Eukaryotic translation initiation factor 4H-like protein

Overview


Name	Eukaryotic translation initiation factor 4H-like protein
Smed ID	SMED30013357
Length (bp)	1295

Neoblast Clusters

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.

Expression of Eukaryotic translation initiation factor 4H-like protein (SMED30013357) t-SNE clustered cells

Violin plots show distribution of expression levels for Eukaryotic translation initiation factor 4H-like protein (SMED30013357) in cells (dots) of each of the 12 neoblast clusters.

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Eukaryotic translation initiation factor 4H-like protein (SMED30013357) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30013357

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 4

Expressed In	Reference Transcript	Gene Models	Published Transcript	Transcriptome	Publication
muscle cell	SMED30013357	SMESG000058217.1	dd_Smed_v4_4137_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
Smed sexual biotype	SMED30013357	SMESG000058217.1	Contig13565	newmark_ests	PMID:29674431 Fincher et al., 2018
Smed sexual biotype	SMED30013357	SMESG000058217.1	Contig13565	uc_Smed_v2	PMID:29674431 Fincher et al., 2018
epidermis	SMED30013357	SMESG000058217.1	dd_Smed_v4_4137_0_1	dd_Smed_v4	PMID:28292427 Wurtzel et al., 2017

Note: Hover over icons to view figure legend

Homology

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BLAST of Eukaryotic translation initiation factor 4H-like protein vs. Ensembl Human
Match: EIF4H (eukaryotic translation initiation factor 4H [Source:HGNC Symbol;Acc:HGNC:12741])

HSP 1 Score: 70.4774 bits (171), Expect = 3.036e-13
Identity = 29/66 (43.94%), Postives = 50/66 (75.76%), Query Frame = 1

Query:  145 NISTVFFQT*IVNTRMIRDRETDEFKGYAYVEFSDPQSLEEALSFNKARIGENILKVNVAEGRKKE 342
            +I  +F    I + R++RD++TD+FKG+ YVEF +  SL+EAL+++ A +G+  L+V++AEGRK++
Sbjct:   57 DIDAIFKDLSIRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIAEGRKQD 122

HSP 2 Score: 51.9878 bits (123), Expect = 4.864e-7
Identity = 22/39 (56.41%), Postives = 28/39 (71.79%), Query Frame = 2

Query:   53 SVMANQIPSEPPYLAYVGNLPKNTVQGDFEKIFQQCSFK 169
            S    ++P+EPPY AYVGNLP NTVQGD + IF+  S +
Sbjct:   30 SRSQKELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLSIR 68

[Close]

BLAST of Eukaryotic translation initiation factor 4H-like protein vs. Ensembl Human
Match: EIF4H (eukaryotic translation initiation factor 4H [Source:HGNC Symbol;Acc:HGNC:12741])

HSP 1 Score: 70.8626 bits (172), Expect = 3.144e-13
Identity = 29/66 (43.94%), Postives = 50/66 (75.76%), Query Frame = 1

Query:  145 NISTVFFQT*IVNTRMIRDRETDEFKGYAYVEFSDPQSLEEALSFNKARIGENILKVNVAEGRKKE 342
            +I  +F    I + R++RD++TD+FKG+ YVEF +  SL+EAL+++ A +G+  L+V++AEGRK++
Sbjct:   57 DIDAIFKDLSIRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIAEGRKQD 122

HSP 2 Score: 52.373 bits (124), Expect = 5.259e-7
Identity = 21/34 (61.76%), Postives = 27/34 (79.41%), Query Frame = 2

Query:   68 QIPSEPPYLAYVGNLPKNTVQGDFEKIFQQCSFK 169
            ++P+EPPY AYVGNLP NTVQGD + IF+  S +
Sbjct:   35 ELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLSIR 68

[Close]

BLAST of Eukaryotic translation initiation factor 4H-like protein vs. Ensembl Celegans
Match: drr-2 (Dietary Restriction Response (WT but not eat-2 lifespan increased) [Source:UniProtKB/TrEMBL;Acc:O45781])

HSP 1 Score: 40.817 bits (94), Expect = 3.556e-6
Identity = 20/50 (40.00%), Postives = 31/50 (62.00%), Query Frame = 1

Query:  181 NTRMIRDRETDEFKGYAYVEFSDPQSLEEALS-FNKARIGENILKVNVAE 327
            +  ++ DR++  FKG+AYV F + Q +  A+S  N A  G  +LKVN A+
Sbjct:   40 DIHLVHDRDSGSFKGFAYVTFENEQQMNTAISGLNGADFGNRVLKVNRAQ 89

HSP 2 Score: 28.8758 bits (63), Expect = 3.556e-6
Identity = 12/36 (33.33%), Postives = 21/36 (58.33%), Query Frame = 2

Query:   59 MANQIPSEPPYLAYVGNLPKNTVQGDFEKIFQQCSF 166
            MA++I     + A++G LP +++  D E I + C F
Sbjct:    1 MADEI-----FKAFIGGLPYDSIATDIETILKHCKF 31

[Close]

BLAST of Eukaryotic translation initiation factor 4H-like protein vs. Ensembl Fly
Match: eIF4H2 (gene:FBgn0039797 transcript:FBtr0339513)

HSP 1 Score: 51.9878 bits (123), Expect = 6.151e-7
Identity = 26/68 (38.24%), Postives = 42/68 (61.76%), Query Frame = 1

Query:  145 NISTVFFQT*IVNTRMIRDRETDEFKGYAYVEFSDPQSLEEALSFNKARIGENI---LKVNVAEGRKK 339
            ++  +F    + N R+I+DRETDEFKGY YVEF     L+ AL+ N     +N    L++++A+ R++
Sbjct:   78 DVMKIFSDFEVKNVRLIKDRETDEFKGYGYVEFETLAQLKSALNCNGRIKLDNFSAPLRIDIADHRRQ 145

[Close]

BLAST of Eukaryotic translation initiation factor 4H-like protein vs. Ensembl Fly
Match: eIF4H2 (gene:FBgn0039797 transcript:FBtr0085699)

HSP 1 Score: 51.9878 bits (123), Expect = 6.151e-7
Identity = 26/68 (38.24%), Postives = 42/68 (61.76%), Query Frame = 1

Query:  145 NISTVFFQT*IVNTRMIRDRETDEFKGYAYVEFSDPQSLEEALSFNKARIGENI---LKVNVAEGRKK 339
            ++  +F    + N R+I+DRETDEFKGY YVEF     L+ AL+ N     +N    L++++A+ R++
Sbjct:   78 DVMKIFSDFEVKNVRLIKDRETDEFKGYGYVEFETLAQLKSALNCNGRIKLDNFSAPLRIDIADHRRQ 145

[Close]

BLAST of Eukaryotic translation initiation factor 4H-like protein vs. Ensembl Zebrafish
Match: eif4h (eukaryotic translation initiation factor 4h [Source:ZFIN;Acc:ZDB-GENE-010328-19])

HSP 1 Score: 64.3142 bits (155), Expect = 1.775e-11
Identity = 26/60 (43.33%), Postives = 45/60 (75.00%), Query Frame = 1

Query:  145 NISTVFFQT*IVNTRMIRDRETDEFKGYAYVEFSDPQSLEEALSFNKARIGENILKVNVA 324
            +I  +F    + + R++RD+ETD+FKG+ YVEF D +SL+EAL+++ A +G+  L+V++A
Sbjct:   59 DIDAIFRDLSVRSVRLVRDKETDKFKGFCYVEFDDLESLKEALTYDGALLGDRSLRVDIA 118

HSP 2 Score: 51.9878 bits (123), Expect = 2.329e-7
Identity = 21/34 (61.76%), Postives = 27/34 (79.41%), Query Frame = 2

Query:   68 QIPSEPPYLAYVGNLPKNTVQGDFEKIFQQCSFK 169
            ++P+EPPY AYVGNLP NTVQGD + IF+  S +
Sbjct:   37 ELPTEPPYTAYVGNLPFNTVQGDIDAIFRDLSVR 70

[Close]

BLAST of Eukaryotic translation initiation factor 4H-like protein vs. Ensembl Zebrafish
Match: eif4h (eukaryotic translation initiation factor 4h [Source:ZFIN;Acc:ZDB-GENE-010328-19])

HSP 1 Score: 64.3142 bits (155), Expect = 3.083e-11
Identity = 26/60 (43.33%), Postives = 45/60 (75.00%), Query Frame = 1

Query:  145 NISTVFFQT*IVNTRMIRDRETDEFKGYAYVEFSDPQSLEEALSFNKARIGENILKVNVA 324
            +I  +F    + + R++RD+ETD+FKG+ YVEF D +SL+EAL+++ A +G+  L+V++A
Sbjct:   59 DIDAIFRDLSVRSVRLVRDKETDKFKGFCYVEFDDLESLKEALTYDGALLGDRSLRVDIA 118

HSP 2 Score: 51.9878 bits (123), Expect = 4.882e-7
Identity = 21/34 (61.76%), Postives = 27/34 (79.41%), Query Frame = 2

Query:   68 QIPSEPPYLAYVGNLPKNTVQGDFEKIFQQCSFK 169
            ++P+EPPY AYVGNLP NTVQGD + IF+  S +
Sbjct:   37 ELPTEPPYTAYVGNLPFNTVQGDIDAIFRDLSVR 70

[Close]

BLAST of Eukaryotic translation initiation factor 4H-like protein vs. Ensembl Zebrafish
Match: eif4h (eukaryotic translation initiation factor 4h [Source:ZFIN;Acc:ZDB-GENE-010328-19])

HSP 1 Score: 64.3142 bits (155), Expect = 3.250e-11
Identity = 26/60 (43.33%), Postives = 45/60 (75.00%), Query Frame = 1

Query:  145 NISTVFFQT*IVNTRMIRDRETDEFKGYAYVEFSDPQSLEEALSFNKARIGENILKVNVA 324
            +I  +F    + + R++RD+ETD+FKG+ YVEF D +SL+EAL+++ A +G+  L+V++A
Sbjct:   59 DIDAIFRDLSVRSVRLVRDKETDKFKGFCYVEFDDLESLKEALTYDGALLGDRSLRVDIA 118

HSP 2 Score: 51.6026 bits (122), Expect = 5.300e-7
Identity = 21/34 (61.76%), Postives = 27/34 (79.41%), Query Frame = 2

Query:   68 QIPSEPPYLAYVGNLPKNTVQGDFEKIFQQCSFK 169
            ++P+EPPY AYVGNLP NTVQGD + IF+  S +
Sbjct:   37 ELPTEPPYTAYVGNLPFNTVQGDIDAIFRDLSVR 70

[Close]

BLAST of Eukaryotic translation initiation factor 4H-like protein vs. Ensembl Xenopus
Match: tfec (transcription factor EC [Source:Xenbase;Acc:XB-GENE-986001])

HSP 1 Score: 67.3958 bits (163), Expect = 4.303e-12
Identity = 29/66 (43.94%), Postives = 48/66 (72.73%), Query Frame = 1

Query:  145 NISTVFFQT*IVNTRMIRDRETDEFKGYAYVEFSDPQSLEEALSFNKARIGENILKVNVAEGRKKE 342
            +I  +F    I + R++RD+ETD+FKG+ YVEF D  SL+EAL+++ A   +  ++V++AEGRK++
Sbjct:   57 DIDNIFKDLSIRSVRLVRDKETDKFKGFCYVEFDDLDSLKEALTYDGAIFIDRAIRVDIAEGRKQD 122

[Close]

BLAST of Eukaryotic translation initiation factor 4H-like protein vs. Ensembl Xenopus
Match: tfec (transcription factor EC [Source:Xenbase;Acc:XB-GENE-986001])

HSP 1 Score: 67.0106 bits (162), Expect = 4.637e-12
Identity = 29/66 (43.94%), Postives = 48/66 (72.73%), Query Frame = 1

Query:  145 NISTVFFQT*IVNTRMIRDRETDEFKGYAYVEFSDPQSLEEALSFNKARIGENILKVNVAEGRKKE 342
            +I  +F    I + R++RD+ETD+FKG+ YVEF D  SL+EAL+++ A   +  ++V++AEGRK++
Sbjct:   57 DIDNIFKDLSIRSVRLVRDKETDKFKGFCYVEFDDLDSLKEALTYDGAIFIDRAIRVDIAEGRKQD 122

[Close]

BLAST of Eukaryotic translation initiation factor 4H-like protein vs. Ensembl Mouse
Match: Eif4h (eukaryotic translation initiation factor 4H [Source:MGI Symbol;Acc:MGI:1341822])

HSP 1 Score: 70.8626 bits (172), Expect = 1.909e-13
Identity = 29/66 (43.94%), Postives = 50/66 (75.76%), Query Frame = 1

Query:  145 NISTVFFQT*IVNTRMIRDRETDEFKGYAYVEFSDPQSLEEALSFNKARIGENILKVNVAEGRKKE 342
            +I  +F    I + R++RD++TD+FKG+ YVEF +  SL+EAL+++ A +G+  L+V++AEGRK++
Sbjct:   57 DIDAIFKDLSIRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIAEGRKQD 122

HSP 2 Score: 52.373 bits (124), Expect = 3.644e-7
Identity = 21/34 (61.76%), Postives = 27/34 (79.41%), Query Frame = 2

Query:   68 QIPSEPPYLAYVGNLPKNTVQGDFEKIFQQCSFK 169
            ++P+EPPY AYVGNLP NTVQGD + IF+  S +
Sbjct:   35 ELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLSIR 68

[Close]

BLAST of Eukaryotic translation initiation factor 4H-like protein vs. Ensembl Mouse
Match: Eif4h (eukaryotic translation initiation factor 4H [Source:MGI Symbol;Acc:MGI:1341822])

HSP 1 Score: 70.4774 bits (171), Expect = 1.932e-13
Identity = 29/66 (43.94%), Postives = 50/66 (75.76%), Query Frame = 1

Query:  145 NISTVFFQT*IVNTRMIRDRETDEFKGYAYVEFSDPQSLEEALSFNKARIGENILKVNVAEGRKKE 342
            +I  +F    I + R++RD++TD+FKG+ YVEF +  SL+EAL+++ A +G+  L+V++AEGRK++
Sbjct:   57 DIDAIFKDLSIRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIAEGRKQD 122

HSP 2 Score: 51.9878 bits (123), Expect = 3.340e-7
Identity = 21/34 (61.76%), Postives = 27/34 (79.41%), Query Frame = 2

Query:   68 QIPSEPPYLAYVGNLPKNTVQGDFEKIFQQCSFK 169
            ++P+EPPY AYVGNLP NTVQGD + IF+  S +
Sbjct:   35 ELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLSIR 68

[Close]

BLAST of Eukaryotic translation initiation factor 4H-like protein vs. UniProt/SwissProt
Match: sp|Q9WUK2|IF4H_MOUSE (Eukaryotic translation initiation factor 4H OS=Mus musculus OX=10090 GN=Eif4h PE=1 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 1.336e-12
Identity = 29/66 (43.94%), Postives = 50/66 (75.76%), Query Frame = 1

Query:  145 NISTVFFQT*IVNTRMIRDRETDEFKGYAYVEFSDPQSLEEALSFNKARIGENILKVNVAEGRKKE 342
            +I  +F    I + R++RD++TD+FKG+ YVEF +  SL+EAL+++ A +G+  L+V++AEGRK++
Sbjct:   57 DIDAIFKDLSIRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIAEGRKQD 122

HSP 2 Score: 52.373 bits (124), Expect = 2.549e-6
Identity = 21/34 (61.76%), Postives = 27/34 (79.41%), Query Frame = 2

Query:   68 QIPSEPPYLAYVGNLPKNTVQGDFEKIFQQCSFK 169
            ++P+EPPY AYVGNLP NTVQGD + IF+  S +
Sbjct:   35 ELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLSIR 68

[Close]

BLAST of Eukaryotic translation initiation factor 4H-like protein vs. UniProt/SwissProt
Match: sp|Q5XI72|IF4H_RAT (Eukaryotic translation initiation factor 4H OS=Rattus norvegicus OX=10116 GN=Eif4h PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.400e-12
Identity = 29/66 (43.94%), Postives = 50/66 (75.76%), Query Frame = 1

Query:  145 NISTVFFQT*IVNTRMIRDRETDEFKGYAYVEFSDPQSLEEALSFNKARIGENILKVNVAEGRKKE 342
            +I  +F    I + R++RD++TD+FKG+ YVEF +  SL+EAL+++ A +G+  L+V++AEGRK++
Sbjct:   57 DIDAIFKDLSIRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIAEGRKQD 122

HSP 2 Score: 51.9878 bits (123), Expect = 2.644e-6
Identity = 21/34 (61.76%), Postives = 27/34 (79.41%), Query Frame = 2

Query:   68 QIPSEPPYLAYVGNLPKNTVQGDFEKIFQQCSFK 169
            ++P+EPPY AYVGNLP NTVQGD + IF+  S +
Sbjct:   35 ELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLSIR 68

[Close]

BLAST of Eukaryotic translation initiation factor 4H-like protein vs. UniProt/SwissProt
Match: sp|Q1JPH6|IF4H_BOVIN (Eukaryotic translation initiation factor 4H OS=Bos taurus OX=9913 GN=EIF4H PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.431e-12
Identity = 29/66 (43.94%), Postives = 50/66 (75.76%), Query Frame = 1

Query:  145 NISTVFFQT*IVNTRMIRDRETDEFKGYAYVEFSDPQSLEEALSFNKARIGENILKVNVAEGRKKE 342
            +I  +F    I + R++RD++TD+FKG+ YVEF +  SL+EAL+++ A +G+  L+V++AEGRK++
Sbjct:   57 DIDAIFKDLSIRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIAEGRKQD 122

HSP 2 Score: 51.9878 bits (123), Expect = 2.424e-6
Identity = 22/39 (56.41%), Postives = 28/39 (71.79%), Query Frame = 2

Query:   53 SVMANQIPSEPPYLAYVGNLPKNTVQGDFEKIFQQCSFK 169
            S    ++P+EPPY AYVGNLP NTVQGD + IF+  S +
Sbjct:   30 SRSQKELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLSIR 68

[Close]

BLAST of Eukaryotic translation initiation factor 4H-like protein vs. UniProt/SwissProt
Match: sp|Q15056|IF4H_HUMAN (Eukaryotic translation initiation factor 4H OS=Homo sapiens OX=9606 GN=EIF4H PE=1 SV=5)

HSP 1 Score: 70.8626 bits (172), Expect = 1.510e-12
Identity = 29/66 (43.94%), Postives = 50/66 (75.76%), Query Frame = 1

Query:  145 NISTVFFQT*IVNTRMIRDRETDEFKGYAYVEFSDPQSLEEALSFNKARIGENILKVNVAEGRKKE 342
            +I  +F    I + R++RD++TD+FKG+ YVEF +  SL+EAL+++ A +G+  L+V++AEGRK++
Sbjct:   57 DIDAIFKDLSIRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIAEGRKQD 122

HSP 2 Score: 52.373 bits (124), Expect = 2.525e-6
Identity = 21/34 (61.76%), Postives = 27/34 (79.41%), Query Frame = 2

Query:   68 QIPSEPPYLAYVGNLPKNTVQGDFEKIFQQCSFK 169
            ++P+EPPY AYVGNLP NTVQGD + IF+  S +
Sbjct:   35 ELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLSIR 68

[Close]

BLAST of Eukaryotic translation initiation factor 4H-like protein vs. UniProt/SwissProt
Match: sp|Q5RBR8|IF4H_PONAB (Eukaryotic translation initiation factor 4H OS=Pongo abelii OX=9601 GN=EIF4H PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.558e-12
Identity = 29/66 (43.94%), Postives = 50/66 (75.76%), Query Frame = 1

Query:  145 NISTVFFQT*IVNTRMIRDRETDEFKGYAYVEFSDPQSLEEALSFNKARIGENILKVNVAEGRKKE 342
            +I  +F    I + R++RD++TD+FKG+ YVEF +  SL+EAL+++ A +G+  L+V++AEGRK++
Sbjct:   57 DIDAIFKDLSIRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIAEGRKQD 122

HSP 2 Score: 51.9878 bits (123), Expect = 2.230e-6
Identity = 21/34 (61.76%), Postives = 27/34 (79.41%), Query Frame = 2

Query:   68 QIPSEPPYLAYVGNLPKNTVQGDFEKIFQQCSFK 169
            ++P+EPPY AYVGNLP NTVQGD + IF+  S +
Sbjct:   35 ELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLSIR 68

[Close]

BLAST of Eukaryotic translation initiation factor 4H-like protein vs. TrEMBL
Match: T1L2B2 (RRM domain-containing protein OS=Tetranychus urticae OX=32264 GN=107369648 PE=4 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 6.624e-18
Identity = 80/251 (31.87%), Postives = 117/251 (46.61%), Query Frame = 1

Query:  145 NISTVFFQT*IVNTRMIRDRETDEFKGYAYVEFSDPQSLEEALSFNKARIGENILKVNVAEGRKKEQNNXXXXXXXXXXXXXXXXXXXXXXXXXFAQNNIDSQNEIVNRGNFFPSR--GQGSRPNNQQYKNERYPNNQYKDTEGFNRVYHGARNRGGNNFSANRGAGNFYNDNRLRNDSERXXXXXXXXXXXXXXXXXXXXXAIAQKDRPRLRLLPRSIDAPLNEQIHSERTAAIFGLGKPREASPIREKR 891
            +I  +F    I   R++RD+ETD FKGY +VEF D +SL+++L  + A     +L+++  + ++K+QN     G  R RG   N   +     GF            NRGNFF  R  G+G   NN++     Y +  Y D     R +     RG NNF      GN Y  NR  N+ ER                  +   IA  +RP+L+LLPR+   P+N+   ++   AIFG  KPR+     E+R
Sbjct:   63 DIDVIFKSLKISTARLVRDKETDIFKGYGFVEFHDVESLKKSLELDGAEYCGRVLRIHPCDNKRKDQNRNQRGGFDRNRGSQGNMNNRGRGTGGFVPQ---------NRGNFFNDREEGRGGFDNNRRGG---YNDRNYNDRGFRGRSFE---ERGKNNF------GNRYGGNRNFNNRER------KPAPVFEEFKEPTEEEIA--NRPKLKLLPRTKPTPVNDLAETKDRDAIFGGAKPRDEKVYEERR 284

HSP 2 Score: 40.817 bits (94), Expect = 6.624e-18
Identity = 18/25 (72.00%), Postives = 20/25 (80.00%), Query Frame = 2

Query:   80 EPPYLAYVGNLPKNTVQGDFEKIFQ 154
            EPPY  YVGNLP NTVQGD + IF+
Sbjct:   45 EPPYQIYVGNLPPNTVQGDIDVIFK 69

[Close]

BLAST of Eukaryotic translation initiation factor 4H-like protein vs. TrEMBL
Match: A0A443SWJ3 (Eukaryotic translation initiation factor 4H-like protein OS=Leptotrombidium deliense OX=299467 GN=B4U80_04013 PE=4 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.436e-17
Identity = 79/250 (31.60%), Postives = 122/250 (48.80%), Query Frame = 1

Query:  145 NISTVFFQT*IVNTRMIRDRETDEFKGYAYVEFSDPQSLEEALSFNKARIGENILKVNVAEGRKKEQNNXXXXXXXXXXXXXXXXXXXXXXXXXFAQNNIDSQNEIVNRGNFFPSRGQGSRPNNQQYKNERYPNNQYKDTEGFNRVYHGARNRGGNNFSANRGAGNFYNDNRLRNDSERXXXXXXXXXXXXXXXXXXXXXAIAQ-KDRPRLRLLPRSIDAPLNEQIHSERTAAIFGLGKPREASPIREKR 891
            +I  +F    I ++R++RD+ETD+FKGY +VEF D +SL++AL F+ A  G N+L+V+V + ++ E+    G         G      R+Q       ++  +    NRG +F  RG G R        ER     + D  GF   +    +RG  NF    G    +   R R ++               P   F  SA+    +RPRL+LLPRS++AP+N+   ++R +AIFG  KPR+     E+R
Sbjct:   66 DIDYIFKNLKIRSSRLVRDKETDKFKGYCFVEFYDVESLKQALEFDGADFGGNLLRVHVVDHKRNEKKGFAGGRGGGASRVGTGYDRNRSQG-----QSVRGRGFQQNRGGYFNDRG-GDRQGRPGQDRER-----FGDQRGFRSGFGDRSDRGRGNFGGRYGG---FTKGRERRNTP--------------PSEDFKESAVGDGTERPRLKLLPRSVEAPVNDVAETKRRSAIFGEAKPRDERVYEERR 287

[Close]

BLAST of Eukaryotic translation initiation factor 4H-like protein vs. TrEMBL
Match: V9L529 (Eukaryotic translation initiation factor 4H OS=Callorhinchus milii OX=7868 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.331e-16
Identity = 29/69 (42.03%), Postives = 50/69 (72.46%), Query Frame = 1

Query:  145 NISTVFFQT*IVNTRMIRDRETDEFKGYAYVEFSDPQSLEEALSFNKARIGENILKVNVAEGRKKEQNN 351
            +I  +F    + + R++RD+ETD+FKG+ YVEF D +SLEE+L+F+ A  G+  L+V++AE R++++  
Sbjct:   49 DIDLIFKDLRVRSIRLVRDKETDKFKGFCYVEFDDLESLEESLTFDGALYGDRTLRVDIAESRRQDKGG 117

HSP 2 Score: 43.1282 bits (100), Expect = 6.331e-16
Identity = 20/47 (42.55%), Postives = 29/47 (61.70%), Query Frame = 2

Query:   26 FCNQRKLKIS----VMANQIPSEPPYLAYVGNLPKNTVQGDFEKIFQ 154
            F  +RK +          ++P+EPP+ A+VGNLP N VQGD + IF+
Sbjct:    9 FGGRRKPRAGGDCPRRQKELPTEPPFTAFVGNLPFNAVQGDIDLIFK 55

[Close]

BLAST of Eukaryotic translation initiation factor 4H-like protein vs. TrEMBL
Match: V9LA30 (Eukaryotic translation initiation factor 4H OS=Callorhinchus milii OX=7868 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.337e-16
Identity = 29/69 (42.03%), Postives = 50/69 (72.46%), Query Frame = 1

Query:  145 NISTVFFQT*IVNTRMIRDRETDEFKGYAYVEFSDPQSLEEALSFNKARIGENILKVNVAEGRKKEQNN 351
            +I  +F    + + R++RD+ETD+FKG+ YVEF D +SLEE+L+F+ A  G+  L+V++AE R++++  
Sbjct:   49 DIDLIFKDLRVRSIRLVRDKETDKFKGFCYVEFDDLESLEESLTFDGALYGDRTLRVDIAESRRQDKGG 117

HSP 2 Score: 43.1282 bits (100), Expect = 6.337e-16
Identity = 20/47 (42.55%), Postives = 29/47 (61.70%), Query Frame = 2

Query:   26 FCNQRKLKIS----VMANQIPSEPPYLAYVGNLPKNTVQGDFEKIFQ 154
            F  +RK +          ++P+EPP+ A+VGNLP N VQGD + IF+
Sbjct:    9 FGGRRKPRAGGDCPRRQKELPTEPPFTAFVGNLPFNAVQGDIDLIFK 55

[Close]

BLAST of Eukaryotic translation initiation factor 4H-like protein vs. TrEMBL
Match: V4A9B2 (RRM domain-containing protein (Fragment) OS=Lottia gigantea OX=225164 GN=LOTGIDRAFT_69072 PE=4 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.179e-16
Identity = 31/66 (46.97%), Postives = 51/66 (77.27%), Query Frame = 1

Query:  145 NISTVFFQT*IVNTRMIRDRETDEFKGYAYVEFSDPQSLEEALSFNKARIGENILKVNVAEGRKKE 342
            ++  +F    + + R++RDR+TDEFKG+AYVEF D +SL+EAL+++ A + +  L+V+VAEGR+K+
Sbjct:   52 DLEEIFRDLKVHSVRLVRDRDTDEFKGFAYVEFDDIESLKEALTYDGALLEDKNLRVDVAEGRRKD 117

HSP 2 Score: 43.5134 bits (101), Expect = 8.179e-16
Identity = 16/29 (55.17%), Postives = 22/29 (75.86%), Query Frame = 2

Query:   71 IPSEPPYLAYVGNLPKNTVQGDFEKIFQQ 157
            +P+EPPY  Y+GNLP+  VQ D E+IF+ 
Sbjct:   31 LPTEPPYTCYIGNLPRGVVQMDLEEIFRD 59

[Close]

BLAST of Eukaryotic translation initiation factor 4H-like protein vs. Ensembl Cavefish
Match: eif4h (eukaryotic translation initiation factor 4H [Source:NCBI gene;Acc:103040479])

HSP 1 Score: 74.7146 bits (182), Expect = 7.392e-15
Identity = 31/69 (44.93%), Postives = 52/69 (75.36%), Query Frame = 1

Query:  145 NISTVFFQT*IVNTRMIRDRETDEFKGYAYVEFSDPQSLEEALSFNKARIGENILKVNVAEGRKKEQNN 351
            +I  +F    + + R++RD+ETD+FKG+ YVEF D +SL+EAL+++ A +G+  L+V++AEGRK+E+  
Sbjct:   59 DIDAIFKDLSVRSVRLVRDKETDKFKGFCYVEFDDLESLKEALTYDGALLGDRSLRVDIAEGRKQERGG 127

HSP 2 Score: 51.2174 bits (121), Expect = 5.566e-7
Identity = 21/34 (61.76%), Postives = 27/34 (79.41%), Query Frame = 2

Query:   68 QIPSEPPYLAYVGNLPKNTVQGDFEKIFQQCSFK 169
            ++P+EPPY AYVGNLP NTVQGD + IF+  S +
Sbjct:   37 ELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLSVR 70

[Close]

BLAST of Eukaryotic translation initiation factor 4H-like protein vs. Ensembl Sea Lamprey
Match: eif4h (eukaryotic translation initiation factor 4h [Source:ZFIN;Acc:ZDB-GENE-010328-19])

HSP 1 Score: 70.4774 bits (171), Expect = 8.328e-14
Identity = 30/67 (44.78%), Postives = 50/67 (74.63%), Query Frame = 1

Query:  145 NISTVFFQT*IVNTRMIRDRETDEFKGYAYVEFSDPQSLEEALSFNKARIGENILKVNVAEGRKKEQ 345
            +I  +F    + + R++RDR+TD+FKG+ YVEF D +SL+EAL+++ A   +  L+++VAEGRK+E+
Sbjct:   70 DIDQIFQDLRVRSIRLVRDRDTDKFKGFCYVEFDDIESLQEALTYDGALFMDRSLRIDVAEGRKQEK 136

HSP 2 Score: 50.8322 bits (120), Expect = 2.108e-7
Identity = 23/36 (63.89%), Postives = 29/36 (80.56%), Query Frame = 2

Query:   71 IPSEPPYLAYVGNLPKNTVQGDFEKIFQQCSFKLRS 178
            +P+EPPY AYVGNLP NTVQGD ++IFQ    ++RS
Sbjct:   49 LPTEPPYTAYVGNLPFNTVQGDIDQIFQ--DLRVRS 82

[Close]

BLAST of Eukaryotic translation initiation factor 4H-like protein vs. Ensembl Nematostella
Match: EDO39655 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S9E2])

HSP 1 Score: 68.5514 bits (166), Expect = 1.442e-14
Identity = 29/64 (45.31%), Postives = 45/64 (70.31%), Query Frame = 1

Query:  145 NISTVFFQT*IVNTRMIRDRETDEFKGYAYVEFSDPQSLEEALSFNKARIGENILKVNVAEGRK 336
            ++  +F    I N R++RD+ETD FKG+ YVEF DP+SL  AL FN A + +  ++V++AEG++
Sbjct:   30 DLDQIFADLRIRNVRLVRDKETDRFKGFCYVEFEDPESLTAALEFNGALVNDRQIRVDIAEGKR 93

HSP 2 Score: 46.9802 bits (110), Expect = 6.855e-7
Identity = 18/34 (52.94%), Postives = 26/34 (76.47%), Query Frame = 2

Query:   68 QIPSEPPYLAYVGNLPKNTVQGDFEKIFQQCSFK 169
            ++P+EPP+ A+VGNLP NTVQGD ++IF     +
Sbjct:    8 RMPTEPPFTAFVGNLPINTVQGDLDQIFADLRIR 41

[Close]

BLAST of Eukaryotic translation initiation factor 4H-like protein vs. Ensembl Medaka
Match: eif4h (eukaryotic translation initiation factor 4H [Source:NCBI gene;Acc:101167018])

HSP 1 Score: 74.3294 bits (181), Expect = 8.949e-15
Identity = 31/68 (45.59%), Postives = 53/68 (77.94%), Query Frame = 1

Query:  145 NISTVFFQT*IVNTRMIRDRETDEFKGYAYVEFSDPQSLEEALSFNKARIGENILKVNVAEGRKKEQN 348
            +I  +F +  I + R++RD+ETD+FKG+ YVEF D +SL+EAL+++ A +G+  L+V++AEGR++E+ 
Sbjct:   61 DIDIIFKELNIRSVRLVRDKETDKFKGFCYVEFEDLESLKEALTYDGALLGDRSLRVDIAEGRRQERG 128

[Close]

BLAST of Eukaryotic translation initiation factor 4H-like protein vs. Ensembl Medaka
Match: eif4h (eukaryotic translation initiation factor 4H [Source:NCBI gene;Acc:101167018])

HSP 1 Score: 74.3294 bits (181), Expect = 1.244e-14
Identity = 31/68 (45.59%), Postives = 53/68 (77.94%), Query Frame = 1

Query:  145 NISTVFFQT*IVNTRMIRDRETDEFKGYAYVEFSDPQSLEEALSFNKARIGENILKVNVAEGRKKEQN 348
            +I  +F +  I + R++RD+ETD+FKG+ YVEF D +SL+EAL+++ A +G+  L+V++AEGR++E+ 
Sbjct:   61 DIDIIFKELNIRSVRLVRDKETDKFKGFCYVEFEDLESLKEALTYDGALLGDRSLRVDIAEGRRQERG 128

[Close]

BLAST of Eukaryotic translation initiation factor 4H-like protein vs. Planmine SMEST
Match: SMESG000058217.1 (SMESG000058217.1)

HSP 1 Score: 435.647 bits (1119), Expect = 8.109e-153
Identity = 270/276 (97.83%), Postives = 272/276 (98.55%), Query Frame = 1

Query:  157 VFFQT*IVNTRMIRDRETDEFKGYAYVEFSDPQSLEEALSFNKARIGENILKVNVAEGRKKEQNNXXXXXXXXXXXXXXXXXXXXXXXXXFAQNNIDSQNEIVNRGNFFPSRGQGSRPNNQQYKNERYPNNQYKDTEGFNRVYHGARNRGGNNFSANRGAGNFYNDNRLRNDSERXXXXXXXXXXXXXXXXXXXXXAIAQKDRPRLRLLPRSIDAPLNEQIHSERTAAIFGLGKPREASPIREKRVSNLSGDSIENKSRPHSRVSEECSDNMHKDE 984
            +F Q  IVNTRMIRDRETDEFKGYAYVEFSDPQSL+EALSFNKARIGENILKVNVAEGRKKEQNNRTGQGHFRGRGRGNNRYGQRNQANGFAQNNIDSQNEIVNRGNFFPSRGQGSRPNNQQYKNERY NNQYKDTEGFNRVYHGARNRGGNNFSANRGAGNFYNDNRLRNDSERSVGSSNGGKSSNIPESSFSNSAIAQKDRPRLRLLPRSIDAPLNEQIHSERTAAIFGLGKPREASPIREKRVSNLSGDSIENKSRPHSRVSEECSDNMHKDE
Sbjct:   30 IFQQCSIVNTRMIRDRETDEFKGYAYVEFSDPQSLDEALSFNKARIGENILKVNVAEGRKKEQNNRTGQGHFRGRGRGNNRYGQRNQANGFAQNNIDSQNEIVNRGNFFPSRGQGSRPNNQQYKNERYSNNQYKDTEGFNRVYHGARNRGGNNFSANRGAGNFYNDNRLRNDSERSVGSSNGGKSSNIPESSFSNSAIAQKDRPRLRLLPRSIDAPLNEQIHSERTAAIFGLGKPREASPIREKRVSNLSGDSIENKSRPHSRVSEECSDNMHKDE 305

HSP 2 Score: 80.1073 bits (196), Expect = 1.718e-16
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 2

Query:   59 MANQIPSEPPYLAYVGNLPKNTVQGDFEKIFQQCS 163
            MANQIPSEPPYLAYVGNLPKNTVQGDFEKIFQQCS
Sbjct:    1 MANQIPSEPPYLAYVGNLPKNTVQGDFEKIFQQCS 35

The following BLAST results are available for this feature:

BLAST of Eukaryotic translation initiation factor 4H-like protein vs. Ensembl Human
BLAST of Eukaryotic translation initiation factor 4H-like protein vs. Ensembl Celegans
BLAST of Eukaryotic translation initiation factor 4H-like protein vs. Ensembl Fly
BLAST of Eukaryotic translation initiation factor 4H-like protein vs. Ensembl Zebrafish
BLAST of Eukaryotic translation initiation factor 4H-like protein vs. Ensembl Xenopus
BLAST of Eukaryotic translation initiation factor 4H-like protein vs. Ensembl Mouse
BLAST of Eukaryotic translation initiation factor 4H-like protein vs. UniProt/SwissProt
BLAST of Eukaryotic translation initiation factor 4H-like protein vs. TrEMBL
BLAST of Eukaryotic translation initiation factor 4H-like protein vs. Ensembl Cavefish
BLAST of Eukaryotic translation initiation factor 4H-like protein vs. Ensembl Sea Lamprey
BLAST of Eukaryotic translation initiation factor 4H-like protein vs. Ensembl Yeast
BLAST of Eukaryotic translation initiation factor 4H-like protein vs. Ensembl Nematostella
BLAST of Eukaryotic translation initiation factor 4H-like protein vs. Ensembl Medaka
BLAST of Eukaryotic translation initiation factor 4H-like protein vs. Planmine SMEST

BLAST of Eukaryotic translation initiation factor 4H-like protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 2


Match Name	E-value	Identity	Description
EIF4H	3.036e-13	43.94	eukaryotic translation initiation factor 4H [Sourc...	[more]
EIF4H	3.144e-13	43.94	eukaryotic translation initiation factor 4H [Sourc...	[more]

BLAST of Eukaryotic translation initiation factor 4H-like protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 1


Match Name	E-value	Identity	Description
drr-2	3.556e-6	40.00	Dietary Restriction Response (WT but not eat-2 lif...	[more]

BLAST of Eukaryotic translation initiation factor 4H-like protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 2


Match Name	E-value	Identity	Description
eIF4H2	6.151e-7	38.24	gene:FBgn0039797 transcript:FBtr0339513	[more]
eIF4H2	6.151e-7	38.24	gene:FBgn0039797 transcript:FBtr0085699	[more]

BLAST of Eukaryotic translation initiation factor 4H-like protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 3


Match Name	E-value	Identity	Description
eif4h	1.775e-11	43.33	eukaryotic translation initiation factor 4h [Sourc...	[more]
eif4h	3.083e-11	43.33	eukaryotic translation initiation factor 4h [Sourc...	[more]
eif4h	3.250e-11	43.33	eukaryotic translation initiation factor 4h [Sourc...	[more]

BLAST of Eukaryotic translation initiation factor 4H-like protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 2


Match Name	E-value	Identity	Description
tfec	4.303e-12	43.94	transcription factor EC [Source:Xenbase;Acc:XB-GEN...	[more]
tfec	4.637e-12	43.94	transcription factor EC [Source:Xenbase;Acc:XB-GEN...	[more]

BLAST of Eukaryotic translation initiation factor 4H-like protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 2


Match Name	E-value	Identity	Description
Eif4h	1.909e-13	43.94	eukaryotic translation initiation factor 4H [Sourc...	[more]
Eif4h	1.932e-13	43.94	eukaryotic translation initiation factor 4H [Sourc...	[more]

BLAST of Eukaryotic translation initiation factor 4H-like protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5


Match Name	E-value	Identity	Description
sp\|Q9WUK2\|IF4H_MOUSE	1.336e-12	43.94	Eukaryotic translation initiation factor 4H OS=Mus...	[more]
sp\|Q5XI72\|IF4H_RAT	1.400e-12	43.94	Eukaryotic translation initiation factor 4H OS=Rat...	[more]
sp\|Q1JPH6\|IF4H_BOVIN	1.431e-12	43.94	Eukaryotic translation initiation factor 4H OS=Bos...	[more]
sp\|Q15056\|IF4H_HUMAN	1.510e-12	43.94	Eukaryotic translation initiation factor 4H OS=Hom...	[more]
sp\|Q5RBR8\|IF4H_PONAB	1.558e-12	43.94	Eukaryotic translation initiation factor 4H OS=Pon...	[more]

BLAST of Eukaryotic translation initiation factor 4H-like protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
T1L2B2	6.624e-18	31.87	RRM domain-containing protein OS=Tetranychus urtic...	[more]
A0A443SWJ3	1.436e-17	31.60	Eukaryotic translation initiation factor 4H-like p...	[more]
V9L529	6.331e-16	42.03	Eukaryotic translation initiation factor 4H OS=Cal...	[more]
V9LA30	6.337e-16	42.03	Eukaryotic translation initiation factor 4H OS=Cal...	[more]
V4A9B2	8.179e-16	46.97	RRM domain-containing protein (Fragment) OS=Lottia...	[more]

BLAST of Eukaryotic translation initiation factor 4H-like protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 1


Match Name	E-value	Identity	Description
eif4h	7.392e-15	44.93	eukaryotic translation initiation factor 4H [Sourc...	[more]

BLAST of Eukaryotic translation initiation factor 4H-like protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 1


Match Name	E-value	Identity	Description
eif4h	8.328e-14	44.78	eukaryotic translation initiation factor 4h [Sourc...	[more]

BLAST of Eukaryotic translation initiation factor 4H-like protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Eukaryotic translation initiation factor 4H-like protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 1


Match Name	E-value	Identity	Description
EDO39655	1.442e-14	45.31	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]

BLAST of Eukaryotic translation initiation factor 4H-like protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 2


Match Name	E-value	Identity	Description
eif4h	8.949e-15	45.59	eukaryotic translation initiation factor 4H [Sourc...	[more]
eif4h	1.244e-14	45.59	eukaryotic translation initiation factor 4H [Sourc...	[more]

BLAST of Eukaryotic translation initiation factor 4H-like protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 1


Match Name	E-value	Identity	Description
SMESG000058217.1	8.109e-153	97.83	SMESG000058217.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediteranean smed_20140614 Interproscan	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Sequences

The following sequences are available for this feature:

transcript sequence
protein sequence

transcript sequence

>SMED30013357 ID=SMED30013357|Name=Eukaryotic translation initiation factor 4H-like protein|organism=Schmidtea mediterranea sexual|type=transcript|length=1295bp
CTCTTCCGATCTGTTTGTTATTTTATTCTGTAATCAGCGAAAATTGAAAA
TATCTGTCATGGCGAATCAAATTCCTAGTGAACCTCCTTATTTAGCATAT
GTTGGTAATTTACCTAAGAATACGGTACAAGGCGATTTTGAAAAAATATT
TCAACAGTGTTCTTTCAAACTTAGATCGTGAATACGCGGATGATTCGCGA
TAGAGAAACGGATGAATTTAAAGGTTACGCATATGTTGAGTTTTCAGATC
CTCAATCGTTAGAGGAAGCTTTAAGTTTTAATAAAGCGCGAATTGGGGAA
AATATTCTTAAAGTAAATGTCGCAGAAGGAAGAAAGAAGGAACAAAACAA
TAGAACTGGCCAAGGACATTTCAGAGGTCGAGGTCGCGGAAATAATCGAT
ATGGCCAAAGAAATCAAGCTAATGGATTTGCTCAAAATAATATTGATTCT
CAAAATGAAATAGTCAATCGAGGAAATTTTTTCCCATCACGAGGTCAAGG
TAGCAGGCCAAATAATCAACAATATAAAAATGAAAGATATCCTAATAATC
AATACAAAGACACTGAAGGTTTTAACCGCGTTTATCATGGTGCTAGAAAT
CGGGGAGGAAATAATTTTTCTGCTAACCGTGGCGCTGGCAATTTCTATAA
TGATAATCGTTTACGCAACGACAGTGAGAGAAGTGTTGGTAGTAGTAATG
GTGGGAAATCTAGTAATATACCGGAAAGTAGTTTTTCTAATAGTGCCATC
GCCCAAAAAGATAGACCAAGATTAAGGCTTCTTCCAAGATCTATAGACGC
TCCATTGAATGAGCAAATACATTCTGAGCGTACTGCTGCTATATTTGGGC
TAGGTAAGCCCAGAGAAGCTAGTCCGATTAGAGAAAAGCGTGTTTCGAAT
TTATCAGGCGATTCAATAGAAAATAAATCAAGACCACATAGTCGTGTATC
AGAAGAATGTTCAGACAATATGCATAAGGATGAATGATGGATTTTATTCA
TATATCTATGACAAAATTTAACTTTCAAAACAGTCTACTGTTGTTGTTGT
GTTTAATTGAATTTAGAATATTCCTCCATATCAATAATGGATGAAGTAAT
GGCGTTATATTTCCGTTACAATTGGTATATTGATTCGAATTGTACAAATT
TAGTATTTAATGTAAAATAAATAATTGAAAGAAATGCCTTAAATATATAC
ATATTTTTTGTTTTGTCTTGTTATCTTTAAATCTATTATGACAGATTAAA
TGTTATTTATTTTTCTTTGGTGGAATTATCTTGAGTGTATTCTGG

protein sequence of SMED30013357-orf-1

>SMED30013357-orf-1 ID=SMED30013357-orf-1|Name=SMED30013357-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=266bp
MIRDRETDEFKGYAYVEFSDPQSLEEALSFNKARIGENILKVNVAEGRKK
EQNNRTGQGHFRGRGRGNNRYGQRNQANGFAQNNIDSQNEIVNRGNFFPS
RGQGSRPNNQQYKNERYPNNQYKDTEGFNRVYHGARNRGGNNFSANRGAG
NFYNDNRLRNDSERSVGSSNGGKSSNIPESSFSNSAIAQKDRPRLRLLPR
SIDAPLNEQIHSERTAAIFGLGKPREASPIREKRVSNLSGDSIENKSRPH
SRVSEECSDNMHKDE*

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **molecular function**
Term	Definition
GO:0003723	RNA binding
GO:0000166	nucleotide binding
GO:0003676	nucleic acid binding
GO:0003743	translation initiation factor activity

Vocabulary: **Planarian Anatomy**
Term	Definition
PLANA:0000034	epidermis

Vocabulary: **INTERPRO**
Term	Definition
IPR035979	RBD_domain_sf
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom

Vocabulary: **biological process**
Term	Definition
GO:0006413	translational initiation

InterPro

Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 1..40 e-value: 2.2E-4 score: 21.0
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 1..47 score: 9.303
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 1..84 e-value: 3.9E-11 score: 45.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 139..156
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 47..69
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 163..188
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 98..125
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 245..265
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 138..188
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 220..265
None	No IPR available	PANTHER	PTHR23236:SF11	EUKARYOTIC TRANSLATION INITIATION FACTOR 4H	coord: 1..249
None	No IPR available	PANTHER	PTHR23236	EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H	coord: 1..249
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	SSF54928	RNA-binding domain, RBD	coord: 1..76

Main menu

Eukaryotic translation initiation factor 4H-like protein

Zeng et. al., 2018

▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Davies et. al., 2017

PAGE et. al., 2020

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 4

Owlery

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