SMED30013281

Overview
NameSMED30013281
Smed IDSMED30013281
Length (bp)1861
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30013281 (SMED30013281) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30013281 (SMED30013281) in cells (dots) of each of the 12 neoblast clusters.

 

back to top

 

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

back to top
Anatomical Expression

PAGE et. al., 2020



SMED30013281

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 1

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
parenchymaSMED30013281 dd_Smed_v4_34751_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30013281 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.000426:48751..50346 +7980
v31.000097:28562..30235 -5665
Homology
[Close]
BLAST of SMED30013281 vs. Planmine SMEST
Match: SMESG000025524.1 (SMESG000025524.1)

HSP 1 Score: 167.162 bits (422), Expect = 2.359e-52
Identity = 103/157 (65.61%), Postives = 119/157 (75.80%), Query Frame = -2 
Query: 1390 TGSTLNEKVNKRKSMLNYIMILREASAIEFVTINAIEEDIEIIGQNLNPILGTMERGHIXXXXXXXXXXXXKFDKEIIDVNKFESNKNILLKRPINSENAFPKMIKALLKRGKIKFTDNKRESDRIGFRKEELQTLVGESHRIHQISSGIKKEIDNI 1860
            TGSTLNEK NK K+MLNYIM+ REA AI+FVTINAI++DIEIIGQNLNPIL  +ERG+ +AA K+IKW+KRK D EIIDVNKFESN+NIL+KR + SE A PK IKAL             E +RI  RKEEL TLVGE HRI    SG K+EID+I
Sbjct:  536 TGSTLNEKDNKGKTMLNYIMMSREARAIDFVTINAIQDDIEIIGQNLNPILEAIERGYEEAAEKLIKWRKRKSDNEIIDVNKFESNENILVKRAMKSEYALPKTIKAL-------------EPERIVSRKEELDTLVGEWHRIQGKPSGKKREIDDI 679

HSP 2 Score: 58.9214 bits (141), Expect = 2.359e-52
Identity = 49/87 (56.32%), Postives = 56/87 (64.37%), Query Frame = -1 
Query: 1076 NVEDNSIEKARCXXXXXXXXXXXXXXXXXXXXXXXXXXDINKNQDSVTYKEIRQQPKSKNDDYQKIPRDEENTDKNYWKQMIDSQKF 1336
            N EDN IEKARC+K QDKK+D++ +    D N+        K Q SV YKEI QQ K  N D QK  +DEENTDK  WKQMIDSQK 
Sbjct:  698 NAEDNRIEKARCNKNQDKKEDDNEEGENRDRNK--------KKQISVAYKEIGQQSKPNNVDNQKRSKDEENTDKICWKQMIDSQKI 776
[Close]
BLAST of SMED30013281 vs. Planmine SMEST
Match: SMESG000050768.1 (SMESG000050768.1)

HSP 1 Score: 157.918 bits (398), Expect = 1.333e-48
Identity = 100/158 (63.29%), Postives = 117/158 (74.05%), Query Frame = -2 
Query: 1390 TGSTLNEKVNKRKSMLNYIMILREASAIEFVTINAIEEDIEIIGQNLNPILGTMERGHIXXXXXXXXXXXXKFDKEIIDVNKFESNKNILLKRPINSENAFPKMIKALLKRGKIKFTDNKRESDRIGFRKEELQTLVGESHRIHQISSGIKK-EIDNI 1860
            TGSTLNE  NK K+MLNY+M+ REA AI+ VTIN I+EDIE+IGQNLNPILG + RG+ +AAAK+I W+KRK D EIIDVNKFESN+NIL+KR + SE A PK IKAL             E +RI  RKEEL+TLVGE HRI    SG KK EID+I
Sbjct:  276 TGSTLNENDNKGKTMLNYVMMSREARAIDLVTINGIKEDIEVIGQNLNPILGAIGRGYDEAAAKLITWRKRKSDNEIIDVNKFESNENILVKRAMKSEYALPKTIKAL-------------EPERIMPRKEELETLVGEWHRIQGKPSGKKKQEIDDI 420

HSP 2 Score: 55.4546 bits (132), Expect = 1.333e-48
Identity = 47/87 (54.02%), Postives = 58/87 (66.67%), Query Frame = -1 
Query: 1076 NVEDNSIEKARCXXXXXXXXXXXXXXXXXXXXXXXXXXDINKNQDSVTYKEIRQQPKSKNDDYQKIPRDEENTDKNYWKQMIDSQKF 1336
            N EDN IEKA+C+K QDKK+D++ +R   D N+        + Q+ V YKEIRQQ K  N D QK  +DEENTDK  WKQM+DSQK 
Sbjct:  439 NAEDNRIEKAQCNKNQDKKEDDNEERENRDRNK--------ERQNPVAYKEIRQQSKPNNIDDQKRSKDEENTDKICWKQMMDSQKI 517
[Close]
BLAST of SMED30013281 vs. Planmine SMEST
Match: SMESG000028578.1 (SMESG000028578.1)

HSP 1 Score: 149.828 bits (377), Expect = 2.280e-47
Identity = 96/157 (61.15%), Postives = 116/157 (73.89%), Query Frame = -2 
Query: 1390 TGSTLNEKVNKRKSMLNYIMILREASAIEFVTINAIEEDIEIIGQNLNPILGTMERGHIXXXXXXXXXXXXKFDKEIIDVNKFESNKNILLKRPINSENAFPKMIKALLKRGKIKFTDNKRESDRIGFRKEELQTLVGESHRIHQISSGIKKEIDNI 1860
            TGSTLNEK NK K+MLNYIM+  E  AI+FVTIN I++ I+IIGQNLNPIL  +ERG+ +AAAK+IKW+KRK D EIIDVNKFESN+N+L+KR + S+ A PK IKAL             E +RI  RKEEL+TLV E HRI    SG K+EID+I
Sbjct:  293 TGSTLNEKDNKGKTMLNYIMMSLETRAIDFVTINGIQDYIQIIGQNLNPILEAIERGYDEAAAKLIKWRKRKSDNEIIDVNKFESNENVLVKRAMKSKYALPKTIKAL-------------EPERIVSRKEELETLVVEWHRIQGKPSGKKQEIDDI 436

HSP 2 Score: 59.6918 bits (143), Expect = 2.280e-47
Identity = 49/88 (55.68%), Postives = 56/88 (63.64%), Query Frame = -1 
Query: 1073 NVEDNSIEKARCXXXXXXXXXXXXXXXXXXXXXXXXXXDINKNQDSVTYKEIRQQPKSKNDDYQKIPRDEENTDKNYWKQMIDSQKFR 1336
            N EDN IEKARC+K QD K+DE+ +    D N+        K Q SV YKEI QQ K  N D QK  +DEENTDK  WKQMIDSQK +
Sbjct:  455 NAEDNRIEKARCNKNQDNKEDENEEGENRDRNK--------KKQISVAYKEIGQQSKPNNVDNQKRSKDEENTDKICWKQMIDSQKIQ 534
[Close]
BLAST of SMED30013281 vs. Planmine SMEST
Match: SMESG000027747.1 (SMESG000027747.1)

HSP 1 Score: 120.168 bits (300), Expect = 5.553e-47
Identity = 82/123 (66.67%), Postives = 98/123 (79.67%), Query Frame = -1 
Query:  311 KEREKYCKDQKKDEGNLKDNEXXXXXXXXXXXXXXXXXXXXKLRKAKTKNKP*RLDDLRKEVLIIVVADSRKYETT*KLYEKLITKIFRISRNSRRKVNGIEIKEEKNMAPRLLTRNNTESIY 679
            +++EKYCK+QK DE NLKDNET  T +RTT +SAKSTQSS+KLRK  T NKP R+DD+R EV I VV D+ KYET  K+  KL TK+ +I +NS+RKVNG EIKEEKNM PRLL RNNT+SIY
Sbjct:  292 QKKEKYCKNQKSDEENLKDNETRKTISRTTNESAKSTQSSTKLRKTTTPNKPQRMDDVRNEVSISVVTDAWKYETIRKVQGKLFTKLSKIVKNSKRKVNGREIKEEKNMTPRLL-RNNTKSIY 413

HSP 2 Score: 72.0182 bits (175), Expect = 5.553e-47
Identity = 38/51 (74.51%), Postives = 42/51 (82.35%), Query Frame = -3 
Query:  174 YRIYI*QGLSRNFPQRGVRNNKGKTTKESATRNQADSRKVISKDDRHSSEK 326
            Y+I+  QGLSRN  QRGVRNNKG+TTKES TRNQ DSRKVISK + H SEK
Sbjct:  413 YQIW--QGLSRNSSQRGVRNNKGETTKESPTRNQTDSRKVISKYNGHLSEK 461

HSP 3 Score: 29.261 bits (64), Expect = 5.553e-47
Identity = 24/72 (33.33%), Postives = 33/72 (45.83%), Query Frame = -2 
Query:   25 LIRKGKNHLLAVIKIV*N-----HKTSRIXXXXXXXXXXXXXKS-------------QMRVTGKYKRKPMGK 186
            L  K  NHLL + KIV N      KT++++ T +       +               Q+R TGKYK+KPM K
Sbjct:  458 LSEKETNHLLEIFKIVQNLENPSKKTTKLENTTSITVKLVAISEIVTNVIVMWMIIRQVRATGKYKQKPMKK 529

HSP 4 Score: 27.335 bits (59), Expect = 5.553e-47
Identity = 9/9 (100.00%), Postives = 9/9 (100.00%), Query Frame = -1 
Query:    2 KRMWPKPEN 28
            KRMWPKPEN
Sbjct:  529 KRMWPKPEN 537

HSP 5 Score: 164.851 bits (416), Expect = 1.339e-43
Identity = 93/157 (59.24%), Postives = 110/157 (70.06%), Query Frame = -2 
Query: 1390 TGSTLNEKVNKRKSMLNYIMILREASAIEFVTINAIEEDIEIIGQNLNPILGTMERGHIXXXXXXXXXXXXKFDKEIIDVNKFESNKNILLKRPINSENAFPKMIKALLKRGKIKFTDNKRESDRIGFRKEELQTLVGESHRIHQISSGIKKEIDNI 1860
            TGSTLNEK NK K+MLNYIM+LREASAIEF+TINAI++DIEIIGQNLNPIL  +ER               ++D+               L + INSE A PK IKALLKR +IKFTDNKRE +RIG RKEEL+TLV E HRI + SSG K+E+D+I
Sbjct:  115 TGSTLNEKDNKGKTMLNYIMMLREASAIEFITINAIQDDIEIIGQNLNPILEAIER---------------EYDEAAAK-----------LIKAINSEYALPKTIKALLKRREIKFTDNKREHERIGSRKEELETLVEEWHRIQRKSSGRKQEVDDI 245
[Close]
BLAST of SMED30013281 vs. Planmine SMEST
Match: SMESG000027747.1 (SMESG000027747.1)

HSP 1 Score: 120.168 bits (300), Expect = 6.752e-47
Identity = 82/123 (66.67%), Postives = 98/123 (79.67%), Query Frame = -1 
Query:  311 KEREKYCKDQKKDEGNLKDNEXXXXXXXXXXXXXXXXXXXXKLRKAKTKNKP*RLDDLRKEVLIIVVADSRKYETT*KLYEKLITKIFRISRNSRRKVNGIEIKEEKNMAPRLLTRNNTESIY 679
            +++EKYCK+QK DE NLKDNET  T +RTT +SAKSTQSS+KLRK  T NKP R+DD+R EV I VV D+ KYET  K+  KL TK+ +I +NS+RKVNG EIKEEKNM PRLL RNNT+SIY
Sbjct:  298 QKKEKYCKNQKSDEENLKDNETRKTISRTTNESAKSTQSSTKLRKTTTPNKPQRMDDVRNEVSISVVTDAWKYETIRKVQGKLFTKLSKIVKNSKRKVNGREIKEEKNMTPRLL-RNNTKSIY 419

HSP 2 Score: 72.0182 bits (175), Expect = 6.752e-47
Identity = 38/51 (74.51%), Postives = 42/51 (82.35%), Query Frame = -3 
Query:  174 YRIYI*QGLSRNFPQRGVRNNKGKTTKESATRNQADSRKVISKDDRHSSEK 326
            Y+I+  QGLSRN  QRGVRNNKG+TTKES TRNQ DSRKVISK + H SEK
Sbjct:  419 YQIW--QGLSRNSSQRGVRNNKGETTKESPTRNQTDSRKVISKYNGHLSEK 467

HSP 3 Score: 28.8758 bits (63), Expect = 6.752e-47
Identity = 24/72 (33.33%), Postives = 33/72 (45.83%), Query Frame = -2 
Query:   25 LIRKGKNHLLAVIKIV*N-----HKTSRIXXXXXXXXXXXXXKS-------------QMRVTGKYKRKPMGK 186
            L  K  NHLL + KIV N      KT++++ T +       +               Q+R TGKYK+KPM K
Sbjct:  464 LSEKETNHLLEIFKIVQNLENPSKKTTKLENTTSITVKLVAISEIVTNVIVMWMIIRQVRATGKYKQKPMKK 535

HSP 4 Score: 27.335 bits (59), Expect = 6.752e-47
Identity = 9/9 (100.00%), Postives = 9/9 (100.00%), Query Frame = -1 
Query:    2 KRMWPKPEN 28
            KRMWPKPEN
Sbjct:  535 KRMWPKPEN 543

HSP 5 Score: 164.851 bits (416), Expect = 1.681e-43
Identity = 93/157 (59.24%), Postives = 110/157 (70.06%), Query Frame = -2 
Query: 1390 TGSTLNEKVNKRKSMLNYIMILREASAIEFVTINAIEEDIEIIGQNLNPILGTMERGHIXXXXXXXXXXXXKFDKEIIDVNKFESNKNILLKRPINSENAFPKMIKALLKRGKIKFTDNKRESDRIGFRKEELQTLVGESHRIHQISSGIKKEIDNI 1860
            TGSTLNEK NK K+MLNYIM+LREASAIEF+TINAI++DIEIIGQNLNPIL  +ER               ++D+               L + INSE A PK IKALLKR +IKFTDNKRE +RIG RKEEL+TLV E HRI + SSG K+E+D+I
Sbjct:  121 TGSTLNEKDNKGKTMLNYIMMLREASAIEFITINAIQDDIEIIGQNLNPILEAIER---------------EYDEAAAK-----------LIKAINSEYALPKTIKALLKRREIKFTDNKREHERIGSRKEELETLVEEWHRIQRKSSGRKQEVDDI 251
The following BLAST results are available for this feature:
BLAST of SMED30013281 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30013281 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30013281 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30013281 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30013281 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30013281 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30013281 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30013281 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30013281 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30013281 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30013281 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30013281 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30013281 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30013281 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000025524.12.359e-5265.61SMESG000025524.1[more]
SMESG000050768.11.333e-4863.29SMESG000050768.1[more]
SMESG000028578.12.280e-4761.15SMESG000028578.1[more]
SMESG000027747.15.553e-4766.67SMESG000027747.1[more]
SMESG000027747.16.752e-4766.67SMESG000027747.1[more]
back to top
Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30013281 ID=SMED30013281|Name=SMED30013281|organism=Schmidtea mediterranea sexual|type=transcript|length=1861bp
GGTTCTCTGGTTTTGGCCACATTCTTTTCCCATAGGTTTCCGTTTGTACT
TTCCAGTTACTCTCATTTGCGATTTAACTGTGGTTGAAGTTGCATTTTCT
GTTTTCGTTGTCTTTATTCTTGAGGTTTTGTGGTTTTAAACTATCTTAAT
TACTGCTAATAAATGATTTTTCCCTTTTCTGATGAGTGACGATCGTCTTT
GCTTATTACTTTCCTACTATCGGCTTGGTTCCTTGTTGCACTTTCTTTCG
TAGTTTTACCTTTGTTGTTTCTTACTCCTCTTTGAGGAAAGTTTCGGGAT
AATCCCTGTCATATATAGATTCTGTATTATTTCTTGTTAGCAAACGTGGT
GCCATGTTCTTCTCCTCTTTTATTTCTATGCCGTTAACTTTTCTTCTTGA
ATTCCTGCTTATCCTGAATATTTTTGTGATTAGCTTTTCATATAGTTTCT
ATGTAGTTTCGTATTTCCGTGAGTCGGCCACTACAATGATTAACACTTCT
TTTCTGAGATCATCCAGTCTTTAGGGTTTATTTTTCGTTTTTGCTTTTCG
TAGTTTTGAACTTGATTGCGTTGATTTTGCTGACTTTTTTGTTGTTCTTG
TAGTTGTTTAATTCGTTTCATTGTCCTTTAGATTTCCTTCGTCTTTTTTC
TGGTCTTTGCAATATTTTTCTCTTTCTTTGTTGGTTTTTTCACCGTTGTT
GTGCATTTTTGCTTCGATTATACTTGATGTTTTTGTCACTTCTTTGAACC
GTTTTCCAAAGTCTTTATCGTTTTCTATTTTTGGTTATCTTCTCCCTGTA
TACAAATCGTATTCGCCGTATTTTCCATCATGTTTCTGAACGAATAAAAT
TTATTTTGGTTTAGTTTCCTCTTTTCGCAGTGTGTCGCTAGTTTCTTTTT
CATAGTTATGCAAGTAATGTTGATTTGTTGTTTCTAAGCATTTACGACTA
TTATTCCGTTGTTCTGGATCGCTTTTCTAATTCTTAATTTTCCCAAAAGG
TATCCATCCGTTAAGCTGACTAACGTCATTAATATCAATAATCCTTGTAA
TCCTTGTATTGAGTTGGTCGATTCGGAATTTCTGAGAGTCTATCATCTGT
TTCCAATAATTTTTATCTGTGTTTTCTTCATCTCTTGGAATTTTTTGATA
GTCGTCATTCTTTGACTTTGGTTGTTGTCGTATTTCCTTATATGTTACTG
AATCTTGATTTTTATTTATATCTTGGTTTGCTTCCTCTTCGTTATCATCT
TCTTTGTTCCTGTCGTTGTCCTCGTCGTCCTTTTTGTCTTGGCCTTTATC
ACATCGGGCCTTCTCAATACTGTTGTCCTCGACATTTATTTCTTTGATTA
TCTCCTTATACATCTTGATCATCATTTTCTTCTATTTCTGATGTTGTCAA
TCTCTTTCTTTATACCGCTAGATATTTGGTGTATTCGGTGCGATTCTCCT
ACTAAGGTTTGTAATTCTTCCTTTCTGAACCCTATTCTGTCAGACTCTCT
TTTGTTGTCAGTGAACTTTATTTTTCCTCTTTTTAGCAAAGCTTTTATCA
TTTTTGGGAATGCATTCTCGGAATTTATTGGTCTTTTTAGTAATATATTT
TTATTGCTTTCGAATTTGTTAACGTCTATGATTTCTTTGTCGAACTTTCT
TTTTTTCCACTTGATCATTTTTGCTGCTGCTTTAATGTGTCCCCTTTCCA
TTGTTCCCAGGATTGGATTTAGGTTTTGTCCTATTATTTCGATGTCTTCC
TCTATTGCATTTATTGTGACGAACTCTATTGCACTCGCTTCCCTCAATAT
CATGATATAATTTAACATCGATTTTCTTTTATTGACTTTCTCATTTAGAG
TTGATCCTGTT
back to top

protein sequence of SMED30013281-orf-1

>SMED30013281-orf-1 ID=SMED30013281-orf-1|Name=SMED30013281-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=163bp
TGSTLNEKVNKRKSMLNYIMILREASAIEFVTINAIEEDIEIIGQNLNPI
LGTMERGHIKAAAKMIKWKKRKFDKEIIDVNKFESNKNILLKRPINSENA
FPKMIKALLKRGKIKFTDNKRESDRIGFRKEELQTLVGESHRIHQISSGI
KKEIDNIRNRRK*
back to top

protein sequence of SMED30013281-orf-2

>SMED30013281-orf-2 ID=SMED30013281-orf-2|Name=SMED30013281-orf-2|organism=Schmidtea mediterranea sexual|type=polypeptide|length=133bp
MMIKMYKEIIKEINVEDNSIEKARCDKGQDKKDDEDNDRNKEDDNEEEAN
QDINKNQDSVTYKEIRQQPKSKNDDYQKIPRDEENTDKNYWKQMIDSQKF
RIDQLNTRITRIIDINDVSQLNGWIPFGKIKN*
back to top
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableTMHMMTMhelixcoord: 51..73
NoneNo IPR availableTMHMMTMhelixcoord: 86..105
NoneNo IPR availableTMHMMTMhelixcoord: 115..137