SMED30013262
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30013262 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 6
Alignments
SMED30013262 aligns in the following genomic locations:
Homology
BLAST of SMED30013262 vs. TrEMBL
Match: A0A0X3PFJ3 (Uncharacterized protein OS=Schistocephalus solidus OX=70667 GN=TR93133 PE=4 SV=1) HSP 1 Score: 171.4 bits (433), Expect = 2.173e-46 Identity = 93/303 (30.69%), Postives = 164/303 (54.13%), Query Frame = 1 Query: 43 CTR--WKDCPGFVDPFCVVKYCVSLLSRDVYPNMGLAKFDVECSK---------SKPKDPCDGIKIYLDELEEDPIIDQEVRYYICQPCKDEMKRTINKSSKNALKFMLQYLKLRGAFILWKVDNYIGSLNSISQARCMIRYATSYLEGLPELDYCSAVCLGRYLQYVMSVSYAHEMFFMKEILSKLYGPIF--IELSVILELSNNIPPAERIEYAVSIFEHMLETCPWYQYSPTESVGKSLYPSKKREFTYKYEEL-AKYIYDKTTLPNSFKQNLGEVMYQNKLINPLEHLRGDNLRTEDYC 909 C R W D PGF DP VV+ C+ +L+R+VYP A + + PK C GI +YL+ + I++ V+ YI PC+ E++ T+ + AL F+L YLK RG F W + N + ++ RC+ +A L LP+LD+ +A+ +GR+L Y+++VS+ H + ++K I++K++GP++ +EL + + E+++ A +F MLET W P E V +++ P + +YE + +Y+ D+ P N+G++M+ N I + ++ D++R ++ C Sbjct: 12 CVRPEWSDKPGFWDPLAVVEVCIPILAREVYP----ANHTIHSERPSALHTRTVEHPKKLCRGISMYLEAWQHTEGIEKAVQRYIYYPCQMELEETVMNKPERALAFILAYLKYRGPFFTWVMRN---GEDGVATGRCLSTHAQFMLTHLPDLDFSAAIHIGRHLNYLLAVSHGHNIHYLKSIIAKVWGPLYLHVELERVTYPMKRLSEPEKVQLATEVFSRMLETVTWSSLKPFEGVRRNI-PQDRHARLIRYENVTGQYVQDQLKEPKFNGTNIGDLMH-NAAIQ--QAMKKDHMRAQEPC 303
BLAST of SMED30013262 vs. TrEMBL
Match: A0A4E0RC76 (Uncharacterized protein OS=Fasciola hepatica OX=6192 GN=D915_004151 PE=4 SV=1) HSP 1 Score: 153.295 bits (386), Expect = 1.038e-39 Identity = 80/232 (34.48%), Postives = 139/232 (59.91%), Query Frame = 1 Query: 40 LCTRWKDCPGFVDPFCVVKYCVSLLSRDVYPNMGLAKFDVECSKSKPKDPCDGIKIYLDELEEDPIIDQEVRYYICQPCKDEMKRTINKSSKNALKFMLQYLKLRGAFILWKVDNYIGSLNSISQARCMIRYATSYLEGLPELDYCSAVCLGRYLQYVMSVSYAHEMFFMKEILSKLYGPIFIE--LSVILELSNNIPPAERIEYAVSIFEHMLETCPWYQYSPTESVGKSL 729 L +++ PGF+DPF VV+ C+++L V+ + K + SK+ + C+GI+IYL+ +P +D+ V YI PC E++ +N K AL+F++ YL+ RG I W++ + RCM +L+ L +L+Y SAV +GRYLQY+++V Y+H+MF+ + IL+K++GPIF+ S L + + E + A+++F+ ++E+ PW ++P ES K++ Sbjct: 27 LTEKYERNPGFLDPFAVVEVCLAVLRSGVHVSANPWK---DGSKND-GNLCEGIRIYLENWPLNPDLDRMVSKYIRFPCTTELQSYVNNDQKKALQFLVSYLRKRGPIINWQIRPGTDEV----MGRCMKTVLAGHLQMLTDLEYTSAVMIGRYLQYLITVGYSHQMFYFRTILAKVWGPIFLRPCYSKEYRLCHPLTGEENVNLAITLFDRIIESAPWSTFTPFESAQKAI 250
BLAST of SMED30013262 vs. TrEMBL
Match: A0A504YIX7 (Uncharacterized protein OS=Fasciola gigantica OX=46835 GN=FGIG_04228 PE=4 SV=1) HSP 1 Score: 153.295 bits (386), Expect = 1.153e-39 Identity = 80/232 (34.48%), Postives = 136/232 (58.62%), Query Frame = 1 Query: 40 LCTRWKDCPGFVDPFCVVKYCVSLLSRDVYPNMGLAKFDVECSKSKPKDPCDGIKIYLDELEEDPIIDQEVRYYICQPCKDEMKRTINKSSKNALKFMLQYLKLRGAFILWKVDNYIGSLNSISQARCMIRYATSYLEGLPELDYCSAVCLGRYLQYVMSVSYAHEMFFMKEILSKLYGPIFIE--LSVILELSNNIPPAERIEYAVSIFEHMLETCPWYQYSPTESVGKSL 729 L +++ PGF+DPF VV+ C+++L V+ + K + + C+GI+IYL+ +P +D+ V YI PC E++ IN K AL+F++ YL+ RG I W++ + RCM +L+ L +L+Y SAV +GRYLQY+++V Y+H+MF+ + IL+K++GPIF+ S L + + E + A+++F+ ++ET PW ++P ES K++ Sbjct: 27 LTEKFERNPGFLDPFAVVEVCLAVLRSGVHVSANPWKDGYK----NDGNLCEGIRIYLENWPLNPDLDRVVSKYIRFPCTTELQSYINNDQKKALQFLVSYLRKRGPIINWQIRPGTDEV----MGRCMKTVLAGHLQMLSDLEYTSAVMIGRYLQYLITVGYSHQMFYFRTILAKVWGPIFLRPCYSKEYRLCHPLTGEENVNLAITLFDRIIETAPWSTFTPFESAQKAI 250
BLAST of SMED30013262 vs. TrEMBL
Match: A0A068XVV1 (Uncharacterized protein OS=Echinococcus multilocularis OX=6211 GN=EmuJ_000358400 PE=4 SV=1) HSP 1 Score: 151.754 bits (382), Expect = 8.207e-39 Identity = 104/337 (30.86%), Postives = 162/337 (48.07%), Query Frame = 1 Query: 52 WKDCPGFVDPFCVVKYCVSLLSRDVYP-----NMGLAKFDVECSKSKPK-DPCDGIKIYLDELEEDPIIDQEVRYYICQPCKDEMKRTINKSSKNALKFMLQYLKLRGAFILWKVDNYIGSLNSISQARCMIRYATSYLEGLPELDYCSAVCLGRYLQYVMSVSYAHEMFFMKEILSKLYGPIFIELSVILELSNNIPP------AERIEYAVSIFEHMLETCPWYQYSPTESVGKSLYPSKKREFTYK-------YEELAK-YIYDKTTLPNSFKQNLGEVMYQNKLIN---------PLEHLRGDNLRTEDYC-YHPPSENDGRYPPDKCQIDYS 972 W PGF DP V + C+ +L+R VY ++ A FD C + P D C GI +Y + + +++ V+ YIC PCK E+ I+ + AL +L YLK RG F++W Y G + + R + R +L LPE++ +AV +GRYL +++ ++Y H M M++ L+ ++GPIF++ +E + +I P E+ + AV IF MLET PW+ +P + V S+ P+ F +EL K + + K L + L E M + K + E + T D C YH R PPD C + Y Sbjct: 30 WCSKPGFWDPHAVTEICLPILARSVYSATRTMHLEKASFDEPCGRRIPDGDICRGITMYTEPWHREDCVERAVQRYICFPCKMELTECIDLRPERALAVLLSYLKHRGPFLVWI---YRGKGTAYNIGRHLPRTVIQFLTHLPEVEMSAAVAIGRYLSHLLRIAYGHRMMNMRKTLATVWGPIFLK----VEPATDIKPPIRMTECEKFDAAVEIFSRMLETVPWHTVTPFQKVTLSMLPNDPCSFMTTNSIRNDCVQELMKEHPHAKGALADIL---LSEAMEEAKRVEEAKEEAKICETEVEKDLGCVTNDVCVYH--EAPLSRCPPDTCDLTYG 354
BLAST of SMED30013262 vs. TrEMBL
Match: U6JE76 (Uncharacterized protein OS=Echinococcus granulosus OX=6210 GN=EGR_09868 PE=4 SV=1) HSP 1 Score: 148.673 bits (374), Expect = 1.165e-37 Identity = 82/246 (33.33%), Postives = 132/246 (53.66%), Query Frame = 1 Query: 52 WKDCPGFVDPFCVVKYCVSLLSRDVYP-----NMGLAKFDVECSKSKPK-DPCDGIKIYLDELEEDPIIDQEVRYYICQPCKDEMKRTINKSSKNALKFMLQYLKLRGAFILWKVDNYIGSLNSISQARCMIRYATSYLEGLPELDYCSAVCLGRYLQYVMSVSYAHEMFFMKEILSKLYGPIFIELSVILELSNNIPP------AERIEYAVSIFEHMLETCPWYQYSPTESVGKSLYPSKKREF 753 W PG DP V + C+ +L+R VY ++ A FD C + P D C GI +Y + + +++ V+ YIC PCK E+ I+ + AL +L YLK RG F++W Y G + + R + R +L LPE++ +AV +GRYL +++ ++Y H M M++ L+ ++GPIF++ +E + +I P E+ + AV IF MLET PW+ +P + V S+ P+ F Sbjct: 30 WCSKPGLWDPHAVTEICLPILARSVYSATRTMHLEKASFDEPCGRRIPDGDICRGITMYTEPWHREDCVERAVQRYICFPCKMELTECIDLRPERALAVLLSYLKHRGPFLVWI---YRGKETAYNIGRHLPRTVIQFLTHLPEVEMSAAVAIGRYLSHLLRIAYGHRMMNMRKTLATVWGPIFLK----VEPATDIKPPIRMTECEKFDAAVEIFSRMLETVPWHTVTPFQKVTLSMLPNDPCSF 268
BLAST of SMED30013262 vs. Planmine SMEST
Match: SMESG000060779.1 (SMESG000060779.1) HSP 1 Score: 620.157 bits (1598), Expect = 0.000e+0 Identity = 305/324 (94.14%), Postives = 306/324 (94.44%), Query Frame = 1 Query: 34 MALCTRWKDCPGFVDPFCVVKYCVSLLSRDVYPNMGLAKFDVECSKSKPKDPCDGIKIYLDELEEDPIIDQEVRYYICQPCKDEMKRTINKSSKNALKFMLQYLKLRGAFILWKVDNYIGSLNSISQARCMIRYATSYLEGLPELDYCSAVCLGRYLQYVMSVSYAHEMFFMKEILSKLYGPIFIELSVILELSNNIPPAERIEYAVSIFEHMLETCPWYQYSPTESVGKSLYPSKKREFTYKYEELAKYIYDKTTLPNSFKQNLGEVMYQNKLINPLEHLRGDNLRTEDYCYHPPSENDGRYPPDKCQIDYSQFNSSLNKALA 1005 MALCTRWKDCPGFVDPFCVVKYCVSLLSRDVYPNMGLAKFDVECSKSKPKDPCDGIKIYLDELEEDPIIDQEVRYYICQPCKDEMKRTINKSSKNALKFMLQYLKLRGAFILWKVDNYIGSLNSISQARCMIRYAT RYLQYVMSVSYAHEMFFMKEILSKLYGPIFIELSVILELSNNIPPA+RIEYAVSIFEHMLETCPWYQYSPTESVGKSLYPSKKREFTYKYEELAKYIYDKTTLPNSFKQNLGEVMYQNKLINPLEHLRGDNLRTEDYCYHPPSENDGRYPPDKCQIDYSQFNSSLNKALA Sbjct: 1 MALCTRWKDCPGFVDPFCVVKYCVSLLSRDVYPNMGLAKFDVECSKSKPKDPCDGIKIYLDELEEDPIIDQEVRYYICQPCKDEMKRTINKSSKNALKFMLQYLKLRGAFILWKVDNYIGSLNSISQARCMIRYATR-----------------RYLQYVMSVSYAHEMFFMKEILSKLYGPIFIELSVILELSNNIPPAKRIEYAVSIFEHMLETCPWYQYSPTESVGKSLYPSKKREFTYKYEELAKYIYDKTTLPNSFKQNLGEVMYQNKLINPLEHLRGDNLRTEDYCYHPPSENDGRYPPDKCQIDYSQFNSSLNKALA 307 The following BLAST results are available for this feature:
BLAST of SMED30013262 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of SMED30013262 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of SMED30013262 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of SMED30013262 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of SMED30013262 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of SMED30013262 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of SMED30013262 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 0
BLAST of SMED30013262 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of SMED30013262 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 0
BLAST of SMED30013262 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of SMED30013262 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of SMED30013262 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of SMED30013262 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of SMED30013262 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 1
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30013262 ID=SMED30013262|Name=SMED30013262|organism=Schmidtea mediterranea sexual|type=transcript|length=1079bpback to top protein sequence of SMED30013262-orf-1 >SMED30013262-orf-1 ID=SMED30013262-orf-1|Name=SMED30013262-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=325bp MALCTRWKDCPGFVDPFCVVKYCVSLLSRDVYPNMGLAKFDVECSKSKPKback to top Annotated Terms
The following terms have been associated with this transcript:
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