SMED30012966

Overview
NameSMED30012966
Smed IDSMED30012966
Length (bp)1127
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30012966 (SMED30012966) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30012966 (SMED30012966) in cells (dots) of each of the 12 neoblast clusters.

 

back to top


 

Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

back to top
Anatomical Expression

PAGE et. al., 2020




SMED30012966

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 20

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
pharynxSMED30012966SMESG000079607.1 SMESG000072955.1 SMESG000049847.1 SMESG000049844.1 SMESG000049832.1 SMESG000049812.1 SMESG000049806.1 SMESG000049805.1 SMESG000049772.1 SMESG000049767.1 SMESG000049756.1 SMESG000049745.1 SMESG000049740.1 SMESG000049739.1 SMESG000049695.1 SMESG000049688.1 SMESG000049683.1 SMESG000049676.1 SMESG000049665.1 SMESG000049663.1 SMESG000049647.1 SMESG000049621.1 SMESG000049614.1 SMESG000049601.1 SMESG000049567.1 SMESG000049548.1 SMESG000040301.1 SMESG000040257.1 SMESG000032755.1 SMESG000032715.1 SMESG000022696.1 SMESG000022691.1 SMESG000022676.1 SMESG000022665.1 SMESG000022640.1 SMESG000022619.1 SMESG000022612.1 dd_Smed_v4_490_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
protonephridiaSMED30012966SMESG000079607.1 SMESG000072955.1 SMESG000049847.1 SMESG000049844.1 SMESG000049832.1 SMESG000049812.1 SMESG000049806.1 SMESG000049805.1 SMESG000049772.1 SMESG000049767.1 SMESG000049756.1 SMESG000049745.1 SMESG000049740.1 SMESG000049739.1 SMESG000049695.1 SMESG000049688.1 SMESG000049683.1 SMESG000049676.1 SMESG000049665.1 SMESG000049663.1 SMESG000049647.1 SMESG000049621.1 SMESG000049614.1 SMESG000049601.1 SMESG000049567.1 SMESG000049548.1 SMESG000040301.1 SMESG000040257.1 SMESG000032755.1 SMESG000032715.1 SMESG000022696.1 SMESG000022691.1 SMESG000022676.1 SMESG000022665.1 SMESG000022640.1 SMESG000022619.1 SMESG000022612.1 dd_Smed_v4_490_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30012966SMESG000079607.1 SMESG000072955.1 SMESG000049847.1 SMESG000049844.1 SMESG000049832.1 SMESG000049812.1 SMESG000049806.1 SMESG000049805.1 SMESG000049772.1 SMESG000049767.1 SMESG000049756.1 SMESG000049745.1 SMESG000049740.1 SMESG000049739.1 SMESG000049695.1 SMESG000049688.1 SMESG000049683.1 SMESG000049676.1 SMESG000049665.1 SMESG000049663.1 SMESG000049647.1 SMESG000049621.1 SMESG000049614.1 SMESG000049601.1 SMESG000049567.1 SMESG000049548.1 SMESG000040301.1 SMESG000040257.1 SMESG000032755.1 SMESG000032715.1 SMESG000022696.1 SMESG000022691.1 SMESG000022676.1 SMESG000022665.1 SMESG000022640.1 SMESG000022619.1 SMESG000022612.1 dd_Smed_v4_490_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
gutSMED30012966SMESG000079607.1 SMESG000072955.1 SMESG000049847.1 SMESG000049844.1 SMESG000049832.1 SMESG000049812.1 SMESG000049806.1 SMESG000049805.1 SMESG000049772.1 SMESG000049767.1 SMESG000049756.1 SMESG000049745.1 SMESG000049740.1 SMESG000049739.1 SMESG000049695.1 SMESG000049688.1 SMESG000049683.1 SMESG000049676.1 SMESG000049665.1 SMESG000049663.1 SMESG000049647.1 SMESG000049621.1 SMESG000049614.1 SMESG000049601.1 SMESG000049567.1 SMESG000049548.1 SMESG000040301.1 SMESG000040257.1 SMESG000032755.1 SMESG000032715.1 SMESG000022696.1 SMESG000022691.1 SMESG000022676.1 SMESG000022665.1 SMESG000022640.1 SMESG000022619.1 SMESG000022612.1 dd_Smed_v4_490_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30012966SMESG000079607.1 SMESG000072955.1 SMESG000049847.1 SMESG000049844.1 SMESG000049832.1 SMESG000049812.1 SMESG000049806.1 SMESG000049805.1 SMESG000049772.1 SMESG000049767.1 SMESG000049756.1 SMESG000049745.1 SMESG000049740.1 SMESG000049739.1 SMESG000049695.1 SMESG000049688.1 SMESG000049683.1 SMESG000049676.1 SMESG000049665.1 SMESG000049663.1 SMESG000049647.1 SMESG000049621.1 SMESG000049614.1 SMESG000049601.1 SMESG000049567.1 SMESG000049548.1 SMESG000040301.1 SMESG000040257.1 SMESG000032755.1 SMESG000032715.1 SMESG000022696.1 SMESG000022691.1 SMESG000022676.1 SMESG000022665.1 SMESG000022640.1 SMESG000022619.1 SMESG000022612.1 dd_Smed_v4_490_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30012966SMESG000079607.1 SMESG000072955.1 SMESG000049847.1 SMESG000049844.1 SMESG000049832.1 SMESG000049812.1 SMESG000049806.1 SMESG000049805.1 SMESG000049772.1 SMESG000049767.1 SMESG000049756.1 SMESG000049745.1 SMESG000049740.1 SMESG000049739.1 SMESG000049695.1 SMESG000049688.1 SMESG000049683.1 SMESG000049676.1 SMESG000049665.1 SMESG000049663.1 SMESG000049647.1 SMESG000049621.1 SMESG000049614.1 SMESG000049601.1 SMESG000049567.1 SMESG000049548.1 SMESG000040301.1 SMESG000040257.1 SMESG000032755.1 SMESG000032715.1 SMESG000022696.1 SMESG000022691.1 SMESG000022676.1 SMESG000022665.1 SMESG000022640.1 SMESG000022619.1 SMESG000022612.1 dd_Smed_v4_490_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
muscle cellSMED30012966SMESG000079607.1 SMESG000072955.1 SMESG000049847.1 SMESG000049844.1 SMESG000049832.1 SMESG000049812.1 SMESG000049806.1 SMESG000049805.1 SMESG000049772.1 SMESG000049767.1 SMESG000049756.1 SMESG000049745.1 SMESG000049740.1 SMESG000049739.1 SMESG000049695.1 SMESG000049688.1 SMESG000049683.1 SMESG000049676.1 SMESG000049665.1 SMESG000049663.1 SMESG000049647.1 SMESG000049621.1 SMESG000049614.1 SMESG000049601.1 SMESG000049567.1 SMESG000049548.1 SMESG000040301.1 SMESG000040257.1 SMESG000032755.1 SMESG000032715.1 SMESG000022696.1 SMESG000022691.1 SMESG000022676.1 SMESG000022665.1 SMESG000022640.1 SMESG000022619.1 SMESG000022612.1 dd_Smed_v4_490_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30012966SMESG000079607.1 SMESG000072955.1 SMESG000049847.1 SMESG000049844.1 SMESG000049832.1 SMESG000049812.1 SMESG000049806.1 SMESG000049805.1 SMESG000049772.1 SMESG000049767.1 SMESG000049756.1 SMESG000049745.1 SMESG000049740.1 SMESG000049739.1 SMESG000049695.1 SMESG000049688.1 SMESG000049683.1 SMESG000049676.1 SMESG000049665.1 SMESG000049663.1 SMESG000049647.1 SMESG000049621.1 SMESG000049614.1 SMESG000049601.1 SMESG000049567.1 SMESG000049548.1 SMESG000040301.1 SMESG000040257.1 SMESG000032755.1 SMESG000032715.1 SMESG000022696.1 SMESG000022691.1 SMESG000022676.1 SMESG000022665.1 SMESG000022640.1 SMESG000022619.1 SMESG000022612.1 dd_Smed_v4_490_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymaSMED30012966SMESG000079607.1 SMESG000072955.1 SMESG000049847.1 SMESG000049844.1 SMESG000049832.1 SMESG000049812.1 SMESG000049806.1 SMESG000049805.1 SMESG000049772.1 SMESG000049767.1 SMESG000049756.1 SMESG000049745.1 SMESG000049740.1 SMESG000049739.1 SMESG000049695.1 SMESG000049688.1 SMESG000049683.1 SMESG000049676.1 SMESG000049665.1 SMESG000049663.1 SMESG000049647.1 SMESG000049621.1 SMESG000049614.1 SMESG000049601.1 SMESG000049567.1 SMESG000049548.1 SMESG000040301.1 SMESG000040257.1 SMESG000032755.1 SMESG000032715.1 SMESG000022696.1 SMESG000022691.1 SMESG000022676.1 SMESG000022665.1 SMESG000022640.1 SMESG000022619.1 SMESG000022612.1 dd_Smed_v4_490_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30012966SMESG000079607.1 SMESG000072955.1 SMESG000049847.1 SMESG000049844.1 SMESG000049832.1 SMESG000049812.1 SMESG000049806.1 SMESG000049805.1 SMESG000049772.1 SMESG000049767.1 SMESG000049756.1 SMESG000049745.1 SMESG000049740.1 SMESG000049739.1 SMESG000049695.1 SMESG000049688.1 SMESG000049683.1 SMESG000049676.1 SMESG000049665.1 SMESG000049663.1 SMESG000049647.1 SMESG000049621.1 SMESG000049614.1 SMESG000049601.1 SMESG000049567.1 SMESG000049548.1 SMESG000040301.1 SMESG000040257.1 SMESG000032755.1 SMESG000032715.1 SMESG000022696.1 SMESG000022691.1 SMESG000022676.1 SMESG000022665.1 SMESG000022640.1 SMESG000022619.1 SMESG000022612.1 dd_Smed_v4_490_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cilated neuronSMED30012966SMESG000079607.1 SMESG000072955.1 SMESG000049847.1 SMESG000049844.1 SMESG000049832.1 SMESG000049812.1 SMESG000049806.1 SMESG000049805.1 SMESG000049772.1 SMESG000049767.1 SMESG000049756.1 SMESG000049745.1 SMESG000049740.1 SMESG000049739.1 SMESG000049695.1 SMESG000049688.1 SMESG000049683.1 SMESG000049676.1 SMESG000049665.1 SMESG000049663.1 SMESG000049647.1 SMESG000049621.1 SMESG000049614.1 SMESG000049601.1 SMESG000049567.1 SMESG000049548.1 SMESG000040301.1 SMESG000040257.1 SMESG000032755.1 SMESG000032715.1 SMESG000022696.1 SMESG000022691.1 SMESG000022676.1 SMESG000022665.1 SMESG000022640.1 SMESG000022619.1 SMESG000022612.1 dd_Smed_v4_490_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
non-ciliated neuronSMED30012966SMESG000079607.1 SMESG000072955.1 SMESG000049847.1 SMESG000049844.1 SMESG000049832.1 SMESG000049812.1 SMESG000049806.1 SMESG000049805.1 SMESG000049772.1 SMESG000049767.1 SMESG000049756.1 SMESG000049745.1 SMESG000049740.1 SMESG000049739.1 SMESG000049695.1 SMESG000049688.1 SMESG000049683.1 SMESG000049676.1 SMESG000049665.1 SMESG000049663.1 SMESG000049647.1 SMESG000049621.1 SMESG000049614.1 SMESG000049601.1 SMESG000049567.1 SMESG000049548.1 SMESG000040301.1 SMESG000040257.1 SMESG000032755.1 SMESG000032715.1 SMESG000022696.1 SMESG000022691.1 SMESG000022676.1 SMESG000022665.1 SMESG000022640.1 SMESG000022619.1 SMESG000022612.1 dd_Smed_v4_490_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
gutSMED30012966SMESG000052698.1 SMESG000027142.1 SMESG000059994.1 dd_Smed_v4_1029_1_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30012966SMESG000052698.1 SMESG000027142.1 SMESG000059994.1 dd_Smed_v4_1029_1_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30012966SMESG000079607.1 SMESG000049844.1 SMESG000049812.1 SMESG000049772.1 SMESG000049745.1 SMESG000049740.1 SMESG000049695.1 SMESG000049688.1 SMESG000049683.1 SMESG000049676.1 SMESG000049663.1 SMESG000049647.1 SMESG000049621.1 SMESG000049614.1 SMESG000049567.1 SMESG000040301.1 SMESG000032755.1 SMESG000032715.1 SMESG000022696.1 SMESG000022691.1 SMESG000022665.1 SMESG000022640.1 SMESG000022619.1 Contig53543newmark_estsPMID:29674431
Fincher et al., 2018
FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
pharynxSMED30012966SMESG000079607.1 SMESG000049847.1 SMESG000049832.1 SMESG000049756.1 SMESG000040301.1 SMESG000022640.1 SMESG000072592.1 SMESG000049745.1 SMESG000049740.1 SMESG000049695.1 SMESG000049683.1 SMESG000049676.1 SMESG000049665.1 SMESG000049663.1 SMESG000049601.1 SMESG000049567.1 SMESG000040257.1 SMESG000022691.1 SMESG000022676.1 SMESG000049548.1 SMESG000049895.1 SMESG000049844.1 SMESG000049812.1 SMESG000022696.1 SMESG000022690.1 SMESG000022619.1 SMESG000072955.1 SMESG000049806.1 SMESG000049805.1 SMESG000032755.1 SMESG000032715.1 SMESG000022665.1 SMESG000000563.1 SMESG000000371.1 SMESG000049772.1 SMESG000049767.1 SMESG000049739.1 SMESG000049688.1 SMESG000049647.1 SMESG000049621.1 SMESG000049614.1 SMESG000022612.1 SMESG000029699.1 SMESG000000559.1 SMESG000000302.1 SMESG000049565.1 SMESG000065603.1 SMESG000000411.1 SMESG000000372.1 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30012966SMESG000079607.1 SMESG000049847.1 SMESG000049832.1 SMESG000049756.1 SMESG000040301.1 SMESG000022640.1 SMESG000072592.1 SMESG000049745.1 SMESG000049740.1 SMESG000049695.1 SMESG000049683.1 SMESG000049676.1 SMESG000049665.1 SMESG000049663.1 SMESG000049601.1 SMESG000049567.1 SMESG000040257.1 SMESG000022691.1 SMESG000022676.1 SMESG000049548.1 SMESG000049895.1 SMESG000049844.1 SMESG000049812.1 SMESG000022696.1 SMESG000022690.1 SMESG000022619.1 SMESG000072955.1 SMESG000049806.1 SMESG000049805.1 SMESG000032755.1 SMESG000032715.1 SMESG000022665.1 SMESG000000563.1 SMESG000000371.1 SMESG000049772.1 SMESG000049767.1 SMESG000049739.1 SMESG000049688.1 SMESG000049647.1 SMESG000049621.1 SMESG000049614.1 SMESG000022612.1 SMESG000029699.1 SMESG000000559.1 SMESG000000302.1 SMESG000049565.1 SMESG000065603.1 SMESG000000411.1 SMESG000000372.1 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
intestinal phagocyteSMED30012966SMESG000079607.1 SMESG000049847.1 SMESG000049832.1 SMESG000049756.1 SMESG000040301.1 SMESG000022640.1 SMESG000072592.1 SMESG000049745.1 SMESG000049740.1 SMESG000049695.1 SMESG000049683.1 SMESG000049676.1 SMESG000049665.1 SMESG000049663.1 SMESG000049601.1 SMESG000049567.1 SMESG000040257.1 SMESG000022691.1 SMESG000022676.1 SMESG000049548.1 SMESG000049895.1 SMESG000049844.1 SMESG000049812.1 SMESG000022696.1 SMESG000022690.1 SMESG000022619.1 SMESG000072955.1 SMESG000049806.1 SMESG000049805.1 SMESG000032755.1 SMESG000032715.1 SMESG000022665.1 SMESG000000563.1 SMESG000000371.1 SMESG000049772.1 SMESG000049767.1 SMESG000049739.1 SMESG000049688.1 SMESG000049647.1 SMESG000049621.1 SMESG000049614.1 SMESG000022612.1 SMESG000029699.1 SMESG000000559.1 SMESG000000302.1 SMESG000049565.1 SMESG000065603.1 SMESG000000411.1 SMESG000000372.1 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30012966SMESG000079607.1 SMESG000049847.1 SMESG000049832.1 SMESG000049756.1 SMESG000040301.1 SMESG000022640.1 SMESG000072592.1 SMESG000049745.1 SMESG000049740.1 SMESG000049695.1 SMESG000049683.1 SMESG000049676.1 SMESG000049665.1 SMESG000049663.1 SMESG000049601.1 SMESG000049567.1 SMESG000040257.1 SMESG000022691.1 SMESG000022676.1 SMESG000049548.1 SMESG000049895.1 SMESG000049844.1 SMESG000049812.1 SMESG000022696.1 SMESG000022690.1 SMESG000022619.1 SMESG000072955.1 SMESG000049806.1 SMESG000049805.1 SMESG000032755.1 SMESG000032715.1 SMESG000022665.1 SMESG000000563.1 SMESG000000371.1 SMESG000049772.1 SMESG000049767.1 SMESG000049739.1 SMESG000049688.1 SMESG000049647.1 SMESG000049621.1 SMESG000049614.1 SMESG000022612.1 SMESG000029699.1 SMESG000000559.1 SMESG000000302.1 SMESG000049565.1 SMESG000065603.1 SMESG000000411.1 SMESG000000372.1 dd_Smed_v6_490_0dd_Smed_v6PMID:29674432
Plass et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30012966SMESG000079607.1 SMESG000072955.1 SMESG000049847.1 SMESG000049844.1 SMESG000049832.1 SMESG000049812.1 SMESG000049806.1 SMESG000049805.1 SMESG000049772.1 SMESG000049767.1 SMESG000049756.1 SMESG000049745.1 SMESG000049740.1 SMESG000049739.1 SMESG000049695.1 SMESG000049688.1 SMESG000049683.1 SMESG000049676.1 SMESG000049665.1 SMESG000049663.1 SMESG000049647.1 SMESG000049621.1 SMESG000049614.1 SMESG000049601.1 SMESG000049567.1 SMESG000049548.1 SMESG000040301.1 SMESG000040257.1 SMESG000032755.1 SMESG000032715.1 SMESG000022696.1 SMESG000022691.1 SMESG000022676.1 SMESG000022665.1 SMESG000022640.1 SMESG000022619.1 SMESG000022612.1 dd_Smed_v4_490_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017
whole organism asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
BLAST of SMED30012966 vs. TrEMBL
Match: A0A1I7XTN1 (Uncharacterized protein OS=Heterorhabditis bacteriophora OX=37862 PE=4 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 1.131e-11
Identity = 35/65 (53.85%), Postives = 42/65 (64.62%), Query Frame = -3
Query:  418 HTYRTLPIDTNGFLPLSNASFNTETGLRSWLVEFFESRPSNIYHPGIENLVER*DEIVNNKEAYI 612
            H +R+L  D  G       SFNT+  LR+WL EFFES+P + Y   IENLVER +EIVNNK  YI
Sbjct:  165 HLFRSLSNDMRG------VSFNTDAELRAWLDEFFESKPGDFYQRSIENLVERWEEIVNNKGEYI 223          

HSP 2 Score: 32.7278 bits (73), Expect = 1.131e-11
Identity = 13/21 (61.90%), Postives = 14/21 (66.67%), Query Frame = -2
Query:  596 NMTKEVFQGHCWEILAHLSYS 658
            NMTKE  Q H WE+L H  YS
Sbjct:  136 NMTKEAIQTHGWEVLPHPPYS 156          
BLAST of SMED30012966 vs. TrEMBL
Match: A0A443Q5Q8 (Uncharacterized protein OS=Dinothrombium tinctorium OX=1965070 GN=B4U79_02211 PE=4 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 1.259e-9
Identity = 29/50 (58.00%), Postives = 37/50 (74.00%), Query Frame = -3
Query:  418 LSNASFNTETGLRSWLVEFFESRPSNIYHPGIENLVER*DEIVNNKEAYI 567
            +   SFNT+  LR+WL EFFES+P + Y  GI+NLV+R  E+VNNKE YI
Sbjct:    1 MRGVSFNTDAELRAWLDEFFESKPGDFYQRGIKNLVKRWKEVVNNKEEYI 50          
BLAST of SMED30012966 vs. TrEMBL
Match: A0A1I7XA86 (Uncharacterized protein OS=Heterorhabditis bacteriophora OX=37862 PE=4 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 5.137e-9
Identity = 31/65 (47.69%), Postives = 39/65 (60.00%), Query Frame = -3
Query:  418 HTYRTLPIDTNGFLPLSNASFNTETGLRSWLVEFFESRPSNIYHPGIENLVER*DEIVNNKEAYI 612
            H +R+L  D  G       SFNT+  LR+WL EFFES+  N     IENLV R +E+VN+K  YI
Sbjct:   61 HLFRSLSNDMRG------VSFNTDVELRAWLDEFFESKQGNFCQRSIENLVARWEELVNSKGEYI 119          

HSP 2 Score: 33.4982 bits (75), Expect = 5.137e-9
Identity = 14/21 (66.67%), Postives = 15/21 (71.43%), Query Frame = -2
Query:  596 NMTKEVFQGHCWEILAHLSYS 658
            NMTKEV Q H WE+L H  YS
Sbjct:   32 NMTKEVIQTHGWEVLPHPPYS 52          
The following BLAST results are available for this feature:
BLAST of SMED30012966 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30012966 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30012966 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30012966 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30012966 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30012966 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30012966 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30012966 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 3
Match NameE-valueIdentityDescription
A0A1I7XTN11.131e-1153.85Uncharacterized protein OS=Heterorhabditis bacteri... [more]
A0A443Q5Q81.259e-958.00Uncharacterized protein OS=Dinothrombium tinctoriu... [more]
A0A1I7XA865.137e-947.69Uncharacterized protein OS=Heterorhabditis bacteri... [more]
back to top
BLAST of SMED30012966 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30012966 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30012966 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30012966 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30012966 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30012966 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30012966 ID=SMED30012966|Name=SMED30012966|organism=Schmidtea mediterranea sexual|type=transcript|length=1127bp
CCAGAATTTTCCTGCTCTCTCGATTCCATCTCGCCCATTTTCTGCTGCAA
TCACAAATACCAAATCAATATATCATATCCAATATTGGCGGCCCAGAATT
ATGAATGTGCTCCCGCGGGTGAGTCAATGTGAGGCACTGTAGCCAGGGAT
ATTTTATGCTTATTTAATGTTTATCATATACAATATTCCCCCACTAAAAT
CACCTCAAATAATTTGTTGCTTATAAAAACAATCGAGTTACGCTCAATTC
TTAAATAATCTTATTTAAATTTGTTTCCCTAAAATTAATAAGGTGCTTTC
AGCAGAGAATTGAATATTTCGGATAATTTGTCAGAGTGATTTAAAATGAA
GTTACAAGCCGACCAATAAATGTTGGCTGAACAGGATATGATAATTAAAG
TATTAAGCTGATTAATCAATGTATGCTTCCTTATTATTTACAATTTCATC
TCAACGTTCAACAAGATTTTCAATACCTGGGTGGTAAATATTACTAGGTC
TCGACTCGAAAAATTCAACCAACCAAGATCTCAACCCTGTCTCGGTATTG
AACGAAGCATTTGAAAGAGGTAGAAATCCGTTGGTGTCAATCGGGAGAGT
ACGATAGGTGTGCTAGTATTTCCCAGCAATGGCCTTGAAAGACTTCCTTG
GTCATATTGTCGAAAAATGAAATTCTTATTTTTACCAATTTGATATTAAA
TTTTAATGATCTGAAAATTTATTCGAACAAAAAAACGAAACATAGATTAC
GGTAGAACAAATCATCCTCTTTCGAACGACTTAAAACATTATACCAAAAA
TATTTAATCACAGGCACAATGTTAAAAATTACAAAACTGTGGGAACTTAG
TCGCTAACCTAATAATTCACGTAAAATAATCTTCGGTGGGTCATGAGTTG
ATAAATAAGATTAAATGAAATTTTAATTTAAAATGCATTTTAATAAAAGC
GCGTCATTTTTCTAAATATGTTGTTGCAATATATTTCAAAAACTTTAGCT
GTCATCATCAACACTAAAAACTTCAATAAAAATGATTATATTTATAGGTT
TATTAGTAATTATAAAATTGCATTTTAAAACTATAAATTTTAAAATATCA
AACTATTTAAAAGTAAAAACAAGTAAC
back to top
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000016pharynx
PLANA:0000026gut
PLANA:0000034epidermis
PLANA:0000070intestinal phagocyte
PLANA:0002032epidermal cell
PLANA:0003116parenchymal cell