Retrovirus-related Pol polyprotein from transposon
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Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30013261 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 10
Homology
BLAST of Retrovirus-related Pol polyprotein from transposon vs. Ensembl Human
Match: RTL1 (retrotransposon Gag like 1 [Source:HGNC Symbol;Acc:HGNC:14665]) HSP 1 Score: 69.3218 bits (168), Expect = 9.152e-11 Identity = 64/272 (23.53%), Postives = 111/272 (40.81%), Query Frame = 1
Query: 5008 KSPYSSPLVVVAKR-DGSIRLCNDYRKLNEQTVSDNHPLPLLDYIYDKMKNSRLFTVMDAQKGFYQIKMSENSIPMTGFSTDDDHFEYLMMTFGL-----KGAPPTFLRAMNIMLMDAHH----------AMVYIDDIFIFSEDLNKHLEHLEDIYKRLIMANLKVKPSKCKWAEQEVIYVEHVISHDCVKPDPPNTEKVRNFPQPTNVKQIKGFLGLTGYYPQFIRNFSAIAFPLTVLEKKGVKFTWGNEQQEAFNNLKDALVKPPILRFP 5775
+ P ++P V R RL +Y L + + + ++ ++D++ + FT ++ + + E S+ G T+D FGL K P L I+ + H + Y ++ I+S +HL H+ + R N+ K ++ Q V ++ V++ VK + + +P P + ++ F+ Y F+ FS IA PL +F WG E+QEAF LK A K P+L P
Sbjct: 609 ECPSTAPWEPVGARMQERARLQEEYWDLQDMLTNRQDYIQMIPELFDQLHGAEWFTKLELRG-----TIVEESV--NGHRTED----VWKAAFGLELEEMKSYQPFALSPDPIIPQNVIHFILKDMLGFFVLSYGQEVLIYSMSQEEHLHHVRQVLVRFRHHNVYCSLDKSQFHRQTVEFLGFVVTPKGVKLNKNVMTIITGYPTPGSKLSLRNFIEFVFPYRHFVERFSIIAEPLVRQLLSSYQFYWGVEEQEAFECLKRAFRKAPLLHHP 869
BLAST of Retrovirus-related Pol polyprotein from transposon vs. Ensembl Human
Match: RTL1 (retrotransposon Gag like 1 [Source:HGNC Symbol;Acc:HGNC:14665]) HSP 1 Score: 69.3218 bits (168), Expect = 9.152e-11 Identity = 64/272 (23.53%), Postives = 111/272 (40.81%), Query Frame = 1
Query: 5008 KSPYSSPLVVVAKR-DGSIRLCNDYRKLNEQTVSDNHPLPLLDYIYDKMKNSRLFTVMDAQKGFYQIKMSENSIPMTGFSTDDDHFEYLMMTFGL-----KGAPPTFLRAMNIMLMDAHH----------AMVYIDDIFIFSEDLNKHLEHLEDIYKRLIMANLKVKPSKCKWAEQEVIYVEHVISHDCVKPDPPNTEKVRNFPQPTNVKQIKGFLGLTGYYPQFIRNFSAIAFPLTVLEKKGVKFTWGNEQQEAFNNLKDALVKPPILRFP 5775
+ P ++P V R RL +Y L + + + ++ ++D++ + FT ++ + + E S+ G T+D FGL K P L I+ + H + Y ++ I+S +HL H+ + R N+ K ++ Q V ++ V++ VK + + +P P + ++ F+ Y F+ FS IA PL +F WG E+QEAF LK A K P+L P
Sbjct: 609 ECPSTAPWEPVGARMQERARLQEEYWDLQDMLTNRQDYIQMIPELFDQLHGAEWFTKLELRG-----TIVEESV--NGHRTED----VWKAAFGLELEEMKSYQPFALSPDPIIPQNVIHFILKDMLGFFVLSYGQEVLIYSMSQEEHLHHVRQVLVRFRHHNVYCSLDKSQFHRQTVEFLGFVVTPKGVKLNKNVMTIITGYPTPGSKLSLRNFIEFVFPYRHFVERFSIIAEPLVRQLLSSYQFYWGVEEQEAFECLKRAFRKAPLLHHP 869
BLAST of Retrovirus-related Pol polyprotein from transposon vs. Ensembl Celegans
Match: K02E2.6 (pep chromosome:WBcel235:V:20380580:20381966:1 gene:WBGene00010507.1 transcript:K02E2.6.2 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:K02E2.6) HSP 1 Score: 52.373 bits (124), Expect = 1.285e-7 Identity = 31/101 (30.69%), Postives = 55/101 (54.46%), Query Frame = 3
Query: 4080 NLANKPTIKIKVNRHTVHALIDSGSDLTMIEANLLNET*LQAIAPTLT-TATGANGQAINVIGILDCELRLCDQKFRHDIKVT--RECMAECIVGMDILKK 4373
N P +++ VN VH L+D+G+ ++ + + +N L+ + PT A ANG I GI+ LR+ ++ F H + V+ ++C E ++G D +KK
Sbjct: 22 NRGRLPVVQVGVNGKVVHVLLDTGAGISYLPISKIN---LKDLDPTYQLQAHAANGTPILFHGIVKLALRMGNRVFEHTLHVSDDKDCPTEMLLGTDFMKK 119
BLAST of Retrovirus-related Pol polyprotein from transposon vs. Ensembl Celegans
Match: K02E2.6 (pep chromosome:WBcel235:V:20380561:20382036:1 gene:WBGene00010507.1 transcript:K02E2.6.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:K02E2.6) HSP 1 Score: 52.373 bits (124), Expect = 1.285e-7 Identity = 31/101 (30.69%), Postives = 55/101 (54.46%), Query Frame = 3
Query: 4080 NLANKPTIKIKVNRHTVHALIDSGSDLTMIEANLLNET*LQAIAPTLT-TATGANGQAINVIGILDCELRLCDQKFRHDIKVT--RECMAECIVGMDILKK 4373
N P +++ VN VH L+D+G+ ++ + + +N L+ + PT A ANG I GI+ LR+ ++ F H + V+ ++C E ++G D +KK
Sbjct: 22 NRGRLPVVQVGVNGKVVHVLLDTGAGISYLPISKIN---LKDLDPTYQLQAHAANGTPILFHGIVKLALRMGNRVFEHTLHVSDDKDCPTEMLLGTDFMKK 119
BLAST of Retrovirus-related Pol polyprotein from transposon vs. Ensembl Zebrafish
Match: BX511082.1 (pep chromosome:GRCz11:9:14291932:14297132:1 gene:ENSDARG00000113678.1 transcript:ENSDART00000183119.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:BX511082.1) HSP 1 Score: 216.853 bits (551), Expect = 4.889e-56 Identity = 113/304 (37.17%), Postives = 169/304 (55.59%), Query Frame = 1
Query: 4894 LTETKPIKIRPYKIPQSLQEPVNKQIKLMQKYNIIRSSKSPYSSPLVVVAKRDGSIRLCNDYRKLNEQTVSDNHPLPLLDYIYDKMKNSRLFTVMDAQKGFYQIKMSENSIPMTGFSTDDDHFEYLMMTFGLKGAPPTFLRAMNIMLMDA--HHAMVYIDDIFIFSEDLNKHLEHLEDIYKRLIMANLKVKPSKCKWAEQEVIYVEHVISHDCVKPDPPNTEKVRNFPQPTNVKQIKGFLGLTGYYPQFIRNFSAIAFPLTVLEKKGVKFTWGNEQQEAFNNLKDALVKPPILRFPDFNRQFMV 5799
L T P K + Y + +E + K I IIR S SP + V K+DGS+R C DYR LN TV + +PLPL+ +++++ + FT +D + ++ +++ E T F+T HFEY ++ FGL AP F +N +L D VY+DDI IFS L +H++H+ + +RL+ L VK KC + Q V ++ H++S + ++ DP + V ++P P + K ++ FLG +Y +FIRNFS +A PLT L F W N Q AF+ LK V PIL PD +RQF+V
Sbjct: 519 LPGTSPPKGKLYSLSVPEREAMEKYISDSLAAKIIRPSSSPAGAGFFFVKKKDGSLRPCIDYRGLNAITVKNTYPLPLMSSAFERLQGASFFTKLDLRNAYHLVRIREGDEWKTAFNTPRGHFEYCVLPFGLSNAPAVFQALVNDVLRDMLDQFIYVYLDDILIFSHSLQEHVQHVRRVLQRLLENGLYVKAEKCVFHAQSVPFLGHIVSVEGMRMDPEKVQAVVDWPTPDSRKALQRFLGFANFYRRFIRNFSQLAAPLTALTSLKTPFRWSNAAQVAFDRLKSCFVSAPILIAPDPSRQFVV 822
BLAST of Retrovirus-related Pol polyprotein from transposon vs. Ensembl Zebrafish
Match: CR855320.1 (pep chromosome:GRCz11:1:7956030:7961696:1 gene:ENSDARG00000099359.2 transcript:ENSDART00000159655.2 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CR855320.1) HSP 1 Score: 213.386 bits (542), Expect = 5.680e-55 Identity = 110/304 (36.18%), Postives = 168/304 (55.26%), Query Frame = 1
Query: 4894 LTETKPIKIRPYKIPQSLQEPVNKQIKLMQKYNIIRSSKSPYSSPLVVVAKRDGSIRLCNDYRKLNEQTVSDNHPLPLLDYIYDKMKNSRLFTVMDAQKGFYQIKMSENSIPMTGFSTDDDHFEYLMMTFGLKGAPPTFLRAMNIMLMDA--HHAMVYIDDIFIFSEDLNKHLEHLEDIYKRLIMANLKVKPSKCKWAEQEVIYVEHVISHDCVKPDPPNTEKVRNFPQPTNVKQIKGFLGLTGYYPQFIRNFSAIAFPLTVLEKKGVKFTWGNEQQEAFNNLKDALVKPPILRFPDFNRQFMV 5799
L T P K + Y + +E + K I IIR S SP + V K+DGS+R C DYR LN TV + +PLPL+ +++++ + FT +D + ++ +++ + F+T HFEY ++ FGL AP F +N +L D VY+DDI IFS L +H++H+ + +RL+ L VK KC + Q V ++ H++S + ++ DP + V N+P P + K ++ FLG +Y +FIRNFS +A PLT L F W + + AF+ LK V PIL PD +RQF+V
Sbjct: 521 LPGTSPPKGKLYSLSAPEREAMGKYISDSLAAKIIRPSSSPAGAGFFFVKKKDGSLRPCIDYRGLNNITVKNTYPLPLMSSAFERLQGANFFTKLDLRNAYHLVRIRAGDEWKSAFNTPRGHFEYCVLPFGLSNAPAVFQAFVNDVLRDMIDQFIYVYLDDILIFSHSLQEHVQHIRRVLQRLLENGLYVKAEKCVFHAQSVPFLGHIVSVEGLRMDPEKIKAVVNWPTPDSRKALQRFLGFANFYRRFIRNFSQLAAPLTALTSSKTPFRWSSAAEAAFSKLKGCFVSAPILITPDPSRQFVV 824
BLAST of Retrovirus-related Pol polyprotein from transposon vs. Ensembl Zebrafish
Match: BX546500.1 (pep chromosome:GRCz11:23:12926092:12931693:-1 gene:ENSDARG00000086495.3 transcript:ENSDART00000122176.3 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:BX546500.1) HSP 1 Score: 211.075 bits (536), Expect = 2.247e-54 Identity = 110/304 (36.18%), Postives = 169/304 (55.59%), Query Frame = 1
Query: 4894 LTETKPIKIRPYKIPQSLQEPVNKQIKLMQKYNIIRSSKSPYSSPLVVVAKRDGSIRLCNDYRKLNEQTVSDNHPLPLLDYIYDKMKNSRLFTVMDAQKGFYQIKMSENSIPMTGFSTDDDHFEYLMMTFGLKGAPPTFLRAMNIMLMDA--HHAMVYIDDIFIFSEDLNKHLEHLEDIYKRLIMANLKVKPSKCKWAEQEVIYVEHVISHDCVKPDPPNTEKVRNFPQPTNVKQIKGFLGLTGYYPQFIRNFSAIAFPLTVLEKKGVKFTWGNEQQEAFNNLKDALVKPPILRFPDFNRQFMV 5799
L T P K + Y + +E + K I IIR S SP + V K+DGS+R C DYR LN TV + +PLPL+ +++++ + FT +D + ++ +++ T F+T HFEY ++ FGL AP F +N +L D VY+DDI IFS L +H++H+ + +RL+ L VK KC + Q V ++ H++S + ++ DP + V ++P P + K ++ FLG +Y +FIRNFS +A PLT L + F W + + AF+ LK V PIL PD +RQF+V
Sbjct: 493 LPGTSPPKGKLYSLSVPEREAMEKYISDSLAAKIIRPSSSPAGAGFFFVKKKDGSLRPCIDYRGLNSITVKNTYPLPLMSSAFERLQGANFFTKLDLRNAYHLVRIRPGDEWKTAFNTPRGHFEYCVLPFGLSNAPAVFQALVNDVLRDMIDQFIYVYLDDILIFSHSLQEHVQHVRRVLQRLLENGLYVKAEKCVFHAQSVQFLGHIVSVEGMRMDPEKIQAVVDWPTPDSRKALQRFLGFANFYRRFIRNFSQLAAPLTSLTSSKMPFRWSSAAEAAFSKLKGCFVSAPILIAPDPSRQFVV 796
BLAST of Retrovirus-related Pol polyprotein from transposon vs. Ensembl Zebrafish
Match: CR925755.2 (pep chromosome:GRCz11:17:42486740:42492668:-1 gene:ENSDARG00000116402.1 transcript:ENSDART00000183946.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CR925755.2) HSP 1 Score: 211.075 bits (536), Expect = 2.337e-54 Identity = 111/304 (36.51%), Postives = 166/304 (54.61%), Query Frame = 1
Query: 4894 LTETKPIKIRPYKIPQSLQEPVNKQIKLMQKYNIIRSSKSPYSSPLVVVAKRDGSIRLCNDYRKLNEQTVSDNHPLPLLDYIYDKMKNSRLFTVMDAQKGFYQIKMSENSIPMTGFSTDDDHFEYLMMTFGLKGAPPTFLRAMNIMLMDA--HHAMVYIDDIFIFSEDLNKHLEHLEDIYKRLIMANLKVKPSKCKWAEQEVIYVEHVISHDCVKPDPPNTEKVRNFPQPTNVKQIKGFLGLTGYYPQFIRNFSAIAFPLTVLEKKGVKFTWGNEQQEAFNNLKDALVKPPILRFPDFNRQFMV 5799
L T P K + Y + +E + K I IIR S SP + V K+DGS+R C DYR LN TV + +PLPL+ +++++ + FT +D + ++ +++ T F+T HFEY ++ FGL AP F +N +L D VY+DDI IFS L +H++H+ + +RL+ L VK KC + Q V ++ H +S + ++ DP + V N+P P + K ++ FLG +Y +FIRNF +A PLT L F W N + AF+ LK V PIL PD +RQF+V
Sbjct: 492 LPGTSPPKGKLYSLSVPEREAMEKYISDSLAAKIIRPSSSPAGAGFFFVKKKDGSLRPCIDYRGLNSITVKNTYPLPLMSSAFERLQGANFFTKLDLRNAYHLVRIRPGDEWKTAFNTPRGHFEYCVLPFGLSNAPAVFQALVNDVLRDMIDQFIYVYLDDILIFSHSLQEHVQHVRRVLQRLLENGLYVKAEKCVFHAQSVQFLGHTVSVEGMRMDPEKIQAVVNWPTPDSRKALQRFLGFANFYRRFIRNFRQLAAPLTNLTSSKTPFRWSNAAEAAFSKLKGCFVSAPILIAPDPSRQFVV 795
BLAST of Retrovirus-related Pol polyprotein from transposon vs. Ensembl Zebrafish
Match: BX511224.1 (pep chromosome:GRCz11:2:18017000:18022765:1 gene:ENSDARG00000113243.1 transcript:ENSDART00000186877.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:BX511224.1) HSP 1 Score: 209.534 bits (532), Expect = 8.828e-54 Identity = 110/304 (36.18%), Postives = 166/304 (54.61%), Query Frame = 1
Query: 4894 LTETKPIKIRPYKIPQSLQEPVNKQIKLMQKYNIIRSSKSPYSSPLVVVAKRDGSIRLCNDYRKLNEQTVSDNHPLPLLDYIYDKMKNSRLFTVMDAQKGFYQIKMSENSIPMTGFSTDDDHFEYLMMTFGLKGAPPTFLRAMNIMLMDA--HHAMVYIDDIFIFSEDLNKHLEHLEDIYKRLIMANLKVKPSKCKWAEQEVIYVEHVISHDCVKPDPPNTEKVRNFPQPTNVKQIKGFLGLTGYYPQFIRNFSAIAFPLTVLEKKGVKFTWGNEQQEAFNNLKDALVKPPILRFPDFNRQFMV 5799
L T P K + Y + +E + K I IIR S SP + V K+DGS+R C DYR LN TV + +PLPL+ +++++ + FT +D + ++ + + T F+T HFEY ++ FGL AP F +N +L D VY+DDI IFS L +H++H+ + +RL+ L VK KC + Q V ++ H++S + ++ DP + V N+P P + K ++ FLG +Y +FI NFS +A PLT L F W + + AF+ LK V PIL PD +RQF+V
Sbjct: 519 LPGTSPPKGKLYSLSVPEREAMEKYISDSLAAKIIRPSSSPAGAGFFFVKKKDGSLRPCIDYRGLNSITVKNTYPLPLMSSAFERLQGANFFTKLDLRNAYHLVCIRPGDEWKTAFNTPRGHFEYCVLPFGLSNAPAVFQALVNDVLRDMIDQFIYVYLDDILIFSHSLQEHIQHVRRVLQRLLENGLYVKAEKCVFHAQSVQFLGHIVSVEGMRMDPEKIQAVVNWPTPDSRKALQRFLGFANFYRRFIHNFSQLAAPLTSLTSSKTPFRWSSAAEAAFSKLKGCFVSAPILIAPDPSRQFVV 822
BLAST of Retrovirus-related Pol polyprotein from transposon vs. Ensembl Xenopus
Match: anxa6 (annexin A6 [Source:Xenbase;Acc:XB-GENE-989741]) HSP 1 Score: 243.817 bits (621), Expect = 8.773e-67 Identity = 116/336 (34.52%), Postives = 201/336 (59.82%), Query Frame = 1
Query: 4801 KVNQLLRKYDQVFAKHEYDLGQVNILEHEINLTETKPIKIRPYKIPQSLQEPVNKQIKLMQKYNIIRSSKSPYSSPLVVVAKRDGSIRLCNDYRKLNEQTVSDNHPLPLLDYIYDKMKNSRLFTVMDAQKGFYQIKMSENSIPMTGFSTDDDHFEYLMMTFGLKGAPPTFLRAMNIMLMDAH-HAMVYIDDIFIFSEDLNKHLEHLEDIYKRLIMANLKVKPSKCKWAEQEVIYVEHVISHDCVKPDPPNTEKVRNFPQPTNVKQIKGFLGLTGYYPQFIRNFSAIAFPLTVL--EKKGVKFTWGNEQQEAFNNLKDALVKPPILRFPDFNRQFMV 5799
++ ++LR Y +F+ + G+ + EH+++ PI+ Y++ ++++ + QI M + +I S SP++SP+V+V K+DGS R C DYR+LN+ T +D +P+P +D + D++ N++ T +D +G++QI ++ ++ + F T +++ +M FG++ AP TF R +N +L A Y+DDI +FS+ +HL+HL+ ++ ++ A L +KP KC A EV Y+ H + ++PDP E + +P P KQ+ FLG +GYY +FI N+S +A PLT L ++ W E + A N LK AL P+L PDF+R+F++
Sbjct: 304 QLRKILRSYSPMFSANP---GRTHWAEHKVDTGTQLPIRSPAYRVAEAVRPEMKSQIDEMLAFGVITPSHSPWASPVVLVPKKDGSTRFCVDYRRLNDVTTTDAYPMPRVDELLDRLGNAKYLTTLDLSRGYWQIPLAPSAQEKSAFLTPFGLYQFTVMPFGMRNAPATFQRLVNRLLEGMQDFAQAYLDDIAVFSQTWEEHLQHLQRVFAQIQDAGLTLKPEKCHLAMAEVQYLGHRVGGGQLRPDPAKVEAICQWPIPKTQKQVLAFLGTSGYYRKFIPNYSTVAKPLTDLTSRQRSRTIVWTPECESAMNALKQALASSPVLAAPDFSRRFIL 636
BLAST of Retrovirus-related Pol polyprotein from transposon vs. Ensembl Xenopus
Match: alkbh5 (alkB homolog 5, RNA demethylase [Source:Xenbase;Acc:XB-GENE-987580]) HSP 1 Score: 223.016 bits (567), Expect = 1.081e-61 Identity = 108/305 (35.41%), Postives = 181/305 (59.34%), Query Frame = 1
Query: 4771 SKDLTRRENIKVNQLLRKYDQVFAKHEYDLGQVNILEHEINLTETKPIKIRPYKIPQSLQEPVNKQIKLMQKYNIIRSSKSPYSSPLVVVAKRDGSIRLCNDYRKLNEQTVSDNHPLPLLDYIYDKMKNSRLFTVMDAQKGFYQIKMSENSIPMTGFSTDDDHFEYLMMTFGLKGAPPTFLRAMNIMLM-DAHHAMVYIDDIFIFSEDLNKHLEHLEDIYKRLIMANLKVKPSKCKWAEQEVIYVEHVISHDCVKPDPPNTEKVRNFPQPTNVKQIKGFLGLTGYYPQFIRNFSAIAFPLTVLEK 5682
++ LT + ++ + L + Q+F+ G +++H+I + +RPY+IP++ ++ V +IK M + ++I S S +SSP+V+V K DGSIR CND+RKLNE + D +P+P +D + +++ +R T +D KG++Q+ ++E + T FST + ++Y + FGL GAP TF R M+ +L +A Y+DD+ IFS D HL ++ + + A L P KC +E Y+ +VI VKP E ++ +P+P + KQ++ FLG+ GYY +F+ NF+++A PLT L K
Sbjct: 192 AETLTNSQKQEMREFLIRNRQIFSDQP---GLTEMIKHDIITGPGVKVNVRPYRIPEARRQAVAGEIKRMLELDVIEESHSEWSSPIVLVPKPDGSIRFCNDFRKLNEVSKFDAYPMPRVDELIERLGQARYITTLDLTKGYWQVPLTEGAKEKTAFSTPEGQWQYKRLPFGLHGAPATFQRMMDRILKPHRGYASAYLDDVVIFSPDWESHLPRVQAVLDSIWKAGLTANPKKCAMGLEEARYLGYVIGRGVVKPQVSKIEGIQQWPRPNSKKQVRAFLGIVGYYRRFVPNFASLASPLTDLTK 493
BLAST of Retrovirus-related Pol polyprotein from transposon vs. Ensembl Xenopus
Match: ENSXETT00000006041.1 (pep primary_assembly:Xenopus_tropicalis_v9.1:6:37317867:37322724:1 gene:ENSXETG00000003070.1 transcript:ENSXETT00000006041.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 219.55 bits (558), Expect = 5.628e-57 Identity = 116/359 (32.31%), Postives = 195/359 (54.32%), Query Frame = 1
Query: 4801 KVNQLLRKYDQVFAKHEYDLGQVNILEHEINLTETKPIKIRPYKIPQSLQEPVNKQIKLMQKYNIIRSSKSPYSSPLVVVAKRDGSIRLCNDYRKLNEQTVSDNHPLPLLDYIYDKMKNSRLFTVMDAQKGFYQIKMSENSIPMTGFSTDDDHFEYLMMTFGLKGAPPTFLRAMNIMLMDAH--HAMVYIDDIFIFSEDLNKHLEHLEDIYKRLIMANLKVKPSKCKWAEQEVIYVEHVISHDCVKPDPPNTEKVRNFPQPTNVKQIKGFLGLTGYYPQFIRNFSAIAFPLT---------------VLEK--KGVKFT-------WGNEQQEAFNNLKDALVKPPILRFPDFNRQFMV 5799
++ + L ++ +F++++ D+G +H+I L E KP + R +I E + K ++ ++ II+ S+SPY+SP+VVV K++GSIR+C DYR LN++T+ D + P ++ + + S+ F+V+D + G+YQ+ M T F FE+ M GL GAP TF R M + D H +VY+DD+ +F L +H + L ++ RL LK+ P KC++ + V YV HV+S + + DP E V ++P+P + +++ FLG GYY +F++ FS +A PL +L K +G +T W E +AF+ LK L P+L + D + + +
Sbjct: 290 RLRKHLNEHSALFSRNDLDMGCSTSTKHKIRLREDKPFRERSRRIAPGDLEDLRKHLEELKAAGIIKESRSPYASPIVVVRKKNGSIRMCVDYRTLNQRTIPDQYTTPRIEDALNCLVGSKWFSVLDLRSGYYQLPMHPEDKEKTAFICPLGFFEFNRMPQGLCGAPATFQRLMERTVGDMHLLEVLVYLDDLIVFGRTLEEHEQRLLKVFDRLEKEGLKLSPEKCQFCQPSVNYVGHVVSAEGIATDPSKIEAVSSWPKPRTITELRSFLGFCGYYRRFVKGFSKVAQPLNQLLQSNTEVEGSDRDILAKRLRGQGWTRESIEDFWTEECDKAFDQLKYCLTHAPVLAYADATKPYTL 648
BLAST of Retrovirus-related Pol polyprotein from transposon vs. Ensembl Xenopus
Match: ENSXETT00000035398.1 (pep primary_assembly:Xenopus_tropicalis_v9.1:3:9869556:9871940:-1 gene:ENSXETG00000011182.1 transcript:ENSXETT00000035398.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 183.726 bits (465), Expect = 4.357e-47 Identity = 100/300 (33.33%), Postives = 163/300 (54.33%), Query Frame = 1
Query: 4909 PIKIRPYKIPQSLQEPVNKQIKLMQKYNIIRSSKSPYSSPLVVVAKRDGSIRLCNDYRKLNEQTVSDNHPLPLLDYIYDKMKNSRLFTVMDAQKGFYQIKMSENSIPMTGFSTDDDHFEYLMMTFGLKGAPPTFLRAMNIMLMD--AHHAMVYIDDIFIFSEDLNKHLEHLEDIYKRLIMANLKVKPSKCKWAEQEVIYVEHVISHDCVKPDPPNTEKVRNFPQPTNVKQIKGFLGLTGYYPQFIRNFSA-IAFPLTVLEKKGVKFTWGNEQQEAFNNLKDALVKPPILRFPDFNRQFMV 5799
P + R Y + + + + I + IR S SP + V K+DG +R C DYR LN+ TV + +PLPL+ ++D++K +++F+ +D + + I++ E T F+T D H+EYL+M FGL AP F +N + D +VY+DDI IFS+DL H +++ RL +L K KC + ++ ++ ++IS + DP ++ +P P + K I+ F+G YY QFI+ FS+ IA L+++ K G W EAF +LKDA + +LR P+ + F +
Sbjct: 2 PPRGRTYPLSPAETAAMKEYISENLQRGFIRPSTSPAGAGFFFVEKKDGGLRPCIDYRGLNKITVKNRYPLPLISELFDQLKGAKIFSKLDLRGAYNLIRIREGDEWKTAFNTRDGHYEYLVMPFGLCNAPAVFQEFVNDIFRDLLGKSVVVYLDDILIFSQDLETHRSQVKEALSRLRENSLFAKLEKCTFEVPKISFLGYIISSRGFEMDPAKVSAIQKWPLPQSTKAIQRFIGFANYYRQFIKGFSSRIAPILSLIRKGGRPNCWPPVALEAFQSLKDAFISASVLRHPEPHLPFFI 301
BLAST of Retrovirus-related Pol polyprotein from transposon vs. Ensembl Xenopus
Match: denr (density-regulated protein [Source:Xenbase;Acc:XB-GENE-1002798]) HSP 1 Score: 183.726 bits (465), Expect = 5.094e-46 Identity = 100/300 (33.33%), Postives = 163/300 (54.33%), Query Frame = 1
Query: 4909 PIKIRPYKIPQSLQEPVNKQIKLMQKYNIIRSSKSPYSSPLVVVAKRDGSIRLCNDYRKLNEQTVSDNHPLPLLDYIYDKMKNSRLFTVMDAQKGFYQIKMSENSIPMTGFSTDDDHFEYLMMTFGLKGAPPTFLRAMNIMLMD--AHHAMVYIDDIFIFSEDLNKHLEHLEDIYKRLIMANLKVKPSKCKWAEQEVIYVEHVISHDCVKPDPPNTEKVRNFPQPTNVKQIKGFLGLTGYYPQFIRNFSA-IAFPLTVLEKKGVKFTWGNEQQEAFNNLKDALVKPPILRFPDFNRQFMV 5799
P + R Y + + + + I + IR S SP + V K+DG +R C DYR LN+ TV + +PLPL+ ++D++K +++F+ +D + + I++ E T F+T D H+EYL+M FGL AP F +N + D +VY+DDI IFS+DL H +++ RL +L K KC + ++ ++ ++IS + DP ++ +P P + K I+ F+G YY QFI+ FS+ IA L+++ K G W EAF +LKDA + +LR P+ + F +
Sbjct: 520 PPRGRTYPLSPAETAAMKEYISENLQRGFIRPSTSPAGAGFFFVEKKDGGLRPCIDYRGLNKITVKNRYPLPLISELFDQLKGAKIFSKLDLRGAYNLIRIREGDEWKTAFNTRDGHYEYLVMPFGLCNAPAVFQEFVNDIFRDLLGKSVVVYLDDILIFSQDLETHRSQVKEALSRLRENSLFAKLDKCTFEVPKISFLGYIISSRGFEMDPAKVSAIQKWPLPQSTKAIQRFIGFANYYRQFIKGFSSRIAPILSLIRKGGRPNCWPPVALEAFQSLKDAFISASVLRHPEPHLPFFI 819
BLAST of Retrovirus-related Pol polyprotein from transposon vs. Ensembl Mouse
Match: Rtl1 (retrotransposon Gaglike 1 [Source:MGI Symbol;Acc:MGI:2656842]) HSP 1 Score: 55.0694 bits (131), Expect = 1.327e-6 Identity = 36/142 (25.35%), Postives = 61/142 (42.96%), Query Frame = 1
Query: 5368 DIFIFSEDLNKHLEHLEDIYKRLIMANLKVKPSKCKWAEQEVIYVEHVISHDCVKPDPPNTEKVRNFPQPTNVKQIKGFLGLTGYYPQFIRNFSAIAFPLTVLEKKGVKFTWGNEQQEAFNNLKDALVKPPILRFPDFNRQF 5793
++ ++S +H +H+ + R N+ K ++ Q + IS VK + + P P + + ++ + L Y F+ NF+ IA PL + WG E+QEA +LK A K P+L P F
Sbjct: 995 EVLVYSMSQEEHSQHVRQVLVRFRYHNIYCSLDKTQFHRQTAEILGFNISPKGVKLNKNLMNLIVGCPVPGSRRCLQSVIDLVYPYRHFVENFAVIAAPLVRQLLSSEPYYWGEEEQEALESLKRAFRKSPVLYHPKPQNPF 1136
BLAST of Retrovirus-related Pol polyprotein from transposon vs. Ensembl Mouse
Match: Rtl1 (retrotransposon Gaglike 1 [Source:MGI Symbol;Acc:MGI:2656842]) HSP 1 Score: 55.0694 bits (131), Expect = 1.327e-6 Identity = 36/142 (25.35%), Postives = 61/142 (42.96%), Query Frame = 1
Query: 5368 DIFIFSEDLNKHLEHLEDIYKRLIMANLKVKPSKCKWAEQEVIYVEHVISHDCVKPDPPNTEKVRNFPQPTNVKQIKGFLGLTGYYPQFIRNFSAIAFPLTVLEKKGVKFTWGNEQQEAFNNLKDALVKPPILRFPDFNRQF 5793
++ ++S +H +H+ + R N+ K ++ Q + IS VK + + P P + + ++ + L Y F+ NF+ IA PL + WG E+QEA +LK A K P+L P F
Sbjct: 995 EVLVYSMSQEEHSQHVRQVLVRFRYHNIYCSLDKTQFHRQTAEILGFNISPKGVKLNKNLMNLIVGCPVPGSRRCLQSVIDLVYPYRHFVENFAVIAAPLVRQLLSSEPYYWGEEEQEALESLKRAFRKSPVLYHPKPQNPF 1136
BLAST of Retrovirus-related Pol polyprotein from transposon vs. UniProt/SwissProt
Match: sp|P04323|POL3_DROME (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1) HSP 1 Score: 263.077 bits (671), Expect = 1.585e-70 Identity = 150/349 (42.98%), Postives = 211/349 (60.46%), Query Frame = 1
Query: 4780 LTRRENIKVNQLLRKYDQVFAKHEYD-LGQVNILEHEINLTETKPIKIRPYKIPQSLQEPVNKQIKLMQKYNIIRSSKSPYSSPLVVVAKR-DGS----IRLCNDYRKLNEQTVSDNHPLPLLDYIYDKMKNSRLFTVMDAQKGFYQIKMSENSIPMTGFSTDDDHFEYLMMTFGLKGAPPTFLRAMNIML--MDAHHAMVYIDDIFIFSEDLNKHLEHLEDIYKRLIMANLKVKPSKCKWAEQEVIYVEHVISHDCVKPDPPNTEKVRNFPQPTNVKQIKGFLGLTGYYPQFIRNFSAIAFPLTVLEKKGVKFTWGN-EQQEAFNNLKDALVKPPILRFPDFNRQFMV 5799
L E ++ LL+KY + HE D L N +H IN P+ + Y PQ+ ++ V QI+ M IIR+S SPY+SP+ VV K+ D S R+ DYRKLNE TV D HP+P +D I K+ FT +D KGF+QI+M S+ T FST H+EYL M FGLK AP TF R MN +L + H +VY+DDI +FS L++HL+ L ++++L ANLK++ KC++ +QE ++ HV++ D +KP+P E ++ +P PT K+IK FLGLTGYY +FI NF+ IA P+T KK +K N E AF LK + + PIL+ PDF ++F +
Sbjct: 165 LNNEEKQRLCALLQKYHDI-QYHEGDKLTFTNQTKHTINTKHNLPLYSK-YSYPQAYEQEVESQIQDMLNQGIIRTSNSPYNSPIWVVPKKQDASGKQKFRIVIDYRKLNEITVGDRHPIPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFSTKHGHYEYLRMPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKANLKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYRKFIPNFADIAKPMTKCLKKNMKIDTTNPEYDSAFKKLKYLISEDPILKVPDFTKKFTL 511
BLAST of Retrovirus-related Pol polyprotein from transposon vs. UniProt/SwissProt
Match: sp|P20825|POL2_DROME (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1) HSP 1 Score: 256.914 bits (655), Expect = 1.690e-68 Identity = 141/348 (40.52%), Postives = 210/348 (60.34%), Query Frame = 1
Query: 4780 LTRRENIKVNQLLRKYDQVFAKHEYDLGQVNILEHEINLTETKPIKIRPYKIPQSLQEPVNKQIKLMQKYNIIRSSKSPYSSPLVVVAKR-DGS----IRLCNDYRKLNEQTVSDNHPLPLLDYIYDKMKNSRLFTVMDAQKGFYQIKMSENSIPMTGFSTDDDHFEYLMMTFGLKGAPPTFLRAMNIML--MDAHHAMVYIDDIFIFSEDLNKHLEHLEDIYKRLIMANLKVKPSKCKWAEQEVIYVEHVISHDCVKPDPPNTEKVRNFPQPTNVKQIKGFLGLTGYYPQFIRNFSAIAFPLTVLEKKGVKF-TWGNEQQEAFNNLKDALVKPPILRFPDFNRQFMV 5799
L + E K+ LL K+ + K L N ++H +N T PI + Y + Q+ + V Q++ M +IR S SPY+SP VV K+ D S R+ DYRKLNE T+ D +P+P +D I K+ + FT +D KGF+QI+M E SI T FST H+EYL M FGL+ AP TF R MN +L + H +VY+DDI IFS L +HL ++ ++ +L ANLK++ KC++ ++E ++ H+++ D +KP+P + + ++P PT K+I+ FLGLTGYY +FI N++ IA P+T KK K T E EAF LK +++ PIL+ PDF ++F++
Sbjct: 163 LNQEETFKLKGLLNKFRNLEYKEGEKLTFTNTIKHVLNTTHNSPIYSKQYPLAQTHEIEVENQVQEMLNQGLIRESNSPYNSPTWVVPKKPDASGANKYRVVIDYRKLNEITIPDRYPIPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTKSGHYEYLRMPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADANLKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYRKFIPNYADIAKPMTSCLKKRTKIDTQKLEYIEAFEKLKALIIRDPILQLPDFEKKFVL 510
BLAST of Retrovirus-related Pol polyprotein from transposon vs. UniProt/SwissProt
Match: sp|Q99315|YG31B_YEAST (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3) HSP 1 Score: 209.92 bits (533), Expect = 5.086e-53 Identity = 111/284 (39.08%), Postives = 163/284 (57.39%), Query Frame = 1
Query: 4915 KIRPYKIPQSLQEPVNKQIKLMQKYNIIRSSKSPYSSPLVVVAKRDGSIRLCNDYRKLNEQTVSDNHPLPLLDYIYDKMKNSRLFTVMDAQKGFYQIKMSENSIPMTGFSTDDDHFEYLMMTFGLKGAPPTFLRAMNIMLMDAHHAMVYIDDIFIFSEDLNKHLEHLEDIYKRLIMANLKVKPSKCKWAEQEVIYVEHVISHDCVKPDPPNTEKVRNFPQPTNVKQIKGFLGLTGYYPQFIRNFSAIAFPLTVLEKKGVKFTWGNEQQEAFNNLKDALVKPPIL 5766
+++PY + + ++ +NK ++ + I SKSP SSP+V+V K+DG+ RLC DYR LN+ T+SD PLP +D + ++ N+++FT +D G++QI M T F T +EY +M FGL AP TF R M D VY+DDI IFSE +H +HL+ + +RL NL VK KCK+A +E ++ + I + P +R+FP P VKQ + FLG+ YY +FI N S IA P+ + K W +Q +A + LKDAL P+L
Sbjct: 598 RLQPYHVTEKNEQEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDLRFVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFASEETEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYYRRFIPNCSKIAQPIQLFICD--KSQWTEKQDKAIDKLKDALCNSPVL 879
BLAST of Retrovirus-related Pol polyprotein from transposon vs. UniProt/SwissProt
Match: sp|Q7LHG5|YI31B_YEAST (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2) HSP 1 Score: 206.453 bits (524), Expect = 5.303e-52 Identity = 110/284 (38.73%), Postives = 161/284 (56.69%), Query Frame = 1
Query: 4915 KIRPYKIPQSLQEPVNKQIKLMQKYNIIRSSKSPYSSPLVVVAKRDGSIRLCNDYRKLNEQTVSDNHPLPLLDYIYDKMKNSRLFTVMDAQKGFYQIKMSENSIPMTGFSTDDDHFEYLMMTFGLKGAPPTFLRAMNIMLMDAHHAMVYIDDIFIFSEDLNKHLEHLEDIYKRLIMANLKVKPSKCKWAEQEVIYVEHVISHDCVKPDPPNTEKVRNFPQPTNVKQIKGFLGLTGYYPQFIRNFSAIAFPLTVLEKKGVKFTWGNEQQEAFNNLKDALVKPPIL 5766
+++PY + + ++ +NK ++ + I SKSP SSP+V+V K+DG+ RLC DYR LN+ T+SD PLP +D + ++ N+++FT +D G++QI M T F T +EY +M FGL AP TF R M D VY+DDI IFSE +H +HL+ + +RL NL VK KCK+A +E ++ + I + P +R+FP P VKQ + FLG+ YY +FI N S IA P+ + K W +Q +A LK AL P+L
Sbjct: 624 RLQPYHVTEKNEQEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDLRFVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFASEETEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYYRRFIPNCSKIAQPIQLFICD--KSQWTEKQDKAIEKLKAALCNSPVL 905
BLAST of Retrovirus-related Pol polyprotein from transposon vs. UniProt/SwissProt
Match: sp|Q8I7P9|POL5_DROME (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1) HSP 1 Score: 202.986 bits (515), Expect = 1.557e-51 Identity = 114/348 (32.76%), Postives = 189/348 (54.31%), Query Frame = 1
Query: 4804 VNQLLRKYDQVFAKHEYDLGQVNILEHEINLTETKPIKIRPYKIPQSLQEPVNKQIKLMQKYNIIRSSKSPYSSPLVVVAKR-----DGSIRLCNDYRKLNEQTVSDNHPLPLLDYIYDKMKNSRLFTVMDAQKGFYQIKMSENSIPMTGFSTDDDHFEYLMMTFGLKGAPPTFLRAMNIMLMD--AHHAMVYIDDIFIFSEDLNKHLEHLEDIYKRLIMANLKVKPSKCKWAEQEVIYVEHVISHDCVKPDPPNTEKVRNFPQPTNVKQIKGFLGLTGYYPQFIRNFSAIAFPLTVL-----------EKKGVKFTWGNEQQEAFNNLKDALVKPPILRFPDFNRQF 5793
+N LL ++ ++F + ++ EI PI + Y P +++ V +QI + + IIR S SPY+SP+ +V K+ + R+ D+++LN T+ D +P+P ++ + N++ FT +D GF+QI M E+ IP T FST + +E+L + FGLK AP F R ++ +L + VYIDDI +FSED + H ++L + L ANL+V K + + +V ++ ++++ D +K DP + P PT+VK++K FLG+T YY +FI++++ +A PLT L + V T ++FN+LK L IL FP F + F
Sbjct: 88 LNSLLGEFPRIFEPPLSGMSVETAVKAEIRTNTQDPIYAKSYPYPVNMRGEVERQIDELLQDGIIRPSNSPYNSPIWIVPKKPKPNGEKQYRMVVDFKRLNTVTIPDTYPIPDINATLASLGNAKYFTTLDLTSGFHQIHMKESDIPKTAFSTLNGKYEFLRLPFGLKNAPAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKANLQVNLEKSHFLDTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYRKFIQDYAKVAKPLTNLTRGLYANIKSSQSSKVPITLDETALQSFNDLKSILCSSEILAFPCFTKPF 435
BLAST of Retrovirus-related Pol polyprotein from transposon vs. TrEMBL
Match: A0A355ABF2 (Uncharacterized protein OS=Flavobacteriaceae bacterium OX=1871037 GN=DDZ39_05755 PE=4 SV=1) HSP 1 Score: 347.821 bits (891), Expect = 2.192e-107 Identity = 184/458 (40.17%), Postives = 273/458 (59.61%), Query Frame = 1
Query: 4429 VFLDRVVTIPPRTETVCFVATHQEMEGDVIFEPKVEFASKYNTPITQNLATXXXXXXXXXXTNMDNKTLRLYPDTRVGKIVRLKDPQEKVAQVLSVHEEERDLDIEYYDAPNCDSKDLTRRENIKVNQLLRKYDQVFAKHEYDLGQVNILEHEINLTETKPIKIRPYKIPQSLQEPVNKQIKLMQKYNIIRSSKSPYSSPLVVVAKRDGSIRLCNDYRKLNEQTVSDNHPLPLLDYIYDKMKNSRLFTVMDAQKGFYQIKMSENSIPMTGFSTDDDHFEYLMMTFGLKGAPPTFLRAMNIMLMDAHHAMVYIDDIFIFSEDLNKHLEHLEDIYKRLIMANLKVKPSKCKWAEQEVIYVEHVISHDCVKPDPPNTEKVRNFPQPTNVKQIKGFLGLTGYYPQFIRNFSAIAFPLTVLEKKGVKFTWGNEQQEAFNNLKDALVKPPILRFPDFNRQFMVM 5802
+++ TIP E V + H + VIFEP FA + + IP+R N N ++L +G I + + VA+V E PN L +N + + +KY +VFA ++DLG+ NI++H I L + PIK RPYK +L+ + KQ++ M+ +IR+S SP++SP+V+V K+DG++R C DYRKLN T D +PLP +D + DK+ NS+ FT +D Q G++QI++SE T F+T + +E+ ++ FGL GAP TF R M+ +LMDA HAMVYIDDI I+S D ++HL + + +RL +A LK+KP KC+WA+ V ++ H++S + +KPDP N EK++NF +P VK I+ FLG+ GYY +FI NF+ IA PL L KK W + QE+F LK+ L+ P+LRFPD N+ F++M
Sbjct: 1202 IYVTEDTTIPKWNEVVMPMQIHCNDDKTVIFEPNDIFADTNCLSVATTVTNTDNSTIPVRFVNYSNDNIQLQQGQHIGTIHEIDVVEVNVAKVF-----------EGGMPPNFPFDYLNNEQNQAMENIFQKYSKVFATDDFDLGKTNIIKHFIPLDKDNPIKQRPYKAAYALKGEIKKQVEDMKHNKVIRNSFSPWASPIVMVKKKDGTMRFCVDYRKLNTVTRKDTYPLPRIDEMLDKLNNSKFFTSLDLQSGYWQIEISEEDKYKTAFTTGEGLYEFNVLPFGLTGAPATFQRCMSHILMDASHAMVYIDDILIYSIDFDEHLHDITMVLQRLELAGLKIKPRKCEWAKSMVTFLGHLVSSEGIKPDPKNVEKIKNFEKPVKVKGIQRFLGMAGYYRKFIPNFAKIASPLFDLTKKNDNTLWTEKHQESFEELKNRLIHFPVLRFPDMNKDFIIM 1648 HSP 2 Score: 75.0998 bits (183), Expect = 2.192e-107 Identity = 40/100 (40.00%), Postives = 55/100 (55.00%), Query Frame = 3
Query: 4095 PTIKIKVNRHTVHALIDSGSDLTMIEANLLNET*LQAIAPTLTTATGANGQAINVIGILDCELRLCDQKFRHDIKVTRECMAECIVGMDILKKLKDIVFD 4394
P I +++N T ALID+GS T++ L + I PT G +G +N IG L CEL +C+QK ++ V + CI+GM L KLK IVFD
Sbjct: 1084 PKILVQINGRTRIALIDTGSGATLLNYEGLKPQYRRLIKPTCLKVQGMSGTILNPIGQLLCELTICNQKISSELVVVKNLPYPCIIGMSTLSKLKGIVFD 1183 HSP 3 Score: 254.988 bits (650), Expect = 8.275e-101 Identity = 130/329 (39.51%), Postives = 207/329 (62.92%), Query Frame = 3
Query: 2613 YVNNKIDFLYHDLQRQMQEMYQEVVLNDCRLNREIIRNRLAISVANPDLIMPML-MEHGTFGRIMGEAIYSYQCKIVEVEIAKYDKCTLELPVLYEGKLRFVAPVTHRILKEGEEPQKSTCNPAMSPLYKI-NNHWITLPDRKPPSKPVEILQAIKLTSKVEFRPLNELSKGGVYTPEDIEEARRAIGFPQVRDRGVTEIITRIYKHYDG-KLDYNLLFGPDHYRQAASNVIKKIWGRFTSFGIFVAGCSGIYAIFMILKIIASQLLSTYSIFKIGGWSWKLLLGMCPLCADFAVFRHDNKEIKMMKQRNLIKHEIVREWDEDYSHRDD 3590
Y NNK D+LYH RQ++++Y+E+++NDC+LNREI+R ++A+ V NP++ P++ + G F R++GE + +++CK VEV+I CT ELPV+Y+ K ++ PVT +L + + +K C+P SP YK+ +N WI P P + P + Q L + V+F L +L K G+Y + +E+AR+ + +PQVRDR +TEI+ DG + +Y LL P+H+ +AA NV+KK+WGRF FG +AG GIY + + LK Q+ STY ++KI G+SWKL+LG+ P A + + + +I ++++ +H +E H DD
Sbjct: 696 YFNNKADYLYHHQLRQIEDLYREMIINDCKLNREILRTKMALIVTNPNIAAPVIPLGKGVFSRVLGEVLQTFKCKQVEVKINISSDCTHELPVIYKNKFMYLEPVTRLLLPDVIKVKKIKCSPLFSPAYKLSDNTWIVTPSLTPIAPP-KRFQLTNLRNAVKFSRLKDLMKSGLYDKKAMEDARKYLLYPQVRDRILTEIVETSLG--DGNRPNYELLLSPNHFEKAAKNVMKKVWGRFLIFGQAIAGLMGIYYVVIFLKTFIEQVTSTYELYKIMGFSWKLILGIIPCLARPFISKKLHDKINDVEKKYANRHTYSNRDEEINVHVDD 1021 HSP 4 Score: 145.591 bits (366), Expect = 8.275e-101 Identity = 88/286 (30.77%), Postives = 149/286 (52.10%), Query Frame = 1
Query: 1699 SMTAYDCSNPSLGKIYSLVDTVDCREAYPDKVTKGEDVEYHVYQETDFYRTRVK*CRLQKATFEYYCGRHSYSVFLEAKLIPRSVPIQVDDCINAFRTSTL*IDNEVTISAEVXXXXXXXXXXXXXXEADGSCVGRTKTRVRDVVNSIVDVEDYSIELREYEGTFEVASGKMMTHPECNVKLGYCRTGAATLVYSTMKEFCELGYLKKTAFTKLNGTRFTSHKYQDGVWGEKKMQHINREDISEKSTPLVLVSKDPNDAIRLVRKGQKMKCSTTVYETNYKGIYLS 2556
++ AYDC N LG +SL+D +C EAYP++ K + YH+YQE + K C + + +CG HS+S ++ + + I +C +AFR + + +++ + A+ G + I K G I DG+C G + + +E Y I +++ E F+ + +MM+ C+ K +C G +++Y K+ C L +LK F + G F ++ + D + K + + I+ TP+VL++ +DAIRLVRK Q +KC +VY TNY I +S
Sbjct: 390 AIKAYDCDNAKLGTQFSLLDAEECPEAYPNQFEKRFNRIYHIYQERGLIYSAAKECTVTRRRSIRWCGHHSHSAIIKQPSMIEYLNIGHRNCEDAFRLKEIRLADKLILKAKPGILIQEDIIKVGSIAFDGTCEGGEYWYQGKKIKQALVIETYQITIKKSEVAFDPDTNEMMSRSYCSAKSNFCFDGKTSIIYDIRKQECNLVFLKTVNFDVIRGKIFDNNLFIDKLNSRPKKIYRTEKTINSHITPVVLIANKTSDAIRLVRKDQVVKCGQSVYLTNYDRIVVS 675
BLAST of Retrovirus-related Pol polyprotein from transposon vs. TrEMBL
Match: A0A533UJT0 (RNA-directed DNA polymerase (Fragment) OS=Thaumarchaeota archaeon OX=2026795 GN=E6L00_07210 PE=4 SV=1) HSP 1 Score: 297.36 bits (760), Expect = 3.582e-86 Identity = 138/334 (41.32%), Postives = 217/334 (64.97%), Query Frame = 1
Query: 4804 VNQLLRKYDQVFAKHEYDLGQVNILEHEINLTETKPIKIRPYKIPQSLQEPVNKQIKLMQKYNIIRSSKSPYSSPLVVVAKRDGSIRLCNDYRKLNEQTVSDNHPLPLLDYIYDKMKNSRLFTVMDAQKGFYQIKMSENSIPMTGFSTDDDHFEYLMMTFGLKGAPPTFLRAMNIMLMDA--HHAMVYIDDIFIFSEDLNKHLEHLEDIYKRLIMANLKVKPSKCKWAEQEVIYVEHVISHDCVKPDPPNTEKVRNFPQPTNVKQIKGFLGLTGYYPQFIRNFSAIAFPLTVLEKKGVKFTWGNEQQEAFNNLKDALVKPPILRFPDFNRQFMV 5799
+ +L+ KY ++ A LG+ N+++H+IN + +PI + ++ + + + +++ M K II+ S+ P+SSP+V+V K+DGS R C DYRK+N T++D HPLP +D + ++ + ++ F+ +D G++QI+M+E T F+ FE+ +M FGLK APPTF R MN +L D +VYIDDI I+S+ +HLEH+E I K+L NL +K SKCKW E+ + ++ HV+ +D +KPDP +K++N P PT K ++ LGL GYY +F+R FS IA PL L KKG +F W QQ+AF LK+ L++ PIL +PD+ ++F++
Sbjct: 31 IRRLIEKYKEICAISSTKLGKTNVVKHKINTGDHEPIAQKQFRADKKRRTIIKEEVDKMLKDGIIKKSEGPWSSPVVIVTKKDGSARFCIDYRKINNITITDAHPLPRIDDVLEQFREAKWFSSIDLASGYWQIEMNEKDREKTAFTCHLGLFEFNVMPFGLKNAPPTFQRMMNEILKDWLDEFVVVYIDDIMIYSKTFEEHLEHIEKILKKLKEVNLMLKLSKCKWGERNIEFLGHVVGNDGLKPDPRKIDKIKNLPIPTTQKGVRSVLGLCGYYRKFVRGFSKIAKPLNELLKKGKQFEWTESQQKAFEELKEKLIQYPILSYPDYEKEFIL 364
BLAST of Retrovirus-related Pol polyprotein from transposon vs. TrEMBL
Match: A0A4Y2WT15 (Retrovirus-related Pol polyprotein from transposon 297 (Fragment) OS=Araneus ventricosus OX=182803 GN=pol_3737 PE=4 SV=1) HSP 1 Score: 288.5 bits (737), Expect = 6.151e-82 Identity = 158/400 (39.50%), Postives = 241/400 (60.25%), Query Frame = 1
Query: 4615 NMDNKTLRLYPDTRVGKIVRLKDPQEKVAQVLSVH---EEERDLDIEYYDAPNCDSKDLTRRENIKVNQLLRKYDQVFAKHEYDLGQVNILEHEINLTETKPIKIRPYKIPQSLQEPVNKQIKLMQKYNIIRSSKSPYSSPLVVVAKRDGSIRLCNDYRKLNEQTVSDNHPLPLLDYIYDKMKNSRLFTVMDAQKGFYQIKMSENSIPMTGFSTDDDHFEYLMMTFGLKGAPPTFLRAMNIML--MDAHHAMVYIDDIFIFSEDLNKHLEHLEDIYKRLIMANLKVKPSKCKWAEQEVIYVEHVISHDCVKPDPPNTEKVRNFPQPTNVKQIKGFLGLTGYYPQFIRNFSAIAFPLTVLEKKGVKFTWGNEQQEAFNNLKDALVKPPILRFPDFNRQFMV 5799
N+++K L L G I+ P +V+ + SV+ + + I++ N D L++ + KV LL KYD VFA+ +LGQ I++HEI+LT+ P + +PY++P L+ + +QI + II+ SKS Y++P+++V K D S RL D RKLN +T+ DN PLP L+ + D + ++ FT MD GF+Q+ + NS +TG +T+ FEY + FGL+ A +F R M+++L + YIDDI I S D ++HL LE +++RLI ANLKVKPSKC + + E+ ++ H + V PD N + +++ P + K+++ FLGLTG+Y +FI N+S IA PLT L K V F WG E+Q+AF LK+ L+ P L PDF+R F +
Sbjct: 21 NLEDKPLTL----NKGMIIVQALPIHEVSNIESVNTLSDSKISKKIDWDKTLNFD--HLSKEQKSKVINLLNKYDSVFAQDISELGQCGIVQHEIHLTDPVPTRQKPYRVPYQLKAEMKRQINTLLDAGIIQPSKSAYAAPVLLVKKSDDSYRLVADLRKLNSKTIPDNFPLPNLNEMIDMLTGAKYFTTMDLTSGFHQMLLHPNSTHLTGITTEFGLFEYKRLPFGLRNASSSFQRLMSLVLNGLSDLQIGCYIDDIIIGSNDFDQHLARLELVFQRLITANLKVKPSKCAFLQFEISFLGHTVKEGKVLPDSKNLKSIKDSLPPNSKKKVRSFLGLTGFYRKFIPNYSKIALPLTNLTKDKVPFVWGEEEQKAFELLKNYLITEPCLHLPDFSRPFSI 414
BLAST of Retrovirus-related Pol polyprotein from transposon vs. TrEMBL
Match: A0A4Y2MR82 (Retrovirus-related Pol polyprotein from transposon 17.6 (Fragment) OS=Araneus ventricosus OX=182803 GN=pol_3071 PE=4 SV=1) HSP 1 Score: 305.834 bits (782), Expect = 7.405e-82 Identity = 155/376 (41.22%), Postives = 235/376 (62.50%), Query Frame = 1
Query: 4678 KDPQEKVAQVLSVHEEERDLDIEYYDAPNCDSKDLTRRENIKVNQLLRKYDQVFAKHEYDLGQVNILEHEINLTETKPIKIRPYKIPQSLQEPVNKQIKLMQKYNIIRSSKSPYSSPLVVVAKRDGSIRLCNDYRKLNEQTVSDNHPLPLLDYIYDKMKNSRLFTVMDAQKGFYQIKMSENSIPMTGFSTDDDHFEYLMMTFGLKGAPPTFLRAMNIML--MDAHHAMVYIDDIFIFSEDLNKHLEHLEDIYKRLIMANLKVKPSKCKWAEQEVIYVEHVISHDCVKPDPPNTEKVRNFPQPTNVKQIKGFLGLTGYYPQFIRNFSAIAFPLTVLEKKGVKFTWGNEQQEAFNNLKDALVKPPILRFPDFNRQFMV 5799
+D + + VL+ ++E+ DI + + N D L E K+ LL KY VFA+ DLG +I++HEINLT+ PI+ +PY++P +L++ + KQI + II+ S S YS+P+++V K DGS RL D RKLNE+T+ DN PLP L + D + ++ F+ MD GF+Q+KM +S +TG ST+ FEY M FGL+ A +F R M+I+L + VYIDD+ + S+ +++HLE LE +++RL ANLK+KPSKC + ++++ Y+ H + V PD N + +R P KQ++ FLG+ G+Y +FI NFS IA PLT L K+ +KF W +Q+AF L+D L+K P L+ PD ++F +
Sbjct: 252 EDSRPEYVNVLNSNDED---DINWGEKLNLD--HLGSEERAKLLSLLNKYKSVFAQSLKDLGSCDIVQHEINLTDNLPIRQKPYRVPYALKDEMRKQINTLLDAGIIQPSSSAYSAPVMLVKKADGSHRLVADLRKLNEKTIPDNFPLPNLTEMVDMLSGAKYFSSMDLTSGFHQLKMHPSSAHLTGISTEFGLFEYTRMPFGLRNASSSFQRLMSIVLAGLSELQVSVYIDDVIVASKSISEHLERLEIVFQRLTTANLKLKPSKCSFMQKQITYLGHTVKEGMVLPDSRNLDSIRKALPPKTRKQVRSFLGVAGFYRRFIPNFSKIALPLTNLTKEKIKFVWTEVEQQAFETLRDCLIKEPCLKLPDLTKEFSI 622
BLAST of Retrovirus-related Pol polyprotein from transposon vs. TrEMBL
Match: A0A4Y2RJM3 (Retrovirus-related Pol polyprotein from transposon 297 OS=Araneus ventricosus OX=182803 GN=pol_4072 PE=4 SV=1) HSP 1 Score: 286.574 bits (732), Expect = 2.118e-81 Identity = 157/400 (39.25%), Postives = 241/400 (60.25%), Query Frame = 1
Query: 4615 NMDNKTLRLYPDTRVGKIVRLKDPQEKVAQVLSVH---EEERDLDIEYYDAPNCDSKDLTRRENIKVNQLLRKYDQVFAKHEYDLGQVNILEHEINLTETKPIKIRPYKIPQSLQEPVNKQIKLMQKYNIIRSSKSPYSSPLVVVAKRDGSIRLCNDYRKLNEQTVSDNHPLPLLDYIYDKMKNSRLFTVMDAQKGFYQIKMSENSIPMTGFSTDDDHFEYLMMTFGLKGAPPTFLRAMNIML--MDAHHAMVYIDDIFIFSEDLNKHLEHLEDIYKRLIMANLKVKPSKCKWAEQEVIYVEHVISHDCVKPDPPNTEKVRNFPQPTNVKQIKGFLGLTGYYPQFIRNFSAIAFPLTVLEKKGVKFTWGNEQQEAFNNLKDALVKPPILRFPDFNRQFMV 5799
N+++K L L G I+ P +V+ + SV+ + + I++ N D L++ + KV LL KY+ VFA+ +LGQ I++HEI+LT+ P + +PY++P L+ + +QI + II+ SKS Y++P+++V K D S RL D RKLN +T+ DN PLP L+ + D + ++ FT MD GF+Q+ + NS +TG +T+ FEY + FGL+ A +F R M+++L + YIDDI I S D ++HL LE +++RLI ANLKVKPSKC + + E+ ++ H + V PD N + +++ P + K+++ FLGLTG+Y +FI N+S IA PLT L K V F WG E+Q+AF LK+ L+ P L PDF+R F +
Sbjct: 8 NLEDKPLTL----NKGMIIVQALPIHEVSNIESVNTLSDSKNSKKIDWDKTLNFD--HLSKEQKSKVINLLNKYNSVFAQDISELGQCGIVQHEIHLTDPVPTRQKPYRVPYQLKAEMKRQINTLLDAGIIQPSKSAYAAPVLLVKKSDDSYRLVADLRKLNSKTIPDNFPLPNLNEMIDMLTGAKYFTTMDLTSGFHQMLLHPNSTHLTGITTEFGLFEYKRLPFGLRNASSSFQRLMSLVLNGLSDLQIGCYIDDIIIASNDFDQHLARLELVFQRLITANLKVKPSKCAFLQFEISFLGHRVKEGKVLPDSKNLKSIKDSLPPNSKKKVRSFLGLTGFYRKFIPNYSKIALPLTNLTKDKVPFVWGEEEQKAFELLKNYLITEPCLHLPDFSRPFSI 401
BLAST of Retrovirus-related Pol polyprotein from transposon vs. Ensembl Cavefish
Match: ENSAMXT00000044431.1 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02000182.1:892613:897532:1 gene:ENSAMXG00000038169.1 transcript:ENSAMXT00000044431.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 265.774 bits (678), Expect = 1.123e-71 Identity = 127/346 (36.71%), Postives = 206/346 (59.54%), Query Frame = 1
Query: 4771 SKDLTRRENIKVNQLLRKYDQVFAKHEYDLGQVNILEHEINLTETKPIKIRPYKIPQSLQEPVNKQIKLMQKYNIIRSSKSPYSSPLVVVAKRDGSIRLCNDYRKLNEQTVSDNHPLPLLDYIYDKMKNSRLFTVMDAQKGFYQIKMSENSIPMTGFSTDDDHFEYLMMTFGLKGAPPTFLRAMNIMLMDAHH-AMVYIDDIFIFSEDLNKHLEHLEDIYKRLIMANLKVKPSKCKWAEQEVIYVEHVISHDCVKPDPPNTEKVRNFPQPTNVKQIKGFLGLTGYYPQFIRNFSAIAFPLTVLEKKGV--KFTWGNEQQEAFNNLKDALVKPPILRFPDFNRQFMV 5799
+DLT R+ ++ +L+ Y +VF+ GQ ++++H+I ++ RPY++PQ+ +E V +++ M + II S SP+SSP+V+V K DGS R CND+R+LN+ + D++P+P +D + D++ +R + D KG++Q+ +S + P T FST H+ Y + FGL GAP TF R M+++L A Y+DD+ + S +HL HL + L+ A L P+KC E Y+ + I ++P T +++ P+PT Q++ FLGL GYY +F+ NFS+IA PLT + KK + W + ++AF LK+AL P+LR PDF++ F+V
Sbjct: 726 GQDLTPRQKQELRELVDHYTKVFSSLP---GQTHLVQHDIKTPPGFVVRQRPYRLPQARREAVETEVQKMLEMGIIEPSDSPWSSPIVLVPKPDGSWRFCNDFRRLNKVSAFDSYPIPRIDDLIDRLGTARFISTFDLTKGYWQVPLSPQAKPKTAFSTPSGHWHYRFLPFGLHGAPATFQRLMDVVLRPCRAFAAAYLDDVVVHSTSWAEHLVHLSKVLDALLEAGLTANPAKCHLGLSEAQYLGYSIGRGILRPQESKTAAIKDCPRPTTKTQVRAFLGLAGYYRRFVPNFSSIAVPLTDMTKKRQPEEVQWSTDAEKAFTQLKEALTSAPVLRNPDFSQPFIV 1068
BLAST of Retrovirus-related Pol polyprotein from transposon vs. Ensembl Cavefish
Match: ENSAMXT00000030217.1 (pep primary_assembly:Astyanax_mexicanus-2.0:16:12351169:12363564:1 gene:ENSAMXG00000035335.1 transcript:ENSAMXT00000030217.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 263.848 bits (673), Expect = 8.043e-71 Identity = 147/384 (38.28%), Postives = 217/384 (56.51%), Query Frame = 1
Query: 4687 QEKVAQVLSVHEEERDLDIEYYDAPNCDSKDLTRRENIKVNQLLRKYDQVFAKHEYDLGQVNILEHEINLTETKPIKIRPYKIPQSLQEPVNKQIKLMQKYNIIRSSKSPYSSPLVVVAKRDGSIRLCNDYRKLNEQTVSDNHPLPLLDYIYDKMKNSRLFTVMDAQKGFYQIKMSENSIPMTGFSTDDDHFEYLMMTFGLKGAPPTFLRAMNIMLMDA--HHAMVYIDDIFIFSEDLNKHLEHLEDIYKRLIMANLKVKPSKCKWAEQEVIYVEHVISHDCVKPDPPNTEKVRNFPQPTNVKQIKGFLGLTGYYPQFIRNFSAIAFPLTVL--------EKKGVKFT---WGNEQQEAFNNLKDALVKPPILRFPDFNRQFMV 5799
QE VA + S+ E + LD+ P L+ + + LLR+Y +VF++ E D+G +++HEI LT+ P++ R ++P S E V I+ + + ++R S SPYSSP+VVV K+DG++RLC DYR+LN +T D +PLP ++ D + ++LF+ +D G+ Q+ M+E T F T FE+ M FGL AP TF R M + D ++Y+DDI IFS + HLE L+ + RL NLK+K KC + + EV Y+ HVIS V DP V + +PT VK+++ FLG YY +F+ F+ A PL L K GVKF W ++ +EAFN LKD LV P+L + DF + F++
Sbjct: 264 QENVAVMRSLCAEGQPLDLSNLSWPT-----LSLAQEQEGKALLRQYSEVFSQGEGDIGCTTLIQHEIPLTDDAPVRQRYRRLPPSQYEQVKAHIQDLLQREVVRVSCSPYSSPIVVVQKKDGTLRLCVDYRQLNAKTRKDAYPLPRIEESLDALAGAKLFSTLDLTSGYNQVPMAEEDKQKTAFCTPFGLFEFNRMPFGLCNAPSTFQRLMERVFGDERFQSLLLYLDDIVIFSSTFDSHLERLQMVLGRLQQHNLKLKLEKCNFFQNEVRYLGHVISASGVATDPDKITAVSEWKRPTTVKELRSFLGFASYYRRFVDKFAKYAAPLHQLVGALQKTKSKPGVKFLQGHWSDKCEEAFNLLKDKLVTAPVLAYADFAKPFLL 642
BLAST of Retrovirus-related Pol polyprotein from transposon vs. Ensembl Cavefish
Match: ENSAMXT00000054230.1 (pep primary_assembly:Astyanax_mexicanus-2.0:14:19483082:19487098:1 gene:ENSAMXG00000038338.1 transcript:ENSAMXT00000054230.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 258.455 bits (659), Expect = 3.238e-69 Identity = 140/367 (38.15%), Postives = 206/367 (56.13%), Query Frame = 1
Query: 4753 DAPN----CDSKDLTRRENIKVNQLLRKYDQVFAKHEYDLGQVNILEHEINLTETKPIKIRPYKIPQSLQEPVNKQIKLMQKYNIIRSSKSPYSSPLVVVAKRDGSIRLCNDYRKLNEQTVSDNHPLPLLDYIYDKMKNSRLFTVMDAQKGFYQIKMSENSIPMTGFSTDDDHFEYLMMTFGLKGAPPTFLRAMNIMLMDAHHA--MVYIDDIFIFSEDLNKHLEHLEDIYKRLIMANLKVKPSKCKWAEQEVIYVEHVISHDCVKPDPPNTEKVRNFPQPTNVKQIKGFLGLTGYYPQFIRNFSAIAFPLTVL--------EKKG----VKFTWGNEQQEAFNNLKDALVKPPILRFPDFNRQFMV 5799
APN D LT +E V LL+KY+ VF+ H+ DLG N++EHEI L + P++ R +IP S E V I + + ++R S SPY+SP+V+V K+DGS+R+C DYR LN +T D PLP ++ D + +R F+ +D G+ Q+ ++E P T F T FE+ M FGL AP TF R M M D + ++Y+DDI +FS +++HL+ LE + RL LK K SKC + +QEV Y+ HVIS+ V DP E V + +P V +++ FLG YY +F+ F+ +A PL L KKG + W + +++F LK LV P+L + DF+ F++
Sbjct: 243 SAPNGVEAVDLSALTDQEQGVVRSLLQKYNSVFSAHDGDLGCTNLIEHEIPLLDNIPVRQRHRRIPPSDYELVKAHIDQLLEAQVVRESSSPYASPIVLVKKKDGSLRMCVDYRLLNSKTRKDAFPLPRIEESLDALSGARWFSTLDLASGYNQVPVAEQDKPKTAFCTPFGLFEWNRMPFGLCNAPSTFQRLMQRMFGDQQYQSLLLYLDDIIVFSSSVSQHLQRLEVVLGRLQKEGLKAKLSKCVFFKQEVGYLGHVISNKGVSTDPAKIEAVAQWQRPRTVSELRSFLGFASYYRRFVEGFAQLAGPLHKLVAALVGSKTKKGSGQALGMAWTAQCEQSFEALKARLVSAPVLAYADFSLPFIL 609
BLAST of Retrovirus-related Pol polyprotein from transposon vs. Ensembl Cavefish
Match: ENSAMXT00000041754.1 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02001938.1:55959:59870:1 gene:ENSAMXG00000043385.1 transcript:ENSAMXT00000041754.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 256.529 bits (654), Expect = 1.136e-68 Identity = 139/393 (35.37%), Postives = 222/393 (56.49%), Query Frame = 1
Query: 4669 VRLKDPQEKVAQVLSVHEEERDLDIEYYDAPNCDSKDLTRRENIKVNQLLRKYDQVFAKHEYDLGQVNILEHEINLTETKPIKIRPYK-IPQSLQEPVNKQIKLMQKYNIIRSSKSPYSSPLVVVAKRDGSIRLCNDYRKLNEQTVSDNHPLPLLDYIYDKMKNSRLFTVMDAQKGFYQIKMSENSIPMTGFSTDDDHFEYLMMTFGLKGAPPTFLRAMNIMLMDAHH--AMVYIDDIFIFSEDLNKHLEHLEDIYKRLIMANLKVKPSKCKWAEQEVIYVEHVISHDCVKPDPPNTEKVRNFPQPTNVKQIKGFLGLTGYYPQFIRNFSAIAFPLTVL-------EKKG------VKFTWGNEQQEAFNNLKDALVKPPILRFPDFNRQFMV 5799
V ++ E ++S + + EY + D + LT + + L +KY +FAK E DLG +++ HEI L + P++ +PY+ IP S V I+ + +IR S SP+SSP+V+V K+DGS+RLC DYR+LN +T D++PLP ++ D + ++ F+ +D G+ Q+ + E T F T FE+ M FGL AP TF R M + D + ++Y+DD+ +FS+ + +HLE LE+++ RL NLKVK SKC++ + +V Y+ HV+S + V DP E V+ + P+++ +++ FLG YY +F+ FS +A PL L +KG + W E ++AF +LKD L P+L + DFN+ F+V
Sbjct: 230 VSVESCWEDCVAIISTQDIQCTSPTEYVTS---DFEGLTDLQAQRARALFQKYSNIFAKSEGDLGCTSLISHEIPLLDEVPVR-QPYRRIPPSQYSTVKAHIQQLLDSRVIRESSSPFSSPIVLVTKKDGSLRLCVDYRQLNAKTRRDSYPLPRIEESLDALCGAKWFSTLDLASGYNQVPVEEKDKSKTAFCTPFGLFEFNRMPFGLCNAPGTFQRLMERIFGDCRYQSVLLYLDDVIVFSQTVEEHLERLEEVFSRLQKQNLKVKLSKCQFFQHQVSYLGHVVSAEGVTTDPAKIEVVKEWKSPSHLAELRSFLGFASYYRRFVEGFSKLAAPLHRLVGGLSGPRRKGKTPKTSLAAFWDAECEQAFQSLKDRLTSTPVLAYADFNKPFIV 618
BLAST of Retrovirus-related Pol polyprotein from transposon vs. Ensembl Cavefish
Match: ENSAMXT00000045469.1 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02000976.1:426503:430633:1 gene:ENSAMXG00000030479.1 transcript:ENSAMXT00000045469.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 256.144 bits (653), Expect = 1.969e-68 Identity = 151/423 (35.70%), Postives = 231/423 (54.61%), Query Frame = 1
Query: 4615 NMDNKTLRLYPDTRVGK--IVRL----------KDPQEKVAQVLSVHEEERDLDIEYYDAPNCDSKDLTRRENIKVNQLLRKYDQVFAKHEYDLGQVNILEHEINLTETKPIKIRPYKIPQSLQEPVNKQIKLMQKYNIIRSSKSPYSSPLVVVAKRDGSIRLCNDYRKLNEQTVSDNHPLPLLDYIYDKMKNSRLFTVMDAQKGFYQIKMSENSIPMTGFSTDDDHFEYLMMTFGLKGAPPTFLRAMNIMLMDA--HHAMVYIDDIFIFSEDLNKHLEHLEDIYKRLIMANLKVKPSKCKWAEQEVIYVEHVISHDCVKPDPPNTEKVRNFPQPTNVKQIKGFLGLTGYYPQFIRNFSAIAFPL--TVLEKKGVKFT------------WGNEQQEAFNNLKDALVKPPILRFPDFNRQFMV 5799
N+ ++ L P T +G+ +V+L +D Q VA V SV + ERD I++ L+ ++ + LLR++ +F++H DLG +++H I L ++ P++ R ++P S + V I+ + ++ ++R S SPY+SP+VVV K+DGSIRLC DYR+LN +T D PLP ++ D + S+ F+ +D G+ Q+ + E T F T FE+ M FGL AP TF R M + D H ++Y+DDI IFS DL +HL+ L+ + RL NLK+K KC + + V Y+ HVIS V+ DP V ++ +PT VK+++ FLG YY +F+ F+A+A PL V +G K W + +F LKD LV+ P+L F DF R F+V
Sbjct: 250 NVGDQDRWLQPKTVLGELHVVQLMSTPKEVQVHRDDQGHVATVQSV-QAERDSSIDFL---QLSWPALSAQDQEQARALLRRHQNLFSEHAGDLGCTTLVQHSIPLLDSVPVRQRYRRLPPSQYDLVKAHIQELVEHQVVRPSSSPYASPIVVVQKKDGSIRLCVDYRQLNAKTRKDAFPLPRIEESLDALSGSKWFSTLDLASGYNQVPVLEKDKEKTAFCTPFGLFEFNRMPFGLCNAPSTFQRLMERIFGDQSFHTLLLYLDDIVIFSSDLQQHLQRLDMVLSRLQQHNLKLKLEKCHFFQTRVSYLGHVISESGVETDPEKIRAVVDWKRPTTVKEVRSFLGFASYYRRFVEGFAALAAPLHKLVGALQGSKKQPRSKMHSIVIPHWDEVCETSFRALKDRLVRAPVLGFADFTRPFIV 668
BLAST of Retrovirus-related Pol polyprotein from transposon vs. Ensembl Medaka
Match: ENSORLT00000034492.1 (pep primary_assembly:ASM223467v1:15:13490768:13497120:-1 gene:ENSORLG00000024904.1 transcript:ENSORLT00000034492.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 272.322 bits (695), Expect = 2.587e-73 Identity = 130/343 (37.90%), Postives = 209/343 (60.93%), Query Frame = 1
Query: 4780 LTRRENIKVNQLLRKYDQVFAKHEYDLGQVNILEHEINLTETKPIKIRPYKIPQSLQEPVNKQIKLMQKYNIIRSSKSPYSSPLVVVAKRDGSIRLCNDYRKLNEQTVSDNHPLPLLDYIYDKMKNSRLFTVMDAQKGFYQIKMSENSIPMTGFSTDDDHFEYLMMTFGLKGAPPTFLRAMNIMLMDAHH-AMVYIDDIFIFSEDLNKHLEHLEDIYKRLIMANLKVKPSKCKWAEQEVIYVEHVISHDCVKPDPPNTEKVRNFPQPTNVKQIKGFLGLTGYYPQFIRNFSAIAFPLTVLEKKGVK--FTWGNEQQEAFNNLKDALVKPPILRFPDFNRQFMV 5799
LTR + +++Q+ ++ +F+ + G+ + EH I L E KP++ +PY++PQ L +++++ M +I S S + SP+V+V K+DGS+R+C D+RKLN + D +P+P +D + +K+ ++ T +D KG++Q+ ++ +S P T F T F++ +M FGL GAP TF R MN +L + Y+DD+ IFS +HL+HL+ + +L + L + SKC+WA+QE Y+ + + V+P E VRN P+P K+I+ FLGL G+Y +F+ +F+ IA PLT L KG K W E + AFN LK L P+LR PDFN++F+V
Sbjct: 1002 LTREQITQLSQVFQEVSSLFSNNP---GRTTLAEHTIRLKEAKPVRQQPYRVPQQLIGKLHEEVDAMLSSGVIEPSNSEWCSPVVIVTKKDGSLRICIDFRKLNSVSEFDAYPMPRIDDLLEKIGSAAYITTLDMCKGYWQVPLAASSRPYTAFQTPSGLFQFTVMPFGLHGAPATFQRLMNKVLQGCEEFSAAYLDDVVIFSSTWEEHLQHLKRVLGKLKDSGLSLNISKCEWAKQETQYLGYQLGKGEVRPQLDKVEAVRNCPRPKTKKEIRSFLGLAGWYRRFVPDFATIAAPLTALTAKGQKNPLCWTEECERAFNALKACLCSTPVLRSPDFNKRFLV 1341
BLAST of Retrovirus-related Pol polyprotein from transposon vs. Ensembl Medaka
Match: ENSORLT00000030651.1 (pep primary_assembly:ASM223467v1:5:21308959:21315033:-1 gene:ENSORLG00000024220.1 transcript:ENSORLT00000030651.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 260.381 bits (664), Expect = 1.687e-69 Identity = 133/378 (35.19%), Postives = 220/378 (58.20%), Query Frame = 1
Query: 4684 PQEKVAQVLSVHEEERDLDIEYYDAPNCDSKDLTR---RENIKVNQLLRKYDQVFAKHEYDLGQVNILEHEINLTETKPIKIRPYKIPQSLQEPVNKQIKLMQKYNIIRSSKSPYSSPLVVVAKRDGSIRLCNDYRKLNEQTVSDNHPLPLLDYIYDKMKNSRLFTVMDAQKGFYQIKMSENSIPMTGFSTDDDHFEYLMMTFGLKGAPPTFLRAMNIMLMDAHH-AMVYIDDIFIFSEDLNKHLEHLEDIYKRLIMANLKVKPSKCKWAEQEVIYVEHVISHDCVKPDPPNTEKVRNFPQPTNVKQIKGFLGLTGYYPQFIRNFSAIAFPLTVLEKKGVK--FTWGNEQQEAFNNLKDALVKPPILRFPDFNRQFMV 5799
P EK V +V EE DLD + + L+ + K+ L R+ +F+ G+ ++ H I L + +PI+ RPY++PQ L +N +++ M + +I S S +SSP+V+V K+D S+R+C D+RKLN + D +P+P +D + +K+ + T +D KG++Q+ +S P T F T F++ +M FGL GAP TF R M+ +L +H + Y+DD+ I+S +HL+HL + ++L A L + SKC+WA +E Y+ +++ V+P E +RN P+P K+++ FLGL G+Y +F+ F+ IA PLT L +K K TW +E ++AF LK+ L P+L+ P+F+++F+V
Sbjct: 1001 PTEKSLLVRAVKTEE-DLDSDLGALTHSTPPSLSHLPPEQTTKIMDLFRETPSLFSAQP---GRTTLISHSIRLKDGRPIRQRPYRVPQKLVGRLNDEVRKMLELGVIEPSNSEWSSPVVIVPKKDDSLRICIDFRKLNAVSEFDAYPMPRIDDLLEKIGAANFITTLDLCKGYWQVPLSNTCRPYTAFKTPAGLFQFTVMPFGLHGAPATFQRLMDRVLQGCNHCSAAYLDDVVIYSHTWEQHLDHLRLVLRKLQNAGLTLNVSKCEWARKETRYLGYLLGGGEVRPQVDKVEVIRNCPRPRTKKEVRSFLGLAGWYRRFVHQFATIAAPLTALTEKRQKNPVTWTDECEQAFQALKNKLCSCPVLKSPNFDQRFLV 1374
BLAST of Retrovirus-related Pol polyprotein from transposon vs. Ensembl Medaka
Match: ENSORLT00000038047.1 (pep primary_assembly:ASM223467v1:5:20995901:21001966:-1 gene:ENSORLG00000030265.1 transcript:ENSORLT00000038047.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 259.61 bits (662), Expect = 2.714e-69 Identity = 133/378 (35.19%), Postives = 219/378 (57.94%), Query Frame = 1
Query: 4684 PQEKVAQVLSVHEEERDLDIEYYDAPNCDSKDLTR---RENIKVNQLLRKYDQVFAKHEYDLGQVNILEHEINLTETKPIKIRPYKIPQSLQEPVNKQIKLMQKYNIIRSSKSPYSSPLVVVAKRDGSIRLCNDYRKLNEQTVSDNHPLPLLDYIYDKMKNSRLFTVMDAQKGFYQIKMSENSIPMTGFSTDDDHFEYLMMTFGLKGAPPTFLRAMNIMLMDAHH-AMVYIDDIFIFSEDLNKHLEHLEDIYKRLIMANLKVKPSKCKWAEQEVIYVEHVISHDCVKPDPPNTEKVRNFPQPTNVKQIKGFLGLTGYYPQFIRNFSAIAFPLTVLEKKGVK--FTWGNEQQEAFNNLKDALVKPPILRFPDFNRQFMV 5799
P EK V +V EE DLD + + L+ + K+ L R+ +F+ G+ ++ H I L + +PI+ RPY++PQ L +N ++ M + +I S S +SSP+V+V K+D S+R+C D+RKLN + D +P+P +D + +K+ + T +D KG++Q+ +S P T F T F++ +M FGL GAP TF R M+ +L +H + Y+DD+ I+S +HL+HL + ++L A L + SKC+WA +E Y+ +++ V+P E +RN P+P K+++ FLGL G+Y +F+ F+ IA PLT L +K K TW +E ++AF LK+ L P+L+ P+F+++F+V
Sbjct: 1002 PTEKSLLVRAVKTEE-DLDSDLGALTHSTPPSLSHLPPEQTTKIMDLFRETPSLFSAQP---GRTTLISHSIRLKDGRPIRQRPYRVPQKLVGRLNDEVGRMLELGVIEPSNSEWSSPVVIVPKKDDSLRICIDFRKLNAVSEFDAYPMPRIDDLLEKIGAANFITTLDLCKGYWQVPLSNTCRPYTAFKTPAGLFQFTVMPFGLHGAPATFQRLMDRVLQGCNHCSAAYLDDVVIYSHTWEQHLDHLRLVLRKLQNAGLTLNVSKCEWARKETRYLGYLLGGGEVRPQVDKVEVIRNCPRPRTKKEVRSFLGLAGWYRRFVHQFATIAAPLTALTEKRQKNPVTWTDECEQAFQALKNKLCSCPVLKSPNFDQRFLV 1375
BLAST of Retrovirus-related Pol polyprotein from transposon vs. Ensembl Medaka
Match: ENSORLT00000040552.1 (pep primary_assembly:ASM223467v1:6:4563337:4567860:1 gene:ENSORLG00000025739.1 transcript:ENSORLT00000040552.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 259.225 bits (661), Expect = 3.603e-69 Identity = 132/378 (34.92%), Postives = 220/378 (58.20%), Query Frame = 1
Query: 4684 PQEKVAQVLSVHEEERDLDIEYYDAPNCDSKDLTR---RENIKVNQLLRKYDQVFAKHEYDLGQVNILEHEINLTETKPIKIRPYKIPQSLQEPVNKQIKLMQKYNIIRSSKSPYSSPLVVVAKRDGSIRLCNDYRKLNEQTVSDNHPLPLLDYIYDKMKNSRLFTVMDAQKGFYQIKMSENSIPMTGFSTDDDHFEYLMMTFGLKGAPPTFLRAMNIMLMDAHH-AMVYIDDIFIFSEDLNKHLEHLEDIYKRLIMANLKVKPSKCKWAEQEVIYVEHVISHDCVKPDPPNTEKVRNFPQPTNVKQIKGFLGLTGYYPQFIRNFSAIAFPLTVLEKKGVK--FTWGNEQQEAFNNLKDALVKPPILRFPDFNRQFMV 5799
P EK V +V EE DLD + + L+ + ++ L R+ +F+ G+ ++ H I L + +PI+ RPY++PQ L +N +++ M + +I S S +SSP+V+V K+D S+R+C D+RKLN + D +P+P +D + +K+ + T +D KG++Q+ +S P T F T F++ +M FGL GAP TF R M+ +L +H + Y+DD+ I+S +HL+HL + ++L A L + SKC+WA +E Y+ +++ V+P E +RN P+P K+++ FLGL G+Y +F+ F+ IA PLT L +K K TW +E ++AF LK+ L P+L+ P+F+++F+V
Sbjct: 1002 PTEKSLLVRAVKTEE-DLDSDLGALTHSTPPSLSHLPPEQTTQIMDLFRETPSLFSAQP---GRTTLISHSIRLKDGRPIRQRPYRVPQKLVGRLNDEVRKMLELGVIEPSNSEWSSPVVIVPKKDDSLRICIDFRKLNAVSEFDAYPMPRIDDLLEKIGAANFITTLDLCKGYWQVPLSNTCRPYTAFKTPAGLFQFTVMPFGLHGAPATFQRLMDRVLQGCNHCSAAYLDDVVIYSHTWEQHLDHLRLVLRKLQNAGLTLNVSKCEWARKETRYLGYLLGGGEVRPQVDKVEVIRNCPRPRTKKEVRSFLGLAGWYRRFVHQFATIAAPLTALTEKRQKNPVTWTDECEQAFQALKNKLCSCPVLKSPNFDQRFLV 1375
BLAST of Retrovirus-related Pol polyprotein from transposon vs. Ensembl Medaka
Match: ENSORLT00000029819.1 (pep primary_assembly:ASM223467v1:24:6358775:6362914:-1 gene:ENSORLG00000022361.1 transcript:ENSORLT00000029819.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 258.455 bits (659), Expect = 3.952e-69 Identity = 145/422 (34.36%), Postives = 221/422 (52.37%), Query Frame = 1
Query: 4615 NMDNKTLRLYPDTRVGKIVRLKDPQEKVAQVLSVHEEERDLDIEYYDAP-------------NCDSKDLTRRENIKVNQLLRKYDQVFAKHEYDLGQVNILEHEINLTETKPIKIRPYKIPQSLQEPVNKQIKLMQKYNIIRSSKSPYSSPLVVVAKRDGSIRLCNDYRKLNEQTVSDNHPLPLLDYIYDKMKNSRLFTVMDAQKGFYQIKMSENSIPMTGFSTDDDHFEYLMMTFGLKGAPPTFLRAMNIMLMD--AHHAMVYIDDIFIFSEDLNKHLEHLEDIYKRLIMANLKVKPSKCKWAEQEVIYVEHVISHDCVKPDPPNTEKVRNFPQPTNVKQIKGFLGLTGYYPQFIRNFSAIAFPLTVL------------EKKGVKFTWGNEQQEAFNNLKDALVKPPILRFPDFNRQFMV 5799
N+ + +RL+P T VG + A V+S+ +E ++ E + D L+ E KV LL KY VF+ HE DLG +++ HEI L + P++ R +IP S + I + + +IR S SP++SP+V++ K+DG +RLC DYR+LN +T D PLP ++ D + +R F+ +D G++Q+ ++E P T F T FE+ M FGL AP TF R M M + ++Y+DDI +FS + +HLE LE + +RL + LKVK +KC + + +V Y+ HVIS V DP E V N+ PT V Q++ F+G YY +F+ F+ +A PL L +G+ W E Q +F LK L P+L + DF+R F++
Sbjct: 244 NVGSTAVRLHPRTLVGTVA--------PAGVVSLPKEVTEVQSEAAVVAAHAASTLPLAQLESVDLSALSAGEQEKVRALLGKYLTVFSLHEGDLGCTSLITHEIPLVDDAPVRQRYRRIPPSDYVAAKEHINNLLQSQVIRESSSPFASPIVLIRKKDGGLRLCVDYRQLNSRTRKDAFPLPRIEESLDALSGARWFSTLDLASGYHQVAVAEADRPKTAFCTPFGLFEWNRMPFGLCNAPSTFQRLMQRMFGEQQGQSLLLYLDDIIVFSSTIEQHLERLELVLERLQLEGLKVKLAKCAFFQHQVHYLGHVISDQGVSTDPGKVEAVANWEPPTTVFQLRSFIGFASYYRRFVEGFAKLAAPLHRLVAELEGNKVRKKSARGLTNHWTEECQRSFEALKAKLTTTPVLAYADFSRPFIL 657
BLAST of Retrovirus-related Pol polyprotein from transposon vs. Planmine SMEST
Match: SMESG000058681.1 (SMESG000058681.1) HSP 1 Score: 535.413 bits (1378), Expect = 1.670e-168 Identity = 294/426 (69.01%), Postives = 308/426 (72.30%), Query Frame = 1
Query: 1162 RQIDDDSENHPTFKSMMWRRLQQIMRLLKQNWQIPKDPGVNVKKLTVEIREAMRKIPEVMTRADILDMAERFIEEGLTRGKRIMILAMMFKDAFRVIQKDQSRINPELDRMAKVMSDNFEEWMAENLFWTIKGTVKSTFVLDENIS-NNENHGGNPQNMASFANXXXXXXXXXXXXRQVNSMTAYDCSNPSLGKIYSLVDTVDCREAYPDKVTKGEDVEYHVYQETDFYRTRVK*CRLQKATFEYYCGRHSYSVFLEAKLIPRSVPIQVDDCINAFRTSTL*IDNEVTISAEVXXXXXXXXXXXXXXEADGSCVGRTKTRVRDVVNSIVDVEDYSIELREYEGTFEVASGKMMTHPECNVKLGYCRTGAATLVYSTMKEFCELGYLKKTAFTKLNGTRFTSHKYQDGVWGEKKMQHINREDISEKS 2436
+QIDDDSENHP FKSMMWRR QQIMRLLKQ+WQIPKDPGVNVKKLTVEIREAMR ADILDMAERFIE+GLTR K IMILAMMFKD FRVIQKDQSRINPELDRMAKV SDNFE+WM EN FW IKGTVK TFVL+ENIS N N G NPQNM SF NM+ + GEDVEYHVYQETDFYRTRVK CRLQKATF+ TL IDNEVTISAEVGKK GI IT+GG IEADGSCVGRTKTR RDV+NSIVDVEDY IELREYEGTFEVASGKMMTHPECNVKLGYC+TGAATLVYSTM+EFCE GYLKKTAFTKLNG+RFTSHKYQD VWGEKKMQ I REDISEK+
Sbjct: 463 KQIDDDSENHPAFKSMMWRRFQQIMRLLKQDWQIPKDPGVNVKKLTVEIREAMRG-------ADILDMAERFIEKGLTRDKIIMILAMMFKDVFRVIQKDQSRINPELDRMAKVTSDNFEKWMTENRFWAIKGTVKPTFVLNENISTNGGNQGPNPQNMGSFTNMM---------------------------------------------MMMGEDVEYHVYQETDFYRTRVKDCRLQKATFD-----------------------------------TLKIDNEVTISAEVGKKFGITITRGGPIEADGSCVGRTKTRGRDVINSIVDVEDYLIELREYEGTFEVASGKMMTHPECNVKLGYCKTGAATLVYSTMREFCERGYLKKTAFTKLNGSRFTSHKYQDEVWGEKKMQQIKREDISEKA 801
BLAST of Retrovirus-related Pol polyprotein from transposon vs. Planmine SMEST
Match: SMESG000029093.1 (SMESG000029093.1) HSP 1 Score: 401.749 bits (1031), Expect = 2.916e-120 Identity = 240/354 (67.80%), Postives = 258/354 (72.88%), Query Frame = 1
Query: 1219 RLQQIMRLLKQNWQIPKDPGVNVKKLTVEIREAMRKIPEVMTRADILDMAERFIEEGLTRGKRIMILAMMFKDAFRVIQKDQSRINPELDRMAKVMSDNFEEWMAENLFWTIKGTVKSTFVLDENISNN-ENHGGNPQNMASFANXXXXXXXXXXXXRQVNSMTAYDCSNPSLGKIYSLVDTVDCREAYPDKVTKGEDVEYHVYQETDFYRTRVK*CRLQKATFEYYCGRHSYSVFLEAKLIPRSVPIQVDDCINAFRTSTL*IDNEVTISAEVXXXXXXXXXXXXXXEADGSCVGRTKTRVRDVVNSIVDVEDYSIELREYEGTFEVASGKMMTHPECNVKLGYCRTGAATLV 2277
RLQQI+ LLKQ+WQIPK P VNVKKLTVEIREAMRKIPE M ADILD AE FIEEGLTRGK IMILAM+FKDAFRVIQKDQSR+N ELD++ KV SDNFE MAEN FW IK TVK TFVL EN S+N N NPQNM SFANM+MMM VMMGILRQVNSMTAYDCSNPSLGKIY LVDTVD REAYPDKVTKGEDV ++ ++ ++I + TL DNEVTISAEVGKKLG+ IT+ G IEADGSCVGRTKTR RD +NSIVDVEDY IELREYEGTFEVASGKMMTH ECNVK GYC AAT V
Sbjct: 229 RLQQILNLLKQDWQIPKYPLVNVKKLTVEIREAMRKIPEAMREADILDTAESFIEEGLTRGKMIMILAMIFKDAFRVIQKDQSRLNLELDKIVKVTSDNFEVCMAENRFWAIKETVKPTFVLYENFSDNGGNKAANPQNMGSFANMMMMMFVMMGILRQVNSMTAYDCSNPSLGKIYLLVDTVDFREAYPDKVTKGEDVN---------------------------------TMSIKKQIISKQ--------------DTLKKDNEVTISAEVGKKLGLTITRRGPIEADGSCVGRTKTRGRDAINSIVDVEDYFIELREYEGTFEVASGKMMTHSECNVKFGYCEIEAATFV 535 HSP 2 Score: 300.827 bits (769), Expect = 9.001e-86 Identity = 146/163 (89.57%), Postives = 153/163 (93.87%), Query Frame = 3
Query: 3837 TDLEKTPFSPWPKRERQYDTMPTVGMKTMEKVPVYPFSTLEKLKQSYDEQSQPEAERTELEAKRFRENVLGISSICMVATGNLANKPTIKIKVNRHTVHALIDSGSDLTMIEANLLNET*LQAIAPTLTTATGANGQAINVIGILDCELRLCDQKFRHDIKVT 4325
TDLEKTPFSPWPKRE QYDTMPT+G+KT KVPVY FSTLEKLK +YD+QSQPEAER ELEAKRFRENVLGISS MVATGNLANKPTIK+KVNRHTVHALIDSGSDLTMIEANLL+ET +QAI PTLTTATGANGQAINVIGILDCELRLCDQKFRHDIKVT
Sbjct: 536 TDLEKTPFSPWPKRESQYDTMPTLGIKTTAKVPVYSFSTLEKLKPNYDKQSQPEAERIELEAKRFRENVLGISSTFMVATGNLANKPTIKVKVNRHTVHALIDSGSDLTMIEANLLSETEVQAIVPTLTTATGANGQAINVIGILDCELRLCDQKFRHDIKVT 698 HSP 3 Score: 186.422 bits (472), Expect = 6.698e-48 Identity = 90/103 (87.38%), Postives = 95/103 (92.23%), Query Frame = 1
Query: 4612 TNMDNKTLRLYPDTRVGKIVRLKDPQEKVAQVLSVHEEERDLDIEYYDAPNCDSKDLTRRENIKVNQLLRKYDQVFAKHEYDLGQVNILEHEINLTETKPIKI 4920
T MDNKTLR YPD RVGKIV+LKD QE+V QV+SVHEEERD DIEYYDAP+CDSK LTRRENIKVNQLLRKYDQVFAK+EYDLGQVNILEHEINL ETKPIKI
Sbjct: 720 TKMDNKTLRFYPDKRVGKIVKLKDHQEEVVQVMSVHEEERDPDIEYYDAPSCDSKALTRRENIKVNQLLRKYDQVFAKYEYDLGQVNILEHEINLNETKPIKI 822
BLAST of Retrovirus-related Pol polyprotein from transposon vs. Planmine SMEST
Match: SMESG000080881.1 (SMESG000080881.1) HSP 1 Score: 366.311 bits (939), Expect = 8.326e-119 Identity = 195/458 (42.58%), Postives = 294/458 (64.19%), Query Frame = 1
Query: 4429 VFLDRVVTIPPRTETVCFVATHQEMEGDVIFEPKVEFASKYNTPITQNLATXXXXXXXXXXTNMDNKTLRLYPDTRVGKIVRLKDPQEKVAQVLSVHEEERDLDIEYYDAPNCDSKDLTRRENIKVNQLLRKYDQVFAKHEYDLGQVNILEHEINLTETKPIKIRPYKIPQSLQEPVNKQIKLMQKYNIIRSSKSPYSSPLVVVAKRDGSIRLCNDYRKLNEQTVSDNHPLPLLDYIYDKMKNSRLFTVMDAQKGFYQIKMSENSIPMTGFSTDDDHFEYLMMTFGLKGAPPTFLRAMNIMLMDAHHAMVYIDDIFIFSEDLNKHLEHLEDIYKRLIMANLKVKPSKCKWAEQEVIYVEHVISHDCVKPDPPNTEKVRNFPQPTNVKQIKGFLGLTGYYPQFIRNFSAIAFPLTVLEKKGVKFTWGNEQQEAFNNLKDALVKPPILRFPDFNRQFMVM 5802
VFL++ + +P R+E + + + + IFEP + KY P+ + ++++ +P+RI N + K +++ P T++GK+ + + EK ++ +I+ Y P S DLT + + +LL+KY VFAKHEYDLG ++EHEI L + PIK++PY+IP QE ++QIK M+++ IIR S SP+SS + VV K+DG +R C DYRKLN+ T D +P+P+ ++D+M + FTV+D KG+ Q K+ E T FS +E+ ++ FGL GAP TF R MN +L D HA+VYIDDI IFS +HL+ +E +++RL+ ANLK+KPSKC+W + EV+YV H+IS + ++P+P N +K++ +P P NV Q++ FLGL YY +FI++FS +A PL VL KK +F WG QQEAF LK +L+K PILR P+F F++M
Sbjct: 3233 VFLNQTLELPARSEVIYYADVLDVSDDECIFEPNEKLIEKYEIPMCDEVVKVKDQTVPVRIVNQNTKPIQMKPKTKLGKLTKFE--IEKTPKL--------PRNIKIYKQPQVISNDLTESQKWEFTELLKKYKMVFAKHEYDLGLTQVIEHEIPLLDETPIKLKPYRIPYIHQEESDRQIKAMKEFKIIRDSSSPFSSSIAVVKKKDGDLRFCVDYRKLNQVTRKDTYPIPVPQEMFDQMGEVQFFTVIDLNKGYNQFKVKEEDRRKTAFSDGKGLYEFNVLPFGLTGAPATFQRGMNFVLRDIPHALVYIDDIIIFSNTFKEHLKDVETVFRRLLKANLKIKPSKCEWGKSEVVYVGHIISRNGLQPNPENVKKIKEYPIPENVDQVRQFLGLASYYRKFIKSFSHVAQPLNVLLKKQTQFKWGKSQQEAFKLLKKSLIKKPILRCPNFRIPFILM 3680 HSP 2 Score: 83.1889 bits (204), Expect = 8.326e-119 Identity = 58/191 (30.37%), Postives = 95/191 (49.74%), Query Frame = 3
Query: 3870 PKRERQYDTMPTV-GMKTMEK---------VPVYPFSTLEKLKQSYDEQSQPEAERTE-LEAKRFRENVLGI-SSICMVATGNLANKPTIKIKVNRHTVHALIDSGSDLTMIEANLLNET*LQAIAPTLTTATGANGQAINVIGILDCELRLCDQKFRHDIKVTRECMAECIVGMDILKKLKDIVFDCATG 4406
P+ + + MP + G++T+ K P YP L+++K E Q E + E A+ R+N+LG+ S M+ GN +P I I NR V +L+DSGS T++ +LL + PT + +++IG L EL + D + H + V R C++GMD++++L+ I D TG
Sbjct: 3028 PELQFLLEPMPKLSGIETLSKWYTPTFLPTAPKYPTEKLKEMKPV--EHIQFELDNIEPTSAEIERKNMLGLPCSYAMMTLGNKGKQPRINILFNRRKVESLLDSGSSNTIVSDDLLTMEEKSKMKPTSKVIRSMSHNVLSIIGKLKAELIIGDHELVHHVSVMRNSPVGCLIGMDVMEQLQGISLDLKTG 3216 HSP 3 Score: 217.624 bits (553), Expect = 2.763e-110 Identity = 112/307 (36.48%), Postives = 179/307 (58.31%), Query Frame = 1
Query: 1690 QVNSMTAYDCSNPSLGKIYSLVDTVDCREAYPDKVTKGEDVEYHVYQETDFYRTRVK*CRLQKATFEYYCGRHSYSVFLEAKLIPRSVPIQVDDCINAFRTSTL*IDNEVTISAEVXXXXXXXXXXXXXXEADGSCVGRTKTRVRDVVNSIVDVEDYSIELREYEGTFEVASGKMMTHPECNVKLGYCRTGAATLVYSTMKEFCELGYLKKTAFTKLNGTRFTSHKYQDGVWGEKKMQHINREDISEKSTPLVLVSKDPNDAIRLVRKGQKMKCSTTVYETNYKGIYLSHKYIPAAE-KIHTSDVKI 2607
Q MTAYDCS +GKIYS+VD +C E YP K+ DV+Y+VYQE+D R +V+ C ++ TF ++CG+ S++ ++ IPR V + ++C+ AF+T L I+ E+ + A+V +++ + G+I+ DG+C G ++ V +E+Y +LRE+EG F+ +GK+ THP CN++ C+TG + LV+ + C L +LK F +L+G +F + K I + + T VL+S P D +R ++K KC VY TNYKG+Y+S + A+ KIHT+D+K+
Sbjct: 2448 QATGMTAYDCSQTEMGKIYSVVDMAECPEVYPKKLKVENDVKYYVYQESDLRRAKVRECIAKRTTFVFFCGKWSHTSLIKMHAIPRPVEVMPENCLAAFQTEELKINPEIKLKAKVNQRIRETVVVKGVIQQDGTCEGEPYKVNGKIIKQSVVIEEYLTKLREFEGVFDDKTGKLQTHPFCNMRQSNCQTGESILVFDVKTDICNLAHLKTMTFKELSGEQFRESLDNFNI-NYKSNGTIRSTPVWTRKTTPVLMSTLPTDGMRFIKKEATNKCGQMVYATNYKGVYVSKMMVQEAKTKIHTNDIKL 2753 HSP 4 Score: 203.756 bits (517), Expect = 2.763e-110 Identity = 103/229 (44.98%), Postives = 152/229 (66.38%), Query Frame = 3
Query: 2613 YVNNKIDFLYHDLQRQMQEMYQEVVLNDCRLNREIIRNRLAISVANPDLIMPMLM-EHGTFGRIMGEAIYSYQCKIVEVEIAKYDKCTLELPVLYEGKLRFVAPVTHRILKEGEEPQKSTCNPAMSPLYKI-NNHWITLPDRKPPSKPVEILQAIKLTSKVEFRPLNELSKGGVYTPEDIEEARRAIGFPQVRDRGVTEIITRIYKHYDGKLDYNLLFGPDH-YRQAAS 3290
Y NNKID+LYH Q M+ +Y+E++LNDC+LN+EI+RNR+A+++ NP+L+ PML+ E+G F RI GEA+YSY+CK V V+I KY+KCT ELPV GK+RF+ P+T +L E +P+ CN ++PLY++ + WI LPD + P + L+ L V F LN +++ G Y EDIEEA+R + FP ++R ++E+I I + + + F H YR+ AS
Sbjct: 2756 YFNNKIDYLYHFSQNIMENIYREMILNDCKLNKEILRNRMAMAITNPNLVAPMLISENGVFARIFGEALYSYKCKAVTVKIMKYEKCTNELPVSINGKMRFMEPITRILLDEHTKPKFLQCNRLLAPLYRLAQDSWIALPDYRGVRTP-DKLELTNLEYLVNFTSLNRMAQMGFYASEDIEEAQRNLLFPSKKERVISEMIDTILPNGEAR-----FFITHHQYREMAS 2978 HSP 5 Score: 122.865 bits (307), Expect = 2.166e-27 Identity = 80/263 (30.42%), Postives = 127/263 (48.29%), Query Frame = 1
Query: 223 DFMRYPTIPVKPYNGNPGEFPEFMPEYFQMARALGLPEPVMILRLPLYLKGMANEKYNDV---ILANHPVAWNELRVALTNRILPGDATRILRQQFYNRRQNSGQHVGEFAYQIMMLAERVF---GDRARWNEATLALVKDQFWAGLSSAMRNALSLHIRDNFEELTRKAVLIESSIE-----------------------KVNNFAISTNKSD-----------------------IECFNCHKRGHLSKDC--NSKRSNSP 849
D+ +PV+ Y G+P EF +F +Y+ A A G + +M+ RLPLYLKG A E + + ++AN W +L+ AL +++ GD RI+RQ+FYNR Q + V EFAY + LAE+ F ++ + L++DQF G+ ++ AL +NF+EL +KA+ IE +++ K N F ST+ S I+C +C GH+++ C N++R P
Sbjct: 1565 DYASCQKLPVQQYGGDPVEFVDFKADYYMYATAYGWSQSIMVQRLPLYLKGAAREAWQQIDKRLIAND---WTKLKDALAAKLIGGDIKRIMRQKFYNRVQRPDESVSEFAYHLTTLAEKAFEIKPEQVDVVKQVKELLQDQFLTGVRKEIKKALCYVDFNNFDELIKKAMKIELNLKTTQPKAESFTTIDESRDRSVSRIKNNLFQKSTSPSPKFRVKSPSTSPSPQRDRVNLQGRIQCHSCRGYGHMARSCPRNNERFQKP 1824
BLAST of Retrovirus-related Pol polyprotein from transposon vs. Planmine SMEST
Match: SMESG000057446.1 (SMESG000057446.1) HSP 1 Score: 202.601 bits (514), Expect = 3.888e-104 Identity = 107/304 (35.20%), Postives = 174/304 (57.24%), Query Frame = 1
Query: 1699 SMTAYDCSNPSLGKIYSLVDTVDCREAYPDKVTKGEDVEYHVYQETDFYRTRVK*CRLQKATFEYYCGRHSYSVFLEAKLIPRSVPIQVDDCINAFRTSTL*IDNEVTISAEVXXXXXXXXXXXXXXEADGSCVGRTKTRVRDVVNSIVDVEDYSIELREYEGTFEVASGKMMTHPECNVKLGYCRTGAATLVYSTMKEFCELGYLKKTAFTKLNGTRFTSHKYQDGVWGEKKMQHINREDISEKSTPLVLVSKDPNDAIRLVRKGQKMKCSTTVYETNYKGIYLSHKYIPAAE-KIHTSDVKI 2607
MTAYDCS +GKIYS+VD +C +AYP K+ DV+Y+VYQE+D R +V+ C +++ TF ++CG+ S++ ++ I R + + ++C+ AF+T L I+ E+ + A++ ++ + G+I DG+C G + +E+Y ELRE+EG F+ +GK+ THP CN++ C+TG + LV+ C L +LK F +L+G +F + K I + + T VL+S P D++R ++K KC VY TNY+G+Y+S A+ KIHT+D+K+
Sbjct: 998 GMTAYDCSQTEMGKIYSVVDMAECPDAYPKKLKVENDVKYYVYQESDLRRAKVRECIVKRTTFVFFCGKWSHTSLIKMHAISRQLEVMPENCLAAFQTEELKINPEIKLKAKINHRIRETVVVKGVITQDGTCEGE----------PYMVIEEYLTELREFEGVFDDETGKLQTHPFCNMRQSNCQTGESILVFDVKTNVCNLAHLKTMTFKELSGEQFRESPDNFNI-NYKSNGTIRSTPVWTRKTTPVLMSTLPTDSMRFIKKEATNKCGQMVYATNYRGVYVSKMMGHEAKTKIHTNDIKL 1290 HSP 2 Score: 197.978 bits (502), Expect = 3.888e-104 Identity = 99/228 (43.42%), Postives = 149/228 (65.35%), Query Frame = 3
Query: 2613 YVNNKIDFLYHDLQRQMQEMYQEVVLNDCRLNREIIRNRLAISVANPDLIMPMLM-EHGTFGRIMGEAIYSYQCKIVEVEIAKYDKCTLELPVLYEGKLRFVAPVTHRILKEGEEPQKSTCNPAMSPLYKI-NNHWITLPDRKPPSKPVEILQAIKLTSKVEFRPLNELSKGGVYTPEDIEEARRAIGFPQVRDRGVTEIITRIYKHYDGKLDYNLLFGPDHYRQAAS 3290
Y NNKID+LYH Q M+ +Y+E++LNDC+LN+EI+R+R+A+++ NP+L+ PML+ E+G F RI GEA YSY+CK V V+I KY+KCT ELPV GK+RF+ P+T +L E + + CN ++PLY++ + WI LPD + P + L+ L V F LN++++ G Y EDIEEA+R + FP ++R ++E+I I + + + YR+ AS
Sbjct: 1293 YFNNKIDYLYHFSQNIMENIYREMILNDCKLNKEILRSRMAMAITNPNLVAPMLISENGVFARIFGEAFYSYKCKAVTVKIMKYEKCTNELPVSINGKMRFMEPITRILLDEHTKQKILQCNRLLAPLYRLAQDSWIALPDYRGVRTP-DKLELTNLEYLVNFTSLNKMAQMGFYASEDIEEAQRNLLFPSKKERVISEMIDTILPNGEAR----FFITHHQYRETAS 1515 HSP 3 Score: 310.457 bits (794), Expect = 1.898e-100 Identity = 166/458 (36.24%), Postives = 261/458 (56.99%), Query Frame = 1
Query: 4429 VFLDRVVTIPPRTETVCFVATHQEMEGDVIFEPKVEFASKYNTPITQNLATXXXXXXXXXXTNMDNKTLRLYPDTRVGKIVRLKDPQEKVAQVLSVHEEERDLDIEYYDAPNCDSKDLTRRENIKVNQLLRKYDQVFAKHEYDLGQVNILEHEINLTETKPIKIRPYKIPQSLQEPVNKQIKLMQKYNIIRSSKSPYSSPLVVVAKRDGSIRLCNDYRKLNEQTVSDNHPLPLLDYIYDKMKNSRLFTVMDAQKGFYQIKMSENSIPMTGFSTDDDHFEYLMMTFGLKGAPPTFLRAMNIMLMDAHHAMVYIDDIFIFSEDLNKHLEHLEDIYKRLIMANLKVKPSKCKWAEQEVIYVEHVISHDCVKPDPPNTEKVRNFPQPTNVKQIKGFLGLTGYYPQFIRNFSAIAFPLTVLEKKGVKFTWGNEQQEAFNNLKDALVKPPILRFPDFNRQFMVM 5802
VFL++ + +P R+E + + + + IFEP + KY P+ + ++++ +P+RI N + K +++ P TR+GK+ + + EK+ ++ +I+ Y P S DLT + + +LL+KY VFAKHEYDLG ++EHEI L + PIK++PY+IP QE + ++ D +P+P+ ++D+M + FTV+D KG+ Q K+ E T FS +E+ ++ FGL GAP TF R+MN +L D HA+VYIDD+ IFS +HL+ +E +++RL+ A LK+KPSKC+W + EV+YV H+IS + ++P+P N K++ +P P NV Q++ FLGL YY +FI++FS +A L VL KK ++ WG QQEAF LK++L+K PILR P+F F++M
Sbjct: 1770 VFLNQTLELPARSEVIYYADVLDVSDDECIFEPNEKLIEKYEIPMCDEVVKVKDQTVPVRIVNQNTKPIQMKPKTRLGKLTKFE--IEKIPKLPR--------NIKIYKEPQVISNDLTESQKWEFTELLKKYKMVFAKHEYDLGLTQVIEHEIPLLDETPIKLKPYRIPYIHQEEITRK----------------------------------------------DTYPIPVPQEMFDQMGEVQFFTVIDLNKGYNQFKVKEEDRRKTAFSDGKGLYEFNVLPFGLTGAPATFQRSMNFVLRDIPHALVYIDDVIIFSNTFKEHLKDVETVFRRLLKAKLKIKPSKCEWGKSEVVYVGHIISRNGLQPNPENVRKIKEYPIPENVDQVRQFLGLASYYRKFIKSFSHVAQLLNVLLKKQIQSKWGKAQQEAFELLKESLIKKPILRCPNFRIPFILM 2171 HSP 4 Score: 78.1814 bits (191), Expect = 1.898e-100 Identity = 60/204 (29.41%), Postives = 99/204 (48.53%), Query Frame = 3
Query: 3870 PKRERQYDTMPTV-GMKTMEK------VPVYPFSTLEKLKQSYD-EQSQPEAERTE-LEAKRFRENVLGI-SSICMVATGNLANKPTIKIKVNRHTVHALIDSGSDLTMIEANLLNET*LQAIAPTLTTATGANGQAINVIGILDCELRLCDQKFRHDIKVTRECMAECIVGMDILKKLKDIVFDCATGEYI*YRRGFPRPSGH 4451
P+ + + MP + G++T+ K +P P + EKLK+ E Q E + E A+ R+N+LG+ S M+ GN +P I I N V AL+DSGS T++ +LL + PT + +++I L EL + D + H + V R C++GMD++++L++I TG + +G GH
Sbjct: 1565 PELQFLLEPMPKLSGIETLSKWYTPTFLPTAPTYSTEKLKEMKPVEHIQFELDNIEPTSAEIERKNMLGLPCSYAMMTLGNKGKQPRINILFNGRKVEALLDSGSSNTIVSDDLLTIEEKSKMKPTSKVIRSMSHNVLSIIEKLKAELIIGDHELEHYVSVMRNSPVGCLIGMDVMEQLQEISLHLKTGRLM---KGQTDEKGH 1765 HSP 5 Score: 114.39 bits (285), Expect = 7.318e-25 Identity = 81/274 (29.56%), Postives = 126/274 (45.99%), Query Frame = 1
Query: 217 AADFMRYPTIPVKPYNGNPGEFPEFMPEYFQMARALGLPEPVMILRLPLYLKGMANEKYNDV---ILANHPVAWNELRVALTNRILPGDATRILRQQFYNRRQNSGQHVGEFAYQIMMLAERVF---GDRARWNEATLALVKDQFWAGLSSAMRNALSLHIRDNFEELTRKAVLIESSIE-----------------------KVNNFAISTNKS----------------------DIECFNCHKRGHLSKDC----NSKRSNSPGDKLCTRC 873
+ D+ +PV+ Y G+P +F +FM +Y+ A A G + +M+ RL L LKG A E + + +AN W +L+ AL +++ GD RI+RQ+FYNR Q + V EFAY + LA++ F ++ + L++DQF G+ ++ AL +NF+EL +K + IE +++ K N F ST+ S ++C +C K GH C NS RS SP C C
Sbjct: 32 SNDYASCQKLPVQQYGGDPVKFVDFMADYYMYATAYGWSQSIMVQRLRLNLKGAAREAWQQIDKRFIAND---WTKLKDALAAKLIGGDIKRIMRQKFYNRVQRPDESVSEFAYHLTTLAKKAFEIKPEQVDVAKQMKELLQDQFLTGVRKEIKKALCYVDFNNFDELIKKTMKIELNLKTTQPKAESFTTIDESRDRSVSPIKNNLFQKSTSPSPKFRVKFEPRKSTCSPNEERERPVQCSHCQKLGHNINQCWFKNNSGRSPSPVQ--CDHC 300
BLAST of Retrovirus-related Pol polyprotein from transposon vs. Planmine SMEST
Match: SMESG000057446.1 (SMESG000057446.1) HSP 1 Score: 202.601 bits (514), Expect = 4.331e-104 Identity = 108/307 (35.18%), Postives = 175/307 (57.00%), Query Frame = 1
Query: 1699 SMTAYDCSNPSLGKIYSLVDTVDCREAYPDKVTKGEDVEYHVYQETDFYRTRVK*CRLQKATFEYYCGRHSYSVFLEAKLIPRSVPIQVDDCINAFRTSTL*IDNEVTISAEVXXXXXXXXXXXXXXEADGSCVGRTKTRVRDVVNSIVDVEDYSIELREYEGTFEVASGKMMTHPECNVKLGYCRTGAATLVYSTMKEFCELGYLKKTAFTKLNGTRFTSHKYQDGVWGEKKMQHINREDISEKSTPLVLVSKDPNDAIRLVRKGQKMKCSTTVYETNYKGIYLS----HKYIPAAEKIHTSDVKI 2607
MTAYDCS +GKIYS+VD +C +AYP K+ DV+Y+VYQE+D R +V+ C +++ TF ++CG+ S++ ++ I R + + ++C+ AF+T L I+ E+ + A++ ++ + G+I DG+C G + +E+Y ELRE+EG F+ +GK+ THP CN++ C+TG + LV+ C L +LK F +L+G +F + K I + + T VL+S P D++R ++K KC VY TNY+G+Y+S H+ A KIHT+D+K+
Sbjct: 998 GMTAYDCSQTEMGKIYSVVDMAECPDAYPKKLKVENDVKYYVYQESDLRRAKVRECIVKRTTFVFFCGKWSHTSLIKMHAISRQLEVMPENCLAAFQTEELKINPEIKLKAKINHRIRETVVVKGVITQDGTCEGE----------PYMVIEEYLTELREFEGVFDDETGKLQTHPFCNMRQSNCQTGESILVFDVKTNVCNLAHLKTMTFKELSGEQFRESPDNFNI-NYKSNGTIRSTPVWTRKTTPVLMSTLPTDSMRFIKKEATNKCGQMVYATNYRGVYVSKMMGHE---AKTKIHTNDIKL 1290 HSP 2 Score: 197.978 bits (502), Expect = 4.331e-104 Identity = 99/228 (43.42%), Postives = 149/228 (65.35%), Query Frame = 3
Query: 2613 YVNNKIDFLYHDLQRQMQEMYQEVVLNDCRLNREIIRNRLAISVANPDLIMPMLM-EHGTFGRIMGEAIYSYQCKIVEVEIAKYDKCTLELPVLYEGKLRFVAPVTHRILKEGEEPQKSTCNPAMSPLYKI-NNHWITLPDRKPPSKPVEILQAIKLTSKVEFRPLNELSKGGVYTPEDIEEARRAIGFPQVRDRGVTEIITRIYKHYDGKLDYNLLFGPDHYRQAAS 3290
Y NNKID+LYH Q M+ +Y+E++LNDC+LN+EI+R+R+A+++ NP+L+ PML+ E+G F RI GEA YSY+CK V V+I KY+KCT ELPV GK+RF+ P+T +L E + + CN ++PLY++ + WI LPD + P + L+ L V F LN++++ G Y EDIEEA+R + FP ++R ++E+I I + + + YR+ AS
Sbjct: 1293 YFNNKIDYLYHFSQNIMENIYREMILNDCKLNKEILRSRMAMAITNPNLVAPMLISENGVFARIFGEAFYSYKCKAVTVKIMKYEKCTNELPVSINGKMRFMEPITRILLDEHTKQKILQCNRLLAPLYRLAQDSWIALPDYRGVRTP-DKLELTNLEYLVNFTSLNKMAQMGFYASEDIEEAQRNLLFPSKKERVISEMIDTILPNGEAR----FFITHHQYRETAS 1515 HSP 3 Score: 310.071 bits (793), Expect = 2.278e-100 Identity = 166/458 (36.24%), Postives = 261/458 (56.99%), Query Frame = 1
Query: 4429 VFLDRVVTIPPRTETVCFVATHQEMEGDVIFEPKVEFASKYNTPITQNLATXXXXXXXXXXTNMDNKTLRLYPDTRVGKIVRLKDPQEKVAQVLSVHEEERDLDIEYYDAPNCDSKDLTRRENIKVNQLLRKYDQVFAKHEYDLGQVNILEHEINLTETKPIKIRPYKIPQSLQEPVNKQIKLMQKYNIIRSSKSPYSSPLVVVAKRDGSIRLCNDYRKLNEQTVSDNHPLPLLDYIYDKMKNSRLFTVMDAQKGFYQIKMSENSIPMTGFSTDDDHFEYLMMTFGLKGAPPTFLRAMNIMLMDAHHAMVYIDDIFIFSEDLNKHLEHLEDIYKRLIMANLKVKPSKCKWAEQEVIYVEHVISHDCVKPDPPNTEKVRNFPQPTNVKQIKGFLGLTGYYPQFIRNFSAIAFPLTVLEKKGVKFTWGNEQQEAFNNLKDALVKPPILRFPDFNRQFMVM 5802
VFL++ + +P R+E + + + + IFEP + KY P+ + ++++ +P+RI N + K +++ P TR+GK+ + + EK+ ++ +I+ Y P S DLT + + +LL+KY VFAKHEYDLG ++EHEI L + PIK++PY+IP QE + ++ D +P+P+ ++D+M + FTV+D KG+ Q K+ E T FS +E+ ++ FGL GAP TF R+MN +L D HA+VYIDD+ IFS +HL+ +E +++RL+ A LK+KPSKC+W + EV+YV H+IS + ++P+P N K++ +P P NV Q++ FLGL YY +FI++FS +A L VL KK ++ WG QQEAF LK++L+K PILR P+F F++M
Sbjct: 1770 VFLNQTLELPARSEVIYYADVLDVSDDECIFEPNEKLIEKYEIPMCDEVVKVKDQTVPVRIVNQNTKPIQMKPKTRLGKLTKFE--IEKIPKLPR--------NIKIYKEPQVISNDLTESQKWEFTELLKKYKMVFAKHEYDLGLTQVIEHEIPLLDETPIKLKPYRIPYIHQEEITRK----------------------------------------------DTYPIPVPQEMFDQMGEVQFFTVIDLNKGYNQFKVKEEDRRKTAFSDGKGLYEFNVLPFGLTGAPATFQRSMNFVLRDIPHALVYIDDVIIFSNTFKEHLKDVETVFRRLLKAKLKIKPSKCEWGKSEVVYVGHIISRNGLQPNPENVRKIKEYPIPENVDQVRQFLGLASYYRKFIKSFSHVAQLLNVLLKKQIQSKWGKAQQEAFELLKESLIKKPILRCPNFRIPFILM 2171 HSP 4 Score: 78.1814 bits (191), Expect = 2.278e-100 Identity = 60/204 (29.41%), Postives = 99/204 (48.53%), Query Frame = 3
Query: 3870 PKRERQYDTMPTV-GMKTMEK------VPVYPFSTLEKLKQSYD-EQSQPEAERTE-LEAKRFRENVLGI-SSICMVATGNLANKPTIKIKVNRHTVHALIDSGSDLTMIEANLLNET*LQAIAPTLTTATGANGQAINVIGILDCELRLCDQKFRHDIKVTRECMAECIVGMDILKKLKDIVFDCATGEYI*YRRGFPRPSGH 4451
P+ + + MP + G++T+ K +P P + EKLK+ E Q E + E A+ R+N+LG+ S M+ GN +P I I N V AL+DSGS T++ +LL + PT + +++I L EL + D + H + V R C++GMD++++L++I TG + +G GH
Sbjct: 1565 PELQFLLEPMPKLSGIETLSKWYTPTFLPTAPTYSTEKLKEMKPVEHIQFELDNIEPTSAEIERKNMLGLPCSYAMMTLGNKGKQPRINILFNGRKVEALLDSGSSNTIVSDDLLTIEEKSKMKPTSKVIRSMSHNVLSIIEKLKAELIIGDHELEHYVSVMRNSPVGCLIGMDVMEQLQEISLHLKTGRLM---KGQTDEKGH 1765 HSP 5 Score: 114.39 bits (285), Expect = 8.458e-25 Identity = 81/274 (29.56%), Postives = 126/274 (45.99%), Query Frame = 1
Query: 217 AADFMRYPTIPVKPYNGNPGEFPEFMPEYFQMARALGLPEPVMILRLPLYLKGMANEKYNDV---ILANHPVAWNELRVALTNRILPGDATRILRQQFYNRRQNSGQHVGEFAYQIMMLAERVF---GDRARWNEATLALVKDQFWAGLSSAMRNALSLHIRDNFEELTRKAVLIESSIE-----------------------KVNNFAISTNKS----------------------DIECFNCHKRGHLSKDC----NSKRSNSPGDKLCTRC 873
+ D+ +PV+ Y G+P +F +FM +Y+ A A G + +M+ RL L LKG A E + + +AN W +L+ AL +++ GD RI+RQ+FYNR Q + V EFAY + LA++ F ++ + L++DQF G+ ++ AL +NF+EL +K + IE +++ K N F ST+ S ++C +C K GH C NS RS SP C C
Sbjct: 32 SNDYASCQKLPVQQYGGDPVKFVDFMADYYMYATAYGWSQSIMVQRLRLNLKGAAREAWQQIDKRFIAND---WTKLKDALAAKLIGGDIKRIMRQKFYNRVQRPDESVSEFAYHLTTLAKKAFEIKPEQVDVAKQMKELLQDQFLTGVRKEIKKALCYVDFNNFDELIKKTMKIELNLKTTQPKAESFTTIDESRDRSVSPIKNNLFQKSTSPSPKFRVKFEPRKSTCSPNEERERPVQCSHCQKLGHNINQCWFKNNSGRSPSPVQ--CDHC 300 The following BLAST results are available for this feature:
BLAST of Retrovirus-related Pol polyprotein from transposon vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 2
BLAST of Retrovirus-related Pol polyprotein from transposon vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 2
BLAST of Retrovirus-related Pol polyprotein from transposon vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of Retrovirus-related Pol polyprotein from transposon vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 5
BLAST of Retrovirus-related Pol polyprotein from transposon vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 5
BLAST of Retrovirus-related Pol polyprotein from transposon vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 2
BLAST of Retrovirus-related Pol polyprotein from transposon vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of Retrovirus-related Pol polyprotein from transposon vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of Retrovirus-related Pol polyprotein from transposon vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 5
BLAST of Retrovirus-related Pol polyprotein from transposon vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of Retrovirus-related Pol polyprotein from transposon vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of Retrovirus-related Pol polyprotein from transposon vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of Retrovirus-related Pol polyprotein from transposon vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 5
BLAST of Retrovirus-related Pol polyprotein from transposon vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30013261 ID=SMED30013261|Name=Retrovirus-related Pol polyprotein from transposon|organism=Schmidtea mediterranea sexual|type=transcript|length=5804bpback to top protein sequence of SMED30013261-orf-1 >SMED30013261-orf-1 ID=SMED30013261-orf-1|Name=SMED30013261-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=434bp MEGDVIFEPKVEFASKYNTPITQNLATIREERIPIRITNMDNKTLRLYPDback to top protein sequence of SMED30013261-orf-2 >SMED30013261-orf-2 ID=SMED30013261-orf-2|Name=SMED30013261-orf-2|organism=Schmidtea mediterranea sexual|type=polypeptide|length=136bp MMTHPECNVKLGYCRTGAATLVYSTMKEFCELGYLKKTAFTKLNGTRFTSback to top protein sequence of SMED30013261-orf-3 >SMED30013261-orf-3 ID=SMED30013261-orf-3|Name=SMED30013261-orf-3|organism=Schmidtea mediterranea sexual|type=polypeptide|length=512bp MQEMYQEVVLNDCRLNREIIRNRLAISVANPDLIMPMLMEHGTFGRIMGEback to top protein sequence of SMED30013261-orf-4 >SMED30013261-orf-4 ID=SMED30013261-orf-4|Name=SMED30013261-orf-4|organism=Schmidtea mediterranea sexual|type=polypeptide|length=285bp MADAQNLLNNNLTNINNNLPNVNNLPNVNNIPEQPPAADFMRYPTIPVKPback to top protein sequence of SMED30013261-orf-5 >SMED30013261-orf-5 ID=SMED30013261-orf-5|Name=SMED30013261-orf-5|organism=Schmidtea mediterranea sexual|type=polypeptide|length=219bp MMWRRLQQIMRLLKQNWQIPKDPGVNVKKLTVEIREAMRKIPEVMTRADIback to top Annotated Terms
The following terms have been associated with this transcript:
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