SMED30013053

Overview
NameSMED30013053
Smed IDSMED30013053
Length (bp)1004
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30013053 (SMED30013053) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30013053 (SMED30013053) in cells (dots) of each of the 12 neoblast clusters.

 

back to top

 

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30013053 (SMED30013053) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30013053 (SMED30013053) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

back to top

 

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

back to top
Anatomical Expression

PAGE et. al., 2020



SMED30013053

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 7

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
intestinal phagocyteSMED30013053h1SMcG0016606 Contig2483GPL15192PMID:23079596
Forsthoefel et al., 2012		FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
pigment cellSMED30013053h1SMcG0016606 SmedASXL_003626SmedAsxl_ww_GCZZ01PMID:29158443
He et al., 2017		whole organism asexual adult RNA-sequencing evidence
Smed sexual biotypeSMED30013053h1SMcG0011213 Contig55925newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30013053h1SMcG0011213 Contig55925uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30013053h1SMcG0016606 Contig55925newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30013053h1SMcG0016606 Contig55925uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
gutSMED30013053h1SMcG0016606 dd_Smed_v4_2249_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30013053 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.000902:37208..42402 -4874
Homology
[Close]
BLAST of SMED30013053 vs. Ensembl Human
Match: PEX13 (peroxisomal biogenesis factor 13 [Source:HGNC Symbol;Acc:HGNC:8855])

HSP 1 Score: 68.1662 bits (165), Expect = 3.643e-12
Identity = 65/298 (21.81%), Postives = 144/298 (48.32%), Query Frame = 2 
Query:  101 RPGVGTSQNLVIPPRINRYTQPNAAYNYNSFPNLSNSYSNYYGIGG-------------MNSNFHNPMYGNTINP-----KMDNFITDSFSSINNVVQTFNAFNTIINTAYSAMYTSIATIAGVTDQMNRSKSQLLHIIGSINXXXXXXXXXXXXXXXXSGNLPKLNDLTSFIVDIKNSF-----KSNSPSSANNILSCLFFITIICGPIVIYKFLKSITSSKSDPSLSWNSQVGKSYAAKVKENFVSRNSDELNVYQGEIVTIAPPEFQKEVNWYLVSNLKGE-QGIVPSSFVSVMG 922
            RPG   +   V PP + R +Q   + + N+F    +S+S+ YG  G              N   +N +  + + P     + +     +F SI ++V  F + + +++  +SA+Y S   +  V +  +R K     +  +   ++ I+ +   L+R+L   L + ++      + + +      +  + +SA +    LFF  I+ GP +I+K L + +   +D S++W S       A+ + +F + + +E++   G+++ +A  E Q +V  +L+++L G+  G++P+++V ++G
Sbjct:   42 RPGQ-PALTRVPPPILPRPSQQTGSSSVNTFRPAYSSFSSGYGAYGNSFYGGYSPYSYGYNGLGYNRLRVDDLPPSRFVQQAEESSRGAFQSIESIVHAFASVSMMMDATFSAVYNSFRAVLDVANHFSRLKIHFTKVFSAFALVRTIRYLYRRLQRML--GLRRGSENEDLWAESEGTVACLGAEDRAATSAKSWPIFLFFAVILGGPYLIWKLLSTHSDEVTD-SINWASGEDDHVVARAEYDFAAVSEEEISFRAGDMLNLALKEQQPKVRGWLLASLDGQTTGLIPANYVKILG 335
[Close]
BLAST of SMED30013053 vs. Ensembl Zebrafish
Match: pex13 (peroxisomal biogenesis factor 13 [Source:ZFIN;Acc:ZDB-GENE-040426-1544])

HSP 1 Score: 69.3218 bits (168), Expect = 9.822e-13
Identity = 53/229 (23.14%), Postives = 120/229 (52.40%), Query Frame = 2 
Query:  311 SFSSINNVVQTFNAFNTIINTAYSAMYTSIATIAGVTDQMNRSK---SQLLHIIGSINXXXXXXXXXXXXXXXXSGNLPKLNDLTSFIVDIKNSFKSNSPSSA-------NNILSC---LFFITIICGPIVIYKFLKSITSSKSDPSLSWNSQVGKSYAAKVKENFVSRNSDELNVYQGEIVTIAPPEFQKEVNWYLVSNLKGE-QGIVPSSFVSVMGVLXXXXXXETE 955
            +F SI ++V  F++ + +++  +SA+Y S   +  V +  +R +   +++L     +  L+ + + L  L  +  G+  +++DL +      +   ++    A       N++ S    LFF  ++ GP +I++ L S   ++ + + +W S       A+V+ +F + + +E++V  G+++ +AP E Q  V  +L++++ G+  G+VP+++V V+G     K+ E E
Sbjct:  123 AFQSIESIVHAFSSVSMMMDATFSAVYNSFRAVLDVANHFSRLRIHFTKVLSAFALVRTLRYLYRRLQRLMGLRQGS--EVDDLWADSAASSSVVSASGARGAGVEEPGVNSVKSWPIFLFFAVVLGGPYLIWRLLSSAEGAEEN-ATNWASGEDDHVVARVEYDFTAASEEEISVQAGDMLNLAPKEQQPRVRGWLLASVDGQTTGLVPANYVKVLGRRRGRKHAELE 348
[Close]
BLAST of SMED30013053 vs. Ensembl Xenopus
Match: itgbl1 (integrin subunit beta like 1 [Source:Xenbase;Acc:XB-GENE-989418])

HSP 1 Score: 66.6254 bits (161), Expect = 1.192e-11
Identity = 72/303 (23.76%), Postives = 143/303 (47.19%), Query Frame = 2 
Query:  101 RPGVGTSQNLVIPPRINRYTQPNAAYN-------YNSF-PNLSN-------SYSNY-YGIGGMNSNFHNPMYGNTINP-----KMDNFITDSFSSINNVVQTFNAFNTIINTAYSAMYTSIATIAGVTDQMNRSKSQ------LLHIIGSINXXXXXXXXXXXXXX-XXSGNLPKLNDLTSFIVDIKNSFKSNSPSSANNILSCLFFITIICGPIVIYKFLKSITSSKSDPSLSWNSQVGKSYAAKVKENFVSRNSDELNVYQGEIVTIAPPEFQKEVNWYLVSNLKGE-QGIVPSSFVSVMG 922
            RPG  T    V PP + R +Q   +         YNSF P+  +        YS Y YG GG     +N      I P     + +     +F SI ++V  F++ + +++  +SA+Y S   +  V +  +R K        +  ++ +I FL    + LL L++   + +L   +  T     +K+   +NS   A +    +FF  I+ GP +I+K L +     ++ +++W S        + + +F + + +E++ + G+++ +AP E Q ++  +L+ ++ G+  G VP+++V ++G
Sbjct:   37 RPGQPT-LTRVAPPVLPRPSQQTGSTGLSTYRPAYNSFSPSFGSYGSSFYGGYSPYSYGYGGALG--YNRFQAEDIPPSRFVRQAEESSRGAFQSIESIVHAFSSVSMMMDATFSAVYNSFRAVLDVANHFSRMKVHFTNVFSVFALVRTIRFLYRRLQRLLGLRKNSETEDLWSESAGTVANAGVKDGQATNS---AKSWPIFMFFAVILGGPYLIWKLLSACNEEVNNENVNWASGEDDHVVGRAEYDFTAASEEEISFHAGDMLNLAPKEQQPKIRGWLLGSVDGQTTGFVPANYVRILG 333
[Close]
BLAST of SMED30013053 vs. Ensembl Mouse
Match: Pex13 (peroxisomal biogenesis factor 13 [Source:MGI Symbol;Acc:MGI:1919379])

HSP 1 Score: 66.2402 bits (160), Expect = 1.117e-11
Identity = 66/298 (22.15%), Postives = 141/298 (47.32%), Query Frame = 2 
Query:  101 RPGVGTSQNLVIPPRINRYTQPNAAYNYNSFPNLSNSYSNYYGIGG-------------MNSNFHNPMYGNTINP-----KMDNFITDSFSSINNVVQTFNAFNTIINTAYSAMYTSIATIAGVTDQMNRSKSQLLHIIGSINXXXXXXXXXXXXXXXXSGNLPKLNDLTSFIVDIKN-----SFKSNSPSSANNILSCLFFITIICGPIVIYKFLKSITSSKSDPSLSWNSQVGKSYAAKVKENFVSRNSDELNVYQGEIVTIAPPEFQKEVNWYLVSNLKGE-QGIVPSSFVSVMG 922
            RPG  T    V PP + R +Q   + N N+F    +S+S+ YG  G              N    N +  + + P     + +     +F SI ++V  F + + +++  +SA+Y S   +  V +  +R K     +  +   ++ I+ +   L+ ++   L + ++      + +      S +  + +SA +    LFF  I+ GP +I+K L +     +D + +W S       A+ + +FV+ + +E++   G+++ +A  E Q +V  +L+++L G+  G++P+++V ++G
Sbjct:   44 RPGQPTLTR-VPPPILPRPSQQTGSNNVNTFRPAYSSFSSGYGAYGNSFYGSYSPYSYGYNGLGFNRLRVDDLPPSRFVQQAEESSRGAFQSIESIVHAFASVSMMMDATFSAVYNSFRAVLDVANHFSRLKIHFTKVFSAFALVRTIRYLYRRLQWMM--GLRRGSENEDLWAESEGTVACLSAEDQATNSAKSWPIFLFFAVILGGPYLIWKLLSTHNDEVTD-NTNWASGEDDHVVARAEYDFVAVSDEEISFRAGDMLNLALKEQQPKVRGWLLASLDGQTTGLIPANYVKILG 337
[Close]
BLAST of SMED30013053 vs. UniProt/SwissProt
Match: sp|Q0P5B1|PEX13_BOVIN (Peroxisomal membrane protein PEX13 OS=Bos taurus OX=9913 GN=PEX13 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 8.716e-12
Identity = 63/311 (20.26%), Postives = 136/311 (43.73%), Query Frame = 2 
Query:  101 RPGVGTSQNLVIPPRINRYTQPNAAYNYNSFPNLSNSYSNYYGIGG-------------MNSNFHNPMYGNTINP-----KMDNFITDSFSSINNVVQTFNAFNTIINTAYSAMYTSIATIAGVTDQMNRSKSQLLHIIGSINXXXXXXXXXXXXXXXXSGNLPKLNDLTSFIVDIKNSFKSNSP-SSANNILSCL-----------------FFITIICGPIVIYKFLKSITSSKSDPSLSWNSQVGKSYAAKVKENFVSRNSDELNVYQGEIVTIAPPEFQKEVNWYLVSNLKGE-QGIVPSSFVSVMG 922
            RPG  T    V PP + R +Q   + N N+F    +S+S+ YG  G              N   +N +  + + P     + +     +F SI ++V  F + + +++  +SA+Y S   +  V +  +R K     +  +   ++                +  L     +++ ++   ++    + +   ++CL                 FF  I+ GP +I+K L + +   +D S +W S       A+ + +FV+ + +E++   G+++ +A  E Q  V  +L+++L G+  G++P+++V ++G
Sbjct:   42 RPGQPTLTR-VPPPILPRPSQQTGSGNLNTFRPAYSSFSSGYGAYGNSFYGSYSPYSYGYNGLGYNRLRIDDLPPSRFVQQAEESSRGAFQSIESIVHAFASVSMMMDATFSAVYNSFRAVLDVANHFSRLKIHFTKVFSAFALVR---------------TIRYLYRRLQWMIGLRRGLENEDLWAESEGTVACLGAEDRAANSAKSWPIFLFFAVILGGPYLIWKLLSTHSDEVTD-STNWASGEDDHVVARAEYDFVAVSEEEISFRAGDMLNLALKEQQPRVRGWLLASLDGQTTGLIPANYVKILG 335
[Close]
BLAST of SMED30013053 vs. UniProt/SwissProt
Match: sp|Q92968|PEX13_HUMAN (Peroxisomal membrane protein PEX13 OS=Homo sapiens OX=9606 GN=PEX13 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 1.750e-11
Identity = 65/298 (21.81%), Postives = 144/298 (48.32%), Query Frame = 2 
Query:  101 RPGVGTSQNLVIPPRINRYTQPNAAYNYNSFPNLSNSYSNYYGIGG-------------MNSNFHNPMYGNTINP-----KMDNFITDSFSSINNVVQTFNAFNTIINTAYSAMYTSIATIAGVTDQMNRSKSQLLHIIGSINXXXXXXXXXXXXXXXXSGNLPKLNDLTSFIVDIKNSF-----KSNSPSSANNILSCLFFITIICGPIVIYKFLKSITSSKSDPSLSWNSQVGKSYAAKVKENFVSRNSDELNVYQGEIVTIAPPEFQKEVNWYLVSNLKGE-QGIVPSSFVSVMG 922
            RPG   +   V PP + R +Q   + + N+F    +S+S+ YG  G              N   +N +  + + P     + +     +F SI ++V  F + + +++  +SA+Y S   +  V +  +R K     +  +   ++ I+ +   L+R+L   L + ++      + + +      +  + +SA +    LFF  I+ GP +I+K L + +   +D S++W S       A+ + +F + + +E++   G+++ +A  E Q +V  +L+++L G+  G++P+++V ++G
Sbjct:   42 RPGQ-PALTRVPPPILPRPSQQTGSSSVNTFRPAYSSFSSGYGAYGNSFYGGYSPYSYGYNGLGYNRLRVDDLPPSRFVQQAEESSRGAFQSIESIVHAFASVSMMMDATFSAVYNSFRAVLDVANHFSRLKIHFTKVFSAFALVRTIRYLYRRLQRML--GLRRGSENEDLWAESEGTVACLGAEDRAATSAKSWPIFLFFAVILGGPYLIWKLLSTHSDEVTD-SINWASGEDDHVVARAEYDFAAVSEEEISFRAGDMLNLALKEQQPKVRGWLLASLDGQTTGLIPANYVKILG 335
[Close]
BLAST of SMED30013053 vs. UniProt/SwissProt
Match: sp|Q9D0K1|PEX13_MOUSE (Peroxisomal membrane protein PEX13 OS=Mus musculus OX=10090 GN=Pex13 PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 7.813e-11
Identity = 66/298 (22.15%), Postives = 141/298 (47.32%), Query Frame = 2 
Query:  101 RPGVGTSQNLVIPPRINRYTQPNAAYNYNSFPNLSNSYSNYYGIGG-------------MNSNFHNPMYGNTINP-----KMDNFITDSFSSINNVVQTFNAFNTIINTAYSAMYTSIATIAGVTDQMNRSKSQLLHIIGSINXXXXXXXXXXXXXXXXSGNLPKLNDLTSFIVDIKN-----SFKSNSPSSANNILSCLFFITIICGPIVIYKFLKSITSSKSDPSLSWNSQVGKSYAAKVKENFVSRNSDELNVYQGEIVTIAPPEFQKEVNWYLVSNLKGE-QGIVPSSFVSVMG 922
            RPG  T    V PP + R +Q   + N N+F    +S+S+ YG  G              N    N +  + + P     + +     +F SI ++V  F + + +++  +SA+Y S   +  V +  +R K     +  +   ++ I+ +   L+ ++   L + ++      + +      S +  + +SA +    LFF  I+ GP +I+K L +     +D + +W S       A+ + +FV+ + +E++   G+++ +A  E Q +V  +L+++L G+  G++P+++V ++G
Sbjct:   44 RPGQPTLTR-VPPPILPRPSQQTGSNNVNTFRPAYSSFSSGYGAYGNSFYGSYSPYSYGYNGLGFNRLRVDDLPPSRFVQQAEESSRGAFQSIESIVHAFASVSMMMDATFSAVYNSFRAVLDVANHFSRLKIHFTKVFSAFALVRTIRYLYRRLQWMM--GLRRGSENEDLWAESEGTVACLSAEDQATNSAKSWPIFLFFAVILGGPYLIWKLLSTHNDEVTD-NTNWASGEDDHVVARAEYDFVAVSDEEISFRAGDMLNLALKEQQPKVRGWLLASLDGQTTGLIPANYVKILG 337
[Close]
BLAST of SMED30013053 vs. TrEMBL
Match: T2M8C4 (Peroxisomal membrane protein PEX13 (Fragment) OS=Hydra vulgaris OX=6087 GN=PEX13 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.321e-18
Identity = 82/295 (27.80%), Postives = 143/295 (48.47%), Query Frame = 2 
Query:  134 IPPRINRYT-----QPNAAYNYNSFPNLSNSYSNYYGIGGMNSNFHNPMY-----------GNTINPKMDNFITDSFSSINNVVQTFNAFNTIINTAYSAMYTSIATIAGVTDQMNRSKSQLLHIIGS-INXXXXXXXXXXXXXXXXSGNLPKLNDLTSFIVDIKNSFKSNSPSSANNILSCLFFITIICGPIVIYKFLKSITSSKSDPSLSWNSQVGKSYAAKVKENFVSRNSDELNVYQGEIVTIAPPEFQKEVNWYLVSNLKGEQGIVPSSFVSVMGVLXXXXXXETE*NVV 967
            IPPR N Y+     Q   A  YNS          Y G GGM    +NPM            G+ +N  ++N   ++F S+ +VVQ F++ + ++ +   A   SI  IA V DQ++  +  L +   S I  +  + + LL   R+  G  P+       I D   +  S+      +    +FF  ++ GP +++KFL++++S   D    W   VG+ + A+ K NF + N DEL+  +G+I+ IAP   Q  V  +L++++  ++G++P+++V + G L       TE + +
Sbjct:   45 IPPRHNNYSSTIGMQSPYALGYNS--------GMYNGYGGM----YNPMTAYSYRGNIAGDGSVLN-GVENVTRNAFQSVESVVQAFSSVSMMLESTLFAAQNSIRAIASVADQISGLREHLFNSAYSFIRTINTLLRKLLVTVRLQKGLTPEE------IWDQNAAISSSETIGTKHWPLLIFFGIMLGGPWLLWKFLQNLSSC--DNVDDWQKGVGEHFLAEAKYNFQAGNRDELSFRKGDIIRIAPKACQPHVRGWLLASIDKKKGLIPANYVQIKGKLPSQPKTFTECDAI 318
[Close]
BLAST of SMED30013053 vs. TrEMBL
Match: A0A3M7S6H7 (Peroxisome biogenesis factor 13 OS=Brachionus plicatilis OX=10195 GN=BpHYR1_017733 PE=4 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.644e-17
Identity = 84/293 (28.67%), Postives = 143/293 (48.81%), Query Frame = 2 
Query:  134 IPPRINR---------YTQPNAAYNYNSFPNLSNSYSNY--------YGIGGMNSNFHNPMYGNTINPKMDNFITDSFSSINNVVQTFNAFNTIINTAYSAMYTSIATIAGVTDQMNRSKSQL------LHIIGSINXXXXXXXXXXXXXXXXSGNLPKLNDLTSF------IVDIKNSFKSNSPSSANNILSCLFFITIICGPIVIYKFLKSITSSKSDPSLSWNSQVGKSYAAKVKENFVSRNSDELNVYQGEIVTIAPPEFQKEVNWYLVSNLKGE-QGIVPSSFVSVMG 922
            IPPR N+         +T  +    Y+S+  L NSY NY        YGIGG NS+       N+     +     +F SI +VVQ F+A + +  + Y A+Y S   + GV DQ  R K+ L      L ++  + FL      +L +      N P   D++        + + +   K N+    N  L  +F   ++ GP +I+K L SI S+K D SL W S     + A  + ++ + N+DE++  +G+ + IAP EFQ ++  +L+ ++ G+  GI+P++++ ++G
Sbjct:   40 IPPRTNQQISNAIQSNFTPTSYHPPYSSYSGL-NSY-NYSAPFNTASYGIGGYNSS-------NSFLRAAEENSRGAFQSIESVVQAFSAVSAMFESTYYAVYNSFRAVVGVADQFYRLKTHLSGILSALAVVRVVKFLYKKCVRMLRMAAHRITNRPIAEDISDLWNESKILTESERFIKENTKRPTNWPL-VMFLAVVVGGPWLIWKILSSIESNKDD-SL-WMSAKIDHFIAVSEFDYDALNNDEISFRKGQKIIIAPKEFQPKLRGWLLGSIDGKTAGIMPANYLKILG 320
[Close]
BLAST of SMED30013053 vs. TrEMBL
Match: A0A2R5L9J5 (Putative peroxisomal bioproteinsis protein peroxin OS=Ornithodoros turicata OX=34597 PE=4 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.907e-16
Identity = 57/205 (27.80%), Postives = 111/205 (54.15%), Query Frame = 2 
Query:  311 SFSSINNVVQTFNAFNTIINTAYSAMYTSIATIAGVTDQMNRSKSQLLHIIGSINXXXXXXXXXXXXXXXXSGNLPKLNDLTSFIVDIKNSFKSNSPSSANNILSCLFFITIICGPIVIYKFLKSITSSKSDPSLSWNSQVGKSYAAKVKENFVSRNSDELNVYQGEIVTIAPPEFQKEVNWYLVSNLKGE-QGIVPSSFVSVMG 922
            +F S+  +VQ F +   ++ ++Y A+ TS   + GV DQ +R K  L  II ++  ++ ++ ++     +L      L +   F  D+     +NSPS+   ++   F   ++C P +++K + S TS+       W S   + YAA    +FV+ ++ EL+++ G+ + +AP E Q  V  +L++++ GE  G+VP+++V V+G
Sbjct:  126 AFQSVEALVQAFGSVAMMLESSYHALVTSFRAVVGVADQASRLKDSLGRIISALALVRALRWMVRRTLAMLG-----LVEQAKF-QDLSGMPSNNSPSAWPVMV---FLGFVVCAPWLLWKMVSSATSAAG----RWASGQDEHYAAVATFDFVAVSTAELSLHAGQEIRLAPRELQPAVKGWLLASIDGETTGLVPANYVRVLG 317
[Close]
BLAST of SMED30013053 vs. TrEMBL
Match: A0A553NFE1 (SH3 domain-containing protein OS=Tigriopus californicus OX=6832 GN=TCAL_04000 PE=4 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.679e-16
Identity = 68/246 (27.64%), Postives = 124/246 (50.41%), Query Frame = 2 
Query:  206 NSYSNYYGIGGMNSNFHNPMYGNTINPKMDNFITD----SFSSINNVVQTFNAFNTIINTAYSAMYTSIATIAGVTDQMNRSKSQLLHIIGSINXXXXXXXXXXXXXXXXSGNLPKLN-DLTSFIVDIKNSFKSNSPSSANNILSCLFFITIICGPIVIYKFLK-SITSSKSDPSLSWNSQVGKSYAAKVKENFVSRNSDELNVYQGEIVTIAPPEFQKEVN-WYLVSNLKGEQGIVPSSFVSVMG 922
            NS   Y G G    +F     G+T  P+   F  +    +F +I ++VQ+F++ + +  + Y A+Y+S   I GV +Q ++ K +L  I+ S+  ++ ++K+ + L    +     L  DL        +S   + P    N    L+   ++  P  I+K LK     +K + S  W+  VG+ Y AK +  ++++NS++L + + E + IAP   Q  V  W L +N  G+ G+VP+++V V+G
Sbjct:   56 NSIPPYGGYGYNQRDFE----GDT--PEFVQFAEENTRPAFETIQSIVQSFSSISMMFESTYHALYSSFRAILGVIEQFSKMKLKLSEILSSLALIRFLRKMYMRLFTNSASGHSDLGLDLEWGEAGCTSS--PSGPDKPRNWPVMLYLGLVLASPYFIWKMLKNQEKQTKPESSPPWSQGVGEHYLAKAQYAYIAQNSNDLTITKEEEIRIAPKGAQSTVRGWLLAANKSGQVGLVPANYVKVIG 293
[Close]
BLAST of SMED30013053 vs. TrEMBL
Match: A0A1Z5KWN0 (SH3 domain-containing protein (Fragment) OS=Ornithodoros moubata OX=6938 PE=4 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.227e-15
Identity = 56/205 (27.32%), Postives = 108/205 (52.68%), Query Frame = 2 
Query:  311 SFSSINNVVQTFNAFNTIINTAYSAMYTSIATIAGVTDQMNRSKSQLLHIIGSINXXXXXXXXXXXXXXXXSGNLPKLNDLTSFIVDIKNSFKSNSPSSANNILSCLFFITIICGPIVIYKFLKSITSSKSDPSLSWNSQVGKSYAAKVKENFVSRNSDELNVYQGEIVTIAPPEFQKEVNWYLVSNLKGE-QGIVPSSFVSVMG 922
            +F S+  +VQ F +   ++ ++Y A+ TS   + GV DQ +R +  L  II ++  ++ ++ ++     +L      L +   F      S +S S  SA  ++  +F   ++C P +++K + S TS+       W S     YAA    +FV+ ++ EL++  G+ + +AP E Q  V  +L++++ GE  G+VP+++V V+G
Sbjct:  126 AFQSVEALVQAFGSVAMMLESSYHALVTSFRAVVGVADQASRLRESLGRIISALALVRALRWLVRRTLAMLG-----LMNEAKFHDSSPGSVQSGSGPSAWPVV--IFLGFVVCAPWLLWKMVSSATSAAGQ----WASGQDDHYAAVATFDFVAASNAELSLQAGQELRLAPRELQPAVKGWLLASVDGETTGLVPANYVRVLG 319
[Close]
BLAST of SMED30013053 vs. Ensembl Cavefish
Match: pex13 (peroxisomal biogenesis factor 13 [Source:NCBI gene;Acc:103036737])

HSP 1 Score: 70.4774 bits (171), Expect = 3.473e-13
Identity = 50/223 (22.42%), Postives = 115/223 (51.57%), Query Frame = 2 
Query:  311 SFSSINNVVQTFNAFNTIINTAYSAMYTSIATIAGVTDQMNRSKSQLLHIIGSINXXXXXXXXXXXXXXXXSGNLPKLNDLTSFIVDIKNSFKSNSP----SSANNILSC---LFFITIICGPIVIYKFLKSITSSKSDPSLSWNSQVGKSYAAKVKENFVSRNSDELNVYQGEIVTIAPPEFQKEVNWYLVSNLKGEQ-GIVPSSFVSVMGVLXXXXXXETE 955
            +F SI ++V  F++ + +++  +SA+Y S   +  V +  +R +     ++ +   ++ ++ +   ++RIL G  P L     +  ++  +  +  P    S AN + S    LF   +  GP +I+K L+S   ++ D   +W +       A+ + +F + + +E+++  G+++ +AP E Q  V  +L++++ G+  G+VP+++V ++G     +  E E
Sbjct:  120 AFQSIESIVHAFSSVSMMLDATFSAVYNSFRAVLDVANHFSRLRVHFTKVLSAFALVRTLRYLYRRMQRIL-GLRPDLEAEDLWADNLVLAAGTRGPGLDDSKANTVKSWPIFLFLAVVFGGPYLIWKLLRSEEGTE-DSGTNWANGEDDHVVARAEYDFTAASEEEISIQTGDMLNLAPKEQQPRVRGWLMASVDGQTTGLVPANYVKILGKRRGRRQAELE 340
[Close]
BLAST of SMED30013053 vs. Ensembl Sea Lamprey
Match: pex13 (peroxisomal biogenesis factor 13 [Source:ZFIN;Acc:ZDB-GENE-040426-1544])

HSP 1 Score: 64.3142 bits (155), Expect = 3.205e-12
Identity = 53/219 (24.20%), Postives = 102/219 (46.58%), Query Frame = 2 
Query:  311 SFSSINNVVQTFNAFNTIINTAYSAMYTSIATIAGVTDQMNRSKSQL------LHIIGSINXXXXXXXXXXXXXXXXSGNLPKLNDLTSFIVDIKNSFKSNSPSSANN-------ILSCLFFITIICGPIVIYKFLKSITSSKSDPS-LSWNSQVGKSYAAKVKENFVSRNSDELNVYQGEIVTIAPPEFQKEVNWYLVSNLKG-EQGIVPSSFVSVMG 922
            +F S+ ++V  F++ + +++  +SA+Y S   +  VTD  +R + Q         ++ +I FL      LL L+     +   +    +       S +  S S A         IL  LFF  ++ GP +I+K L +        S   W S       A+   +F + + +E++ + G+++ +AP E Q  V  +L+++  G   G+VP+++V V+G
Sbjct:   40 AFQSVESIVHAFSSVSMMLDATFSAVYNSFRAVLDVTDHFSRLRMQFTNALSAFALVRTIRFLYGRLLALLGLRSKSEVDAAWVESCAA-----GASIEGASVSGAGRAGPKSWPIL--LFFAVVLGGPYLIWKLLSAAAQEPETVSGCEWASGEDDHIVARAGYDFTATSDEEISCHAGDVLILAPKEQQPRVRGWLLASRDGVATGLVPANYVQVLG 251
[Close]
BLAST of SMED30013053 vs. Ensembl Nematostella
Match: EDO41172 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S535])

HSP 1 Score: 72.4034 bits (176), Expect = 1.110e-14
Identity = 55/213 (25.82%), Postives = 104/213 (48.83%), Query Frame = 2 
Query:  311 SFSSINNVVQTFNAFNTIINTAYSAMYTSIATIAGVTDQMNRSKSQLLHIIGSINXXXXXXXXXXXXXXXXSGNLPKLNDLTSFI-----VDIKNSFKSNSPSSANNILSCLFFITIICG-PIVIYKFLKSITSSKSDPSLSWNSQVGKSYAAKVKENFVSRNSDELNVYQGEIVTIAPPEFQKEVNWYLVSNLKG-EQGIVPSSFVSVMGVL 928
            +F S+ ++VQ F +   ++ + + AM+ S   + G  D  +R K+ LL   G++   + +K +   L  +L   L K + L   +         ++        A+     + F  ++ G P +I+KFL+S+ SS+ D S  W +  G    AK + +F ++  DEL+   G ++ +AP   Q  +  +L++ + G + GIVP ++V V   L
Sbjct:   40 AFQSVESIVQAFGSIAMMLESTHFAMFNSFRAVIGAADHFSRLKNHLLSAFGAVAIFRTLKYLYQKLLYML--GLIKTSGLDEEVWTDAATSAASAAAEGDAKRASRSWPIIMFFAVVMGVPWLIWKFLQSV-SSEEDSSKDWMTGEGDHVLAKAEFDFNAQGEDELSFAAGTVLRLAPKGKQPRMRGWLLATVDGVKDGIVPGNYVKVWNTL 249
[Close]
BLAST of SMED30013053 vs. Ensembl Medaka
Match: pex13 (peroxisomal biogenesis factor 13 [Source:NCBI gene;Acc:101170295])

HSP 1 Score: 70.4774 bits (171), Expect = 3.826e-13
Identity = 58/222 (26.13%), Postives = 114/222 (51.35%), Query Frame = 2 
Query:  311 SFSSINNVVQTFNAFNTIINTAYSAMYTSIATIAGVTDQMNRSKSQLLHIIGS---INXXXXXXXXXXXXXXXXSGNLPKLNDLTSFIVDIKNSFKSNSPSSANNILSC---LFFITIICGPIVIYKFLKSITSSKSDPSLSWNSQVGKSYAAKVKENFVSRNSDELNVYQGEIVTIAPPEFQKEVNWYLVSNLKGEQ-GIVPSSFVSVMGVLXXXXXXETE 955
            +F SI ++VQ F + + +++  +SA+Y S   +  V + + R ++ L  ++ +   +  L+ + + LL L    S       D TS  V   +S    +     ++ S    LFF  ++ GP +I+K L S  SS  + S +W S       A+ + +F + + +E+ +  G+++ +AP E Q  V  +L++++ G+  G+VP+++V V+G     K+ E E
Sbjct:  129 AFQSIESIVQAFASVSMMLDATFSAVYNSFRAVLDVANHLTRLRAHLTRVLSAFALVRTLRYLYQRLLRLLGRRSDVEDLWADSTSDAVVAGSSRGYEAGMDEQSVKSWPIFLFFAVVLGGPYLIWKLLSSSPSSDEN-STNWASGEDDHVVARAEYDFSAASEEEIPLRAGDMLNLAPKEQQPRVRGWLLASVDGQTIGLVPANYVKVLGKRRGRKHAEME 349
[Close]
BLAST of SMED30013053 vs. Planmine SMEST
Match: SMESG000078177.1 (SMESG000078177.1)

HSP 1 Score: 557.755 bits (1436), Expect = 0.000e+0
Identity = 301/302 (99.67%), Postives = 302/302 (100.00%), Query Frame = 2 
Query:   50 MENHNNCCDVDNCEASLRPGVGTSQNLVIPPRINRYTQPNAAYNYNSFPNLSNSYSNYYGIGGMNSNFHNPMYGNTINPKMDNFITDSFSSINNVVQTFNAFNTIINTAYSAMYTSIATIAGVTDQMNRSKSQLLHIIGSINXXXXXXXXXXXXXXXXSGNLPKLNDLTSFIVDIKNSFKSNSPSSANNILSCLFFITIICGPIVIYKFLKSITSSKSDPSLSWNSQVGKSYAAKVKENFVSRNSDELNVYQGEIVTIAPPEFQKEVNWYLVSNLKGEQGIVPSSFVSVMGVLXXXXXXETE 955
            MENHNNCCDVDNCEASLRPGVGTSQNLVIPPRINRYTQPNAAYNYNSFPNLSNSYSNYYGIGGMNSNFHNPMYGNTINPKMDNFITDSFSSINNVVQTFNAFNTIINTAYSAMYTSIATIAGVTDQMNRSKSQLLHIIGSINFLKIIKKILLFLKRILSGNLPKLNDLTSFIVDIKNSF+SNSPSSANNILSCLFFITIICGPIVIYKFLKSITSSKSDPSLSWNSQVGKSYAAKVKENFVSRNSDELNVYQGEIVTIAPPEFQKEVNWYLVSNLKGEQGIVPSSFVSVMGVLNKNKNKETE
Sbjct:    1 MENHNNCCDVDNCEASLRPGVGTSQNLVIPPRINRYTQPNAAYNYNSFPNLSNSYSNYYGIGGMNSNFHNPMYGNTINPKMDNFITDSFSSINNVVQTFNAFNTIINTAYSAMYTSIATIAGVTDQMNRSKSQLLHIIGSINFLKIIKKILLFLKRILSGNLPKLNDLTSFIVDIKNSFQSNSPSSANNILSCLFFITIICGPIVIYKFLKSITSSKSDPSLSWNSQVGKSYAAKVKENFVSRNSDELNVYQGEIVTIAPPEFQKEVNWYLVSNLKGEQGIVPSSFVSVMGVLNKNKNKETE 302
The following BLAST results are available for this feature:
BLAST of SMED30013053 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 1
Match NameE-valueIdentityDescription
PEX133.643e-1221.81peroxisomal biogenesis factor 13 [Source:HGNC Symb... [more]
back to top
BLAST of SMED30013053 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30013053 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30013053 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 1
Match NameE-valueIdentityDescription
pex139.822e-1323.14peroxisomal biogenesis factor 13 [Source:ZFIN;Acc:... [more]
back to top
BLAST of SMED30013053 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 1
Match NameE-valueIdentityDescription
itgbl11.192e-1123.76integrin subunit beta like 1 [Source:Xenbase;Acc:X... [more]
back to top
BLAST of SMED30013053 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 1
Match NameE-valueIdentityDescription
Pex131.117e-1122.15peroxisomal biogenesis factor 13 [Source:MGI Symbo... [more]
back to top
BLAST of SMED30013053 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 3
Match NameE-valueIdentityDescription
sp|Q0P5B1|PEX13_BOVIN8.716e-1220.26Peroxisomal membrane protein PEX13 OS=Bos taurus O... [more]
sp|Q92968|PEX13_HUMAN1.750e-1121.81Peroxisomal membrane protein PEX13 OS=Homo sapiens... [more]
sp|Q9D0K1|PEX13_MOUSE7.813e-1122.15Peroxisomal membrane protein PEX13 OS=Mus musculus... [more]
back to top
BLAST of SMED30013053 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
T2M8C41.321e-1827.80Peroxisomal membrane protein PEX13 (Fragment) OS=H... [more]
A0A3M7S6H72.644e-1728.67Peroxisome biogenesis factor 13 OS=Brachionus plic... [more]
A0A2R5L9J52.907e-1627.80Putative peroxisomal bioproteinsis protein peroxin... [more]
A0A553NFE15.679e-1627.64SH3 domain-containing protein OS=Tigriopus califor... [more]
A0A1Z5KWN02.227e-1527.32SH3 domain-containing protein (Fragment) OS=Ornith... [more]
back to top
BLAST of SMED30013053 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 1
Match NameE-valueIdentityDescription
pex133.473e-1322.42peroxisomal biogenesis factor 13 [Source:NCBI gene... [more]
back to top
BLAST of SMED30013053 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 1
Match NameE-valueIdentityDescription
pex133.205e-1224.20peroxisomal biogenesis factor 13 [Source:ZFIN;Acc:... [more]
back to top
BLAST of SMED30013053 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30013053 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 1
Match NameE-valueIdentityDescription
EDO411721.110e-1425.82Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
back to top
BLAST of SMED30013053 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 1
Match NameE-valueIdentityDescription
pex133.826e-1326.13peroxisomal biogenesis factor 13 [Source:NCBI gene... [more]
back to top
BLAST of SMED30013053 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 1
Match NameE-valueIdentityDescription
SMESG000078177.10.000e+099.67SMESG000078177.1[more]
back to top
Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30013053 ID=SMED30013053|Name=SMED30013053|organism=Schmidtea mediterranea sexual|type=transcript|length=1004bp
GTTTCAACCAGCACTTTTCTAACTTTGATTGATACTTTTTTTTTAAAATA
TGGAAAATCATAATAATTGTTGCGATGTTGATAATTGTGAGGCGAGTCTT
AGACCCGGAGTTGGAACGTCTCAAAATTTAGTGATTCCACCAAGAATTAA
TAGATATACACAGCCTAATGCTGCATATAATTATAATTCTTTTCCTAATC
TTTCAAATAGTTATTCAAATTATTATGGAATTGGAGGTATGAATTCTAAT
TTCCATAATCCCATGTACGGTAACACTATAAATCCTAAAATGGATAATTT
TATTACGGATTCATTTTCATCTATTAATAATGTCGTGCAAACCTTTAATG
CGTTCAACACAATTATTAATACAGCTTATAGTGCTATGTATACATCGATA
GCTACAATCGCTGGAGTTACAGACCAAATGAATAGGTCAAAATCACAGTT
GCTTCATATTATTGGTTCAATAAATTTTCTGAAAATTATTAAAAAAATTT
TACTATTTTTAAAAAGAATATTATCTGGAAATCTGCCAAAACTCAACGAT
TTGACATCGTTTATTGTTGATATTAAAAATAGTTTTAAAAGCAATTCTCC
CAGTTCTGCAAATAATATTTTATCGTGTCTGTTTTTTATAACAATTATTT
GTGGACCAATAGTGATATATAAATTTCTGAAATCTATTACATCATCAAAA
TCAGATCCTAGTTTGTCGTGGAATTCCCAAGTCGGCAAATCATACGCTGC
AAAGGTAAAAGAGAATTTCGTTTCCAGAAATTCAGATGAATTGAATGTTT
ATCAAGGTGAAATCGTAACGATAGCTCCACCAGAATTTCAAAAAGAAGTT
AATTGGTATCTTGTTAGCAATTTGAAAGGCGAACAAGGTATTGTACCGTC
GTCCTTTGTCAGCGTCATGGGAGTTCTAAATAAAAATAAAAATAAAGAAA
CTGAATAAAATGTTGTTTTTATTTTTGAATAAAGATTTGTCGAATTAAAA
AAAA
back to top

protein sequence of SMED30013053-orf-1

>SMED30013053-orf-1 ID=SMED30013053-orf-1|Name=SMED30013053-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=303bp
MENHNNCCDVDNCEASLRPGVGTSQNLVIPPRINRYTQPNAAYNYNSFPN
LSNSYSNYYGIGGMNSNFHNPMYGNTINPKMDNFITDSFSSINNVVQTFN
AFNTIINTAYSAMYTSIATIAGVTDQMNRSKSQLLHIIGSINFLKIIKKI
LLFLKRILSGNLPKLNDLTSFIVDIKNSFKSNSPSSANNILSCLFFITII
CGPIVIYKFLKSITSSKSDPSLSWNSQVGKSYAAKVKENFVSRNSDELNV
YQGEIVTIAPPEFQKEVNWYLVSNLKGEQGIVPSSFVSVMGVLNKNKNKE
TE*
back to top
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000026gut
PLANA:0000070intestinal phagocyte
PLANA:0002075pigment cell
Vocabulary: INTERPRO
TermDefinition
IPR035463Pex13
IPR036028SH3-like_dom_sf
IPR001452SH3_domain
IPR007223Peroxin-13_N
Vocabulary: molecular function
TermDefinition
GO:0005515protein binding
Vocabulary: cellular component
TermDefinition
GO:0016021integral component of membrane
GO:0005777peroxisome
Vocabulary: biological process
TermDefinition
GO:0016560protein import into peroxisome matrix, docking
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001452SH3 domainSMARTSM00326SH3_2coord: 232..291
e-value: 1.1E-7
score: 41.6
IPR001452SH3 domainPFAMPF07653SH3_2coord: 234..289
e-value: 8.9E-7
score: 28.5
IPR001452SH3 domainPROSITEPS50002SH3coord: 229..292
score: 18.614
IPR007223Peroxin 13, N-terminalPFAMPF04088Peroxin-13_Ncoord: 87..210
e-value: 2.1E-15
score: 57.3
NoneNo IPR availableGENE3DG3DSA:2.30.30.40coord: 225..299
e-value: 7.0E-11
score: 43.5
NoneNo IPR availablePANTHERPTHR19332:SF1PEROXISOMAL MEMBRANE PROTEIN PEX13coord: 37..291
NoneNo IPR availableTMHMMTMhelixcoord: 185..207
IPR035463Peroxin 13PANTHERPTHR19332PEROXISOMAL MEMBRANE PROTEIN PEX13coord: 37..291
IPR036028SH3-like domain superfamilySUPERFAMILYSSF50044SH3-domaincoord: 221..295