Sarcoplasmic calcium-binding protein

Overview
NameSarcoplasmic calcium-binding protein
Smed IDSMED30013408
Length (bp)1550
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Sarcoplasmic calcium-binding protein (SMED30013408) t-SNE clustered cells

Violin plots show distribution of expression levels for Sarcoplasmic calcium-binding protein (SMED30013408) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Sarcoplasmic calcium-binding protein (SMED30013408) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Sarcoplasmic calcium-binding protein (SMED30013408) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30013408

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 5

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
cephalic gangliaSMED30013408h1SMcG0015115 dd_Smed_v4_1010_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
muscle cellSMED30013408h1SMcG0015115 dd_Smed_v4_1010_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
musculature systemSMED30013408h1SMcG0015115 dd_Smed_v6_1010_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
reproductive organSMED30013408h1SMcG0003872 Contig2691GPL15192PMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite RNA-sequencing evidence
reproductive organSMED30013408h1SMcG0015115 Contig2691GPL15192PMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of Sarcoplasmic calcium-binding protein vs. Ensembl Fly
Match: CBP (gene:FBgn0026144 transcript:FBtr0071053)

HSP 1 Score: 51.2174 bits (121), Expect = 5.438e-7
Identity = 53/193 (27.46%), Postives = 94/193 (48.70%), Query Frame = 3 
Query:  810 VNYKRPEDYGDSEFGPYWEGKMRTMFRRFDVDNASKLKCHDFIQIARNIAHRGRLDKKRANVVLRAMLDVWVKWIALDKEGRHLAEVTEKEFIHNLRALLNGD-YRHEIDQFGWTFFKSMESENSGFVTLQEYRNLQEAWGIGREEAEAMFXXXXXXXXXXXSSDEYLTGWVDYFLGDDTKSPYRGFFGPVIA 1385
            ++ KR E  GDS F   W  KMRT+ R  DV++   +   DF  +A+  +  G L  + A      +   W +      E      VT ++F+ +L   LN       I +F    FK+++ +++G + L++Y+      G+  ++A   F V+D + DG+LS  E++     +FL +D     + F+GP++A
Sbjct:   44 MDSKRSE-RGDSAF---WRRKMRTLHRILDVNHDGVVSFDDFSLLAKRFSDLGHLTPEVAAEFNDVIKHTWEEQFG---EITPYNLVTAEQFLTDLHHRLNDKKMAKRIGRFLPYLFKAVDFDHTGHLDLEQYKLFFRCLGLTEDDAAVSFAVIDKNGDGQLSLKEFVHLGRQFFLTEDDSKISKMFWGPLVA 229
[Close]
BLAST of Sarcoplasmic calcium-binding protein vs. Ensembl Fly
Match: CBP (gene:FBgn0026144 transcript:FBtr0071052)

HSP 1 Score: 51.6026 bits (122), Expect = 7.203e-7
Identity = 53/193 (27.46%), Postives = 94/193 (48.70%), Query Frame = 3 
Query:  810 VNYKRPEDYGDSEFGPYWEGKMRTMFRRFDVDNASKLKCHDFIQIARNIAHRGRLDKKRANVVLRAMLDVWVKWIALDKEGRHLAEVTEKEFIHNLRALLN-GDYRHEIDQFGWTFFKSMESENSGFVTLQEYRNLQEAWGIGREEAEAMFXXXXXXXXXXXSSDEYLTGWVDYFLGDDTKSPYRGFFGPVIA 1385
            ++ KR E  GDS F   W  KMRT+ R  DV++   +   DF  +A+  +  G L  + A      +   W +      E      VT ++F+ +L   LN       I +F    FK+++ +++G + L++Y+      G+  ++A   F V+D + DG+LS  E++     +FL +D     + F+GP++A
Sbjct:  111 MDSKRSE-RGDSAF---WRRKMRTLHRILDVNHDGVVSFDDFSLLAKRFSDLGHLTPEVAAEFNDVIKHTWEEQFG---EITPYNLVTAEQFLTDLHHRLNDKKMAKRIGRFLPYLFKAVDFDHTGHLDLEQYKLFFRCLGLTEDDAAVSFAVIDKNGDGQLSLKEFVHLGRQFFLTEDDSKISKMFWGPLVA 296
[Close]
BLAST of Sarcoplasmic calcium-binding protein vs. Ensembl Fly
Match: CBP (gene:FBgn0026144 transcript:FBtr0329894)

HSP 1 Score: 51.6026 bits (122), Expect = 1.355e-6
Identity = 50/184 (27.17%), Postives = 89/184 (48.37%), Query Frame = 3 
Query:  837 GDSEFGPYWEGKMRTMFRRFDVDNASKLKCHDFIQIARNIAHRGRLDKKRANVVLRAMLDVWVKWIALDKEGRHLAEVTEKEFIHNLRALLN-GDYRHEIDQFGWTFFKSMESENSGFVTLQEYRNLQEAWGIGREEAEAMFXXXXXXXXXXXSSDEYLTGWVDYFLGDDTKSPYRGFFGPVIA 1385
            GDS F   W  KMRT+ R  DV++   +   DF  +A+  +  G L  + A      +   W +      E      VT ++F+ +L   LN       I +F    FK+++ +++G + L++Y+      G+  ++A   F V+D + DG+LS  E++     +FL +D     + F+GP++A
Sbjct:  119 GDSAF---WRRKMRTLHRILDVNHDGVVSFDDFSLLAKRFSDLGHLTPEVAAEFNDVIKHTWEEQFG---EITPYNLVTAEQFLTDLHHRLNDKKMAKRIGRFLPYLFKAVDFDHTGHLDLEQYKLFFRCLGLTEDDAAVSFAVIDKNGDGQLSLKEFVHLGRQFFLTEDDSKISKMFWGPLVA 296
[Close]
BLAST of Sarcoplasmic calcium-binding protein vs. UniProt/SwissProt
Match: sp|P04572|SCP_PERVT (Sarcoplasmic calcium-binding protein OS=Perinereis vancaurica tetradentata OX=6357 PE=1 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 1.599e-10
Identity = 48/180 (26.67%), Postives = 86/180 (47.78%), Query Frame = 3 
Query:  861 WEGKMRTMFRRFDVDNASKLKCHDFIQIARNIAHRGRLDKKRANVVLRAMLDVWVKWIALDKEGRHLAEVT------EKEFIHNLRALLNGDYRHEIDQFGWTFFKSMESENSGFVTLQEYRNLQEAWGIGREEAEAMFXXXXXXXXXXXSSDEYLTGWVDYFLGDDTKSPYRGFFGPVI 1382
            W  KM+T F R D D    +   DF  +A   A    +  + A V++ ++  VW K++A    G+ + + T      EK    N +A++ G            FF+++++     ++  EY       G+  + A A F  +D + DG LS +E++T   D+F+ +D  SP + F+GP++
Sbjct:    4 WVQKMKTYFNRIDFDKDGAITRKDFESMATRFAKESEMKPEHAKVLMDSLTGVWDKFLANVAGGKGIDQATFISSMKEKVKDPNAKAVVEGPLP--------LFFRAVDTNEDNMISRDEYGIFFNMLGLNPDMAPASFDAIDTNNDGLLSQEEFVTAGSDFFI-NDQDSPNKVFWGPLV 174
[Close]
BLAST of Sarcoplasmic calcium-binding protein vs. UniProt/SwissProt
Match: sp|P04571|SCP_HEDDI (Sarcoplasmic calcium-binding protein OS=Hediste diversicolor OX=126592 PE=1 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 2.752e-8
Identity = 43/175 (24.57%), Postives = 87/175 (49.71%), Query Frame = 3 
Query:  861 WEGKMRTMFRRFDVDNASKLKCHDFIQIARNIAHRGRLDKKRANVVLRAMLDVWVKWIALDKEGRHLAEVTEKEFIHNLRALL-NGDYRHEIDQFGWTFFKSMESENSGFVTLQEYRNLQEAWGIGREEAEAMFXXXXXXXXXXXSSDEYLTGWVDYFLGDDTKSPYRGFFGPVI 1382
            W  KM+T F R D D    +   DF  +A   A    +  + A V++ ++  VW  ++     G+ + E T   FI++++ ++ N + +  ++     FF+++++     ++  EY       G+ +  A A F  +D + DG LS +E++    D+F+ +D  S  + F+GP++
Sbjct:    4 WVQKMKTYFNRIDFDKDGAITRMDFESMAERFAKESEMKAEHAKVLMDSLTGVWDNFLTAVAGGKGIDETT---FINSMKEMVKNPEAKSVVEGPLPLFFRAVDTNEDNNISRDEYGIFFGMLGLDKTMAPASFDAIDTNNDGLLSLEEFVIAGSDFFM-NDGDSTNKVFWGPLV 174
[Close]
BLAST of Sarcoplasmic calcium-binding protein vs. TrEMBL
Match: A0A0X3PDS8 (Sarcoplasmic calcium-binding protein OS=Schistocephalus solidus OX=70667 GN=SCP PE=4 SV=1)

HSP 1 Score: 408.297 bits (1048), Expect = 6.582e-136
Identity = 204/388 (52.58%), Postives = 284/388 (73.20%), Query Frame = 3 
Query:  231 KKPEEYNELTGDPFWTRKMRTLFRRLDSRGHGFVNLADILNVATDVISSFTNTDTYKGDQIVNAAINLWYGVLATHVEEKDRTSVIANEANFVGNLQKGCNKNGELRTKFNEILIEPFFVAADEDDDGKITVVQFKCLLKAWKSPDTSLETIFRLADP--EKTGKINKLQXXXXXXXXXXXXXTKSSVATLFGRLVNYKRPEDYGDSEFGPYWEGKMRTMFRRFDVDNASKLKCHDFIQIARNIAHRGRLDKKRANVVLRAMLDVWVKWIALDKEGRHLAEVTEKEFIHNLRALLNGDYRHEIDQFGWTFFKSMESENSGFVTLQEYRNLQEAWGIGREEAEAMFXXXXXXXXXXXSSDEYLTGWVDYFLGDDTKSPYRGFFGPVIAK 1388
            K    Y E+TG P W RKMRT+FRRLDS GHG+V ++D L++A+ ++++F+  D +  DQ+V   ++LWYGV+ T  EE  RT+   NEA FV +++K  N     + +F  I+++ FF  AD D DG I + +F+ +++AW+      E +FRL D   +K GKI K Q+E +++E+FF E  K   A L+G L+NYKRPEDY + E GP WEGKMRTMFRR D++ A KL+CHDFIQI R++A R  L K +A+ ++R+MLD+WV + ++DK+  H  E+TEK+FIHNLR+++NGD+RH+IDQFGWTFFK+++ E +G++++ EYRNLQEAW +GR EAE MFKVLD DKDGK+SSDEYL+ WV+YFLG+D  SPY+ FFGPVI K
Sbjct:    4 KPAASYPEVTGHPGWIRKMRTVFRRLDSNGHGYVCVSDFLDIASRILTTFSKCDHFFEDQVVQNMVHLWYGVICTIGEEHTRTNAQLNEAMFVDSMRKCIN--AAFKEEFKSIMVDTFFDLADTDHDGLIQMNEFEGIIEAWRGNPKEAELVFRLVDSAGDKKGKITKEQYEGVIAEYFFDEDIKGKTAKLWGALINYKRPEDYPECECGPTWEGKMRTMFRRLDINQAGKLRCHDFIQIGRSLAQRNHLVKHKADALMRSMLDIWVHYFSVDKDANHFTELTEKQFIHNLRSMINGDFRHQIDQFGWTFFKAVDIEGTGYISMTEYRNLQEAWRVGRGEAEGMFKVLDTDKDGKISSDEYLSAWVEYFLGEDNNSPYKTFFGPVIFK 389

HSP 2 Score: 77.0258 bits (188), Expect = 2.055e-11
Identity = 57/219 (26.03%), Postives = 106/219 (48.40%), Query Frame = 3 
Query:  171 TVIRKFINLSLKGKEI-----MVDSKKPEEYNELTGDPFWTRKMRTLFRRLDSRGHGFVNLADILNVATDVISSFTNTDTYKGDQIVNAAINLWYGVLATHVEEKDRTSVIANEANFVGNLQKGCNKNGELRTKFNEILIEPFFVAADEDDDGKITVVQFKCLLKAWKSPDTSLETIFRLADPEKTGKINKLQXXXXXXXXXXXXXTKSSVATLFGRLV 812
             +   F +  +KGK       +++ K+PE+Y E    P W  KMRT+FRRLD    G +   D + +    ++   +   +K D ++ + +++W    +   +    T +   E  F+ NL+     NG+ R + ++     FF A D +  G I++ +++ L +AW+      E +F++ D +K GKI+  ++ S   E+F  E   S   T FG ++
Sbjct:  175 VIAEYFFDEDIKGKTAKLWGALINYKRPEDYPECECGPTWEGKMRTMFRRLDINQAGKLRCHDFIQIGRS-LAQRNHLVKHKADALMRSMLDIWVHYFSVDKDANHFTEL--TEKQFIHNLRSMI--NGDFRHQIDQFGW-TFFKAVDIEGTGYISMTEYRNLQEAWRVGRGEAEGMFKVLDTDKDGKISSDEYLSAWVEYFLGEDNNSPYKTFFGPVI 387

HSP 3 Score: 67.3958 bits (163), Expect = 2.982e-8
Identity = 53/197 (26.90%), Postives = 98/197 (49.75%), Query Frame = 3 
Query:  810 VNYKRPEDYGDSEFGPYWEGKMRTMFRRFDVDNASKLKCHDFIQIA-RNIAHRGRLDKKRANVVLRAMLDVWVKWIAL--DKEGRHLAEVTEKEFIHNLRALLNGDYRHEIDQFGW-TFFKSMESENSGFVTLQEYRNLQEAWGIGREEAEAMFXXXXXX--XXXXXSSDEYLTGWVDYFLGDDTKSPYRGFFGPVI 1382
            +N+K    Y +    P W  KMRT+FRR D +    +   DF+ IA R +    + D    + V++ M+ +W   I    ++  R  A++ E  F+ ++R  +N  ++ E       TFF   ++++ G + + E+  + EAW    +EAE +F+++D    K GK++ ++Y     +YF  +D K      +G +I
Sbjct:    1 MNFKPAASYPEVTGHPGWIRKMRTVFRRLDSNGHGYVCVSDFLDIASRILTTFSKCDHFFEDQVVQNMVHLWYGVICTIGEEHTRTNAQLNEAMFVDSMRKCINAAFKEEFKSIMVDTFFDLADTDHDGLIQMNEFEGIIEAWRGNPKEAELVFRLVDSAGDKKGKITKEQYEGVIAEYFFDEDIKGKTAKLWGALI 197
[Close]
BLAST of Sarcoplasmic calcium-binding protein vs. TrEMBL
Match: A0A0X3NXZ0 (Sarcoplasmic calcium-binding protein OS=Schistocephalus solidus OX=70667 GN=SCP PE=4 SV=1)

HSP 1 Score: 401.364 bits (1030), Expect = 4.044e-133
Identity = 204/395 (51.65%), Postives = 284/395 (71.90%), Query Frame = 3 
Query:  231 KKPEEYNELTGDPFWTRKMRTLFRRLDSRGHGFVNLADILNVATDVISSFTNTDTYKGDQIVNAAINLWYGVLATHVEEKDRTSVIANEANFVGNLQKGCNKNGELRTKFNEILIEPFFVAADEDDDGKITVVQFKCLLKAWKSPDTSLETIFRLADP--EKTGKINKLQXXXXXXXXXXXXXTKSSVATLFGRLVNYKRPEDYGDSEFGPYWEGKMRTMFRRFDVDNASKLKCHDFIQIARNIAHRGRLDKKRANVVLRAMLDVWVKWIALDKEG-------RHLAEVTEKEFIHNLRALLNGDYRHEIDQFGWTFFKSMESENSGFVTLQEYRNLQEAWGIGREEAEAMFXXXXXXXXXXXSSDEYLTGWVDYFLGDDTKSPYRGFFGPVIAK 1388
            K    Y E+TG P W RKMRT+FRRLDS GHG+V ++D L++A+ ++++F+  D +  DQ+V   ++LWYGV+ T  EE  RT+   NEA FV +++K  N     + +F  I+++ FF  AD D DG I + +F+ +++AW+      E +FRL D   +K GKI K Q+E +++E+FF E  K   A L+G L+NYKRPEDY + E GP WEGKMRTMFRR D++ A KL+CHDFIQI R++A R  L K +A+ ++R+MLD+WV + ++DK+         H  E+TEK+FIHNLR+++NGD+RH+IDQFGWTFFK+++ E +G++++ EYRNLQEAW +GR EAE MFKVLD DKDGK+SSDEYL+ WV+YFLG+D  SPY+ FFGPVI K
Sbjct:    4 KPAASYPEVTGHPGWIRKMRTVFRRLDSNGHGYVCVSDFLDIASRILTTFSKCDHFFEDQVVQNMVHLWYGVICTIGEEHTRTNAQLNEAMFVDSMRKCIN--AAFKEEFKSIMVDTFFDLADTDHDGLIQMNEFEGIIEAWRGNPKEAELVFRLVDSAGDKKGKITKEQYEGVIAEYFFDEDIKGKTAKLWGALINYKRPEDYPECECGPTWEGKMRTMFRRLDINQAGKLRCHDFIQIGRSLAQRNHLVKHKADALMRSMLDIWVHYFSVDKDAFEKGETANHFTELTEKQFIHNLRSMINGDFRHQIDQFGWTFFKAVDIEGTGYISMTEYRNLQEAWRVGRGEAEGMFKVLDTDKDGKISSDEYLSAWVEYFLGEDNNSPYKTFFGPVIFK 396

HSP 2 Score: 75.0998 bits (183), Expect = 9.384e-11
Identity = 60/224 (26.79%), Postives = 108/224 (48.21%), Query Frame = 3 
Query:  171 TVIRKFINLSLKGKEI-----MVDSKKPEEYNELTGDPFWTRKMRTLFRRLDSRGHGFVNLADILNVATDVISSFTNTDTYKGDQIVNAAINLW--YGVLATHVEEKDRTS---VIANEANFVGNLQKGCNKNGELRTKFNEILIEPFFVAADEDDDGKITVVQFKCLLKAWKSPDTSLETIFRLADPEKTGKINKLQXXXXXXXXXXXXXTKSSVATLFGRLV 812
             +   F +  +KGK       +++ K+PE+Y E    P W  KMRT+FRRLD    G +   D + +    ++   +   +K D ++ + +++W  Y  +     EK  T+       E  F+ NL+     NG+ R + ++     FF A D +  G I++ +++ L +AW+      E +F++ D +K GKI+  ++ S   E+F  E   S   T FG ++
Sbjct:  175 VIAEYFFDEDIKGKTAKLWGALINYKRPEDYPECECGPTWEGKMRTMFRRLDINQAGKLRCHDFIQIGRS-LAQRNHLVKHKADALMRSMLDIWVHYFSVDKDAFEKGETANHFTELTEKQFIHNLRSMI--NGDFRHQIDQFGW-TFFKAVDIEGTGYISMTEYRNLQEAWRVGRGEAEGMFKVLDTDKDGKISSDEYLSAWVEYFLGEDNNSPYKTFFGPVI 394

HSP 3 Score: 67.0106 bits (162), Expect = 3.392e-8
Identity = 53/197 (26.90%), Postives = 98/197 (49.75%), Query Frame = 3 
Query:  810 VNYKRPEDYGDSEFGPYWEGKMRTMFRRFDVDNASKLKCHDFIQIA-RNIAHRGRLDKKRANVVLRAMLDVWVKWIAL--DKEGRHLAEVTEKEFIHNLRALLNGDYRHEIDQFGW-TFFKSMESENSGFVTLQEYRNLQEAWGIGREEAEAMFXXXXXX--XXXXXSSDEYLTGWVDYFLGDDTKSPYRGFFGPVI 1382
            +N+K    Y +    P W  KMRT+FRR D +    +   DF+ IA R +    + D    + V++ M+ +W   I    ++  R  A++ E  F+ ++R  +N  ++ E       TFF   ++++ G + + E+  + EAW    +EAE +F+++D    K GK++ ++Y     +YF  +D K      +G +I
Sbjct:    1 MNFKPAASYPEVTGHPGWIRKMRTVFRRLDSNGHGYVCVSDFLDIASRILTTFSKCDHFFEDQVVQNMVHLWYGVICTIGEEHTRTNAQLNEAMFVDSMRKCINAAFKEEFKSIMVDTFFDLADTDHDGLIQMNEFEGIIEAWRGNPKEAELVFRLVDSAGDKKGKITKEQYEGVIAEYFFDEDIKGKTAKLWGALI 197
[Close]
BLAST of Sarcoplasmic calcium-binding protein vs. TrEMBL
Match: A0A0R3T804 (Uncharacterized protein OS=Rodentolepis nana OX=102285 GN=HNAJ_LOCUS3191 PE=4 SV=1)

HSP 1 Score: 391.349 bits (1004), Expect = 2.606e-129
Identity = 200/390 (51.28%), Postives = 268/390 (68.72%), Query Frame = 3 
Query:  222 VDSKKPEEYNEL-TGDPFWTRKMRTLFRRLDSRGHGFVNLADILNVATDVISSFTNTDTYKGDQIVNAAINLWYGVLATHVEEKDRTSVIANEANFVGNLQKGCNKNGELRTKFNEILIEPFFVAADEDDDGKITVVQFKCLLKAWKSPDTSLETIFRLADPEKTGKINKLQXXXXXXXXXXXXXTKSSVATLFGRLVNYKRPEDYGDSEFGPYWEGKMRTMFRRFDVDNASKLKCHDFIQIARNIAHRGRLDKKRANVVLRAMLDVWVKWIALDKEGRHLAEVTEKEFIHNLRALLNGDYRHEIDQFGWTFFKSMESENSGFVTLQEYRNLQEAWGIGREEAEAMFXXXXXXXXXXXSSDEYLTGWVDYFLGDDTKSPYRGFFGPVIAK 1388
            ++ KK  +Y  + T  P W RKMRT+FRR DS G G V + + L++AT V+S F  +D Y  D +V + I+LWYG++ T   E  RT++  NE +FV  + K  N  G  + +F E L+ P F  AD D DG +   +   ++  +       E +FRL DP     + K QFES+++E+FF    K   A LFG L+NYKRPEDY + E GP WEGKMRTMFRR D+  A K++CHDFIQI R +A R  L K +A+ +LRAMLD+WV + ++DKEG H  E++EK+FIHNLR+++NG++RH ID+FGWTFFK++E E +GF++L EYRNLQEAW +GR EAE MFKVLD DKDGK+SSDEYL+ W DYFLG+D  SPY+ FFGPV++K
Sbjct:    1 MELKKLADYPAVDTASPTWIRKMRTIFRRFDSHGRGVVGIDEFLDIATSVLSEFPKSDQYFSDLLVQSMIHLWYGIICTEGPEHTRTTITMNENSFVQAMAKCIN--GTFKAEFTENLVTPLFGMADGDKDGFMQQHEMGQVIVGFGGNQKEAELLFRLLDPSAKKGVTKEQFESVLAEYFFDVGIKGKTAKLFGALINYKRPEDYPECECGPVWEGKMRTMFRRLDLHGAGKIRCHDFIQIGRALAQRNHLPKHKADNILRAMLDIWVHYFSVDKEGSHFTEISEKDFIHNLRSMINGEFRHAIDRFGWTFFKAVEVEGTGFISLAEYRNLQEAWHVGRAEAEGMFKVLDTDKDGKISSDEYLSAWCDYFLGEDPASPYKAFFGPVVSK 388

HSP 2 Score: 85.8853 bits (211), Expect = 2.788e-14
Identity = 61/224 (27.23%), Postives = 109/224 (48.66%), Query Frame = 3 
Query:  186 FINLSLKGKEI-----MVDSKKPEEYNELTGDPFWTRKMRTLFRRLDSRGHGFVNLADILNVATDVISSFTNTDTYKGDQIVNAAINLWYGVLATHVEEKDRTSVIANEANFVGNLQKGCNKNGELRTKFNEILIEPFFVAADEDDDGKITVVQFKCLLKAWKSPDTSLETIFRLADPEKTGKINKLQXXXXXXXXXXXXXTKSSVATLFGRLVNYKRPEDYGD 842
            F ++ +KGK       +++ K+PE+Y E    P W  KMRT+FRRLD  G G +   D + +    ++   +   +K D I+ A +++W    +   E    T +  +E +F+ NL+     NGE R   +      FF A + +  G I++ +++ L +AW       E +F++ D +K GKI+  ++ S   ++F  E   S     FG +V+    E + +
Sbjct:  179 FFDVGIKGKTAKLFGALINYKRPEDYPECECGPVWEGKMRTMFRRLDLHGAGKIRCHDFIQIGR-ALAQRNHLPKHKADNILRAMLDIWVHYFSVDKEGSHFTEI--SEKDFIHNLRSMI--NGEFRHAIDRFGW-TFFKAVEVEGTGFISLAEYRNLQEAWHVGRAEAEGMFKVLDTDKDGKISSDEYLSAWCDYFLGEDPASPYKAFFGPVVSKHTRESFAE 396
[Close]
BLAST of Sarcoplasmic calcium-binding protein vs. TrEMBL
Match: A0A0R3SPA9 (Uncharacterized protein OS=Hymenolepis diminuta OX=6216 GN=HDID_LOCUS6778 PE=4 SV=1)

HSP 1 Score: 387.497 bits (994), Expect = 8.324e-128
Identity = 201/390 (51.54%), Postives = 269/390 (68.97%), Query Frame = 3 
Query:  222 VDSKKPEEY-NELTGDPFWTRKMRTLFRRLDSRGHGFVNLADILNVATDVISSFTNTDTYKGDQIVNAAINLWYGVLATHVEEKDRTSVIANEANFVGNLQKGCNKNGELRTKFNEILIEPFFVAADEDDDGKITVVQFKCLLKAWKSPDTSLETIFRLADPEKTGKINKLQXXXXXXXXXXXXXTKSSVATLFGRLVNYKRPEDYGDSEFGPYWEGKMRTMFRRFDVDNASKLKCHDFIQIARNIAHRGRLDKKRANVVLRAMLDVWVKWIALDKEGRHLAEVTEKEFIHNLRALLNGDYRHEIDQFGWTFFKSMESENSGFVTLQEYRNLQEAWGIGREEAEAMFXXXXXXXXXXXSSDEYLTGWVDYFLGDDTKSPYRGFFGPVIAK 1388
            ++ KK  +Y N  T  P W RKMRT+FRR DS G G V + + L++AT ++S F  +D + GDQ+V A I+LWYGV+ T   E  RT++   E +FV  + K  N  G  +T+F E +  P F  AD D DG +   +   ++  +       E +FRL D      ++K QFES+++E+FF    K   A LFG L+NYKRPEDY + E GP WEGKMRTMFRR D+  A K++CHDFIQI R +A R  L K +A+ +LRAMLD+WV + ++DKEG H  E+TEK+FIHN+R+++NG++RH ID+FGWTFFK++E E +GF++L EYRNLQEAW +GR EAE MFKVLD DKDGK+SSDEYL+ W DYFLG+D  SPY+ FFGPV++K
Sbjct:    1 MELKKTADYPNVDTTSPTWIRKMRTIFRRFDSHGRGAVGIDEFLDIATSILSEFPKSDQFFGDQLVQAMIHLWYGVICTEGPEHKRTAITMQENDFVQAMAKCIN--GNFKTEFTENITTPLFNMADGDKDGFMQQNEMGQVIVGFGGNQKEAELLFRLLDGGSKKGVSKEQFESVLAEYFFDVGIKGKTAKLFGALINYKRPEDYPECECGPVWEGKMRTMFRRLDLHGAGKIRCHDFIQIGRALAQRNHLPKHKADNILRAMLDIWVHYFSVDKEGAHFTEITEKDFIHNIRSMINGEFRHAIDRFGWTFFKAVEVEGTGFISLAEYRNLQEAWHVGRAEAEGMFKVLDTDKDGKISSDEYLSAWCDYFLGEDPASPYKTFFGPVVSK 388

HSP 2 Score: 85.8853 bits (211), Expect = 2.918e-14
Identity = 61/224 (27.23%), Postives = 109/224 (48.66%), Query Frame = 3 
Query:  186 FINLSLKGKEI-----MVDSKKPEEYNELTGDPFWTRKMRTLFRRLDSRGHGFVNLADILNVATDVISSFTNTDTYKGDQIVNAAINLWYGVLATHVEEKDRTSVIANEANFVGNLQKGCNKNGELRTKFNEILIEPFFVAADEDDDGKITVVQFKCLLKAWKSPDTSLETIFRLADPEKTGKINKLQXXXXXXXXXXXXXTKSSVATLFGRLVNYKRPEDYGD 842
            F ++ +KGK       +++ K+PE+Y E    P W  KMRT+FRRLD  G G +   D + +    ++   +   +K D I+ A +++W    +   E    T +   E +F+ N++     NGE R   +      FF A + +  G I++ +++ L +AW       E +F++ D +K GKI+  ++ S   ++F  E   S   T FG +V+    E + +
Sbjct:  179 FFDVGIKGKTAKLFGALINYKRPEDYPECECGPVWEGKMRTMFRRLDLHGAGKIRCHDFIQIGR-ALAQRNHLPKHKADNILRAMLDIWVHYFSVDKEGAHFTEI--TEKDFIHNIRSMI--NGEFRHAIDRFGW-TFFKAVEVEGTGFISLAEYRNLQEAWHVGRAEAEGMFKVLDTDKDGKISSDEYLSAWCDYFLGEDPASPYKTFFGPVVSKHGRESFAE 396
[Close]
BLAST of Sarcoplasmic calcium-binding protein vs. TrEMBL
Match: A0A158R8W6 (Uncharacterized protein OS=Taenia asiatica OX=60517 GN=TASK_LOCUS6214 PE=4 SV=1)

HSP 1 Score: 386.341 bits (991), Expect = 2.519e-127
Identity = 201/390 (51.54%), Postives = 269/390 (68.97%), Query Frame = 3 
Query:  222 VDSKKPEEYNELTGD-PFWTRKMRTLFRRLDSRGHGFVNLADILNVATDVISSFTNTDTYKGDQIVNAAINLWYGVLATHVEEKDRTSVIANEANFVGNLQKGCNKNGELRTKFNEILIEPFFVAADEDDDGKITVVQFKCLLKAWKSPDTSLETIFRLADPEKTGKINKLQXXXXXXXXXXXXXTKSSVATLFGRLVNYKRPEDYGDSEFGPYWEGKMRTMFRRFDVDNASKLKCHDFIQIARNIAHRGRLDKKRANVVLRAMLDVWVKWIALDKEGRHLAEVTEKEFIHNLRALLNGDYRHEIDQFGWTFFKSMESENSGFVTLQEYRNLQEAWGIGREEAEAMFXXXXXXXXXXXSSDEYLTGWVDYFLGDDTKSPYRGFFGPVIAK 1388
            ++ KK  +Y E+  + P W RKMRT+FRR D RG G V + + L++AT+V+S F  ++ + GDQ+V A I LWYGV+ T   E  RT ++ +E  FV  + K  N  G  +T+F + ++ P F  AD D DG I   +   ++ A+       E +FRL D      + K QFE +++EFFF    K   A LFG L+NYKRPEDY + E GP WEGKMRTMFRR D+  A KL+CHDFIQI R +A R  L K +A+ V+RAMLD+WV + ++DK+G H  E+TEK+FIHNLR+++NG++RH IDQ+GWTFFK++E E +GF++L EYRNLQEAW +GR EAE MFKVLD DKDGK+SSDEYL+ W +YFLG+D  SPY+ FFGPV+ K
Sbjct:    1 MEMKKAADYPEVDANSPTWIRKMRTVFRRFDFRGRGAVGIDEFLDIATNVLSEFPKSENFFGDQLVQAMIRLWYGVICTEGPEHQRTGIVMHENEFVKAMGKCVN--GLFKTEFVQNIVSPLFDIADSDKDGFIQQNEMSQVIVAFGGNQREAELLFRLLDAGTKKGVTKDQFEGVLAEFFFDVGIKGKTARLFGALINYKRPEDYPEVECGPVWEGKMRTMFRRLDLHGAGKLRCHDFIQIGRALAQRNHLPKHKADNVMRAMLDIWVHYFSVDKDGAHFTEITEKDFIHNLRSMINGEFRHAIDQYGWTFFKAVEVEGTGFISLAEYRNLQEAWRVGRAEAEGMFKVLDTDKDGKISSDEYLSAWCEYFLGEDPASPYKTFFGPVVTK 388

HSP 2 Score: 85.1149 bits (209), Expect = 5.045e-14
Identity = 60/215 (27.91%), Postives = 108/215 (50.23%), Query Frame = 3 
Query:  186 FINLSLKGKEI-----MVDSKKPEEYNELTGDPFWTRKMRTLFRRLDSRGHGFVNLADILNVATDVISSFTNTDTYKGDQIVNAAINLWYGVLATHVEEKDRTSVIANEANFVGNLQKGCNKNGELRTKFNEILIEPFFVAADEDDDGKITVVQFKCLLKAWKSPDTSLETIFRLADPEKTGKINKLQXXXXXXXXXXXXXTKSSVATLFGRLVN 815
            F ++ +KGK       +++ K+PE+Y E+   P W  KMRT+FRRLD  G G +   D + +    ++   +   +K D ++ A +++W    +   +    T +   E +F+ NL+     NGE R   ++     FF A + +  G I++ +++ L +AW+      E +F++ D +K GKI+  ++ S   E+F  E   S   T FG +V 
Sbjct:  179 FFDVGIKGKTARLFGALINYKRPEDYPEVECGPVWEGKMRTMFRRLDLHGAGKLRCHDFIQIGR-ALAQRNHLPKHKADNVMRAMLDIWVHYFSVDKDGAHFTEI--TEKDFIHNLRSMI--NGEFRHAIDQYGW-TFFKAVEVEGTGFISLAEYRNLQEAWRVGRAEAEGMFKVLDTDKDGKISSDEYLSAWCEYFLGEDPASPYKTFFGPVVT 387
[Close]
BLAST of Sarcoplasmic calcium-binding protein vs. Planmine SMEST
Match: SMESG000020808.1 (SMESG000020808.1)

HSP 1 Score: 756.518 bits (1952), Expect = 0.000e+0
Identity = 393/394 (99.75%), Postives = 393/394 (99.75%), Query Frame = 3 
Query:  219 MVDSKKPEEYNELTGDPFWTRKMRTLFRRLDSRGHGFVNLADILNVATDVISSFTNTDTYKGDQIVNAAINLWYGVLATHVEEKDRTSVIANEANFVGNLQKGCNKNGELRTKFNEILIEPFFVAADEDDDGKITVVQFKCLLKAWKSPDTSLETIFRLADPEKTGKINKLQXXXXXXXXXXXXXTKSSVATLFGRLVNYKRPEDYGDSEFGPYWEGKMRTMFRRFDVDNASKLKCHDFIQIARNIAHRGRLDKKRANVVLRAMLDVWVKWIALDKEGRHLAEVTEKEFIHNLRALLNGDYRHEIDQFGWTFFKSMESENSGFVTLQEYRNLQEAWGIGREEAEAMFXXXXXXXXXXXSSDEYLTGWVDYFLGDDTKSPYRGFFGPVIAKFEAR 1400
            MVDSKKPEEYNELTGDPFWTRKMRTLFRRLDSRGHGFVNLADILNVATDVISSFTNTDTYKGDQIVNAAINLWYGVLATHVEEKDRTSVIANEANFVGNLQKGCNKNGELRTKFNEILIEPFFVAADEDDDGKITVVQFKCLLKAWKSPDTSLETIFRLADPEKTGKINKLQFESIMSEFFFSEITKS VATLFGRLVNYKRPEDYGDSEFGPYWEGKMRTMFRRFDVDNASKLKCHDFIQIARNIAHRGRLDKKRANVVLRAMLDVWVKWIALDKEGRHLAEVTEKEFIHNLRALLNGDYRHEIDQFGWTFFKSMESENSGFVTLQEYRNLQEAWGIGREEAEAMFKVLDLDKDGKLSSDEYLTGWVDYFLGDDTKSPYRGFFGPVIAKFEAR
Sbjct:    1 MVDSKKPEEYNELTGDPFWTRKMRTLFRRLDSRGHGFVNLADILNVATDVISSFTNTDTYKGDQIVNAAINLWYGVLATHVEEKDRTSVIANEANFVGNLQKGCNKNGELRTKFNEILIEPFFVAADEDDDGKITVVQFKCLLKAWKSPDTSLETIFRLADPEKTGKINKLQFESIMSEFFFSEITKSPVATLFGRLVNYKRPEDYGDSEFGPYWEGKMRTMFRRFDVDNASKLKCHDFIQIARNIAHRGRLDKKRANVVLRAMLDVWVKWIALDKEGRHLAEVTEKEFIHNLRALLNGDYRHEIDQFGWTFFKSMESENSGFVTLQEYRNLQEAWGIGREEAEAMFKVLDLDKDGKLSSDEYLTGWVDYFLGDDTKSPYRGFFGPVIAKFEAR 394
The following BLAST results are available for this feature:
BLAST of Sarcoplasmic calcium-binding protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Sarcoplasmic calcium-binding protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Sarcoplasmic calcium-binding protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 3
Match NameE-valueIdentityDescription
CBP5.438e-727.46gene:FBgn0026144 transcript:FBtr0071053[more]
CBP7.203e-727.46gene:FBgn0026144 transcript:FBtr0071052[more]
CBP1.355e-627.17gene:FBgn0026144 transcript:FBtr0329894[more]
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BLAST of Sarcoplasmic calcium-binding protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Sarcoplasmic calcium-binding protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Sarcoplasmic calcium-binding protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Sarcoplasmic calcium-binding protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 2
Match NameE-valueIdentityDescription
sp|P04572|SCP_PERVT1.599e-1026.67Sarcoplasmic calcium-binding protein OS=Perinereis... [more]
sp|P04571|SCP_HEDDI2.752e-824.57Sarcoplasmic calcium-binding protein OS=Hediste di... [more]
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BLAST of Sarcoplasmic calcium-binding protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0X3PDS86.582e-13652.58Sarcoplasmic calcium-binding protein OS=Schistocep... [more]
A0A0X3NXZ04.044e-13351.65Sarcoplasmic calcium-binding protein OS=Schistocep... [more]
A0A0R3T8042.606e-12951.28Uncharacterized protein OS=Rodentolepis nana OX=10... [more]
A0A0R3SPA98.324e-12851.54Uncharacterized protein OS=Hymenolepis diminuta OX... [more]
A0A158R8W62.519e-12751.54Uncharacterized protein OS=Taenia asiatica OX=6051... [more]
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BLAST of Sarcoplasmic calcium-binding protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Sarcoplasmic calcium-binding protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Sarcoplasmic calcium-binding protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Sarcoplasmic calcium-binding protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Sarcoplasmic calcium-binding protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Sarcoplasmic calcium-binding protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 1
Match NameE-valueIdentityDescription
SMESG000020808.10.000e+099.75SMESG000020808.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30013408 ID=SMED30013408|Name=Sarcoplasmic calcium-binding protein|organism=Schmidtea mediterranea sexual|type=transcript|length=1550bp
TGAATAACTGCTTCGGTGGTAGCTTTGAGGTGCGGTGCAAGGCCAACTAA
TCAATATATTTGTGCTAGGCACACGAAACTGGGAAGAAGGGAGAAAAGTA
ATTTTTTAACTAAAAATCTCCCAACTGTATTTGATTAGCATATATATTTT
ATTCACTAGTCATCAATTTCACAGTCATTCGCAAATTTATTAATCTTTCG
TTGAAAGGAAAAGAAATTATGGTAGACTCCAAAAAACCTGAAGAATACAA
TGAACTAACTGGAGATCCGTTTTGGACACGAAAAATGAGAACGCTCTTCA
GAAGGTTAGACTCAAGAGGACATGGGTTTGTAAACTTAGCGGATATCCTC
AATGTGGCAACTGATGTTATTTCATCCTTTACCAACACGGATACATATAA
AGGTGATCAGATCGTAAATGCCGCTATAAACCTTTGGTATGGAGTTCTGG
CGACCCATGTTGAGGAGAAAGATCGAACATCAGTTATTGCGAACGAGGCC
AATTTTGTTGGAAATTTGCAAAAAGGATGCAATAAAAATGGTGAATTAAG
AACGAAGTTCAATGAGATTTTAATTGAACCATTTTTTGTTGCCGCTGATG
AAGATGATGACGGCAAAATTACAGTAGTCCAATTTAAATGCTTGTTAAAA
GCTTGGAAGTCTCCAGATACTTCATTGGAGACAATTTTCAGATTAGCCGA
CCCCGAAAAAACTGGAAAAATCAACAAACTTCAATTTGAAAGTATAATGA
GTGAATTCTTTTTCTCGGAAATTACAAAAAGTTCTGTTGCAACTTTATTT
GGACGGCTTGTGAATTATAAAAGACCTGAAGATTATGGAGATTCAGAATT
CGGTCCCTATTGGGAAGGGAAAATGAGAACAATGTTTCGTAGGTTTGATG
TTGATAATGCCAGTAAACTGAAATGTCATGATTTTATTCAAATCGCTCGA
AATATTGCCCATCGTGGACGGTTGGATAAGAAACGCGCAAACGTAGTGTT
GAGAGCGATGTTGGATGTTTGGGTAAAATGGATCGCCCTTGATAAAGAAG
GTCGTCATTTGGCTGAGGTTACTGAAAAGGAATTTATTCATAATCTCAGG
GCTCTACTTAATGGAGACTACCGACACGAAATAGATCAATTCGGATGGAC
ATTTTTCAAATCTATGGAGAGTGAAAACAGTGGATTTGTTACTCTTCAAG
AATATCGAAATTTACAAGAAGCTTGGGGTATTGGTCGAGAGGAAGCTGAA
GCAATGTTTAAAGTACTTGATCTTGACAAAGACGGCAAATTGAGCAGCGA
TGAGTATTTGACCGGCTGGGTGGATTACTTTTTAGGTGACGATACAAAGA
GTCCTTACCGAGGGTTTTTTGGGCCAGTAATAGCAAAGTTTGAAGCTCGC
TAAGATATATTTGGTTAACCTTTTGAACAACTAGTATTATTATGTGCACG
CTTTATTGCAAATTGAATTTGAAATTTTATTAACTTTTTGTTGTCAATTG
CAAAATATATTAAGTAATATCTTTTGATTAAAAGTTGTAGTGAAAAAAAA
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protein sequence of SMED30013408-orf-1

>SMED30013408-orf-1 ID=SMED30013408-orf-1|Name=SMED30013408-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=395bp
MVDSKKPEEYNELTGDPFWTRKMRTLFRRLDSRGHGFVNLADILNVATDV
ISSFTNTDTYKGDQIVNAAINLWYGVLATHVEEKDRTSVIANEANFVGNL
QKGCNKNGELRTKFNEILIEPFFVAADEDDDGKITVVQFKCLLKAWKSPD
TSLETIFRLADPEKTGKINKLQFESIMSEFFFSEITKSSVATLFGRLVNY
KRPEDYGDSEFGPYWEGKMRTMFRRFDVDNASKLKCHDFIQIARNIAHRG
RLDKKRANVVLRAMLDVWVKWIALDKEGRHLAEVTEKEFIHNLRALLNGD
YRHEIDQFGWTFFKSMESENSGFVTLQEYRNLQEAWGIGREEAEAMFKVL
DLDKDGKLSSDEYLTGWVDYFLGDDTKSPYRGFFGPVIAKFEAR*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000101muscle cell
PLANA:0000428musculature system
PLANA:0002089reproductive organ
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR011992EF-hand-dom_pair
IPR018247EF_Hand_1_Ca_BS
Vocabulary: molecular function
TermDefinition
GO:0005509calcium ion binding
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002048EF-hand domainSMARTSM00054efh_1coord: 152..180
e-value: 2.6
score: 14.4
coord: 218..246
e-value: 70.0
score: 2.9
coord: 118..146
e-value: 63.0
score: 3.3
coord: 342..370
e-value: 0.043
score: 23.0
coord: 22..50
e-value: 150.0
score: 0.2
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 18..53
score: 6.284
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 148..183
score: 9.548
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 214..249
score: 7.372
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 338..373
score: 11.361
IPR002048EF-hand domainCDDcd00051EFhcoord: 313..367
e-value: 5.32628E-7
score: 44.4609
NoneNo IPR availablePFAMPF13833EF-hand_8coord: 332..369
e-value: 3.1E-6
score: 26.9
NoneNo IPR availableGENE3DG3DSA:1.10.238.10coord: 213..388
e-value: 3.1E-47
score: 162.6
coord: 16..198
e-value: 9.6E-32
score: 112.2
NoneNo IPR availablePANTHERPTHR23050CALCIUM BINDING PROTEINcoord: 119..257
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 351..363
IPR011992EF-hand domain pairSUPERFAMILYSSF47473EF-handcoord: 214..376
IPR011992EF-hand domain pairSUPERFAMILYSSF47473EF-handcoord: 119..253