE A   ++  +  G RI+VE
Sbjct:    2 PRYREWDLACKVYVGNLGSSASKYEIENAFSKYGPLRNVWVARNPPGFAFVEFEDRRDAEDATRGLDGTRCCGTRIRVE 80          
BLAST of RRM domain-containing protein vs. Ensembl Fly
Match: Rbp1 (gene:FBgn0260944 transcript:FBtr0082277)

HSP 1 Score: 67.781 bits (164), Expect = 2.886e-13
Identity = 29/79 (36.71%), Postives = 49/79 (62.03%), Query Frame = 3
Query:   36 PMYDPFHKGYRIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVE 272
            P Y  +    ++++G L    +K++IE  F ++G + +VWVAR+PPGF+F+ F+   DAE A   ++  +  G RI+VE
Sbjct:    2 PRYREWDLACKVYVGNLGSSASKHEIEGAFAKYGPLRNVWVARNPPGFAFVEFEDRRDAEDATRALDGTRCCGTRIRVE 80          
BLAST of RRM domain-containing protein vs. Ensembl Zebrafish
Match: srsf7a (serine and arginine rich splicing factor 7a [Source:ZFIN;Acc:ZDB-GENE-040426-1798])

HSP 1 Score: 67.3958 bits (163), Expect = 1.351e-12
Identity = 28/69 (40.58%), Postives = 45/69 (65.22%), Query Frame = 3
Query:   66 RIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVE 272
            ++++G L     K ++ER F  +G +  VWVAR+PPGF+F+ ++ A DAE AV  M+ +   G R++VE
Sbjct:   15 KVYVGDLGNGAAKGELERAFSYYGPLRSVWVARNPPGFAFVEYEDARDAEDAVKGMDGKVLCGARVRVE 83          
BLAST of RRM domain-containing protein vs. Ensembl Zebrafish
Match: srsf7a (serine and arginine rich splicing factor 7a [Source:ZFIN;Acc:ZDB-GENE-040426-1798])

HSP 1 Score: 66.6254 bits (161), Expect = 1.701e-12
Identity = 28/69 (40.58%), Postives = 45/69 (65.22%), Query Frame = 3
Query:   66 RIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVE 272
            ++++G L     K ++ER F  +G +  VWVAR+PPGF+F+ ++ A DAE AV  M+ +   G R++VE
Sbjct:   15 KVYVGDLGNGAAKGELERAFSYYGPLRSVWVARNPPGFAFVEYEDARDAEDAVKGMDGKVLCGARVRVE 83          
BLAST of RRM domain-containing protein vs. Ensembl Zebrafish
Match: srsf7a (serine and arginine rich splicing factor 7a [Source:ZFIN;Acc:ZDB-GENE-040426-1798])

HSP 1 Score: 68.1662 bits (165), Expect = 1.929e-12
Identity = 28/69 (40.58%), Postives = 45/69 (65.22%), Query Frame = 3
Query:   66 RIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVE 272
            ++++G L     K ++ER F  +G +  VWVAR+PPGF+F+ ++ A DAE AV  M+ +   G R++VE
Sbjct:   15 KVYVGDLGNGAAKGELERAFSYYGPLRSVWVARNPPGFAFVEYEDARDAEDAVKGMDGKVLCGARVRVE 83          
BLAST of RRM domain-containing protein vs. Ensembl Zebrafish
Match: srsf7a (serine and arginine rich splicing factor 7a [Source:ZFIN;Acc:ZDB-GENE-040426-1798])

HSP 1 Score: 68.1662 bits (165), Expect = 1.929e-12
Identity = 28/69 (40.58%), Postives = 45/69 (65.22%), Query Frame = 3
Query:   66 RIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVE 272
            ++++G L     K ++ER F  +G +  VWVAR+PPGF+F+ ++ A DAE AV  M+ +   G R++VE
Sbjct:   15 KVYVGDLGNGAAKGELERAFSYYGPLRSVWVARNPPGFAFVEYEDARDAEDAVKGMDGKVLCGARVRVE 83          
BLAST of RRM domain-containing protein vs. Ensembl Zebrafish
Match: srsf7a (serine and arginine rich splicing factor 7a [Source:ZFIN;Acc:ZDB-GENE-040426-1798])

HSP 1 Score: 68.1662 bits (165), Expect = 2.153e-12
Identity = 28/69 (40.58%), Postives = 45/69 (65.22%), Query Frame = 3
Query:   66 RIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVE 272
            ++++G L     K ++ER F  +G +  VWVAR+PPGF+F+ ++ A DAE AV  M+ +   G R++VE
Sbjct:   15 KVYVGDLGNGAAKGELERAFSYYGPLRSVWVARNPPGFAFVEYEDARDAEDAVKGMDGKVLCGARVRVE 83          
BLAST of RRM domain-containing protein vs. Ensembl Xenopus
Match: phex (phosphate regulating endopeptidase homolog X-linked [Source:Xenbase;Acc:XB-GENE-1012247])

HSP 1 Score: 63.1586 bits (152), Expect = 3.116e-11
Identity = 27/69 (39.13%), Postives = 44/69 (63.77%), Query Frame = 3
Query:   66 RIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVE 272
            ++++G L     K ++ER F  +G +  VWVAR+PPGF+F+ F+   DA  AV +++ R   G R++VE
Sbjct:   11 KVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVE 79          
BLAST of RRM domain-containing protein vs. Ensembl Xenopus
Match: grm6 (glutamate receptor, metabotropic 6 [Source:Xenbase;Acc:XB-GENE-949374])

HSP 1 Score: 67.3958 bits (163), Expect = 3.184e-11
Identity = 32/74 (43.24%), Postives = 49/74 (66.22%), Query Frame = 3
Query:   66 RIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVEHARNP 287
            R++IG L+ +  + D+ER F+ FGK+ +V +     G+ F+ F+ + DAE AV +MN R+  GER+ VEHAR P
Sbjct:    8 RVYIGRLSHRARERDVERFFKGFGKIVEVDL---KNGYGFVEFEDSRDAEDAVYEMNGRELCGERVIVEHARAP 78          
BLAST of RRM domain-containing protein vs. Ensembl Xenopus
Match: grm6 (glutamate receptor, metabotropic 6 [Source:Xenbase;Acc:XB-GENE-949374])

HSP 1 Score: 67.3958 bits (163), Expect = 3.216e-11
Identity = 32/74 (43.24%), Postives = 49/74 (66.22%), Query Frame = 3
Query:   66 RIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVEHARNP 287
            R++IG L+ +  + D+ER F+ FGK+ +V +     G+ F+ F+ + DAE AV +MN R+  GER+ VEHAR P
Sbjct:    8 RVYIGRLSHRARERDVERFFKGFGKIVEVDL---KNGYGFVEFEDSRDAEDAVYEMNGRELCGERVIVEHARAP 78          
BLAST of RRM domain-containing protein vs. Ensembl Xenopus
Match: phex (phosphate regulating endopeptidase homolog X-linked [Source:Xenbase;Acc:XB-GENE-1012247])

HSP 1 Score: 62.3882 bits (150), Expect = 3.639e-11
Identity = 27/69 (39.13%), Postives = 44/69 (63.77%), Query Frame = 3
Query:   66 RIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVE 272
            ++++G L     K ++ER F  +G +  VWVAR+PPGF+F+ F+   DA  AV +++ R   G R++VE
Sbjct:   11 KVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVE 79          
BLAST of RRM domain-containing protein vs. Ensembl Xenopus
Match: sms (spermine synthase [Source:Xenbase;Acc:XB-GENE-953534])

HSP 1 Score: 63.5438 bits (153), Expect = 7.208e-11
Identity = 26/69 (37.68%), Postives = 44/69 (63.77%), Query Frame = 3
Query:   66 RIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVE 272
            ++++G L     K ++ER F  +G +  VW+AR+PPGF+F+ F+   DAE AV  ++ +   G R++VE
Sbjct:   12 KVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDTRDAEDAVRGLDGKVICGSRVRVE 80          
BLAST of RRM domain-containing protein vs. Ensembl Mouse
Match: Srsf3 (serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285])

HSP 1 Score: 62.3882 bits (150), Expect = 1.869e-11
Identity = 27/69 (39.13%), Postives = 44/69 (63.77%), Query Frame = 3
Query:   66 RIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVE 272
            ++++G L     K ++ER F  +G +  VWVAR+PPGF+F+ F+   DA  AV +++ R   G R++VE
Sbjct:   11 KVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVE 79          
BLAST of RRM domain-containing protein vs. Ensembl Mouse
Match: Srsf3 (serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285])

HSP 1 Score: 63.1586 bits (152), Expect = 2.674e-11
Identity = 27/69 (39.13%), Postives = 44/69 (63.77%), Query Frame = 3
Query:   66 RIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVE 272
            ++++G L     K ++ER F  +G +  VWVAR+PPGF+F+ F+   DA  AV +++ R   G R++VE
Sbjct:   11 KVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVE 79          
BLAST of RRM domain-containing protein vs. Ensembl Mouse
Match: Srsf7 (serine/arginine-rich splicing factor 7 [Source:MGI Symbol;Acc:MGI:1926232])

HSP 1 Score: 62.3882 bits (150), Expect = 2.772e-11
Identity = 26/69 (37.68%), Postives = 44/69 (63.77%), Query Frame = 3
Query:   66 RIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVE 272
            ++++G L     K ++ER F  +G +  VW+AR+PPGF+F+ F+   DAE AV  ++ +   G R++VE
Sbjct:   12 KVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVE 80          
BLAST of RRM domain-containing protein vs. Ensembl Mouse
Match: Gm29289 (predicted gene 29289 [Source:MGI Symbol;Acc:MGI:5579995])

HSP 1 Score: 62.3882 bits (150), Expect = 4.720e-11
Identity = 36/84 (42.86%), Postives = 49/84 (58.33%), Query Frame = 3
Query:   66 RIFIGGLNPKVTKYDIEREFERFGKVTDVWVARS-----PPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVEHARNPSNPKS 302
            +IFIGGLN K  +  ++  F RFG V  V + R        GF+FL F+   DA+ AV +MN     G+RIKV+ AR PS+ +S
Sbjct:    9 KIFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAFLTFRRLADAKNAVKEMNGVILDGKRIKVKQARRPSSLES 92          
BLAST of RRM domain-containing protein vs. Ensembl Mouse
Match: Srsf7 (serine/arginine-rich splicing factor 7 [Source:MGI Symbol;Acc:MGI:1926232])

HSP 1 Score: 62.3882 bits (150), Expect = 1.108e-10
Identity = 26/69 (37.68%), Postives = 44/69 (63.77%), Query Frame = 3
Query:   66 RIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVE 272
            ++++G L     K ++ER F  +G +  VW+AR+PPGF+F+ F+   DAE AV  ++ +   G R++VE
Sbjct:   12 KVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVE 80          
BLAST of RRM domain-containing protein vs. UniProt/SwissProt
Match: sp|Q24491|RX21_DROME (RNA-binding protein Rsf1 OS=Drosophila melanogaster OX=7227 GN=Rsf1 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.941e-14
Identity = 31/73 (42.47%), Postives = 50/73 (68.49%), Query Frame = 3
Query:   54 HKGYRIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVE 272
             +G R+++G L  KV K D+E EF ++GK+  VW+A +PPGF+F+ F+H  DAE A   +N  + +G +++VE
Sbjct:    4 QRGTRVYVGNLTDKVKKDDLEGEFTKYGKLNSVWIAFNPPGFAFVEFEHRDDAEKACDILNGSELLGSQLRVE 76          
BLAST of RRM domain-containing protein vs. UniProt/SwissProt
Match: sp|Q02427|RBP1_DROME (RNA-binding protein 1 OS=Drosophila melanogaster OX=7227 GN=Rbp1 PE=2 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 2.893e-12
Identity = 29/79 (36.71%), Postives = 49/79 (62.03%), Query Frame = 3
Query:   36 PMYDPFHKGYRIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVE 272
            P Y  +    ++++G L    +K++IE  F ++G + +VWVAR+PPGF+F+ F+   DAE A   ++  +  G RI+VE
Sbjct:    2 PRYREWDLACKVYVGNLGSSASKHEIEGAFAKYGPLRNVWVARNPPGFAFVEFEDRRDAEDATRALDGTRCCGTRIRVE 80          
BLAST of RRM domain-containing protein vs. UniProt/SwissProt
Match: sp|Q18409|RSP6_CAEEL (Probable splicing factor, arginine/serine-rich 6 OS=Caenorhabditis elegans OX=6239 GN=rsp-6 PE=3 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 4.511e-11
Identity = 28/69 (40.58%), Postives = 44/69 (63.77%), Query Frame = 3
Query:   66 RIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVE 272
            ++++GGL    T  ++E  F+RFG++  VWVAR PPGF+F+ +    DAE AV  ++  +  G R +VE
Sbjct:    4 KVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDGSRICGVRARVE 72          
BLAST of RRM domain-containing protein vs. UniProt/SwissProt
Match: sp|O81127|RSZ21_ARATH (Serine/arginine-rich splicing factor RSZ21 OS=Arabidopsis thaliana OX=3702 GN=RSZ21 PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 5.066e-11
Identity = 31/70 (44.29%), Postives = 50/70 (71.43%), Query Frame = 3
Query:   66 RIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVEH 275
            R+++G L+P+VT+ ++E EF+ FG + +VWVAR PPG++FL F    DA  A++ + DRK  G R+++ H
Sbjct:    3 RVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISAL-DRK-NGWRVELSH 70          
BLAST of RRM domain-containing protein vs. UniProt/SwissProt
Match: sp|Q9SJA6|RZ22A_ARATH (Serine/arginine-rich splicing factor RSZ22A OS=Arabidopsis thaliana OX=3702 GN=RSZ22A PE=1 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 7.444e-11
Identity = 28/70 (40.00%), Postives = 48/70 (68.57%), Query Frame = 3
Query:   66 RIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVEH 275
            R+++G L+P+VT+ ++E EF  FG +  VWVAR PPG++FL F+ + DA  A+ +++ +   G R++  H
Sbjct:    3 RVYVGNLDPRVTERELEDEFRSFGVIRSVWVARRPPGYAFLDFEDSRDARDAIREVDGKN--GWRVEQSH 70          
BLAST of RRM domain-containing protein vs. TrEMBL
Match: Q5BTG2 (SJCHGC01414 protein (Fragment) OS=Schistosoma japonicum OX=6182 PE=2 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 1.824e-25
Identity = 48/88 (54.55%), Postives = 67/88 (76.14%), Query Frame = 3
Query:   21 LQMGSPMYDPFHKGYRIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVEHARN 284
            L +  P YD    GYR+F+GG++P+V K DIE+EFERFG + DVWVAR+PPGF+F++FK+A DA+ AV +M+  +  G R++VEHA N
Sbjct:    4 LLVSMPKYDRQANGYRVFVGGVDPRVGKVDIEQEFERFGPIADVWVARNPPGFAFIVFKYAEDADRAVRRMDGSRPFGSRLRVEHAVN 91          
BLAST of RRM domain-containing protein vs. TrEMBL
Match: C1LI84 (RNA-binding protein 1 OS=Schistosoma japonicum OX=6182 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 8.219e-25
Identity = 47/83 (56.63%), Postives = 65/83 (78.31%), Query Frame = 3
Query:   36 PMYDPFHKGYRIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVEHARN 284
            P YD    GYR+F+GG++P+V K DIE+EFERFG + DVWVAR+PPGF+F++FK+A DA+ AV +M+  +  G R++VEHA N
Sbjct:    2 PKYDRQANGYRVFVGGVDPRVGKVDIEQEFERFGPIADVWVARNPPGFAFIVFKYAEDADRAVRRMDGSRPFGSRLRVEHAVN 84          
BLAST of RRM domain-containing protein vs. TrEMBL
Match: Q5DBQ6 (RRM domain-containing protein OS=Schistosoma japonicum OX=6182 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.423e-24
Identity = 47/83 (56.63%), Postives = 65/83 (78.31%), Query Frame = 3
Query:   36 PMYDPFHKGYRIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVEHARN 284
            P YD    GYR+F+GG++P+V K DIE+EFERFG + DVWVAR+PPGF+F++FK+A DA+ AV +M+  +  G R++VEHA N
Sbjct:    2 PKYDRQANGYRVFVGGVDPRVGKVDIEQEFERFGPIADVWVARNPPGFAFIVFKYAEDADRAVRRMDGSRPFGSRLRVEHAVN 84          
BLAST of RRM domain-containing protein vs. TrEMBL
Match: A0A3Q0KHH7 (Putative arginine/serine-rich splicing factor OS=Schistosoma mansoni OX=6183 PE=4 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.881e-24
Identity = 47/83 (56.63%), Postives = 65/83 (78.31%), Query Frame = 3
Query:   36 PMYDPFHKGYRIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVEHARN 284
            P YD    GYR+F+GG++P+V K DIE+EFERFG + DVWVAR+PPGF+F++FK+A DA+ AV +M+  +  G R++VEHA N
Sbjct:    2 PKYDRQANGYRVFVGGVDPRVGKVDIEQEFERFGPIADVWVARNPPGFAFIVFKYAEDADRAVRRMDGSRPFGSRLRVEHAVN 84          
BLAST of RRM domain-containing protein vs. TrEMBL
Match: A0A4Z2DH71 (RNA-binding protein OS=Schistosoma japonicum OX=6182 GN=EWB00_001055 PE=4 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 2.375e-24
Identity = 47/83 (56.63%), Postives = 65/83 (78.31%), Query Frame = 3
Query:   36 PMYDPFHKGYRIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVEHARN 284
            P YD    GYR+F+GG++P+V K DIE+EFERFG + DVWVAR+PPGF+F++FK+A DA+ AV +M+  +  G R++VEHA N
Sbjct:    2 PKYDRQANGYRVFVGGVDPRVGKVDIEQEFERFGPIADVWVARNPPGFAFIVFKYAEDADRAVRRMDGSRPFGSRLRVEHAVN 84          
BLAST of RRM domain-containing protein vs. Ensembl Cavefish
Match: ENSAMXT00000031432.1 (serine/arginine-rich splicing factor 7-like [Source:NCBI gene;Acc:103041487])

HSP 1 Score: 67.3958 bits (163), Expect = 3.210e-12
Identity = 28/69 (40.58%), Postives = 45/69 (65.22%), Query Frame = 3
Query:   66 RIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVE 272
            ++++G L     K ++ER F  +G +  VWVAR+PPGF+F+ ++ A DAE +V  M+ +   G RI+VE
Sbjct:   19 KVYVGDLGSGAAKAELERAFSYYGPLRSVWVARNPPGFAFVEYEDARDAEDSVKGMDGKVLCGSRIRVE 87          
BLAST of RRM domain-containing protein vs. Ensembl Cavefish
Match: srsf3b (serine and arginine rich splicing factor 3 [Source:NCBI gene;Acc:103046708])

HSP 1 Score: 64.3142 bits (155), Expect = 7.637e-12
Identity = 31/83 (37.35%), Postives = 49/83 (59.04%), Query Frame = 3
Query:   27 MGSP-MYDPFHKGYRIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVE 272
            MG P M+       ++++G L     K ++ER F  +G +  VWVAR+PPGF+F+ F+   DA  AV +++ R   G R++VE
Sbjct:    1 MGDPSMHRDCPLDCKVYVGNLGNNGNKSELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDATDAVRELDGRNLCGCRVRVE 83          
BLAST of RRM domain-containing protein vs. Ensembl Cavefish
Match: srsf5b (serine/arginine-rich splicing factor 5 [Source:NCBI gene;Acc:103029514])

HSP 1 Score: 62.7734 bits (151), Expect = 1.915e-11
Identity = 31/74 (41.89%), Postives = 47/74 (63.51%), Query Frame = 3
Query:   60 GYRIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVEHAR 281
            G RIFIG LNP   + D+ER F+ +G++ D+ + R   GF F+ F    DAE AV +++ ++   ER+ +EHAR
Sbjct:    3 GCRIFIGRLNPSAREKDVERFFKGYGRIRDIDLKR---GFGFVEFDDPRDAEDAVYELDGKELCNERVTIEHAR 73          
BLAST of RRM domain-containing protein vs. Ensembl Cavefish
Match: srsf3b (serine and arginine rich splicing factor 3 [Source:NCBI gene;Acc:103046708])

HSP 1 Score: 63.1586 bits (152), Expect = 2.118e-11
Identity = 31/83 (37.35%), Postives = 49/83 (59.04%), Query Frame = 3
Query:   27 MGSP-MYDPFHKGYRIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVE 272
            MG P M+       ++++G L     K ++ER F  +G +  VWVAR+PPGF+F+ F+   DA  AV +++ R   G R++VE
Sbjct:    1 MGDPSMHRDCPLDCKVYVGNLGNNGNKSELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDATDAVRELDGRNLCGCRVRVE 83          
BLAST of RRM domain-containing protein vs. Ensembl Cavefish
Match: srsf5b (serine/arginine-rich splicing factor 5 [Source:NCBI gene;Acc:103029514])

HSP 1 Score: 64.6994 bits (156), Expect = 2.892e-11
Identity = 31/74 (41.89%), Postives = 47/74 (63.51%), Query Frame = 3
Query:   60 GYRIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVEHAR 281
            G RIFIG LNP   + D+ER F+ +G++ D+ + R   GF F+ F    DAE AV +++ ++   ER+ +EHAR
Sbjct:    3 GCRIFIGRLNPSAREKDVERFFKGYGRIRDIDLKR---GFGFVEFDDPRDAEDAVYELDGKELCNERVTIEHAR 73          
BLAST of RRM domain-containing protein vs. Ensembl Sea Lamprey
Match: srsf3a (serine and arginine rich splicing factor 3a [Source:ZFIN;Acc:ZDB-GENE-030616-631])

HSP 1 Score: 68.1662 bits (165), Expect = 8.164e-14
Identity = 28/71 (39.44%), Postives = 46/71 (64.79%), Query Frame = 3
Query:   66 RIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVEHA 278
            ++++G L     K ++ER F  +G +  VWVAR+PPGF+F+ F+   DA  AV +++ R   G R++VEH+
Sbjct:   16 KVYVGNLGNNGNKAELERSFSYYGPLRSVWVARAPPGFAFVEFEDPRDAGDAVRELDGRTLCGSRVRVEHS 86          
BLAST of RRM domain-containing protein vs. Ensembl Sea Lamprey
Match: ENSPMAT00000006373.1 (pep scaffold:Pmarinus_7.0:GL478975:164155:166212:-1 gene:ENSPMAG00000005755.1 transcript:ENSPMAT00000006373.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 69.3218 bits (168), Expect = 1.762e-13
Identity = 27/71 (38.03%), Postives = 47/71 (66.20%), Query Frame = 3
Query:   66 RIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVEHA 278
            ++++G L    T+YD+E+ F  +G +  VWVAR+PPGF+F+ F+ A DA  +  +++ R   G R++VE +
Sbjct:   16 KVYVGNLGSGATEYDLEKVFSYYGPLRSVWVARNPPGFAFVQFEDARDARDSCRELDGRLVCGSRVRVEMS 86          
BLAST of RRM domain-containing protein vs. Ensembl Sea Lamprey
Match: SRSF5 (serine and arginine rich splicing factor 5 [Source:HGNC Symbol;Acc:HGNC:10787])

HSP 1 Score: 60.077 bits (144), Expect = 2.548e-10
Identity = 30/74 (40.54%), Postives = 44/74 (59.46%), Query Frame = 3
Query:   66 RIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVEHARNP 287
            R+FI  L P V   D+E+ F+ +GK+ D+ +     GF F+ F    DA+ AV+ +N R+   ER+ VEHAR P
Sbjct:    6 RVFIARLGPHVRTKDVEKFFKGYGKIRDIDIK---AGFGFVEFDDCRDADDAVSDLNGRELNNERMTVEHARAP 76          
BLAST of RRM domain-containing protein vs. Ensembl Sea Lamprey
Match: ENSPMAT00000010377.1 (pep scaffold:Pmarinus_7.0:GL481287:28:8451:-1 gene:ENSPMAG00000009397.1 transcript:ENSPMAT00000010377.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 58.5362 bits (140), Expect = 6.119e-10
Identity = 28/74 (37.84%), Postives = 45/74 (60.81%), Query Frame = 3
Query:   66 RIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVEHARNP 287
            RI++G L+ +    DIER F+ +GK+ ++ +     GF F+ F    DA  AV +++ R+  GER+ +EHAR P
Sbjct:    3 RIYLGNLSYRARDKDIERFFKGYGKIVEISIKH---GFGFVEFDDTRDANDAVCELSGRELCGERVVIEHARGP 73          
BLAST of RRM domain-containing protein vs. Ensembl Sea Lamprey
Match: srsf7a (serine and arginine rich splicing factor 7a [Source:ZFIN;Acc:ZDB-GENE-040426-1798])

HSP 1 Score: 53.1434 bits (126), Expect = 2.124e-8
Identity = 23/66 (34.85%), Postives = 39/66 (59.09%), Query Frame = 3
Query:   75 IGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVE 272
            +G L  +  K ++ + F  +G + +VWVAR+PP  +F+ ++   DAE AV  ++ R   G R+ VE
Sbjct:    1 VGNLGTRAAKGELWQAFGYYGALRNVWVARNPPAVAFVEYEDTRDAEDAVRGLDGRLLCGSRVSVE 66          
BLAST of RRM domain-containing protein vs. Ensembl Nematostella
Match: EDO31305 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SYA8])

HSP 1 Score: 84.7297 bits (208), Expect = 1.037e-19
Identity = 37/75 (49.33%), Postives = 53/75 (70.67%), Query Frame = 3
Query:   66 RIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVEHARNPS 290
            R++IG +    +K +IEREFE FG + DVWVAR+PPGF+F +F+   DAE AV +++ R   G+R +VE A+ PS
Sbjct:    3 RVYIGNIGDNASKREIEREFETFGPLRDVWVARNPPGFAFCVFEDRRDAEDAVRELDGRYICGQRARVELAKGPS 77          
BLAST of RRM domain-containing protein vs. Ensembl Nematostella
Match: EDO31304 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SYA7])

HSP 1 Score: 74.3294 bits (181), Expect = 1.125e-16
Identity = 35/75 (46.67%), Postives = 51/75 (68.00%), Query Frame = 3
Query:   66 RIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVEHARNPS 290
            +++IG L    +K +IE EF  +G + DVWVAR+PPGF+F IF    DAE AV +++ R   G+R++VE A+ PS
Sbjct:    3 KVYIGSLGDNASKREIENEFGYYGPLKDVWVARNPPGFAFCIFDDRRDAEDAVRELDGRYICGQRVRVELAKGPS 77          
BLAST of RRM domain-containing protein vs. Ensembl Nematostella
Match: EDO30175 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7T1I7])

HSP 1 Score: 62.7734 bits (151), Expect = 2.121e-12
Identity = 27/73 (36.99%), Postives = 47/73 (64.38%), Query Frame = 3
Query:   66 RIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVEHARN 284
            ++++G L       ++ER FE+FG+++ VWVAR+PPGF+F+ ++   DAE AV +++        I+VE + N
Sbjct:    4 KLYVGNLGRNADSSELERAFEKFGRLSKVWVARNPPGFAFVEYEDYRDAEEAVRELDGANVCDRTIRVEFSNN 76          
BLAST of RRM domain-containing protein vs. Ensembl Nematostella
Match: EDO30178 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7T1I6])

HSP 1 Score: 62.3882 bits (150), Expect = 4.195e-12
Identity = 26/69 (37.68%), Postives = 47/69 (68.12%), Query Frame = 3
Query:   66 RIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVE 272
            ++++G L  +  ++++   F+ +G++ DVWVAR+PPGF+F+ F  A DA  AV  ++  +  G+R+KVE
Sbjct:    5 KVWVGNLGKEGDRHELWEAFKSYGELRDVWVARNPPGFAFVEFYDARDARDAVDALDGERICGQRVKVE 73          
BLAST of RRM domain-containing protein vs. Ensembl Nematostella
Match: EDO47776 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RL13])

HSP 1 Score: 53.1434 bits (126), Expect = 3.068e-8
Identity = 31/78 (39.74%), Postives = 53/78 (67.95%), Query Frame = 3
Query:   57 KGYRIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVEHARNPS 290
            +G R+F+G L P+    D+E+ F+ FG++ D+ + +   GF+F+ F  A DA+ AV ++N ++ +GER+ VEHA +PS
Sbjct:    4 EGGRVFVGRLPPRANDRDLEKFFKGFGRINDINLKQ---GFAFVEFDDARDADDAVYELNHKELLGERVSVEHA-HPS 77          
BLAST of RRM domain-containing protein vs. Ensembl Medaka
Match: srsf7a (serine/arginine-rich splicing factor 7 [Source:NCBI gene;Acc:101155211])

HSP 1 Score: 66.2402 bits (160), Expect = 6.720e-12
Identity = 28/69 (40.58%), Postives = 44/69 (63.77%), Query Frame = 3
Query:   66 RIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVE 272
            ++++G L     K ++ER F  +G +  VWVAR+PPGF+F+ F+   DAE AV  M+ +   G R++VE
Sbjct:   17 KVYVGDLGNGAAKGELERAFSYYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVKGMDGKLLCGSRVRVE 85          
BLAST of RRM domain-containing protein vs. Ensembl Medaka
Match: srsf7a (serine/arginine-rich splicing factor 7 [Source:NCBI gene;Acc:101155211])

HSP 1 Score: 65.4698 bits (158), Expect = 1.847e-11
Identity = 28/69 (40.58%), Postives = 44/69 (63.77%), Query Frame = 3
Query:   66 RIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVE 272
            ++++G L     K ++ER F  +G +  VWVAR+PPGF+F+ F+   DAE AV  M+ +   G R++VE
Sbjct:   17 KVYVGDLGNGAAKGELERAFSYYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVKGMDGKLLCGSRVRVE 85          
BLAST of RRM domain-containing protein vs. Ensembl Medaka
Match: SRSF3 (serine/arginine-rich splicing factor 3 [Source:NCBI gene;Acc:101168533])

HSP 1 Score: 63.5438 bits (153), Expect = 5.038e-11
Identity = 27/69 (39.13%), Postives = 44/69 (63.77%), Query Frame = 3
Query:   66 RIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVE 272
            ++++G L     K ++ER F  +G +  VWVAR+PPGF+F+ F+   DA  AV +++ R   G R++VE
Sbjct:   76 KVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDATDAVRELDGRTLCGCRVRVE 144          
BLAST of RRM domain-containing protein vs. Ensembl Medaka
Match: SRSF3 (serine/arginine-rich splicing factor 3 [Source:NCBI gene;Acc:101168533])

HSP 1 Score: 62.7734 bits (151), Expect = 7.109e-11
Identity = 27/69 (39.13%), Postives = 44/69 (63.77%), Query Frame = 3
Query:   66 RIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVE 272
            ++++G L     K ++ER F  +G +  VWVAR+PPGF+F+ F+   DA  AV +++ R   G R++VE
Sbjct:   76 KVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDATDAVRELDGRTLCGCRVRVE 144          
BLAST of RRM domain-containing protein vs. Ensembl Medaka
Match: srsf3a (serine and arginine rich splicing factor 3a [Source:ZFIN;Acc:ZDB-GENE-030616-631])

HSP 1 Score: 61.6178 bits (148), Expect = 7.738e-11
Identity = 27/69 (39.13%), Postives = 44/69 (63.77%), Query Frame = 3
Query:   66 RIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVE 272
            ++++G L     K ++ER F  +G +  VWVAR+PPGF+F+ F+   DA  AV +++ R   G R++VE
Sbjct:   13 KVYVGNLGNNGNKTELERAFGYYGPLRTVWVARNPPGFAFVEFEDPRDASDAVRELDGRTMCGCRVRVE 81          
BLAST of RRM domain-containing protein vs. Planmine SMEST
Match: SMESG000039881.1 (SMESG000039881.1)

HSP 1 Score: 383.259 bits (983), Expect = 1.213e-130
Identity = 332/334 (99.40%), Postives = 333/334 (99.70%), Query Frame = 3
Query:   27 MGSPMYDPFHKGYRIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVEHARNPSNPKSQXXXXXXXXXXXXXXXXXXXXXXXAGKYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSFRKNRSRSGTPKKFHSTSLSGKRNVSGSRSIKDKSASSFKRDNXXXXXXXXXXXXXLNREIISRSPSAHKELSESGSEKDXXXXXXXXXXXXXXXXXXXXXXINRTQQSRNDSLDNVNYDXXXXXXXXXXXXXXXXXXXXXXXXXXVERNGNDSPSSLVNGSRCRSSSACGEEI 1028
            MGSPMYDPFHKGYRIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVEHARNPSNPKSQRGGRSKSREYKRSRSRDKYRSRSAGKYRSRS+DKRRRSRHRDKSSDDRRSKRRKSRSIRKNRSRSTSFRKNRSRS TPKKFHSTSLSGKRNVSGSRSIKDKSASSFKRDNSRSVSVKKDRSRSLNREIISRSPSAHKELSESGSEKDRCRSTSNRRSHSSKSSSRSSDRINRTQQSRNDSLDNVNYDRSLSKHSSRKSSSGSTRIRRRSKSSSVERNGNDSPSSLVNGSRCRSSSACGEEI
Sbjct:    1 MGSPMYDPFHKGYRIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVEHARNPSNPKSQRGGRSKSREYKRSRSRDKYRSRSAGKYRSRSKDKRRRSRHRDKSSDDRRSKRRKSRSIRKNRSRSTSFRKNRSRSATPKKFHSTSLSGKRNVSGSRSIKDKSASSFKRDNSRSVSVKKDRSRSLNREIISRSPSAHKELSESGSEKDRCRSTSNRRSHSSKSSSRSSDRINRTQQSRNDSLDNVNYDRSLSKHSSRKSSSGSTRIRRRSKSSSVERNGNDSPSSLVNGSRCRSSSACGEEI 334          
BLAST of RRM domain-containing protein vs. Planmine SMEST
Match: SMESG000039881.1 (SMESG000039881.1)

HSP 1 Score: 374.4 bits (960), Expect = 2.564e-127
Identity = 328/330 (99.39%), Postives = 329/330 (99.70%), Query Frame = 3
Query:   39 MYDPFHKGYRIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVEHARNPSNPKSQXXXXXXXXXXXXXXXXXXXXXXXAGKYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSFRKNRSRSGTPKKFHSTSLSGKRNVSGSRSIKDKSASSFKRDNXXXXXXXXXXXXXLNREIISRSPSAHKELSESGSEKDXXXXXXXXXXXXXXXXXXXXXXINRTQQSRNDSLDNVNYDXXXXXXXXXXXXXXXXXXXXXXXXXXVERNGNDSPSSLVNGSRCRSSSACGEEI 1028
            MYDPFHKGYRIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVEHARNPSNPKSQRGGRSKSREYKRSRSRDKYRSRSAGKYRSRS+DKRRRSRHRDKSSDDRRSKRRKSRSIRKNRSRSTSFRKNRSRS TPKKFHSTSLSGKRNVSGSRSIKDKSASSFKRDNSRSVSVKKDRSRSLNREIISRSPSAHKELSESGSEKDRCRSTSNRRSHSSKSSSRSSDRINRTQQSRNDSLDNVNYDRSLSKHSSRKSSSGSTRIRRRSKSSSVERNGNDSPSSLVNGSRCRSSSACGEEI
Sbjct:    1 MYDPFHKGYRIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVEHARNPSNPKSQRGGRSKSREYKRSRSRDKYRSRSAGKYRSRSKDKRRRSRHRDKSSDDRRSKRRKSRSIRKNRSRSTSFRKNRSRSATPKKFHSTSLSGKRNVSGSRSIKDKSASSFKRDNSRSVSVKKDRSRSLNREIISRSPSAHKELSESGSEKDRCRSTSNRRSHSSKSSSRSSDRINRTQQSRNDSLDNVNYDRSLSKHSSRKSSSGSTRIRRRSKSSSVERNGNDSPSSLVNGSRCRSSSACGEEI 330          
BLAST of RRM domain-containing protein vs. Planmine SMEST
Match: SMESG000006493.1 (SMESG000006493.1)

HSP 1 Score: 64.3142 bits (155), Expect = 2.787e-12
Identity = 29/78 (37.18%), Postives = 48/78 (61.54%), Query Frame = 3
Query:   66 RIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVEHARNPSNPK 299
            ++++G L     + +IE+ F+ FG +  VWVAR+P GF+F++F    DAE AV +++     G R++VE +   S PK
Sbjct:    9 KVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSRPK 86          
BLAST of RRM domain-containing protein vs. Planmine SMEST
Match: SMESG000015564.1 (SMESG000015564.1)

HSP 1 Score: 53.1434 bits (126), Expect = 2.182e-7
Identity = 24/72 (33.33%), Postives = 46/72 (63.89%), Query Frame = 3
Query:   66 RIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVEHAR 281
            R+FIG L+ + ++ D+ER F+ +G++ D+   R   G+ F+ F +  DA+ A+  ++ ++  G R+ +EHAR
Sbjct:    3 RVFIGRLSDRASERDVERFFKGYGRIKDI---RLKSGYGFVEFDNERDADDAIHDLHHKELAGGRVVLEHAR 71          
BLAST of RRM domain-containing protein vs. Planmine SMEST
Match: SMESG000077573.1 (SMESG000077573.1)

HSP 1 Score: 49.6766 bits (117), Expect = 1.895e-6
Identity = 25/73 (34.25%), Postives = 41/73 (56.16%), Query Frame = 3
Query:   66 RIFIGGLNPKVTKYDIEREFERFGKVTDVWVA-RSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVEHAR 281
            ++++G L P +   D++  F +FGK+ D+ +  R  P F+F+ F    DAE AV   N   + G R++VE  R
Sbjct:   11 KLYVGNLPPDIRHRDLDDLFYKFGKIVDIDIKDRKKPPFAFIEFDDPRDAEDAVTGRNGYNYDGYRLRVEFPR 83          
The following BLAST results are available for this feature:
BLAST of RRM domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5
Match NameE-valueIdentityDescription
SRSF32.722e-1139.13serine and arginine rich splicing factor 3 [Source... [more]
SRSF33.894e-1139.13serine and arginine rich splicing factor 3 [Source... [more]
SRSF33.894e-1139.13serine and arginine rich splicing factor 3 [Source... [more]
SRSF74.038e-1137.68serine and arginine rich splicing factor 7 [Source... [more]
SRSF74.038e-1137.68serine and arginine rich splicing factor 7 [Source... [more]
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BLAST of RRM domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 5
Match NameE-valueIdentityDescription
rsp-63.546e-1240.58Probable splicing factor, arginine/serine-rich 6 ... [more]
Y57G11A.52.871e-732.39pep chromosome:WBcel235:IV:14511884:14512505:-1 ge... [more]
rsp-16.536e-736.11Probable splicing factor, arginine/serine-rich 1 ... [more]
rsp-19.169e-736.11Probable splicing factor, arginine/serine-rich 1 ... [more]
rsp-19.169e-736.11Probable splicing factor, arginine/serine-rich 1 ... [more]
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BLAST of RRM domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 5
Match NameE-valueIdentityDescription
Rsf11.782e-1542.47gene:FBgn0011305 transcript:FBtr0333411[more]
Rsf11.782e-1542.47gene:FBgn0011305 transcript:FBtr0080079[more]
Rbp1-like1.967e-1337.97gene:FBgn0030479 transcript:FBtr0339838[more]
Rbp1-like1.967e-1337.97gene:FBgn0030479 transcript:FBtr0073790[more]
Rbp12.886e-1336.71gene:FBgn0260944 transcript:FBtr0082277[more]
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BLAST of RRM domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
srsf7a1.351e-1240.58serine and arginine rich splicing factor 7a [Sourc... [more]
srsf7a1.701e-1240.58serine and arginine rich splicing factor 7a [Sourc... [more]
srsf7a1.929e-1240.58serine and arginine rich splicing factor 7a [Sourc... [more]
srsf7a1.929e-1240.58serine and arginine rich splicing factor 7a [Sourc... [more]
srsf7a2.153e-1240.58serine and arginine rich splicing factor 7a [Sourc... [more]
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BLAST of RRM domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5
Match NameE-valueIdentityDescription
phex3.116e-1139.13phosphate regulating endopeptidase homolog X-linke... [more]
grm63.184e-1143.24glutamate receptor, metabotropic 6 [Source:Xenbase... [more]
grm63.216e-1143.24glutamate receptor, metabotropic 6 [Source:Xenbase... [more]
phex3.639e-1139.13phosphate regulating endopeptidase homolog X-linke... [more]
sms7.208e-1137.68spermine synthase [Source:Xenbase;Acc:XB-GENE-9535... [more]
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BLAST of RRM domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5
Match NameE-valueIdentityDescription
Srsf31.869e-1139.13serine/arginine-rich splicing factor 3 [Source:MGI... [more]
Srsf32.674e-1139.13serine/arginine-rich splicing factor 3 [Source:MGI... [more]
Srsf72.772e-1137.68serine/arginine-rich splicing factor 7 [Source:MGI... [more]
Gm292894.720e-1142.86predicted gene 29289 [Source:MGI Symbol;Acc:MGI:55... [more]
Srsf71.108e-1037.68serine/arginine-rich splicing factor 7 [Source:MGI... [more]
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BLAST of RRM domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|Q24491|RX21_DROME1.941e-1442.47RNA-binding protein Rsf1 OS=Drosophila melanogaste... [more]
sp|Q02427|RBP1_DROME2.893e-1236.71RNA-binding protein 1 OS=Drosophila melanogaster O... [more]
sp|Q18409|RSP6_CAEEL4.511e-1140.58Probable splicing factor, arginine/serine-rich 6 O... [more]
sp|O81127|RSZ21_ARATH5.066e-1144.29Serine/arginine-rich splicing factor RSZ21 OS=Arab... [more]
sp|Q9SJA6|RZ22A_ARATH7.444e-1140.00Serine/arginine-rich splicing factor RSZ22A OS=Ara... [more]
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BLAST of RRM domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
Q5BTG21.824e-2554.55SJCHGC01414 protein (Fragment) OS=Schistosoma japo... [more]
C1LI848.219e-2556.63RNA-binding protein 1 OS=Schistosoma japonicum OX=... [more]
Q5DBQ61.423e-2456.63RRM domain-containing protein OS=Schistosoma japon... [more]
A0A3Q0KHH71.881e-2456.63Putative arginine/serine-rich splicing factor OS=S... [more]
A0A4Z2DH712.375e-2456.63RNA-binding protein OS=Schistosoma japonicum OX=61... [more]
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BLAST of RRM domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
ENSAMXT00000031432.13.210e-1240.58serine/arginine-rich splicing factor 7-like [Sourc... [more]
srsf3b7.637e-1237.35serine and arginine rich splicing factor 3 [Source... [more]
srsf5b1.915e-1141.89serine/arginine-rich splicing factor 5 [Source:NCB... [more]
srsf3b2.118e-1137.35serine and arginine rich splicing factor 3 [Source... [more]
srsf5b2.892e-1141.89serine/arginine-rich splicing factor 5 [Source:NCB... [more]
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BLAST of RRM domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 5
Match NameE-valueIdentityDescription
srsf3a8.164e-1439.44serine and arginine rich splicing factor 3a [Sourc... [more]
ENSPMAT00000006373.11.762e-1338.03pep scaffold:Pmarinus_7.0:GL478975:164155:166212:-... [more]
SRSF52.548e-1040.54serine and arginine rich splicing factor 5 [Source... [more]
ENSPMAT00000010377.16.119e-1037.84pep scaffold:Pmarinus_7.0:GL481287:28:8451:-1 gene... [more]
srsf7a2.124e-834.85serine and arginine rich splicing factor 7a [Sourc... [more]
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BLAST of RRM domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of RRM domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 5
Match NameE-valueIdentityDescription
EDO313051.037e-1949.33Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO313041.125e-1646.67Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO301752.121e-1236.99Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO301784.195e-1237.68Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO477763.068e-839.74Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of RRM domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5
Match NameE-valueIdentityDescription
srsf7a6.720e-1240.58serine/arginine-rich splicing factor 7 [Source:NCB... [more]
srsf7a1.847e-1140.58serine/arginine-rich splicing factor 7 [Source:NCB... [more]
SRSF35.038e-1139.13serine/arginine-rich splicing factor 3 [Source:NCB... [more]
SRSF37.109e-1139.13serine/arginine-rich splicing factor 3 [Source:NCB... [more]
srsf3a7.738e-1139.13serine and arginine rich splicing factor 3a [Sourc... [more]
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BLAST of RRM domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000039881.11.213e-13099.40SMESG000039881.1[more]
SMESG000039881.12.564e-12799.39SMESG000039881.1[more]
SMESG000006493.12.787e-1237.18SMESG000006493.1[more]
SMESG000015564.12.182e-733.33SMESG000015564.1[more]
SMESG000077573.11.895e-634.25SMESG000077573.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30013451 ID=SMED30013451|Name=RRM domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=1521bp
ATATTAGTAAATTTAAAATATTACAAATGGGGTCTCCTATGTATGACCCA
TTTCATAAAGGGTACAGAATTTTTATTGGTGGATTAAATCCAAAAGTTAC
AAAATATGACATTGAAAGAGAATTTGAGCGTTTTGGTAAAGTTACAGATG
TATGGGTAGCTAGAAGTCCTCCTGGATTTTCTTTTTTAATATTCAAACAC
GCTGGAGATGCAGAATATGCAGTTGCTAAAATGAATGATAGGAAATTTAT
GGGTGAAAGAATTAAAGTTGAACATGCCAGAAATCCTTCTAATCCAAAAT
CTCAAAGAGGGGGTCGAAGCAAGTCACGTGAATATAAAAGAAGTAGATCA
CGTGATAAGTATAGAAGCAGATCAGCTGGTAAGTATCGAAGCCGAAGTAG
GGATAAGCGTCGGAGATCTAGGCATCGGGATAAGTCTTCTGATGATCGGA
GATCAAAGCGTAGGAAGTCTAGATCAATAAGAAAAAATAGAAGCCGTTCA
ACTTCATTCCGCAAGAATCGAAGTCGGTCAGGAACTCCTAAAAAGTTTCA
TAGTACCTCTCTATCTGGTAAAAGAAATGTCAGTGGATCACGTTCAATTA
AAGATAAAAGTGCTTCGTCCTTTAAACGTGATAACAGTCGTTCTGTTTCA
GTTAAAAAAGATCGTAGTAGATCACTGAATAGAGAAATAATTAGTCGGAG
CCCGTCGGCTCATAAAGAACTGAGTGAATCGGGTTCTGAAAAAGATCGTT
GCAGGTCTACATCAAATCGAAGAAGCCATTCATCAAAATCAAGTTCTAGA
TCATCTGATCGCATTAATCGTACACAACAATCACGAAACGATTCGTTGGA
TAACGTAAATTATGACAGGTCGCTCTCAAAACATTCAAGTCGGAAAAGTT
CGTCTGGTTCCACTAGAATCAGGAGGCGTTCGAAATCATCTTCAGTTGAG
AGAAATGGAAATGACAGTCCTAGCAGTTTAGTAAACGGAAGCCGTTGCAG
ATCTAGCAGCGCTTGTGGTGAAGAAATATAATGATGATTGTAGTATATAT
GATTTTGAAATCTGGAGTTTTAGTGTACGTTTATTTATATTTGTAATTAA
ATAAATCTAACTTGTAACAAAATTATTATTGGTGTATCCGTTAAAATTAT
TGTAAATATTTGTGGATGTTTTAGATTTTCAGTTCTGTATTTTTTCAATT
TAAATGTTATGGATTATAATGCAATATGTTACTGAATTTATCACAAAAGT
ATCAAAGTTAATCTTGAAACTTCTATATTTTATATGTAATGTGCTTATTT
TTACTTTTGCGGTTATTATTAACTTTGATATTTTTCGATCACCTTGCAAA
TTCTTTAAGAAACTAGTTGGATTTTGATTCTTAATGTTTGCTGATTTTGA
TTACTTTTCGAATTTTGATGCTTATATTAGGATGTTTTGGTCGATTTTTA
ATTCTGCCGTTTATGAATCCATTAAAGCGTTACAGTTGCTGAGACTTCTT
GGATCGAGTACTTTTGTGTCC
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protein sequence of SMED30013451-orf-1

>SMED30013451-orf-1 ID=SMED30013451-orf-1|Name=SMED30013451-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=343bp
ISKFKILQMGSPMYDPFHKGYRIFIGGLNPKVTKYDIEREFERFGKVTDV
WVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVEHARNPSNPKS
QRGGRSKSREYKRSRSRDKYRSRSAGKYRSRSRDKRRRSRHRDKSSDDRR
SKRRKSRSIRKNRSRSTSFRKNRSRSGTPKKFHSTSLSGKRNVSGSRSIK
DKSASSFKRDNSRSVSVKKDRSRSLNREIISRSPSAHKELSESGSEKDRC
RSTSNRRSHSSKSSSRSSDRINRTQQSRNDSLDNVNYDRSLSKHSSRKSS
SGSTRIRRRSKSSSVERNGNDSPSSLVNGSRCRSSSACGEEI*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: molecular function
TermDefinition
GO:0003723RNA binding
GO:0003676nucleic acid binding
GO:0000166nucleotide binding
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000429neoblast
PLANA:0002109X1 cell
PLANA:0002111X2 cell
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 22..90
e-value: 9.2E-18
score: 75.0
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 23..88
e-value: 1.5E-12
score: 47.1
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 21..94
score: 16.074
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3DG3DSA:3.30.70.330coord: 17..95
e-value: 1.9E-19
score: 71.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 202..255
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 88..342
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 316..335
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 257..289
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 103..127
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 153..178
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 128..143
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 179..201
NoneNo IPR availablePANTHERPTHR23147:SF45RNA-BINDING PROTEIN RSF1coord: 18..217
NoneNo IPR availablePANTHERPTHR23147SERINE/ARGININE RICH SPLICING FACTORcoord: 18..217
NoneNo IPR availableCDDcd12373RRM_SRSF3_likecoord: 22..94
e-value: 3.37305E-27
score: 100.002
IPR035979RNA-binding domain superfamilySUPERFAMILYSSF54928RNA-binding domain, RBDcoord: 18..118