Limbin
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30013159 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 15Note: Hover over icons to view figure legend
Homology
BLAST of Limbin vs. TrEMBL
Match: A0A210Q549 (Limbin OS=Mizuhopecten yessoensis OX=6573 GN=KP79_PYT17598 PE=4 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 3.960e-25 Identity = 159/664 (23.95%), Postives = 328/664 (49.40%), Query Frame = 3 Query: 1329 KEILKNSENNKNLEGISAESASELIKNYLDWQQQLQSIKEKEKIRQLGRLDYIFQKRNNFIKLKENEINDTNEVMEKKNEFFVEMINNLKDREELDGRVC-ETILLDYEKYKKDLF---KEMDTSRRDQNDKMLSLLNQKRNEKLNDLKNQHDNEIVNLLASHSA--DNNIKSLS--DDLKNIESKYYEKVLNEENSHDAEGVNEIIKIHNEISTQTKEKLDSEIILLTKSLKSEGVDSGDIRSILDSYDKRFKSLKNTQNKERERQLMEMNEKIRKFKENIDKNVEKQINEKDQLFQSENNIVEELINIQKTLSEDDRDYILKEYNKHKISTQNSIANSFLEQKRKMEEALALRKAKQLKEIDDKHDLKVEELINRKMRVKTKRTQQEIKEESEKELMLDYVNQKLQLSSVGNSKDDLDKELEIIRNELLAERAALVKKKEEEYVALILKVQMLKAKESAELKDQEEKI--FKLQLAALTSSKA----QNSQEIFKVYQNTKENLKIELDKNKEIQESTLKEKLENR--KRNTLRKKTE------------NEPANDDSETIRRKQQSIEDQKLKNEIN---------------MER--SIQNVEKDMLKKCISSSDCSREEVFNLMLEIYPLKSSQEIEELVEE-FCPKSRQPPQNNQLKSG 3182 K +LK+ E + NL E L+ + + Q++L + E +Q +L+ ++R KL E +D ++ + + +N+ R + DG V + + +EK KK++ ++MD RR Q + + L+ + +++ +L+ Q + E+ + + SHSA D + LS + +ESK+ E+ + D E +++ + EISTQT+E L + L +LK++G R ++ + L+ +Q Q++ + E++ + + +++ ++ E+ L + E +V LI Q +S+D+RD IL+E+ K + +N++ + L QKR +EE L ++ +Q+ ++ +K L+ + RK + + E ++E L L + + + L K +LD E+E +R E+L +RA +K +EE ++ +Q+ KA E ++++DQ++ I K+ L + + Q QEI + Y+ ++ L+ L + E LK++L+ R +R + +T+ N+ A + + +Q IE ++++N ++ MER IQ E ++ + IS +E++ N++ ++P K+ ++I++++ + + P+ QP ++ K G Sbjct: 514 KTMLKDLEVDGNLHD---EKVQWLLDEHKESQKRLDLSYDNEISKQRMQLEEKLERRRGLSKLSEQNEDDMSDTLN----YLASNMNDFITRAKKDGIVSPDEAKVMFEKAKKEMIALKEQMDKDRRKQEEDLHKKLSNLKKQRMANLQKQQEGELQSYMKSHSAQTDGPVDPLSLVEGKLQLESKHREEAHKVSDQMDQEHAHDLATLREEISTQTEEDLSNIQTQLINNLKNQGFSEDTARVLIKKHRDAMAKLQESQEANLHNQMVNIQERLERNRADLEMRKAQEKQEQALLREREEKLVNNLITGQMVMSDDERDRILQEHEKQMVKLENNLTLNKLRQKRMLEEKLMEKRDRQMHKLQEKQ-LQQTQAQKRKQENNAEESDDESRKEKTNLLKLQFEQRMVILH---GEKLNLDDEMENVRVEMLKQRALALKNQEERLGGMVAALQVSKAHELSKIEDQQKAINDLKMNLMDDLNERGVLGNQECQEIIERYKEEQDKLQHSLADRQRQHEKALKKRLKQRLQQREKVMAETQEKELQEILSQSKNKVAAKIKKALLLHKQMIEMEQMRNRLDREISQTLRETQRLFEMERLQKIQEQELLVISRLISIGGFEKEDLNNVLRTLFPSKTEEDIKKIMSKIYDPQKMQPAPVSRDKDG 1166
BLAST of Limbin vs. TrEMBL
Match: A0A1S3HPJ5 (trichohyalin-like OS=Lingula unguis OX=7574 GN=LOC106157035 PE=4 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 1.659e-23 Identity = 186/795 (23.40%), Postives = 397/795 (49.94%), Query Frame = 3 Query: 1005 IAEEINQASLKEYNEKAK----------KIAMES----ISL-NKMNLEYLSNNQEEER---ERIMNLTSSTYKEKIESDLAKVFEHQHHDLISQLKIKENLDMEKLKLTQEELLNSQLNDLYLSAVKEILKNSENNKNLEGISAESASELIKNYLDWQQQLQSIKEKEKIRQLGRLDYIFQKRNNFIKLKENEINDTNEVMEKKNEFFVEMINNLKDREELDGRVCETILLDYEKYKKDLFKEM-------DTSRRDQNDKMLSLLNQKRNEKLND---LKNQHDNEIVNLLASHSADNNIKSLSDDLKN--IESKYYEKVLNEENSHDAEGVNEIIKIHNEISTQTKEKLDSEIILLTKSLKSEGVDSGD-IRSILDSYDKRFKSLKNTQNKERERQLMEMNEKIRKFKENIDKNVEKQINEKDQLFQSENNIVEELINIQKTLSEDDRDYILKEYNKHKISTQNSIANSFLEQKRKMEEALALRKAKQLKEIDDKHDLKVEELINRKMRVKTKRTQQEIKEESEKELMLDYVNQKLQLSSVGNSKDDLDKELEIIRNELLAERAALVKKKEEEYVALILKVQMLKAKESAELKDQEEKIFKLQLAALTSSKAQN------SQEIFKVYQNTKENLKIELDKNKEIQESTLKEKL---------------ENRKRNTLRKKTENEPANDDSETIRRKQQS-IEDQK-------------LKNEINME--RSIQNVEKDMLKKCISSSDCSREEVFNLMLEIYPLKSSQEIEELVEEFCPKSRQPPQNNQLKSGI 3185 I+ + +A+LKE+ K K K+AME IS+ NK + + Q+EE+ ER MN S K ++ L K + Q D + LK++++ + EKL+ + + D+ + +I++ E N+ + A +I + Q+++ I + E RQ L+ +R + + E ++ +EV+ E ++++ L+ +E +D D E+Y++++ +EM DT R Q ++ L + + +KL + + Q +E+ A +N+ ++ K + SK+ ++ EN D E E++ + +++ +TKE+L++ LK+ G D I+ IL ++ + L+ Q +RE+Q + K+++ K+ + + E + E++Q+ + E N+ +++++ Q +S+++RD I+KE+ K + +NS+ + L QKR +E+ L ++AK ++ ++ K LK + + +K+ KT ++E + ++ LM + QK L+ + K L++E+E IR +++ ERAA +K +E++ A++ ++Q+ KA+E +++ Q++ IF L+ + + Q +Q + + +Q +E L +L++ KE Q+ L+EKL E++ ++ L+ + A + +++ KQ + +E K +K E NM+ +++Q E + + + + +EV +++ ++P+K ++E +L++ +N + K+G+ Sbjct: 466 ISRQKEEAALKEFMRKVKEMEASMENQYKVAMEEVFRMISIKNKEQISIILKKQKEEKDKLERQMNTASDEEKAEVFEILRKEHDIQQQDAVHLLKLEQDEESEKLRKEFSIKKRAAVKDIQRQCLSQIVEQGELNQ-------QQADWIINEHQKNQEKVDKIYDDEVSRQRAALEEKLTRRRMLASMADGEEDEYSEVLNTLAEQELQVVQKLEKQEIMDED-------DAERYREEIAREMLAAKNRYDTERARQEAELKKRLREAKKQKLAEKAKFQQQELDELQKKQKEEQAQDNVDPIAVIEKQAIMTSKHRAEMTELENQIDLEQTRELLTLREKVTDETKEQLETNRQAFLDKLKNNGFMEDDQIKQILKQHNLQLNKLELAQQTDREKQQENLQRKLKEKKKELQQRREAEKLEQEQIREYEKNLTKKMLDNQVAVSDEERDRIMKEHEKQMVKLENSLTLNKLHQKRMLEKKLTEKRAKHMETLEKKQ-LKETKRVEKKL--KTADEEEEEQHQAAIALMRKHAEQK--LAVLQGDKLKLEEEMEQIREDMIKERAAALKAQEDQLGAMVAEMQLKKAEELSKIDQQQKAIFNLKSSLMEELNTQGVMSDPDTQRVLEKHQEQQEQLNKKLEQQKERQQRLLQEKLSEKMMQREKTMMMEHEDQLKSLLQTTSNKTAARFKAVSLKIKQAAELEAMKNDAVTEMNQKIESMKREFNMKHMQAVQQKELEFISGLVKVGQFNEKEVADMINWLFPMKDTEEKNKLLQMVYQGDDATKKNERPKTGL 1241
BLAST of Limbin vs. TrEMBL
Match: A0A2C9M4A7 (Uncharacterized protein OS=Biomphalaria glabrata OX=6526 GN=106079940 PE=4 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 3.778e-23 Identity = 165/644 (25.62%), Postives = 317/644 (49.22%), Query Frame = 3 Query: 1323 AVKEILKNSENNKNLEG-ISAESASELIKNYLDWQQQLQSIKEKEKIRQLGRLDYIFQKRNNFIKLKENEINDTNEVMEKKNEFFVEMINNLKDREELDGRVCETILLDYEKYKKDLFKEMDTSRRDQNDKMLSLLNQKRNEKLNDLKNQHDNEIVNLLASHSA---DNNIKSLS--DDLKNIESKYYEKVLNEENSHDAEGVNEIIKIHNEISTQTKEKLDSEIILLTKSLKSEGVDSGDIRSILDSYDKRFKSLKNTQNKERERQLMEMNEKIRKFKENIDKNVEKQINEKDQLFQSENNIVEELINIQKTLSEDDRDYILKEYNKHKISTQNSIANSFLEQKRKMEEALALRKAKQLKEIDDKHDLKVEELINRKMRVKTKRTQQEIKEESEKELMLDYVNQKLQLSSVGNSKDDLDKELEIIRNELLAERAALVKKKEEEYVALILKVQMLKAKESAELKDQEEKIFKLQ---LAALTSSKAQNSQEIFKV---YQNTKENLKIELDKNKEIQESTLKEKLENR---KRNTLRKKTENE-------PANDDSETIRRK---------------------QQSIEDQKLKNEINMERSIQNVEKDMLKKCISSSDCSREEVFNLMLEIYPLKSSQEIEELV 3125 +KEI + N+ +G +++ A L+K + Q ++ + E RQ L+ KR E + +D E++ + V ++ +K + L E+ + + K++ EMD ++ L Q + + L + +Q ++ + +A + A D + +S L N++S++ +++ + EN D E E+ ++S KEKL S L + LK++GV I IL ++K K ++ Q +R+ Q +M ++ K K+ + ++ E++ L + E IV++L++ Q +SE+DRD ILKE+ K + +NS+ + L QKR +EE +ALR+A+Q++E+ K + + I + R+ ++E +E KEL L + + Q++ + + +KEL+ IR E++ ERA ++K +EE+ A I +QM KA+E A++++Q++ I L+ L L S ++ E ++ ++ +E L +LDK + QE L+ KL+ R + L KK E E +N + I+R Q++ED+K + ++ IQ E L ++ + E+ N++ ++PL++ + I E++ Sbjct: 452 GIKEIQQQFINDVIKDGDMTSTKAEWLLKQHRQQQDEIAHKFDDEISRQRMILEEKLAKRRTLAHASEVQEDDHKEILNEIASCQVNLVQTIKLAKSLTDEQMESQIEQLKGDLKNVKDEMDKKSELNQQELFKKLTQLKRKALTEKMSQQKLQLQDYMAKNKATETDPPVDPISYVTGLVNLKSQHRQELSDLENQLDEEHARELAIEREKLSELAKEKLKSIEKHLIEKLKAQGVLDDTIERILRKHEKTVKEIEAKQITDRKNQETKMKAELAKRKKEFAEMRAREKQEQNDLRRYETEIVDKLLDSQFAISEEDRDRILKEHEKQLVKLENSLTLNKLRQKRILEEKIALRRAQQMEELQQKQEAE----IVKHRRIAESNGEEEDEETLLKELKLKKKHAEQQMALIQGLDFNFEKELDEIRTEMVKERALMLKSQEEKMGAFIATLQMNKAREMAKIEEQQKAINNLKANLLDDLNSRGILSTPECERIILRHKEEQEELNEKLDKERLKQEKVLRSKLQERLQQREELLVKKQEEEIKMLLEQSSNKYAAKIKRALIIHKNLVEMEKFKNKLQREINQTLEDRKRDFNLQQQKMIQEEELKFLAGLVTIGSFEQHELLNVLRMLFPLRTEEAIIEML 1091
BLAST of Limbin vs. TrEMBL
Match: A0A433U9J5 (Uncharacterized protein (Fragment) OS=Elysia chlorotica OX=188477 GN=EGW08_001740 PE=4 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 2.029e-22 Identity = 136/528 (25.76%), Postives = 263/528 (49.81%), Query Frame = 3 Query: 1725 LNQKRNEKLNDLKNQHDNEIVNLLASHSADN-----NIKSLSDDLKNIESKYYEKVLNEENSHDAEGVNEIIKIHNEISTQTKEKLDSEIILLTKSLKSEGVDSGDIRSILDSYDKRFKSLKNTQNKERERQLMEMNEKI-RKFKENIDKNVEKQINEKDQLFQSENNIVEELINIQKTLSEDDRDYILKEYNKHKISTQNSIANSFLEQKRKMEEALALRKAKQLKEIDDKHDLKVEELINRKMRVKTKRTQQEIKEESEKELMLDYVNQKLQLSSVGNSKDDLDKELEIIRNELLAERAALVKKKEEEYVALILKVQMLKAKESAELKDQEEKIFKLQLAALTSSKAQN------SQEIFKVYQNTKENLKIELDKNKEIQESTLKEKLENR---KRNTLRKKTENE-------PANDDSETIRR-----KQ----------------QSIEDQKLKNEINMERSIQNVEKDMLKKCISSSDCSREEVFNLMLEIYPLKSSQEIEELV----EEFCPKSRQPPQNN 3167 L+Q +++ L + NQ +E+ L S ++ + S D L +++S++ +++ EN D E+ + ++ ++ KE+L++ L + +KSEGV I IL + K L Q R+ Q ++ +++ R+ +E D+ + ++ ++D L Q E +V++L+ Q SE +RD ILKE+ K + +NS+ + L QK+ MEE +A R+A+Q++++ K + E + +RK E ++ E +++ + Q+ ++++ +++ E E IR E+ ERA L+K +EE ALI +QM KA+E A +++Q++ I L+ + A+ +++ V++ +E L +LD + QE L+ KL+ R + N++ ++ E+E N S IRR KQ Q++ED K E+ + Q E L + SR E+ +++ ++P K+ + I +++ +E P + + QNN Sbjct: 651 LSQAKHKALAEKMNQQASELNKYLQSSKSEQSEGPVDPVSYVDGLVSLKSRHRKELCVLENELDESHARELESLRSQAVSKAKEELEALERTLIEKMKSEGVSDSVIDKILTDHKKTMNILSARQLANRQNQEAKLKDELARRKREWEDRRLTERQEQQD-LRQHEAEVVDKLLGSQVAFSEQERDRILKEHEKQMVMFENSLTLNKLRQKQMMEEKIAQRRARQMEDLQQKQN--TELMKHRKYAENNGEEDDEETQDKEIQILRKHAEQR--IAAIQAIDFNVEAEAEEIRVEMTKERALLLKDQEERLGALIASLQMNKAREMARIEEQQKAINSLKANLMDDLNARGILSTPECEKVLNVHKEEQERLSRKLDDQRAKQEQMLQSKLQERLAQRENSMLQRQESEMRMLMESTNNKTSANIRRVILIHKQMVQMEKFRNKMEREISQTLEDTKRDFEMQKQHIFQEQEMKFLAGLVRIGHLSRNELIDVLHMLFPGKTEESILDILSKIYQEESPLNWKDSQNN 1173
BLAST of Limbin vs. TrEMBL
Match: K1PHU8 (Limbin OS=Crassostrea gigas OX=29159 GN=CGI_10004546 PE=4 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 9.013e-22 Identity = 156/642 (24.30%), Postives = 324/642 (50.47%), Query Frame = 3 Query: 1374 ISAESASELIKNYLDWQQQLQSIKEKEKIRQLGRLDYIFQKRNNFIKLKENEINDTNEVMEKKNEFFVEMINNLKDREELDGRVCETILLDYEKYKKDLF---KEMDTSRRDQNDKMLSLLNQKRNEKLNDLKNQHDNEIVNLLASHSADNNIKSLSDDLKNIESKYYEKVLNEENSHDAEGVNEIIKIHNEISTQTKEKLD-SEIILLTKSLKSEGVDSGDIRSILDSYDKRFKSLKNTQNKERERQLMEMNEKIRKFKENIDKNVEKQINEKDQLFQSENNIVEELINIQKTLSEDDRDYILKEYNKHKISTQNSIANSFLEQKRKMEEALALRKAKQLKEIDDKHDLKVEELINRKMRVKTKRTQQEIKEESEK---ELMLDYVNQKLQLSSVGNSKDDLDKELEIIRNELLAERAALVKKKEEEYVALILKVQMLKAKESAELKDQEEKI--FKLQLAALTSSKA----QNSQEIFKVYQNTKENLKIELDKNKEIQE----STLKEKLEN----------RKRNTLRKKTENEPANDDSETI-----------------RRKQQSIEDQKLKNEINMERSIQNVEKDMLKKCISSSDCSREEVFNLMLEIYPLKSSQEIEELVEE-FCPKSRQPPQN 3164 + E A L++ + Q Q++ + ++E RQ L+ +KR KL+E + +D ++V+ +E+IN K ++ + G + K K+D+ + +D R+ Q + L + +KLN +K+Q +E+ + + + LK +E+K+ E+V EEN D + ++ +++E++ K++L +E L+ + + V +L ++ L+ Q +E E+Q +N K+ K + + ++ E++ E++++ + E+ +V++LI+ Q ++SE++RD I+KE+ K + +NS+ + L QKR +EE LA ++A Q+ +++ K ++ E +KMR + + +E E+++ ELM +QK+ + + K ++D ELE ++ E+L ER +K++EE+ A++ +Q+ KA+E A +++Q+ I K L S + Q++ ++ +ENL +L+ K QE LKEK+E R+ L ++N+ A + + R+ Q++ED +L+ E+ + Q E + + ++E+ +++ +YP K+ EI+ +++E + P +Q P++ Sbjct: 551 LVGEKADWLLEEHRKVQAQMEKMYDEEVARQRILLEEKLEKRKALAKLEEQQEDDGSDVLNTMASHQIELINKAKAKK-VGGLTPDEASELIAKAKEDMISLKERLDKDRQKQEMALAKRLGDMKRKKLNQMKSQQKSELDKTFLEFI--HPLLFVETKLK-LEAKHREEVNQEENEIDEDHAEQLRHLNDELTDHAKDELSRAERNLVKRIGEINTVSPDQYEKLLSEHEADVMRLQAQQKRELEKQKANLNAKLAKSRRDWEQRKEQEKAEQEEIRKREDEVVKKLISGQMSMSEEERDRIMKEHEKQMVKVENSLTLNKLRQKRMLEERLAAKRALQMDKLEKKQSVEYE----KKMR-QIEHNGEESDPENQREKLELMKLQFSQKMAV--LQGQKLNIDDELENVKIEMLKERVIALKEQEEKLGAMVAALQVAKAREMALIEEQQAAINNLKSNLIDELSERGILSDPECQKVLDRHKQEQENLNKKLESQKSKQEKELRKRLKEKIEQKEEIMSRAHKREIEALLATSKNKTALKMKQALLAHKHMMEMEKFRNNLDRQIAQTLEDVRLQFEMRRAKETQQEELRFIAGLVRVGSFDQQELIDVLHILYPQKTDTEIQAVMKEIYDPNFQQAPKD 1181
BLAST of Limbin vs. Ensembl Cavefish
Match: lama5 (laminin, alpha 5 [Source:ZFIN;Acc:ZDB-GENE-030131-9823]) HSP 1 Score: 55.4546 bits (132), Expect = 4.829e-7 Identity = 108/498 (21.69%), Postives = 197/498 (39.56%), Query Frame = 3 Query: 897 FSEFNKTLFNIWLNNVNEKYPSRKSKSDSIRDGVYKIAEEINQASLKEYNEKAKKIAMESISLNKMNLEYLSNNQEEERERIMNL--TSSTYKEKIESDLAKVFEHQHHDLISQLKIKENLDMEKLKLTQEELLNSQLNDLYLSAVKEILKNSENNKNLEGISAESASELIKNYLD-WQQQLQSIK--------------EKEKIRQLGRLDYIFQKRNNFIKLKENEINDTNEVMEKKNEFFVEMINNLKDREELDGRVCETILLDYEKYKKDLFKEMDTSRRDQNDKMLSLLNQKRNEKLNDLKNQHDNEIVNLLASHSADNNIKSLSDDLKNIESKYYEKVLNEENSHD--AEGVNEIIKIHNEISTQTKEKLDSEIILLTKSLKSEGVDSGDIRSILDSYDKRFKSLKNTQNKERERQLMEMNEKIRKFKENIDKNVEKQINEKDQLFQSEN----NIVEELINIQKTLSEDDRDYILKEYNKHKISTQNSIAN 2321 F NK++ N +NN N + K++++ + I + L E EKA SL+ L NN +ER NL T Y + IE+ +L + K+ E M + + + D LS ++L ++ + E+ E IKN L+ + Q+L S++ EK Q +LD QK N+ +K K+ E+ DT ++ E +M+ L+D +E +YE+ L ++D +R+ +K+ + L + +H E+++ LA N+ S+ D + + ++ LN +++ VNE + E + E L+ + +L LK + DI++ L+N K+ + LM +K++ + N +I + N ++++ L I+K L E Y +I+ S AN Sbjct: 2192 FHNLNKSIENKSINNYNSSLDGSRDKANTLEKELQTI-----DSDLFELQEKA--------SLSSRKGATLENNTIATKERAQNLLDTVKNYMKDIEAAQNGSQTMDEEEL--KRKLAEVAAMLRDMRFRSTTPQGKQADYELSQANQLLDRVKSEMADRTAANEATVEEIKNKLNKFHQELTSLRDALNEAANNTALASEKNNANQ-KQLDENQQKVND-LKKKQKEVTDTMQMAEDDVAQVNDMLAMLQDSKE-----------EYER----LAAQLDGARQPLAEKVQNFSTSGAKSPLVEEAEKH-AELLDQLA-----KNLSSVISDTN--QDGFIQRALNASRAYNNIINSVNEADNLAKEANKSATEALEPKCVLNWTELKPQ---LQDIKN----------RLQNATTKKSD--LMMDLQKVQNYLNTSQGNTSGEIQAAKSAAEKANSTAADVLDTLDPIKKKLDEWQEQYGSSNMTNDEINKALSEAN 2634
BLAST of Limbin vs. Ensembl Nematostella
Match: EDO31293 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SYD8]) HSP 1 Score: 49.6766 bits (117), Expect = 8.666e-6 Identity = 41/174 (23.56%), Postives = 92/174 (52.87%), Query Frame = 3 Query: 1887 ENSHDAEGVNEIIKIHNEISTQTKEKLDSEIILLTKSLKSEGVDSGDIRSILDSYDKRFKSLKNTQNKERERQLMEMNEKIRKFKENIDKNVEKQINEKDQLFQSENNIVEELINIQKTLSEDDRDYILKEYNKHKISTQNSIANSFLEQKRKMEEALALRKAKQLKEID-DKH 2405 E D E E+ K S + E+ + + + + + ++G+D + +I+D Y + + +ER++ + +++ K + +++ + E+ +L + E IV +LI Q +SE +R+ I++E+ KH + S+ + L Q++ +EE LA R+ +++ E++ D+H Sbjct: 435 EQKADREAAEELEKFDEVYSHEIHEQAKTSLKKIYQDMAAKGLDEAEKNAIIDRYMTEATQQQEKREEERQKNADRVQKRLGKLRRKLEEKAILENEEQTKLRKKEEQIVTDLIVNQANMSEQERNKIIEEHEKHLAELETSMTFNKLRQRQMLEERLAARRKRRMDELERDQH 608
BLAST of Limbin vs. Planmine SMEST
Match: SMESG000017303.1 (SMESG000017303.1) HSP 1 Score: 2209.49 bits (5724), Expect = 0.000e+0 Identity = 1158/1168 (99.14%), Postives = 1163/1168 (99.57%), Query Frame = 3 Query: 24 MFINLFICLVFWINFFSSQSFSVYKSNFDRREYLTGQINNIHFETIRKSVVKRSVSGPFMLTKIFKGDTKNNYNCVILFKLNSSGPEYQNSAFSLHDDISGLTVSNITSQFKDPSFSISNTGSTLEIIYLYSSNNTLEIDVRYNFQISSISSQLNKIVTFNDNRSNLLTEMACISPATFQDNVNANQXXXXXXXXXXXXXXXXXXXXXXTLWKSTSKQDKNEISSEKNSKYENYFLLVDNSQMTIRNDTQGTNEKTFLDALVQDDFRIIEHEVYLLNLNSATKTDEKIKNDFSEFNKTLFNIWLNNVNEKYPSRKSKSDSIRDGVYKIAEEINQASLKEYNEKAKKIAMESISLNKMNLEYLSNNQEEERERIMNLTSSTYKEKIESDLAKVFEHQHHDLISQLKIKENLDMEKLKLTQEELLNSQLNDLYLSAVKEILKNSENNKNLEGISAESASELIKNYLDWQQQLQSIKEKEKIRQLGRLDYIFQKRNNFIKLKENEINDTNEVMEKKNEFFVEMINNLKDREELDGRVCETILLDYEKYKKDLFKEMDTSRRDQNDKMLSLLNQKRNEKLNDLKNQHDNEIVNLLASHSADNNIKSLSDDLKNIESKYYEKVLNEENSHDAEGVNEIIKIHNEISTQTKEKLDSEIILLTKSLKSEGVDSGDIRSILDSYDKRFKSLKNTQNKERERQLMEMNEKIRKFKENIDKNVEKQINEKDQLFQSENNIVEELINIQKTLSEDDRDYILKEYNKHKISTQNSIANSFLEQKRKMEEALALRKAKQLKEIDDKHDLKVEELINRKMRVKTKRTQQEIKEESEKELMLDYVNQKLQLSSVGNSKDDLDKELEIIRNELLAERAALVKKKEEEYVALILKVQMLKAKESAELKDQEEKIFKLQLAALTSSKAQNSQEIFKVYQNTKENLKIELDKNKEIQESTLKEKLENRKRNTLRKKTENEPANDDSETIRRKQQSIEDQKLKNEINMERSIQNVEKDMLKKCISSSDCSREEVFNLMLEIYPLKSSQEIEELVEEFCPKSRQPPQNNQLKSGITLLEAYRKHNEKHKTKASDDSVKIPKISQRNEKNISNYNEKVKVSNEFPNSYDENDGDFVDINEEKIHFKIENKNFAENISNENAENXXXXXXXXXXXXXLDDQENIDDNLEQF 3527 MFINLFICLVFWINFFSSQSFSVYKSNFDRREYLTGQINNIHFETIRKSVVKRSVSGPFMLTKIFKGDTKNNYNCVILFKLNSSGPEYQNSAFSLHDDISGLTVSNITSQFKDPSFSISNTGSTLEIIYLYSSNNTLEIDVRYNFQISSISSQLNKIVTFNDNRSNLLTE ACISPATFQDNVNANQLVILFIILGLVLILLLFFIIIITLWKSTSKQDKNEISSEKNSKYENYFLLVDNSQMTIRNDTQGTNEKTFLDALVQDDFRIIEHEVYLLNLNSATKTDEKIKNDFSEFNKTLFNIWLNNVNEKYPSRKSKSDSIRDGVYKIAEEINQASLKEYNEKAKKIAMESISLNKMNLEYLS NQEEERERIMNLTSSTYKEKIESDLAKVFEHQ HDLISQLKIKENLDMEKLKLTQEELLNSQLNDL+LSAVKEILKNSENNKNLEGISAESASELIKNYLDWQQQLQSIKEKEKIRQLGRLDYIFQKRNNFIKLKENEINDTNEV+EKKNEFFVEMINNLKDREELDGRVCETILLDYEKYKKDLFKEMDTSRRDQNDKMLSLLNQKRNEKLNDLKNQHDNEIVNLL SHSADNNIKSLSDDL NIESKYYEKVLNEENSHDAEGVNEIIKIHNEISTQTKEKLDSEIILLTKSLKSEGVDSGDIRSILDSYDKRFKSLKNTQNKERERQLMEMNEKIRKFKENIDKNVEKQINEKDQLFQSENNIVEEL+NIQKTLSEDDRDYILKEYNKHKISTQNSIANSFLEQKRKMEEALALRKAKQLKEIDDKHDLKVEELINRKMRVKTKRTQQEIKEESEKELMLDYVNQKLQ+SSVGNSKDDLDKELEIIRNELLAERAALVKKKEEEYVALILKVQMLKAKESAELK+QEEKIFKLQLAALTSSKAQNSQEIFKVYQNTKENLKIELDKNKEIQESTLKEKLENRKRNTLRKKTENEPANDDSETIRRKQQSIEDQKLKNEINMERSIQNVEKDMLKKCISSSDCSREEVFNLMLEIYPLKSSQEIEELVEEFCPKSRQPPQNNQLKSGITLLEAYRKHNEKHKTKASDDSVKIPKISQRNEKNISNYNEKVKVSNEFPNSYDENDGDFVDINEEKIHFKIENKNFAENISNENAENKGRKRKKKSRRKKLDDQENIDDNLEQF Sbjct: 1 MFINLFICLVFWINFFSSQSFSVYKSNFDRREYLTGQINNIHFETIRKSVVKRSVSGPFMLTKIFKGDTKNNYNCVILFKLNSSGPEYQNSAFSLHDDISGLTVSNITSQFKDPSFSISNTGSTLEIIYLYSSNNTLEIDVRYNFQISSISSQLNKIVTFNDNRSNLLTETACISPATFQDNVNANQLVILFIILGLVLILLLFFIIIITLWKSTSKQDKNEISSEKNSKYENYFLLVDNSQMTIRNDTQGTNEKTFLDALVQDDFRIIEHEVYLLNLNSATKTDEKIKNDFSEFNKTLFNIWLNNVNEKYPSRKSKSDSIRDGVYKIAEEINQASLKEYNEKAKKIAMESISLNKMNLEYLSKNQEEERERIMNLTSSTYKEKIESDLAKVFEHQRHDLISQLKIKENLDMEKLKLTQEELLNSQLNDLFLSAVKEILKNSENNKNLEGISAESASELIKNYLDWQQQLQSIKEKEKIRQLGRLDYIFQKRNNFIKLKENEINDTNEVIEKKNEFFVEMINNLKDREELDGRVCETILLDYEKYKKDLFKEMDTSRRDQNDKMLSLLNQKRNEKLNDLKNQHDNEIVNLLTSHSADNNIKSLSDDLINIESKYYEKVLNEENSHDAEGVNEIIKIHNEISTQTKEKLDSEIILLTKSLKSEGVDSGDIRSILDSYDKRFKSLKNTQNKERERQLMEMNEKIRKFKENIDKNVEKQINEKDQLFQSENNIVEELMNIQKTLSEDDRDYILKEYNKHKISTQNSIANSFLEQKRKMEEALALRKAKQLKEIDDKHDLKVEELINRKMRVKTKRTQQEIKEESEKELMLDYVNQKLQVSSVGNSKDDLDKELEIIRNELLAERAALVKKKEEEYVALILKVQMLKAKESAELKEQEEKIFKLQLAALTSSKAQNSQEIFKVYQNTKENLKIELDKNKEIQESTLKEKLENRKRNTLRKKTENEPANDDSETIRRKQQSIEDQKLKNEINMERSIQNVEKDMLKKCISSSDCSREEVFNLMLEIYPLKSSQEIEELVEEFCPKSRQPPQNNQLKSGITLLEAYRKHNEKHKTKASDDSVKIPKISQRNEKNISNYNEKVKVSNEFPNSYDENDGDFVDINEEKIHFKIENKNFAENISNENAENKGRKRKKKSRRKKLDDQENIDDNLEQF 1168 The following BLAST results are available for this feature:
BLAST of Limbin vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of Limbin vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of Limbin vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of Limbin vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of Limbin vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of Limbin vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of Limbin vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 0
BLAST of Limbin vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of Limbin vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 1
BLAST of Limbin vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of Limbin vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of Limbin vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 1
BLAST of Limbin vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of Limbin vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 1
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30013159 ID=SMED30013159|Name=Limbin|organism=Schmidtea mediterranea sexual|type=transcript|length=3547bpback to top protein sequence of SMED30013159-orf-1 >SMED30013159-orf-1 ID=SMED30013159-orf-1|Name=SMED30013159-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=1169bp MFINLFICLVFWINFFSSQSFSVYKSNFDRREYLTGQINNIHFETIRKSVback to top Annotated Terms
The following terms have been associated with this transcript:
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