Nuclear receptor 2DBD gamma

Overview


Name	Nuclear receptor 2DBD gamma
Smed ID	SMED30012861
Length (bp)	2209

Neoblast Clusters

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.

Expression of Nuclear receptor 2DBD gamma (SMED30012861) t-SNE clustered cells

Violin plots show distribution of expression levels for Nuclear receptor 2DBD gamma (SMED30012861) in cells (dots) of each of the 12 neoblast clusters.

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30012861

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 2

Expressed In	Reference Transcript	Gene Models	Published Transcript	Transcriptome	Publication	Specimen	Lifecycle	Evidence
penis papilla	SMED30012861	SMESG000008787.1	SMED30012861	smed_20140614	PMID:25278423 Tharp et al., 2014
gut	SMED30012861	SMESG000008787.1	dd_Smed_v4_79822_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018

Note: Hover over icons to view figure legend

Homology

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BLAST of Nuclear receptor 2DBD gamma vs. Ensembl Human
Match: RORA (RAR related orphan receptor A [Source:HGNC Symbol;Acc:HGNC:10258])

HSP 1 Score: 96.2857 bits (238), Expect = 1.243e-22
Identity = 41/82 (50.00%), Postives = 54/82 (65.85%), Query Frame = 3

Query:  789 ISKIPCRVCGGKSSGFHFGALTCEGCKGFFRRTESTKQHLACITGNNNCCLTGSSSRNLCKSCRFNRCLGVGMSKKGSRIGR 1034
            I  IPC++CG KSSG H+G +TCEGCKGFFRR++ +    +C    N  CL   +SRN C+ CR  +CL VGMS+   + GR
Sbjct:   70 IEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKN--CLIDRTSRNRCQHCRLQKCLAVGMSRDAVKFGR 149

HSP 2 Score: 65.4698 bits (158), Expect = 7.322e-12
Identity = 25/69 (36.23%), Postives = 42/69 (60.87%), Query Frame = 3

Query:  546 CQVCRESAAGFHHGAYVCEACKKFFMRHNLNSTKFTIPCPTGGQCAQLKTGRIKCQSCRFKKCVSIGMA 752
            C++C + ++G H+G   CE CK FF R   ++  ++  CP    C   +T R +CQ CR +KC+++GM+
Sbjct:   75 CKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYS--CPRQKNCLIDRTSRNRCQHCRLQKCLAVGMS 141

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BLAST of Nuclear receptor 2DBD gamma vs. Ensembl Human
Match: RORA (RAR related orphan receptor A [Source:HGNC Symbol;Acc:HGNC:10258])

HSP 1 Score: 98.2117 bits (243), Expect = 7.216e-21
Identity = 42/85 (49.41%), Postives = 55/85 (64.71%), Query Frame = 3

Query:  780 KFDISKIPCRVCGGKSSGFHFGALTCEGCKGFFRRTESTKQHLACITGNNNCCLTGSSSRNLCKSCRFNRCLGVGMSKKGSRIGR 1034
            K  I  IPC++CG KSSG H+G +TCEGCKGFFRR++ +    +C    N  CL   +SRN C+ CR  +CL VGMS+   + GR
Sbjct:   10 KAQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKN--CLIDRTSRNRCQHCRLQKCLAVGMSRDAVKFGR 92

HSP 2 Score: 63.5438 bits (153), Expect = 7.774e-10
Identity = 26/75 (34.67%), Postives = 45/75 (60.00%), Query Frame = 3

Query:  528 KMESQLCQVCRESAAGFHHGAYVCEACKKFFMRHNLNSTKFTIPCPTGGQCAQLKTGRIKCQSCRFKKCVSIGMA 752
            ++E   C++C + ++G H+G   CE CK FF R   ++  ++  CP    C   +T R +CQ CR +KC+++GM+
Sbjct:   12 QIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYS--CPRQKNCLIDRTSRNRCQHCRLQKCLAVGMS 84

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BLAST of Nuclear receptor 2DBD gamma vs. Ensembl Human
Match: RORA (RAR related orphan receptor A [Source:HGNC Symbol;Acc:HGNC:10258])

HSP 1 Score: 97.4413 bits (241), Expect = 1.777e-20
Identity = 42/85 (49.41%), Postives = 55/85 (64.71%), Query Frame = 3

Query:  780 KFDISKIPCRVCGGKSSGFHFGALTCEGCKGFFRRTESTKQHLACITGNNNCCLTGSSSRNLCKSCRFNRCLGVGMSKKGSRIGR 1034
            K  I  IPC++CG KSSG H+G +TCEGCKGFFRR++ +    +C    N  CL   +SRN C+ CR  +CL VGMS+   + GR
Sbjct:   90 KAQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKN--CLIDRTSRNRCQHCRLQKCLAVGMSRDAVKFGR 172

HSP 2 Score: 63.5438 bits (153), Expect = 8.267e-10
Identity = 26/75 (34.67%), Postives = 45/75 (60.00%), Query Frame = 3

Query:  528 KMESQLCQVCRESAAGFHHGAYVCEACKKFFMRHNLNSTKFTIPCPTGGQCAQLKTGRIKCQSCRFKKCVSIGMA 752
            ++E   C++C + ++G H+G   CE CK FF R   ++  ++  CP    C   +T R +CQ CR +KC+++GM+
Sbjct:   92 QIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYS--CPRQKNCLIDRTSRNRCQHCRLQKCLAVGMS 164

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BLAST of Nuclear receptor 2DBD gamma vs. Ensembl Human
Match: PPARG (peroxisome proliferator activated receptor gamma [Source:HGNC Symbol;Acc:HGNC:9236])

HSP 1 Score: 95.5153 bits (236), Expect = 1.806e-20
Identity = 80/252 (31.75%), Postives = 118/252 (46.83%), Query Frame = 3

Query:  798 IPCRVCGGKSSGFHFGALTCEGCKGFFRRTESTKQHLACITGNNNCCLTGSSSRNLCKSCRFNRCLGVGMSKKGSRIGRQPNAVKFHCVLEIMQRTCDQYDGASESANDNSKRKSVFHRAYRKVCQQSQKNLIRCSQNHFDKLKNDLSIFDTKDIFYSNEEKFIFESSLKEATRIIEISKANLQDLSSRQFSK-KYLTLNDLWNYMMNNFDVHSAMIVQFVKAIPGFNKFELKSRRSLVQDAMYPIMLLKLA 1550
            I CRVCG K+SGFH+G   CEGCKGFFRRT   K  L     + NC +    SRN C+ CRF +CL VGMS    R GR P A K   + EI     DQ +   ESA+  +  K ++    +       K     +    D  K+   I+D   +    E+K  F    K  T + E SK    +++ R F   ++ ++  +              I ++ K+IPGF   +L  + +L++  ++ I+   LA
Sbjct:  107 IECRVCGDKASGFHYGVHACEGCKGFFRRTIRLK--LIYDRCDLNCRI-HKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAEKEKLLAEI-SSDIDQLN--PESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTD--KSPFVIYDMNSLMM-GEDKIKF----KHITPLQEQSK----EVAIRIFQGCQFRSVEAVQE------------ITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA 329

HSP 2 Score: 60.077 bits (144), Expect = 6.547e-9
Identity = 29/69 (42.03%), Postives = 40/69 (57.97%), Query Frame = 3

Query:  546 CQVCRESAAGFHHGAYVCEACKKFFMRHNLNSTKFTIPCPTGGQCAQLKTGRIKCQSCRFKKCVSIGMA 752
            C+VC + A+GFH+G + CE CK FF R  +        C     C   K  R KCQ CRF+KC+++GM+
Sbjct:  109 CRVCGDKASGFHYGVHACEGCKGFF-RRTIRLKLIYDRCDLN--CRIHKKSRNKCQYCRFQKCLAVGMS 174

[Close]

BLAST of Nuclear receptor 2DBD gamma vs. Ensembl Human
Match: RORA (RAR related orphan receptor A [Source:HGNC Symbol;Acc:HGNC:10258])

HSP 1 Score: 97.0561 bits (240), Expect = 2.305e-20
Identity = 41/82 (50.00%), Postives = 54/82 (65.85%), Query Frame = 3

Query:  789 ISKIPCRVCGGKSSGFHFGALTCEGCKGFFRRTESTKQHLACITGNNNCCLTGSSSRNLCKSCRFNRCLGVGMSKKGSRIGR 1034
            I  IPC++CG KSSG H+G +TCEGCKGFFRR++ +    +C    N  CL   +SRN C+ CR  +CL VGMS+   + GR
Sbjct:   68 IEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKN--CLIDRTSRNRCQHCRLQKCLAVGMSRDAVKFGR 147

HSP 2 Score: 63.929 bits (154), Expect = 7.146e-10
Identity = 26/75 (34.67%), Postives = 45/75 (60.00%), Query Frame = 3

Query:  528 KMESQLCQVCRESAAGFHHGAYVCEACKKFFMRHNLNSTKFTIPCPTGGQCAQLKTGRIKCQSCRFKKCVSIGMA 752
            ++E   C++C + ++G H+G   CE CK FF R   ++  ++  CP    C   +T R +CQ CR +KC+++GM+
Sbjct:   67 QIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYS--CPRQKNCLIDRTSRNRCQHCRLQKCLAVGMS 139

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BLAST of Nuclear receptor 2DBD gamma vs. Ensembl Celegans
Match: nhr-23 (Nuclear hormone receptor family member nhr-23 [Source:UniProtKB/Swiss-Prot;Acc:P41828])

HSP 1 Score: 90.5077 bits (223), Expect = 5.801e-19
Identity = 39/82 (47.56%), Postives = 54/82 (65.85%), Query Frame = 3

Query:  789 ISKIPCRVCGGKSSGFHFGALTCEGCKGFFRRTESTKQHLACITGNNNCCLTGSSSRNLCKSCRFNRCLGVGMSKKGSRIGR 1034
            I  IPC+VCG KSSG H+G +TCEGCKGFFRR++S+  +  C    N  C+    +RN C+ CR  +C+ +GMS+   + GR
Sbjct:    7 IEVIPCKVCGDKSSGVHYGVITCEGCKGFFRRSQSSIVNYQCPRQKN--CVVDRVNRNRCQYCRLKKCIELGMSRDAVKFGR 86

HSP 2 Score: 61.6178 bits (148), Expect = 9.562e-10
Identity = 27/75 (36.00%), Postives = 41/75 (54.67%), Query Frame = 3

Query:  528 KMESQLCQVCRESAAGFHHGAYVCEACKKFFMRHNLNSTKFTIPCPTGGQCAQLKTGRIKCQSCRFKKCVSIGMA 752
            ++E   C+VC + ++G H+G   CE CK FF R   +   +   CP    C   +  R +CQ CR KKC+ +GM+
Sbjct:    6 QIEVIPCKVCGDKSSGVHYGVITCEGCKGFFRRSQSSIVNYQ--CPRQKNCVVDRVNRNRCQYCRLKKCIELGMS 78

[Close]

BLAST of Nuclear receptor 2DBD gamma vs. Ensembl Celegans
Match: nhr-23 (Nuclear hormone receptor family member nhr-23 [Source:UniProtKB/Swiss-Prot;Acc:P41828])

HSP 1 Score: 90.5077 bits (223), Expect = 5.977e-19
Identity = 39/82 (47.56%), Postives = 54/82 (65.85%), Query Frame = 3

Query:  789 ISKIPCRVCGGKSSGFHFGALTCEGCKGFFRRTESTKQHLACITGNNNCCLTGSSSRNLCKSCRFNRCLGVGMSKKGSRIGR 1034
            I  IPC+VCG KSSG H+G +TCEGCKGFFRR++S+  +  C    N  C+    +RN C+ CR  +C+ +GMS+   + GR
Sbjct:    7 IEVIPCKVCGDKSSGVHYGVITCEGCKGFFRRSQSSIVNYQCPRQKN--CVVDRVNRNRCQYCRLKKCIELGMSRDAVKFGR 86

HSP 2 Score: 61.6178 bits (148), Expect = 1.002e-9
Identity = 27/75 (36.00%), Postives = 41/75 (54.67%), Query Frame = 3

Query:  528 KMESQLCQVCRESAAGFHHGAYVCEACKKFFMRHNLNSTKFTIPCPTGGQCAQLKTGRIKCQSCRFKKCVSIGMA 752
            ++E   C+VC + ++G H+G   CE CK FF R   +   +   CP    C   +  R +CQ CR KKC+ +GM+
Sbjct:    6 QIEVIPCKVCGDKSSGVHYGVITCEGCKGFFRRSQSSIVNYQ--CPRQKNCVVDRVNRNRCQYCRLKKCIELGMS 78

[Close]

BLAST of Nuclear receptor 2DBD gamma vs. Ensembl Celegans
Match: nhr-23 (Nuclear hormone receptor family member nhr-23 [Source:UniProtKB/Swiss-Prot;Acc:P41828])

HSP 1 Score: 90.5077 bits (223), Expect = 1.168e-18
Identity = 39/82 (47.56%), Postives = 54/82 (65.85%), Query Frame = 3

Query:  789 ISKIPCRVCGGKSSGFHFGALTCEGCKGFFRRTESTKQHLACITGNNNCCLTGSSSRNLCKSCRFNRCLGVGMSKKGSRIGR 1034
            I  IPC+VCG KSSG H+G +TCEGCKGFFRR++S+  +  C    N  C+    +RN C+ CR  +C+ +GMS+   + GR
Sbjct:  123 IEVIPCKVCGDKSSGVHYGVITCEGCKGFFRRSQSSIVNYQCPRQKN--CVVDRVNRNRCQYCRLKKCIELGMSRDAVKFGR 202

HSP 2 Score: 63.1586 bits (152), Expect = 4.778e-10
Identity = 29/85 (34.12%), Postives = 44/85 (51.76%), Query Frame = 3

Query:  498 PESAFYDYQQKMESQLCQVCRESAAGFHHGAYVCEACKKFFMRHNLNSTKFTIPCPTGGQCAQLKTGRIKCQSCRFKKCVSIGMA 752
            PE+       ++E   C+VC + ++G H+G   CE CK FF R   +   +   CP    C   +  R +CQ CR KKC+ +GM+
Sbjct:  112 PENKSLLVSAQIEVIPCKVCGDKSSGVHYGVITCEGCKGFFRRSQSSIVNYQ--CPRQKNCVVDRVNRNRCQYCRLKKCIELGMS 194

[Close]

BLAST of Nuclear receptor 2DBD gamma vs. Ensembl Celegans
Match: nhr-23 (Nuclear hormone receptor family member nhr-23 [Source:UniProtKB/Swiss-Prot;Acc:P41828])

HSP 1 Score: 90.1225 bits (222), Expect = 1.371e-18
Identity = 39/82 (47.56%), Postives = 54/82 (65.85%), Query Frame = 3

Query:  789 ISKIPCRVCGGKSSGFHFGALTCEGCKGFFRRTESTKQHLACITGNNNCCLTGSSSRNLCKSCRFNRCLGVGMSKKGSRIGR 1034
            I  IPC+VCG KSSG H+G +TCEGCKGFFRR++S+  +  C    N  C+    +RN C+ CR  +C+ +GMS+   + GR
Sbjct:  123 IEVIPCKVCGDKSSGVHYGVITCEGCKGFFRRSQSSIVNYQCPRQKN--CVVDRVNRNRCQYCRLKKCIELGMSRDAVKFGR 202

HSP 2 Score: 63.1586 bits (152), Expect = 5.106e-10
Identity = 29/85 (34.12%), Postives = 44/85 (51.76%), Query Frame = 3

Query:  498 PESAFYDYQQKMESQLCQVCRESAAGFHHGAYVCEACKKFFMRHNLNSTKFTIPCPTGGQCAQLKTGRIKCQSCRFKKCVSIGMA 752
            PE+       ++E   C+VC + ++G H+G   CE CK FF R   +   +   CP    C   +  R +CQ CR KKC+ +GM+
Sbjct:  112 PENKSLLVSAQIEVIPCKVCGDKSSGVHYGVITCEGCKGFFRRSQSSIVNYQ--CPRQKNCVVDRVNRNRCQYCRLKKCIELGMS 194

[Close]

BLAST of Nuclear receptor 2DBD gamma vs. Ensembl Celegans
Match: nhr-23 (Nuclear hormone receptor family member nhr-23 [Source:UniProtKB/Swiss-Prot;Acc:P41828])

HSP 1 Score: 90.1225 bits (222), Expect = 1.467e-18
Identity = 39/82 (47.56%), Postives = 54/82 (65.85%), Query Frame = 3

Query:  789 ISKIPCRVCGGKSSGFHFGALTCEGCKGFFRRTESTKQHLACITGNNNCCLTGSSSRNLCKSCRFNRCLGVGMSKKGSRIGR 1034
            I  IPC+VCG KSSG H+G +TCEGCKGFFRR++S+  +  C    N  C+    +RN C+ CR  +C+ +GMS+   + GR
Sbjct:  158 IEVIPCKVCGDKSSGVHYGVITCEGCKGFFRRSQSSIVNYQCPRQKN--CVVDRVNRNRCQYCRLKKCIELGMSRDAVKFGR 237

HSP 2 Score: 62.7734 bits (151), Expect = 5.495e-10
Identity = 29/85 (34.12%), Postives = 44/85 (51.76%), Query Frame = 3

Query:  498 PESAFYDYQQKMESQLCQVCRESAAGFHHGAYVCEACKKFFMRHNLNSTKFTIPCPTGGQCAQLKTGRIKCQSCRFKKCVSIGMA 752
            PE+       ++E   C+VC + ++G H+G   CE CK FF R   +   +   CP    C   +  R +CQ CR KKC+ +GM+
Sbjct:  147 PENKSLLVSAQIEVIPCKVCGDKSSGVHYGVITCEGCKGFFRRSQSSIVNYQ--CPRQKNCVVDRVNRNRCQYCRLKKCIELGMS 229

[Close]

BLAST of Nuclear receptor 2DBD gamma vs. Ensembl Fly
Match: eg (gene:FBgn0000560 transcript:FBtr0078437)

HSP 1 Score: 100.523 bits (249), Expect = 2.281e-22
Identity = 49/96 (51.04%), Postives = 63/96 (65.62%), Query Frame = 3

Query:  804 CRVCGGKSSGFHFGALTCEGCKGFFRRTESTKQHLACITG--NNNCCLTGSSSRNLCKSCRFNRCLGVGMSKKGSRIGRQPNAVKFHCVLEIMQRT 1085
            C+VCG  ++GFHFGA TCEGCK FF RT +   ++A I G  +N  C+    +R  CK+CR  +CL VGMSK GSR GR+ N  K HC+L+  Q T
Sbjct:    5 CKVCGEPAAGFHFGAFTCEGCKSFFGRTYN---NIAAIAGCKHNGDCVINKKNRTACKACRLRKCLLVGMSKSGSRYGRRSNWFKIHCLLQEQQTT 97

HSP 2 Score: 72.4034 bits (176), Expect = 4.150e-13
Identity = 33/71 (46.48%), Postives = 42/71 (59.15%), Query Frame = 3

Query:  540 QLCQVCRESAAGFHHGAYVCEACKKFFMRHNLNSTKFTIPCPTGGQCAQLKTGRIKCQSCRFKKCVSIGMA 752
            QLC+VC E AAGFH GA+ CE CK FF R   N+      C   G C   K  R  C++CR +KC+ +GM+
Sbjct:    3 QLCKVCGEPAAGFHFGAFTCEGCKSFFGR-TYNNIAAIAGCKHNGDCVINKKNRTACKACRLRKCLLVGMS 72

[Close]

BLAST of Nuclear receptor 2DBD gamma vs. Ensembl Fly
Match: eg (gene:FBgn0000560 transcript:FBtr0078438)

HSP 1 Score: 100.523 bits (249), Expect = 2.281e-22
Identity = 49/96 (51.04%), Postives = 63/96 (65.62%), Query Frame = 3

Query:  804 CRVCGGKSSGFHFGALTCEGCKGFFRRTESTKQHLACITG--NNNCCLTGSSSRNLCKSCRFNRCLGVGMSKKGSRIGRQPNAVKFHCVLEIMQRT 1085
            C+VCG  ++GFHFGA TCEGCK FF RT +   ++A I G  +N  C+    +R  CK+CR  +CL VGMSK GSR GR+ N  K HC+L+  Q T
Sbjct:    5 CKVCGEPAAGFHFGAFTCEGCKSFFGRTYN---NIAAIAGCKHNGDCVINKKNRTACKACRLRKCLLVGMSKSGSRYGRRSNWFKIHCLLQEQQTT 97

HSP 2 Score: 72.4034 bits (176), Expect = 4.150e-13
Identity = 33/71 (46.48%), Postives = 42/71 (59.15%), Query Frame = 3

Query:  540 QLCQVCRESAAGFHHGAYVCEACKKFFMRHNLNSTKFTIPCPTGGQCAQLKTGRIKCQSCRFKKCVSIGMA 752
            QLC+VC E AAGFH GA+ CE CK FF R   N+      C   G C   K  R  C++CR +KC+ +GM+
Sbjct:    3 QLCKVCGEPAAGFHFGAFTCEGCKSFFGR-TYNNIAAIAGCKHNGDCVINKKNRTACKACRLRKCLLVGMS 72

[Close]

BLAST of Nuclear receptor 2DBD gamma vs. Ensembl Fly
Match: Hr3 (gene:FBgn0000448 transcript:FBtr0088368)

HSP 1 Score: 100.523 bits (249), Expect = 5.501e-22
Identity = 48/111 (43.24%), Postives = 67/111 (60.36%), Query Frame = 3

Query:  750 ALQNPNNGNSKFDISKIPCRVCGGKSSGFHFGALTCEGCKGFFRRTESTKQHLACITGNNNCCLTGSSSRNLCKSCRFNRCLGVGMSKKGSRIGRQP--------NAVKFH 1058
            A QN ++G+ K  I  IPC+VCG KSSG H+G +TCEGCKGFFRR++S+  +  C    N  C+    +RN C+ CR  +CL +GMS+   + GR          + V+FH
Sbjct:   33 AGQNNSSGSIKAQIEIIPCKVCGDKSSGVHYGVITCEGCKGFFRRSQSSVVNYQC--PRNKQCVVDRVNRNRCQYCRLQKCLKLGMSRDAVKFGRMSKKQREKVEDEVRFH 141

HSP 2 Score: 65.0846 bits (157), Expect = 1.092e-10
Identity = 27/69 (39.13%), Postives = 39/69 (56.52%), Query Frame = 3

Query:  546 CQVCRESAAGFHHGAYVCEACKKFFMRHNLNSTKFTIPCPTGGQCAQLKTGRIKCQSCRFKKCVSIGMA 752
            C+VC + ++G H+G   CE CK FF R    S+     CP   QC   +  R +CQ CR +KC+ +GM+
Sbjct:   51 CKVCGDKSSGVHYGVITCEGCKGFFRRS--QSSVVNYQCPRNKQCVVDRVNRNRCQYCRLQKCLKLGMS 117

[Close]

BLAST of Nuclear receptor 2DBD gamma vs. Ensembl Fly
Match: Hr3 (gene:FBgn0000448 transcript:FBtr0306345)

HSP 1 Score: 100.523 bits (249), Expect = 5.501e-22
Identity = 48/111 (43.24%), Postives = 67/111 (60.36%), Query Frame = 3

Query:  750 ALQNPNNGNSKFDISKIPCRVCGGKSSGFHFGALTCEGCKGFFRRTESTKQHLACITGNNNCCLTGSSSRNLCKSCRFNRCLGVGMSKKGSRIGRQP--------NAVKFH 1058
            A QN ++G+ K  I  IPC+VCG KSSG H+G +TCEGCKGFFRR++S+  +  C    N  C+    +RN C+ CR  +CL +GMS+   + GR          + V+FH
Sbjct:   33 AGQNNSSGSIKAQIEIIPCKVCGDKSSGVHYGVITCEGCKGFFRRSQSSVVNYQC--PRNKQCVVDRVNRNRCQYCRLQKCLKLGMSRDAVKFGRMSKKQREKVEDEVRFH 141

HSP 2 Score: 65.0846 bits (157), Expect = 1.092e-10
Identity = 27/69 (39.13%), Postives = 39/69 (56.52%), Query Frame = 3

Query:  546 CQVCRESAAGFHHGAYVCEACKKFFMRHNLNSTKFTIPCPTGGQCAQLKTGRIKCQSCRFKKCVSIGMA 752
            C+VC + ++G H+G   CE CK FF R    S+     CP   QC   +  R +CQ CR +KC+ +GM+
Sbjct:   51 CKVCGDKSSGVHYGVITCEGCKGFFRRS--QSSVVNYQCPRNKQCVVDRVNRNRCQYCRLQKCLKLGMS 117

[Close]

BLAST of Nuclear receptor 2DBD gamma vs. Ensembl Fly
Match: Hr3 (gene:FBgn0000448 transcript:FBtr0112799)

HSP 1 Score: 100.138 bits (248), Expect = 7.480e-22
Identity = 49/114 (42.98%), Postives = 67/114 (58.77%), Query Frame = 3

Query:  747 MALQNPNNGNS--KFDISKIPCRVCGGKSSGFHFGALTCEGCKGFFRRTESTKQHLACITGNNNCCLTGSSSRNLCKSCRFNRCLGVGMSKKGSRIGRQP--------NAVKFH 1058
            M L NP+N  S  +  I  IPC+VCG KSSG H+G +TCEGCKGFFRR++S+  +  C    N  C+    +RN C+ CR  +CL +GMS+   + GR          + V+FH
Sbjct:    1 MRLLNPDNMPSTIRAQIEIIPCKVCGDKSSGVHYGVITCEGCKGFFRRSQSSVVNYQC--PRNKQCVVDRVNRNRCQYCRLQKCLKLGMSRDAVKFGRMSKKQREKVEDEVRFH 112

HSP 2 Score: 66.2402 bits (160), Expect = 5.459e-11
Identity = 29/90 (32.22%), Postives = 48/90 (53.33%), Query Frame = 3

Query:  483 LTFTSPESAFYDYQQKMESQLCQVCRESAAGFHHGAYVCEACKKFFMRHNLNSTKFTIPCPTGGQCAQLKTGRIKCQSCRFKKCVSIGMA 752
            +   +P++     + ++E   C+VC + ++G H+G   CE CK FF R    S+     CP   QC   +  R +CQ CR +KC+ +GM+
Sbjct:    1 MRLLNPDNMPSTIRAQIEIIPCKVCGDKSSGVHYGVITCEGCKGFFRRS--QSSVVNYQCPRNKQCVVDRVNRNRCQYCRLQKCLKLGMS 88

[Close]

BLAST of Nuclear receptor 2DBD gamma vs. Ensembl Zebrafish
Match: roraa (RAR-related orphan receptor A, paralog a [Source:NCBI gene;Acc:564951])

HSP 1 Score: 97.4413 bits (241), Expect = 8.313e-21
Identity = 42/85 (49.41%), Postives = 55/85 (64.71%), Query Frame = 3

Query:  780 KFDISKIPCRVCGGKSSGFHFGALTCEGCKGFFRRTESTKQHLACITGNNNCCLTGSSSRNLCKSCRFNRCLGVGMSKKGSRIGR 1034
            K  I  IPC++CG KSSG H+G +TCEGCKGFFRR++ +    +C    N  CL   +SRN C+ CR  +CL VGMS+   + GR
Sbjct:   10 KAQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNAAYSCPRQKN--CLIDRTSRNRCQHCRLQKCLAVGMSRDAVKFGR 92

HSP 2 Score: 63.5438 bits (153), Expect = 5.396e-10
Identity = 26/75 (34.67%), Postives = 45/75 (60.00%), Query Frame = 3

Query:  528 KMESQLCQVCRESAAGFHHGAYVCEACKKFFMRHNLNSTKFTIPCPTGGQCAQLKTGRIKCQSCRFKKCVSIGMA 752
            ++E   C++C + ++G H+G   CE CK FF R   ++  ++  CP    C   +T R +CQ CR +KC+++GM+
Sbjct:   12 QIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNAAYS--CPRQKNCLIDRTSRNRCQHCRLQKCLAVGMS 84

[Close]

BLAST of Nuclear receptor 2DBD gamma vs. Ensembl Zebrafish
Match: roraa (RAR-related orphan receptor A, paralog a [Source:NCBI gene;Acc:564951])

HSP 1 Score: 96.2857 bits (238), Expect = 1.541e-20
Identity = 41/82 (50.00%), Postives = 54/82 (65.85%), Query Frame = 3

Query:  789 ISKIPCRVCGGKSSGFHFGALTCEGCKGFFRRTESTKQHLACITGNNNCCLTGSSSRNLCKSCRFNRCLGVGMSKKGSRIGR 1034
            I  IPC++CG KSSG H+G +TCEGCKGFFRR++ +    +C    N  CL   +SRN C+ CR  +CL VGMS+   + GR
Sbjct:    3 IEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNAAYSCPRQKN--CLIDRTSRNRCQHCRLQKCLAVGMSRDAVKFGR 82

HSP 2 Score: 63.5438 bits (153), Expect = 4.614e-10
Identity = 26/75 (34.67%), Postives = 45/75 (60.00%), Query Frame = 3

Query:  528 KMESQLCQVCRESAAGFHHGAYVCEACKKFFMRHNLNSTKFTIPCPTGGQCAQLKTGRIKCQSCRFKKCVSIGMA 752
            ++E   C++C + ++G H+G   CE CK FF R   ++  ++  CP    C   +T R +CQ CR +KC+++GM+
Sbjct:    2 QIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNAAYS--CPRQKNCLIDRTSRNRCQHCRLQKCLAVGMS 74

[Close]

BLAST of Nuclear receptor 2DBD gamma vs. Ensembl Zebrafish
Match: rorab (RAR-related orphan receptor A, paralog b [Source:NCBI gene;Acc:554722])

HSP 1 Score: 96.2857 bits (238), Expect = 1.703e-20
Identity = 41/85 (48.24%), Postives = 53/85 (62.35%), Query Frame = 3

Query:  780 KFDISKIPCRVCGGKSSGFHFGALTCEGCKGFFRRTESTKQHLACITGNNNCCLTGSSSRNLCKSCRFNRCLGVGMSKKGSRIGR 1034
            K  I  IPC++CG KSSG H+G +TCEGCKGFFRR++      +C       CL   +SRN C+ CR  +CL VGMS+   + GR
Sbjct:    9 KAQIESIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQGTVSYSC--PRQKSCLIDRTSRNRCQHCRLQKCLAVGMSRDAVKFGR 91

HSP 2 Score: 67.0106 bits (162), Expect = 4.321e-11
Identity = 27/75 (36.00%), Postives = 45/75 (60.00%), Query Frame = 3

Query:  528 KMESQLCQVCRESAAGFHHGAYVCEACKKFFMRHNLNSTKFTIPCPTGGQCAQLKTGRIKCQSCRFKKCVSIGMA 752
            ++ES  C++C + ++G H+G   CE CK FF R    +  ++  CP    C   +T R +CQ CR +KC+++GM+
Sbjct:   11 QIESIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQGTVSYS--CPRQKSCLIDRTSRNRCQHCRLQKCLAVGMS 83

[Close]

BLAST of Nuclear receptor 2DBD gamma vs. Ensembl Zebrafish
Match: rorc (RAR-related orphan receptor C [Source:ZFIN;Acc:ZDB-GENE-110411-42])

HSP 1 Score: 92.0485 bits (227), Expect = 2.542e-20
Identity = 40/85 (47.06%), Postives = 56/85 (65.88%), Query Frame = 3

Query:  780 KFDISKIPCRVCGGKSSGFHFGALTCEGCKGFFRRTESTKQHLACITGNNNCCLTGSSSRNLCKSCRFNRCLGVGMSKKGSRIGR 1034
            +  I  IPC++CG KSSG H+G +TCEGCKGFFRR++S+    +C   +N  C    +SRN C+SCR  +C+  GMS+   + GR
Sbjct:    2 RAQIEVIPCKICGDKSSGVHYGVITCEGCKGFFRRSQSSSVQYSCSRQSN--CPIDRASRNRCQSCRLKKCVAQGMSRDAVKFGR 84

HSP 2 Score: 62.003 bits (149), Expect = 4.442e-10
Identity = 28/75 (37.33%), Postives = 44/75 (58.67%), Query Frame = 3

Query:  528 KMESQLCQVCRESAAGFHHGAYVCEACKKFFMRHNLNSTKFTIPCPTGGQCAQLKTGRIKCQSCRFKKCVSIGMA 752
            ++E   C++C + ++G H+G   CE CK FF R   +S +++  C     C   +  R +CQSCR KKCV+ GM+
Sbjct:    4 QIEVIPCKICGDKSSGVHYGVITCEGCKGFFRRSQSSSVQYS--CSRQSNCPIDRASRNRCQSCRLKKCVAQGMS 76

[Close]

BLAST of Nuclear receptor 2DBD gamma vs. Ensembl Zebrafish
Match: rorab (RAR-related orphan receptor A, paralog b [Source:NCBI gene;Acc:554722])

HSP 1 Score: 95.5153 bits (236), Expect = 3.919e-20
Identity = 40/82 (48.78%), Postives = 52/82 (63.41%), Query Frame = 3

Query:  789 ISKIPCRVCGGKSSGFHFGALTCEGCKGFFRRTESTKQHLACITGNNNCCLTGSSSRNLCKSCRFNRCLGVGMSKKGSRIGR 1034
            I  IPC++CG KSSG H+G +TCEGCKGFFRR++      +C       CL   +SRN C+ CR  +CL VGMS+   + GR
Sbjct:   11 IESIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQGTVSYSC--PRQKSCLIDRTSRNRCQHCRLQKCLAVGMSRDAVKFGR 90

HSP 2 Score: 69.3218 bits (168), Expect = 8.183e-12
Identity = 29/81 (35.80%), Postives = 47/81 (58.02%), Query Frame = 3

Query:  510 FYDYQQKMESQLCQVCRESAAGFHHGAYVCEACKKFFMRHNLNSTKFTIPCPTGGQCAQLKTGRIKCQSCRFKKCVSIGMA 752
            F   Q ++ES  C++C + ++G H+G   CE CK FF R    +  ++  CP    C   +T R +CQ CR +KC+++GM+
Sbjct:    4 FITKQSQIESIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQGTVSYS--CPRQKSCLIDRTSRNRCQHCRLQKCLAVGMS 82

[Close]

BLAST of Nuclear receptor 2DBD gamma vs. Ensembl Xenopus
Match: kcnk4 (potassium channel, two pore domain subfamily K, member 4 [Source:Xenbase;Acc:XB-GENE-994204])

HSP 1 Score: 98.2117 bits (243), Expect = 5.025e-21
Identity = 49/120 (40.83%), Postives = 65/120 (54.17%), Query Frame = 3

Query:  780 KFDISKIPCRVCGGKSSGFHFGALTCEGCKGFFRRTESTKQHLACITGNNNCCLTGSSSRNLCKSCRFNRCLGVGMSKKGSRIGRQPNAVKFHCVLEI------MQRTCDQYDGASESAN 1121
            K  I  IPC++CG KSSG H+G +TCEGCKGFFRR++ +    +C    N  CL   +SRN C+ CR  +CL VGMS+   + GR     +     E+       QR   Q  G +E  N
Sbjct:    9 KAQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKN--CLIDRTSRNRCQHCRLQKCLAVGMSRDAVKFGRMSKKQRDSLYAEVQKHRMQQQRDHQQPPGEAEPLN 126

HSP 2 Score: 63.5438 bits (153), Expect = 6.661e-10
Identity = 25/69 (36.23%), Postives = 42/69 (60.87%), Query Frame = 3

Query:  546 CQVCRESAAGFHHGAYVCEACKKFFMRHNLNSTKFTIPCPTGGQCAQLKTGRIKCQSCRFKKCVSIGMA 752
            C++C + ++G H+G   CE CK FF R   ++  ++  CP    C   +T R +CQ CR +KC+++GM+
Sbjct:   17 CKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYS--CPRQKNCLIDRTSRNRCQHCRLQKCLAVGMS 83

[Close]

BLAST of Nuclear receptor 2DBD gamma vs. Ensembl Xenopus
Match: kcnk4 (potassium channel, two pore domain subfamily K, member 4 [Source:Xenbase;Acc:XB-GENE-994204])

HSP 1 Score: 97.8265 bits (242), Expect = 8.450e-21
Identity = 49/122 (40.16%), Postives = 66/122 (54.10%), Query Frame = 3

Query:  774 NSKFDISKIPCRVCGGKSSGFHFGALTCEGCKGFFRRTESTKQHLACITGNNNCCLTGSSSRNLCKSCRFNRCLGVGMSKKGSRIGRQPNAVKFHCVLEI------MQRTCDQYDGASESAN 1121
            +S   I  IPC++CG KSSG H+G +TCEGCKGFFRR++ +    +C    N  CL   +SRN C+ CR  +CL VGMS+   + GR     +     E+       QR   Q  G +E  N
Sbjct:   25 HSTAQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKN--CLIDRTSRNRCQHCRLQKCLAVGMSRDAVKFGRMSKKQRDSLYAEVQKHRMQQQRDHQQPPGEAEPLN 144

HSP 2 Score: 63.5438 bits (153), Expect = 6.547e-10
Identity = 25/69 (36.23%), Postives = 42/69 (60.87%), Query Frame = 3

Query:  546 CQVCRESAAGFHHGAYVCEACKKFFMRHNLNSTKFTIPCPTGGQCAQLKTGRIKCQSCRFKKCVSIGMA 752
            C++C + ++G H+G   CE CK FF R   ++  ++  CP    C   +T R +CQ CR +KC+++GM+
Sbjct:   35 CKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYS--CPRQKNCLIDRTSRNRCQHCRLQKCLAVGMS 101

[Close]

BLAST of Nuclear receptor 2DBD gamma vs. Ensembl Xenopus
Match: kcnk4 (potassium channel, two pore domain subfamily K, member 4 [Source:Xenbase;Acc:XB-GENE-994204])

HSP 1 Score: 97.4413 bits (241), Expect = 8.689e-21
Identity = 48/117 (41.03%), Postives = 64/117 (54.70%), Query Frame = 3

Query:  789 ISKIPCRVCGGKSSGFHFGALTCEGCKGFFRRTESTKQHLACITGNNNCCLTGSSSRNLCKSCRFNRCLGVGMSKKGSRIGRQPNAVKFHCVLEI------MQRTCDQYDGASESAN 1121
            I  IPC++CG KSSG H+G +TCEGCKGFFRR++ +    +C    N  CL   +SRN C+ CR  +CL VGMS+   + GR     +     E+       QR   Q  G +E  N
Sbjct:    6 IEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKN--CLIDRTSRNRCQHCRLQKCLAVGMSRDAVKFGRMSKKQRDSLYAEVQKHRMQQQRDHQQPPGEAEPLN 120

HSP 2 Score: 63.5438 bits (153), Expect = 6.168e-10
Identity = 25/69 (36.23%), Postives = 42/69 (60.87%), Query Frame = 3

Query:  546 CQVCRESAAGFHHGAYVCEACKKFFMRHNLNSTKFTIPCPTGGQCAQLKTGRIKCQSCRFKKCVSIGMA 752
            C++C + ++G H+G   CE CK FF R   ++  ++  CP    C   +T R +CQ CR +KC+++GM+
Sbjct:   11 CKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYS--CPRQKNCLIDRTSRNRCQHCRLQKCLAVGMS 77

[Close]

BLAST of Nuclear receptor 2DBD gamma vs. Ensembl Xenopus
Match: kcnk4 (potassium channel, two pore domain subfamily K, member 4 [Source:Xenbase;Acc:XB-GENE-994204])

HSP 1 Score: 97.8265 bits (242), Expect = 9.725e-21
Identity = 49/122 (40.16%), Postives = 66/122 (54.10%), Query Frame = 3

Query:  774 NSKFDISKIPCRVCGGKSSGFHFGALTCEGCKGFFRRTESTKQHLACITGNNNCCLTGSSSRNLCKSCRFNRCLGVGMSKKGSRIGRQPNAVKFHCVLEI------MQRTCDQYDGASESAN 1121
            +S   I  IPC++CG KSSG H+G +TCEGCKGFFRR++ +    +C    N  CL   +SRN C+ CR  +CL VGMS+   + GR     +     E+       QR   Q  G +E  N
Sbjct:   62 HSTAQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKN--CLIDRTSRNRCQHCRLQKCLAVGMSRDAVKFGRMSKKQRDSLYAEVQKHRMQQQRDHQQPPGEAEPLN 181

HSP 2 Score: 63.5438 bits (153), Expect = 7.375e-10
Identity = 25/69 (36.23%), Postives = 42/69 (60.87%), Query Frame = 3

Query:  546 CQVCRESAAGFHHGAYVCEACKKFFMRHNLNSTKFTIPCPTGGQCAQLKTGRIKCQSCRFKKCVSIGMA 752
            C++C + ++G H+G   CE CK FF R   ++  ++  CP    C   +T R +CQ CR +KC+++GM+
Sbjct:   72 CKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYS--CPRQKNCLIDRTSRNRCQHCRLQKCLAVGMS 138

[Close]

BLAST of Nuclear receptor 2DBD gamma vs. Ensembl Xenopus
Match: kcnk4 (potassium channel, two pore domain subfamily K, member 4 [Source:Xenbase;Acc:XB-GENE-994204])

HSP 1 Score: 97.4413 bits (241), Expect = 1.033e-20
Identity = 48/117 (41.03%), Postives = 64/117 (54.70%), Query Frame = 3

Query:  789 ISKIPCRVCGGKSSGFHFGALTCEGCKGFFRRTESTKQHLACITGNNNCCLTGSSSRNLCKSCRFNRCLGVGMSKKGSRIGRQPNAVKFHCVLEI------MQRTCDQYDGASESAN 1121
            I  IPC++CG KSSG H+G +TCEGCKGFFRR++ +    +C    N  CL   +SRN C+ CR  +CL VGMS+   + GR     +     E+       QR   Q  G +E  N
Sbjct:    4 IEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKN--CLIDRTSRNRCQHCRLQKCLAVGMSRDAVKFGRMSKKQRDSLYAEVQKHRMQQQRDHQQPPGEAEPLN 118

HSP 2 Score: 63.5438 bits (153), Expect = 6.637e-10
Identity = 25/69 (36.23%), Postives = 42/69 (60.87%), Query Frame = 3

Query:  546 CQVCRESAAGFHHGAYVCEACKKFFMRHNLNSTKFTIPCPTGGQCAQLKTGRIKCQSCRFKKCVSIGMA 752
            C++C + ++G H+G   CE CK FF R   ++  ++  CP    C   +T R +CQ CR +KC+++GM+
Sbjct:    9 CKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYS--CPRQKNCLIDRTSRNRCQHCRLQKCLAVGMS 75

[Close]

BLAST of Nuclear receptor 2DBD gamma vs. Ensembl Mouse
Match: Rora (RAR-related orphan receptor alpha [Source:MGI Symbol;Acc:MGI:104661])

HSP 1 Score: 98.2117 bits (243), Expect = 4.872e-21
Identity = 42/85 (49.41%), Postives = 55/85 (64.71%), Query Frame = 3

Query:  780 KFDISKIPCRVCGGKSSGFHFGALTCEGCKGFFRRTESTKQHLACITGNNNCCLTGSSSRNLCKSCRFNRCLGVGMSKKGSRIGR 1034
            K  I  IPC++CG KSSG H+G +TCEGCKGFFRR++ +    +C    N  CL   +SRN C+ CR  +CL VGMS+   + GR
Sbjct:    9 KAQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKN--CLIDRTSRNRCQHCRLQKCLAVGMSRDAVKFGR 91

HSP 2 Score: 63.5438 bits (153), Expect = 5.809e-10
Identity = 26/75 (34.67%), Postives = 45/75 (60.00%), Query Frame = 3

Query:  528 KMESQLCQVCRESAAGFHHGAYVCEACKKFFMRHNLNSTKFTIPCPTGGQCAQLKTGRIKCQSCRFKKCVSIGMA 752
            ++E   C++C + ++G H+G   CE CK FF R   ++  ++  CP    C   +T R +CQ CR +KC+++GM+
Sbjct:   11 QIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYS--CPRQKNCLIDRTSRNRCQHCRLQKCLAVGMS 83

[Close]

BLAST of Nuclear receptor 2DBD gamma vs. Ensembl Mouse
Match: Ppara (peroxisome proliferator activated receptor alpha [Source:MGI Symbol;Acc:MGI:104740])

HSP 1 Score: 97.0561 bits (240), Expect = 9.052e-21
Identity = 86/312 (27.56%), Postives = 137/312 (43.91%), Query Frame = 3

Query:  798 IPCRVCGGKSSGFHFGALTCEGCKGFFRRTESTKQHLACITGNNNCCLTGSSSRNLCKSCRFNRCLGVGMSKKGSRIGRQPNAVKFHCVLEIMQRTCDQYDGASESANDNSKRKSVFHRAYRKVCQQSQKNLIRCSQNHFDKLKNDLSIFDTKDIFYSNEEKFIFESS----LKEATRIIEISKANLQDLSSRQFSKKYLTLNDLWNYMMNNFDVHSAM-IVQFVKAIPGFNKFELKSRRSLVQDAMYPIMLLKLAQDYKPDVDEYNYFDFSLIDREVILNNFQSFKRITDHLLSISRMVHSLQLSSYPISL 1718
            I CR+CG K+SG+H+G   CEGCKGFFRRT   K         +  C     +RN C+ CRF++CL VGMS    R GR P + K     EI+  TC+     SE+A+  S  K + H AY K               + +K+K  + +        SN   F+        + E T + ++    ++D   ++   ++        +      V +   + +F KAIPGF   +L  + +L++  +Y  +   L+     D     Y +   I RE + N  + F  I +     +   ++L+L    ISL
Sbjct:  100 IECRICGDKASGYHYGVHACEGCKGFFRRTIRLK---LVYDKCDRSCKIQKKNRNKCQYCRFHKCLSVGMSHNAIRFGRMPRSEKAKLKAEIL--TCEHDLKDSETADLKSLGKRI-HEAYLK-------------NFNMNKVKARVILAGKT----SNNPPFVIHDMETLCMAEKTLVAKMVANGVED---KEAEVRFF-------HCCQCMSVETVTELTEFAKAIPGFANLDLNDQVTLLKYGVYEAIFTMLSSLMNKDGMLIAYGN-GFITREFLKNLRKPFCDIMEPKFDFAMKFNALELDDSDISL 377

HSP 2 Score: 58.5362 bits (140), Expect = 2.142e-8
Identity = 28/69 (40.58%), Postives = 39/69 (56.52%), Query Frame = 3

Query:  546 CQVCRESAAGFHHGAYVCEACKKFFMRHNLNSTKFTIPCPTGGQCAQLKTGRIKCQSCRFKKCVSIGMA 752
            C++C + A+G+H+G + CE CK FF R  +        C     C   K  R KCQ CRF KC+S+GM+
Sbjct:  102 CRICGDKASGYHYGVHACEGCKGFF-RRTIRLKLVYDKCDR--SCKIQKKNRNKCQYCRFHKCLSVGMS 167

[Close]

Query:  798 IPCRVCGGKSSGFHFGALTCEGCKGFFRRTESTKQHLACITGNNNCCLTGSSSRNLCKSCRFNRCLGVGMSKKGSRIGRQPNAVKFHCVLEIMQRTCDQYDGASESANDNSKRKSVFHRAYRKVCQQSQKNLIRCSQNHFDKLKNDLSIFDTKDIFYSNEEKFIFESS----LKEATRIIEISKANLQDLSSRQFSKKYLTLNDLWNYMMNNFDVHSAM-IVQFVKAIPGFNKFELKSRRSLVQDAMYPIMLLKLAQDYKPDVDEYNYFDFSLIDREVILNNFQSFKRITDHLLSISRMVHSLQLSSYPISL 1718
            I CR+CG K+SG+H+G   CEGCKGFFRRT   K         +  C     +RN C+ CRF++CL VGMS    R GR P + K     EI+  TC+     SE+A+  S  K + H AY K               + +K+K  + +        SN   F+        + E T + ++    ++D   ++   ++        +      V +   + +F KAIPGF   +L  + +L++  +Y  +   L+     D     Y +   I RE + N  + F  I +     +   ++L+L    ISL
Sbjct:  100 IECRICGDKASGYHYGVHACEGCKGFFRRTIRLK---LVYDKCDRSCKIQKKNRNKCQYCRFHKCLSVGMSHNAIRFGRMPRSEKAKLKAEIL--TCEHDLKDSETADLKSLGKRI-HEAYLK-------------NFNMNKVKARVILAGKT----SNNPPFVIHDMETLCMAEKTLVAKMVANGVED---KEAEVRFF-------HCCQCMSVETVTELTEFAKAIPGFANLDLNDQVTLLKYGVYEAIFTMLSSLMNKDGMLIAYGN-GFITREFLKNLRKPFCDIMEPKFDFAMKFNALELDDSDISL 377

HSP 2 Score: 58.5362 bits (140), Expect = 2.142e-8
Identity = 28/69 (40.58%), Postives = 39/69 (56.52%), Query Frame = 3

Query:  546 CQVCRESAAGFHHGAYVCEACKKFFMRHNLNSTKFTIPCPTGGQCAQLKTGRIKCQSCRFKKCVSIGMA 752
            C++C + A+G+H+G + CE CK FF R  +        C     C   K  R KCQ CRF KC+S+GM+
Sbjct:  102 CRICGDKASGYHYGVHACEGCKGFF-RRTIRLKLVYDKCDR--SCKIQKKNRNKCQYCRFHKCLSVGMS 167

[Close]

Query:  798 IPCRVCGGKSSGFHFGALTCEGCKGFFRRTESTKQHLACITGNNNCCLTGSSSRNLCKSCRFNRCLGVGMSKKGSRIGRQPNAVKFHCVLEIMQRTCDQYDGASESANDNSKRKSVFHRAYRKVCQQSQKNLIRCSQNHFDKLKNDLSIFDTKDIFYSNEEKFIFESS----LKEATRIIEISKANLQDLSSRQFSKKYLTLNDLWNYMMNNFDVHSAM-IVQFVKAIPGFNKFELKSRRSLVQDAMYPIMLLKLAQDYKPDVDEYNYFDFSLIDREVILNNFQSFKRITDHLLSISRMVHSLQLSSYPISL 1718
            I CR+CG K+SG+H+G   CEGCKGFFRRT   K         +  C     +RN C+ CRF++CL VGMS    R GR P + K     EI+  TC+     SE+A+  S  K + H AY K               + +K+K  + +        SN   F+        + E T + ++    ++D   ++   ++        +      V +   + +F KAIPGF   +L  + +L++  +Y  +   L+     D     Y +   I RE + N  + F  I +     +   ++L+L    ISL
Sbjct:  100 IECRICGDKASGYHYGVHACEGCKGFFRRTIRLK---LVYDKCDRSCKIQKKNRNKCQYCRFHKCLSVGMSHNAIRFGRMPRSEKAKLKAEIL--TCEHDLKDSETADLKSLGKRI-HEAYLK-------------NFNMNKVKARVILAGKT----SNNPPFVIHDMETLCMAEKTLVAKMVANGVED---KEAEVRFF-------HCCQCMSVETVTELTEFAKAIPGFANLDLNDQVTLLKYGVYEAIFTMLSSLMNKDGMLIAYGN-GFITREFLKNLRKPFCDIMEPKFDFAMKFNALELDDSDISL 377

HSP 2 Score: 58.5362 bits (140), Expect = 2.142e-8
Identity = 28/69 (40.58%), Postives = 39/69 (56.52%), Query Frame = 3

Query:  546 CQVCRESAAGFHHGAYVCEACKKFFMRHNLNSTKFTIPCPTGGQCAQLKTGRIKCQSCRFKKCVSIGMA 752
            C++C + A+G+H+G + CE CK FF R  +        C     C   K  R KCQ CRF KC+S+GM+
Sbjct:  102 CRICGDKASGYHYGVHACEGCKGFF-RRTIRLKLVYDKCDR--SCKIQKKNRNKCQYCRFHKCLSVGMS 167

[Close]

BLAST of Nuclear receptor 2DBD gamma vs. Ensembl Mouse
Match: Pparg (peroxisome proliferator activated receptor gamma [Source:MGI Symbol;Acc:MGI:97747])

HSP 1 Score: 91.6633 bits (226), Expect = 1.807e-20
Identity = 48/92 (52.17%), Postives = 55/92 (59.78%), Query Frame = 3

Query:  798 IPCRVCGGKSSGFHFGALTCEGCKGFFRRTESTKQHLACITGNNNCCLTGSSSRNLCKSCRFNRCLGVGMSKKGSRIGRQPNAVKFHCVLEI 1073
            I CRVCG K+SGFH+G   CEGCKGFFRRT   K  L     + NC +    SRN C+ CRF +CL VGMS    R GR P A K   + EI
Sbjct:  107 IECRVCGDKASGFHYGVHACEGCKGFFRRTIRLK--LIYDRCDLNCRI-HKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAEKEKLLAEI 195

HSP 2 Score: 59.6918 bits (143), Expect = 1.972e-9
Identity = 29/69 (42.03%), Postives = 40/69 (57.97%), Query Frame = 3

Query:  546 CQVCRESAAGFHHGAYVCEACKKFFMRHNLNSTKFTIPCPTGGQCAQLKTGRIKCQSCRFKKCVSIGMA 752
            C+VC + A+GFH+G + CE CK FF R  +        C     C   K  R KCQ CRF+KC+++GM+
Sbjct:  109 CRVCGDKASGFHYGVHACEGCKGFF-RRTIRLKLIYDRCDLN--CRIHKKSRNKCQYCRFQKCLAVGMS 174

[Close]

BLAST of Nuclear receptor 2DBD gamma vs. UniProt/SwissProt
Match: sp|O18971|PPARG_BOVIN (Peroxisome proliferator-activated receptor gamma OS=Bos taurus OX=9913 GN=PPARG PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 5.866e-23
Identity = 115/424 (27.12%), Postives = 192/424 (45.28%), Query Frame = 3

Query:  798 IPCRVCGGKSSGFHFGALTCEGCKGFFRRTESTKQHLACITGNNNCCLTGSSSRNLCKSCRFNRCLGVGMSKKGSRIGRQPNAVKFHCVLEIMQRTCDQYDGASESANDNSKRKSVFHRAYRKVCQQSQKNLIRCSQNHFDKLKNDLSIFDTKDIFYSNEE-KFIFESSLKEATRIIEISKANLQDLSSRQFSK-KYLTLNDLWNYMMNNFDVHSAMIVQFVKAIPGFNKFELKSRRSLVQDAMYPIMLLKLAQDYKPD---VDEYNYFDFSLIDREVILNNFQSFKRITDHLLSISRMVHSLQLSSYPISLLCVTELMKNYHLLSDEEEGKRILNQAKSLLWLFLENNEVEDNTIGNLTKQTEMLNLHPKNYQKYIKIFEEMPKLLSEMNSEHLKIIQELK------YLHPELLFPELYIDMF 2036
            I CRVCG K+SGFH+G   CEGCKGFFRRT   K  L     + NC +    SRN C+ CRF +CL VGMS    R GR P A K   + EI     DQ +   ESA+  +  K ++    +       K     +    D  K+   I+D   +    ++ KF   S L+E ++ + I          R F   ++ ++  +              I ++ K IPGF   +L  + +L++  ++ I+   LA     D   + E   F    + RE + +  + F    +     +   ++L+L    +++           +LS +  G  +LN  K +        +++DN +  L  Q + LN HP++ Q + K+ ++M   L ++ +EH++++Q +K       LHP  L  E+Y D++
Sbjct:  137 IECRVCGDKASGFHYGVHACEGCKGFFRRTIRLK--LIYDRCDLNCRI-HKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAEKEKLLAEI-SSDIDQLN--PESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTD--KSPFVIYDMNSLMMGEDKIKFKHISPLQEPSKEVAI----------RIFQGCQFRSVEAVQE------------ITEYAKNIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEGQGF----MTREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAV------IILSGDRPG--LLN-VKPI-------EDIQDNLLQALELQLK-LN-HPESSQLFAKLLQKMTD-LRQIVTEHVQLLQVIKKTETDMSLHP--LLQEIYKDLY 505

HSP 2 Score: 62.3882 bits (150), Expect = 9.405e-9
Identity = 29/69 (42.03%), Postives = 40/69 (57.97%), Query Frame = 3

Query:  546 CQVCRESAAGFHHGAYVCEACKKFFMRHNLNSTKFTIPCPTGGQCAQLKTGRIKCQSCRFKKCVSIGMA 752
            C+VC + A+GFH+G + CE CK FF R  +        C     C   K  R KCQ CRF+KC+++GM+
Sbjct:  139 CRVCGDKASGFHYGVHACEGCKGFF-RRTIRLKLIYDRCDLN--CRIHKKSRNKCQYCRFQKCLAVGMS 204

[Close]

BLAST of Nuclear receptor 2DBD gamma vs. UniProt/SwissProt
Match: sp|P15370|EGON_DROME (Protein embryonic gonad OS=Drosophila melanogaster OX=7227 GN=eg PE=2 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 2.286e-21
Identity = 49/96 (51.04%), Postives = 63/96 (65.62%), Query Frame = 3

Query:  804 CRVCGGKSSGFHFGALTCEGCKGFFRRTESTKQHLACITG--NNNCCLTGSSSRNLCKSCRFNRCLGVGMSKKGSRIGRQPNAVKFHCVLEIMQRT 1085
            C+VCG  ++GFHFGA TCEGCK FF RT +   ++A I G  +N  C+    +R  CK+CR  +CL VGMSK GSR GR+ N  K HC+L+  Q T
Sbjct:    5 CKVCGEPAAGFHFGAFTCEGCKSFFGRTYN---NIAAIAGCKHNGDCVINKKNRTACKACRLRKCLLVGMSKSGSRYGRRSNWFKIHCLLQEQQTT 97

HSP 2 Score: 72.4034 bits (176), Expect = 4.160e-12
Identity = 33/71 (46.48%), Postives = 42/71 (59.15%), Query Frame = 3

Query:  540 QLCQVCRESAAGFHHGAYVCEACKKFFMRHNLNSTKFTIPCPTGGQCAQLKTGRIKCQSCRFKKCVSIGMA 752
            QLC+VC E AAGFH GA+ CE CK FF R   N+      C   G C   K  R  C++CR +KC+ +GM+
Sbjct:    3 QLCKVCGEPAAGFHFGAFTCEGCKSFFGR-TYNNIAAIAGCKHNGDCVINKKNRTACKACRLRKCLLVGMS 72

[Close]

BLAST of Nuclear receptor 2DBD gamma vs. UniProt/SwissProt
Match: sp|P31396|HR3_DROME (Probable nuclear hormone receptor HR3 OS=Drosophila melanogaster OX=7227 GN=Hr3 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 5.514e-21
Identity = 48/111 (43.24%), Postives = 67/111 (60.36%), Query Frame = 3

Query:  750 ALQNPNNGNSKFDISKIPCRVCGGKSSGFHFGALTCEGCKGFFRRTESTKQHLACITGNNNCCLTGSSSRNLCKSCRFNRCLGVGMSKKGSRIGRQP--------NAVKFH 1058
            A QN ++G+ K  I  IPC+VCG KSSG H+G +TCEGCKGFFRR++S+  +  C    N  C+    +RN C+ CR  +CL +GMS+   + GR          + V+FH
Sbjct:   33 AGQNNSSGSIKAQIEIIPCKVCGDKSSGVHYGVITCEGCKGFFRRSQSSVVNYQC--PRNKQCVVDRVNRNRCQYCRLQKCLKLGMSRDAVKFGRMSKKQREKVEDEVRFH 141

HSP 2 Score: 65.0846 bits (157), Expect = 1.094e-9
Identity = 27/69 (39.13%), Postives = 39/69 (56.52%), Query Frame = 3

Query:  546 CQVCRESAAGFHHGAYVCEACKKFFMRHNLNSTKFTIPCPTGGQCAQLKTGRIKCQSCRFKKCVSIGMA 752
            C+VC + ++G H+G   CE CK FF R    S+     CP   QC   +  R +CQ CR +KC+ +GM+
Sbjct:   51 CKVCGDKSSGVHYGVITCEGCKGFFRRS--QSSVVNYQCPRNKQCVVDRVNRNRCQYCRLQKCLKLGMS 117

[Close]

BLAST of Nuclear receptor 2DBD gamma vs. UniProt/SwissProt
Match: sp|P37230|PPARA_RAT (Peroxisome proliferator-activated receptor alpha OS=Rattus norvegicus OX=10116 GN=Ppara PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.669e-20
Identity = 90/320 (28.12%), Postives = 139/320 (43.44%), Query Frame = 3

Query:  798 IPCRVCGGKSSGFHFGALTCEGCKGFFRRTESTKQHLACITGNNNCCLTGSSSRNLCKSCRFNRCLGVGMSKKGSRIGRQPNAVKFHCVLEIMQRTCDQYDGASESANDNSKRKSVFHRAYRKVCQQSQKNLIRCSQNHFDKLKNDLSIFDTKDIFYSNEEKFIFESSLKEATRIIEISKANLQDLSSRQFSKKYLTLNDLWNYMMNN------------FDVHSAM-IVQFVKAIPGFNKFELKSRRSLVQDAMYPIMLLKLAQDYKPDVDEYNYFDFSLIDREVILNNFQSFKRITDHLLSISRMVHSLQLSSYPISL 1718
            I CR+CG K+SG+H+G   CEGCKGFFRRT   K  LA    + +C +    +RN C+ CRF++CL VGMS    R GR P + K     EI+  TC+     SE+A+  S  K + H AY K               + +K+K  + +        SN   F+                  + D+ +   ++K L    + N + N               V +   + +F KAIPGF   +L  + +L++  +Y  +   L+     D     Y +   I RE + N  + F  I +     +   ++L+L    ISL
Sbjct:  100 IECRICGDKASGYHYGVHACEGCKGFFRRTIRLK--LAYDKCDRSCKIQ-KKNRNKCQYCRFHKCLSVGMSHNAIRFGRMPRSEKAKLKAEIL--TCEHDLKDSETADLKSLAKRI-HEAYLK-------------NFNMNKVKARVILAGKT----SNNPPFV------------------IHDMETLCMAEKTLVAKMVANGVENKEAEVRFFHCCQCMSVETVTELTEFAKAIPGFANLDLNDQVTLLKYGVYEAIFTMLSSLMNKDGMLIAYGN-GFITREFLKNLRKPFCDIMEPKFDFAMKFNALELDDSDISL 377

HSP 2 Score: 57.7658 bits (138), Expect = 2.255e-7
Identity = 27/69 (39.13%), Postives = 38/69 (55.07%), Query Frame = 3

Query:  546 CQVCRESAAGFHHGAYVCEACKKFFMRHNLNSTKFTIPCPTGGQCAQLKTGRIKCQSCRFKKCVSIGMA 752
            C++C + A+G+H+G + CE CK FF R       +         C   K  R KCQ CRF KC+S+GM+
Sbjct:  102 CRICGDKASGYHYGVHACEGCKGFFRRTIRLKLAYD---KCDRSCKIQKKNRNKCQYCRFHKCLSVGMS 167

[Close]

BLAST of Nuclear receptor 2DBD gamma vs. UniProt/SwissProt
Match: sp|Q08882|HR3_MANSE (Probable nuclear hormone receptor HR3 OS=Manduca sexta OX=7130 GN=HR3 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.749e-20
Identity = 91/344 (26.45%), Postives = 148/344 (43.02%), Query Frame = 3

Query:  744 GMALQNPNNGNSKFDISKIPCRVCGGKSSGFHFGALTCEGCKGFFRRTESTKQHLACITGNNNCCLTGSSSRNLCKSCRFNRCLGVGMSKKGSRIGRQP--------NAVKFHCVLEIMQRTCDQYDGASESANDNSKRKSV----FHRAYRKVCQQSQKNLIRCSQNHFDKLKNDLS----------IFDTKDIFYSNEEKFIFESSLKEATRIIE----ISKANLQDLSSRQ-------------FSKKY----------LTLNDLWNYMMNNFDVHSAM---IVQFVKAIPGFNKFELKSRRSLVQDAMYPIMLLKLAQDYKPDVDEYNYFDFSLIDREVI 1619
            GM +      + +  I  IPC+VCG KSSG H+G +TCEGCKGFFRR++ST  +  C    N  C+    +RN C+ CR  +CL +GMS+   + GR          + V++H   +   R   Q D A +S  D  ++       FH  Y      +         N    L +++S           +D  D   + E K   +    +A  I +    ISK  ++ L+ R              FSK            +T  ++W   ++  D  +AM   I++F K IPGF K     +  L++   + + +++L++    + ++  Y D  L  RE +
Sbjct:   84 GMFMDKKAANSIRAQIEIIPCKVCGDKSSGVHYGVITCEGCKGFFRRSQSTVVNYQC--PRNKACVVDRVNRNRCQYCRLQKCLKLGMSRDAVKFGRMSKKQREKVEDEVRYH---KAQMRA--QNDAAPDSVYDAQQQTPSSSDQFHGHYNGYPGYASPLSSYGYNNAGPPLTSNMSSIQAQPQAQQPYDYADSTTTYEPK---QPGYLDADFIGQVEGDISKVLVKSLAERHANTNPKLEYINEMFSKPQDVSKLLFYNSMTYEEMW---LDCADKLTAMIQNIIEFAKLIPGFMKLTQDDQILLLKSGSFELAIVRLSRLIDVNREQVLYGDVVLPIRECV 414

HSP 2 Score: 64.3142 bits (155), Expect = 2.531e-9
Identity = 37/116 (31.90%), Postives = 53/116 (45.69%), Query Frame = 3

Query:  426 DISSAVEYKDETSEIPEQHLTFTSPESAFY-------DYQQKMESQLCQVCRESAAGFHHGAYVCEACKKFFMRHNLNSTKFTIPCPTGGQCAQLKTGRIKCQSCRFKKCVSIGMA 752
            DI+S     D TS  P        P S  +         + ++E   C+VC + ++G H+G   CE CK FF R    ST     CP    C   +  R +CQ CR +KC+ +GM+
Sbjct:   58 DITSG-SVADSTSPPPGSSEGMFGPISGMFMDKKAANSIRAQIEIIPCKVCGDKSSGVHYGVITCEGCKGFFRRS--QSTVVNYQCPRNKACVVDRVNRNRCQYCRLQKCLKLGMS 170

[Close]

BLAST of Nuclear receptor 2DBD gamma vs. TrEMBL
Match: A0A564Y0P1 (Uncharacterized protein (Fragment) OS=Hymenolepis diminuta OX=6216 GN=WMSIL1_LOCUS1241 PE=3 SV=1)

HSP 1 Score: 301.212 bits (770), Expect = 5.546e-88
Identity = 138/219 (63.01%), Postives = 164/219 (74.89%), Query Frame = 3

Query:  489 FTSPESAFYDYQQKMESQLCQVCRESAAGFHHGAYVCEACKKFFMRHNLNSTKFTIPCPTGGQCAQLKTGRIKCQSCRFKKCVSIGMALQNPNNGNSKFDISKIPCRVCGGKSSGFHFGALTCEGCKGFFRRTESTKQHLACITGNNNCCLTGSSSRNLCKSCRFNRCLGVGMSKKGSRIGRQPNAVKFHCVLEIMQRTCDQYDGASESANDNSKRKSV 1145
            FTSPESAFY YQ +ME QLCQ+C E AAGFHHGAYVCEACKKFFMRH+L + + T  CP+GG C  +K  R +CQ CR+KKC+ +GM+L++  +   + DIS IPCRVCGG+SSGFHFGALTCEGCKGFFRRTE T   L C+ G +NC +T   SRN+CKSCRF RCL  GMSK+GSRIGRQPNAVKFHC +EI Q   +    AS+  +   K  SV
Sbjct:  159 FTSPESAFYQYQNRMEGQLCQICGELAAGFHHGAYVCEACKKFFMRHSLANGRSTTTCPSGGNCVIVKNSRGRCQQCRYKKCLEVGMSLKD-MDAQGELDISNIPCRVCGGRSSGFHFGALTCEGCKGFFRRTEETASRLVCVGGKDNCTIT-PRSRNVCKSCRFRRCLRAGMSKRGSRIGRQPNAVKFHCAIEIRQMQDNGQPLASDFGHPPRKHSSV 375

HSP 2 Score: 103.219 bits (256), Expect = 6.628e-19
Identity = 44/122 (36.07%), Postives = 75/122 (61.48%), Query Frame = 3

Query: 1398 LWNYMMNNFDVHSAMIVQFVKAIPGFNKFELKSRRSLVQDAMYPIMLLKLAQDYKPDVDEYNYFDFSLIDREVILNNFQSFKRITDHLLSISRMVHSLQLSSYPISLLCVTELMKNYHLLSD 1763
            +W+++MN+F +HS  +VQF K IPGFN+  L +R  LV+ ++Y  +LL L++DY    D YN+ DFS  +R++IL +F  + R+ +HL    R    L L+       C   +++ Y++L++
Sbjct:  545 VWDHVMNHFHLHSQQVVQFAKLIPGFNQMSLSARGHLVRASLYSEVLLMLSRDYDVTEDRYNFLDFSPAERDIILRHFPIYNRVVEHLKISGRFFQQLNLTHTEFVYACAIGILRQYYILAN 666

[Close]

BLAST of Nuclear receptor 2DBD gamma vs. TrEMBL
Match: A0A158QEI5 (Uncharacterized protein OS=Hymenolepis diminuta OX=6216 GN=HDID_LOCUS7453 PE=3 SV=1)

HSP 1 Score: 304.679 bits (779), Expect = 8.071e-88
Identity = 138/219 (63.01%), Postives = 164/219 (74.89%), Query Frame = 3

Query:  489 FTSPESAFYDYQQKMESQLCQVCRESAAGFHHGAYVCEACKKFFMRHNLNSTKFTIPCPTGGQCAQLKTGRIKCQSCRFKKCVSIGMALQNPNNGNSKFDISKIPCRVCGGKSSGFHFGALTCEGCKGFFRRTESTKQHLACITGNNNCCLTGSSSRNLCKSCRFNRCLGVGMSKKGSRIGRQPNAVKFHCVLEIMQRTCDQYDGASESANDNSKRKSV 1145
            FTSPESAFY YQ +ME QLCQ+C E AAGFHHGAYVCEACKKFFMRH+L + + T  CP+GG C  +K  R +CQ CR+KKC+ +GM+L++  +   + DIS IPCRVCGG+SSGFHFGALTCEGCKGFFRRTE T   L C+ G +NC +T   SRN+CKSCRF RCL  GMSK+GSRIGRQPNAVKFHC +EI Q   +    AS+  +   K  SV
Sbjct:  159 FTSPESAFYQYQNRMEGQLCQICGELAAGFHHGAYVCEACKKFFMRHSLANGRSTTTCPSGGNCVIVKNSRGRCQQCRYKKCLEVGMSLKD-MDAQGELDISNIPCRVCGGRSSGFHFGALTCEGCKGFFRRTEETASRLVCVGGKDNCTIT-PRSRNVCKSCRFRRCLRAGMSKRGSRIGRQPNAVKFHCAIEIRQMQDNGQPLASDFGHPPRKHSSV 375

HSP 2 Score: 120.168 bits (300), Expect = 3.526e-24
Identity = 64/217 (29.49%), Postives = 114/217 (52.53%), Query Frame = 3

Query: 1398 LWNYMMNNFDVHSAMIVQFVKAIPGFNKFELKSRRSLVQDAMYPIMLLKLAQDYKPDVDEYNYFDFSLIDREVILNNFQSFKRITDHLLSISRMVHSLQLSSYPISLLCVTELMKNYHLLSDEEEGKRILNQAKSLLWLFLENNEVEDNTIGNLTKQTEMLNLHPKNYQKYIKIFEEMPKLLSEMNSEHLKIIQELKYLHPELLFPELYIDMFNIQD 2048
            +W+++MN+F +HS  +VQF K IPGFN+  L +R  LV+ ++Y  +LL L++DY    D YN+ DFS  +R++IL +F  + R+ +HL    R    L L+       C   +++ Y++L++          A+              + +  +  QTE   L    + +     E + ++LS M+ E+  I Q+L+   P+L +P+LY +M+ I +
Sbjct:  545 VWDHVMNHFHLHSQQVVQFAKLIPGFNQMSLSARGHLVRASLYSEVLLMLSRDYDVTEDRYNFLDFSPAERDIILRHFPIYNRVVEHLKISGRFFQQLNLTHTEFVYACAIGILRQYYILANP-----AYTDARK------LLLLARHSLLATMRSQTESQELVDHKWNR----LEALSEMLSSMSKEYRDIAQQLQRSRPDLRYPDLYAEMYEINE 746

[Close]

BLAST of Nuclear receptor 2DBD gamma vs. TrEMBL
Match: A0A5K3ENQ7 (Uncharacterized protein OS=Mesocestoides corti OX=53468 PE=4 SV=1)

HSP 1 Score: 299.286 bits (765), Expect = 1.219e-87
Identity = 133/197 (67.51%), Postives = 157/197 (79.70%), Query Frame = 3

Query:  489 FTSPESAFYDYQQKMESQLCQVCRESAAGFHHGAYVCEACKKFFMRHNLNSTKFTIPCPTGGQCAQLKTGRIKCQSCRFKKCVSIGMALQNPNNGNSKFDISKIPCRVCGGKSSGFHFGALTCEGCKGFFRRTESTKQHLACITGNNNCCLTGSSSRNLCKSCRFNRCLGVGMSKKGSRIGRQPNAVKFHCVLEIMQ 1079
            FTSPESAFY YQ +ME QLCQ+C E AAGFHHGAYVCEACKKFFMRH+L + + T  CP+GG+C   KT R +CQ CR+KKC+ +GM+L++  +G  + DIS IPCRVCGG+SSGFHFGALTCEGCKGFFRRTE     L C+ G +NC +T   SRN+CK+CRF RCL  GMSK+GSRIGRQPNAVKFHC +EI Q
Sbjct:  150 FTSPESAFYQYQNRMEGQLCQICGELAAGFHHGAYVCEACKKFFMRHSLANGRATTTCPSGGKCVIAKTSRGRCQQCRYKKCLEVGMSLKD-MDGQGELDISNIPCRVCGGRSSGFHFGALTCEGCKGFFRRTEEAAGRLVCVGGKDNCTIT-PRSRNVCKACRFRRCLRAGMSKRGSRIGRQPNAVKFHCAIEIRQ 344

HSP 2 Score: 121.324 bits (303), Expect = 1.018e-24
Identity = 51/116 (43.97%), Postives = 78/116 (67.24%), Query Frame = 3

Query: 1398 LWNYMMNNFDVHSAMIVQFVKAIPGFNKFELKSRRSLVQDAMYPIMLLKLAQDYKPDVDEYNYFDFSLIDREVILNNFQSFKRITDHLLSISRMVHSLQLSSYPISLLCVTELMKN 1745
            +W ++MN+F +HS  IVQF K IPGFN+  L  R +LV++ MYP+MLL +A+D++P   +YNYFDF+  +R+VIL +F S+ R+ +HL    R    L LS    S +C  E++++
Sbjct:  526 VWGHVMNHFHLHSQQIVQFAKLIPGFNQLSLAGRGNLVREGMYPVMLLLMARDFEPAEGKYNYFDFTPSERDVILRHFPSYNRVVEHLSISGRFFQQLNLSLSEFSFVCAIEILRS 641

[Close]

BLAST of Nuclear receptor 2DBD gamma vs. TrEMBL
Match: A0A5K3ELX8 (Uncharacterized protein OS=Mesocestoides corti OX=53468 PE=4 SV=1)

HSP 1 Score: 302.753 bits (774), Expect = 1.821e-87
Identity = 133/197 (67.51%), Postives = 157/197 (79.70%), Query Frame = 3

Query:  489 FTSPESAFYDYQQKMESQLCQVCRESAAGFHHGAYVCEACKKFFMRHNLNSTKFTIPCPTGGQCAQLKTGRIKCQSCRFKKCVSIGMALQNPNNGNSKFDISKIPCRVCGGKSSGFHFGALTCEGCKGFFRRTESTKQHLACITGNNNCCLTGSSSRNLCKSCRFNRCLGVGMSKKGSRIGRQPNAVKFHCVLEIMQ 1079
            FTSPESAFY YQ +ME QLCQ+C E AAGFHHGAYVCEACKKFFMRH+L + + T  CP+GG+C   KT R +CQ CR+KKC+ +GM+L++  +G  + DIS IPCRVCGG+SSGFHFGALTCEGCKGFFRRTE     L C+ G +NC +T   SRN+CK+CRF RCL  GMSK+GSRIGRQPNAVKFHC +EI Q
Sbjct:  150 FTSPESAFYQYQNRMEGQLCQICGELAAGFHHGAYVCEACKKFFMRHSLANGRATTTCPSGGKCVIAKTSRGRCQQCRYKKCLEVGMSLKD-MDGQGELDISNIPCRVCGGRSSGFHFGALTCEGCKGFFRRTEEAAGRLVCVGGKDNCTIT-PRSRNVCKACRFRRCLRAGMSKRGSRIGRQPNAVKFHCAIEIRQ 344

HSP 2 Score: 155.606 bits (392), Expect = 1.554e-35
Identity = 77/221 (34.84%), Postives = 133/221 (60.18%), Query Frame = 3

Query: 1398 LWNYMMNNFDVHSAMIVQFVKAIPGFNKFELKSRRSLVQDAMYPIMLLKLAQDYKPDVDEYNYFDFSLIDREVILNNFQSFKRITDHLLSISRMVHSLQLSSYPISLLCVTELMKNYHLLSDEE--EGKRILNQAK-SLLWLFLENNEVEDNTIGNLTKQTEMLNLHPKNYQKYIKIFEEMPKLLSEMNSEHLKIIQELKYLHPELLFPELYIDMFNIQDP 2051
            +W ++MN+F +HS  IVQF K IPGFN+  L  R +LV++ MYP+MLL +A+D++P   +YNYFDF+  +R+VIL +F S+ R+ +HL    R    L LS    S +C  E+++N+ +L+ +   + +++L  AK SLL      N+ +           E+++       K+ ++ E + ++L+ M+ EH  I  ++K   P+L +P+LY++M+ + DP
Sbjct:  526 VWGHVMNHFHLHSQQIVQFAKLIPGFNQLSLAGRGNLVREGMYPVMLLLMARDFEPAEGKYNYFDFTPSERDVILRHFPSYNRVVEHLSISGRFFQQLNLSLSEFSFVCAIEILRNFQILTGQSYTDARKLLILAKHSLLAGMRSQNQPQ-----------EVVD------HKWTRL-ESLSEMLTSMSKEHQDIAIQMKRTRPDLGYPDLYVEMYQLTDP 728

[Close]

BLAST of Nuclear receptor 2DBD gamma vs. TrEMBL
Match: A0A068Y2L3 (Nuclear receptor 2DBD gamma OS=Echinococcus multilocularis OX=6211 GN=EmuJ_000379600 PE=3 SV=1)

HSP 1 Score: 303.523 bits (776), Expect = 1.887e-87
Identity = 156/334 (46.71%), Postives = 202/334 (60.48%), Query Frame = 3

Query:  102 FNELKSQTSSWLFTNQIPDQRKYENLKFPWFLKDYPITMNMDEYDY----AHHLNTWNTDWNYIDKFKTLD-SSESFEPDNIEMIANHNKFNSLSDVKCENLVASMKDSTEFSDISSAVEYKDETS---EIPEQHLTFTSPESAFYDYQQKMESQLCQVCRESAAGFHHGAYVCEACKKFFMRHNLNSTKFTIPCPTGGQCAQLKTGRIKCQSCRFKKCVSIGMALQNPNNGNSKFDISKIPCRVCGGKSSGFHFGALTCEGCKGFFRRTESTKQHLACITGNNNCCLTGSSSRNLCKSCRFNRCLGVGMSKKGSRIGRQPNAVKFHCVLEIMQ 1079
            F  L +  +S       PD      L   + L   P+T+      +    A H    +T  N  + F  +D   E + P   +  ++   FN         L    + S + +D+ SA +    ++    +P     FTSPESAFY YQ +ME QLCQ+C E AAGFHHGAYVCEACKKFFMRH+L + + T  CP+GG C   K+ R +CQ CR+KKC+ +GM+L++  +   + DIS IPCRVCGG+SSGFHFGALTCEGCKGFFRRTE +   L C+ G +NC +T   SRN+CK+CRF RCL  GMSK+GSRIGRQPNAVKFHC +EI Q
Sbjct:   32 FGGLSAHWASGGMGVDEPDSSSTSTLHPTYALLSAPVTIPNQSPQFFPKLADHQLATSTPANGNNYFTAMDVGGEYYSP---QPPSSSTAFN--------QLPPQTEQSRQLTDLDSANKGSSRSTGGVSLP----GFTSPESAFYQYQNRMEGQLCQICGELAAGFHHGAYVCEACKKFFMRHSLANGRSTTTCPSGGNCVIAKSSRGRCQQCRYKKCLEVGMSLKD-MDAQGELDISNIPCRVCGGRSSGFHFGALTCEGCKGFFRRTEESASRLVCVGGKDNCTIT-PRSRNVCKACRFRRCLRAGMSKRGSRIGRQPNAVKFHCAIEIRQ 348

HSP 2 Score: 122.479 bits (306), Expect = 7.141e-25
Identity = 63/219 (28.77%), Postives = 117/219 (53.42%), Query Frame = 3

Query: 1392 NDLWNYMMNNFDVHSAMIVQFVKAIPGFNKFELKSRRSLVQDAMYPIMLLKLAQDYKPDVDEYNYFDFSLIDREVILNNFQSFKRITDHLLSISRMVHSLQLSSYPISLLCVTELMKNYHLLSDEEEGKRILNQAKSLLWLFLENNEVEDNTIGNLTKQTEMLNLHPKNYQKYIKIFEEMPKLLSEMNSEHLKIIQELKYLHPELLFPELYIDMFNIQD 2048
            + +W+++MN+F +HS  +VQF K IPGFN+  L +R  LV+ ++Y  +LL L++DY    D YN+ DFS  +R+++L +F  + R+ +HL    R    L L+      +C   +++ Y++L++          A+              + +  +  Q E   L    + +     E M ++LS M+ E+ +I Q+L+   P+L +P+LY++M+ I +
Sbjct:  543 HQVWDHVMNHFHLHSQQVVQFAKLIPGFNQMSLSARGHLVRASLYSEVLLMLSRDYDAAEDRYNFLDFSPTERDIVLRHFPIYNRVVEHLRISGRFFQQLNLTHTEFVYVCAIGILRYYYILANPA-----YTDARK------LLLLARHSLLATMRSQNESQELVDHKWSR----LEAMSEMLSSMSREYREIAQQLQRSRPDLRYPDLYVEMYEIGE 746

[Close]

BLAST of Nuclear receptor 2DBD gamma vs. Ensembl Cavefish
Match: pparaa (peroxisome proliferator-activated receptor alpha [Source:NCBI gene;Acc:103027723])

HSP 1 Score: 102.449 bits (254), Expect = 1.669e-22
Identity = 104/423 (24.59%), Postives = 181/423 (42.79%), Query Frame = 3

Query:  798 IPCRVCGGKSSGFHFGALTCEGCKGFFRRTESTKQHLACITGNNNCCLTGSSSRNLCKSCRFNRCLGVGMSKKGSRIGRQPNAVKFHCVLEIMQRTCDQYDGASESANDNSKRKSVFHRAYRKVCQQSQKNLIRCSQNHFDKLKNDLSIFDTKDIFYSNEEKFIFESSLKEATRIIEISKANLQDLSSRQFSK-KYLTLNDLWNYMMNNFDVHSAMIVQFVKAIPGFNKFELKSRRSLVQDAMYPIMLLKLAQDYKPD---VDEYNYFDFSLIDREVILNNFQSFKRITDHLLSISRMVHSLQLSSYPISLLCVTEL-MKNYHLLSDEEEGKRILNQAKSLLWLFLENNEVEDNTIGNLTKQTEMLNLHPKNYQKYIKIFEEMPKLLSEMNSEHLKIIQELK-----YLHPELLFPELYIDMF 2036
            + CRVC  ++SGFH+G   CEGCKGFFRRT   K        N   C     +RN C+ CRF++CL VGMS    R GR P + K    L    +T +  DG ++ A+  S  + + H AY K  Q S     +     F   K   S F   D+    + + I  + +    +   +S    ++  S  F   +Y ++  +              + +F KA+PGF   ++  + +L++  ++      L+     D   V     F    I RE + +  + F  + +     +   ++L+L    ++L   T +   +   L++  + + I     + L L L+ N                   HP N   + K+ +++   L E+ +EH ++++++K     +LHP  L  E+Y DM+
Sbjct:   97 LECRVCADRASGFHYGVHACEGCKGFFRRTIRLKLEYDKCERN---CKIQKKNRNKCQYCRFHKCLAVGMSHNAIRFGRMPRSEKMK--LRAKLQTGEIEDGETQLADLKSLARQI-HEAYLKNFQMS-----KAKARVFLAGKTSTSPFVIHDLETLQQAQSILAAQMLVDEKEELVSGVQERETESHLFRCCQYTSVETVTQ------------LTEFAKAVPGFASLDINDQVTLLKYGVHEAFFTLLSSYMNKDGLLVASGGGF----ITREFLKSLRRPFSDMLEPKFQFAIRFNALELDDSDLALFVATIICCGDRPGLANVSDIECIQESIVNALRLHLQAN-------------------HPDNTMLFPKLLQKLAD-LRELVTEHAQLVEDIKNTQDSFLHP--LLQEIYKDMY 470

HSP 2 Score: 60.4622 bits (145), Expect = 4.387e-9
Identity = 29/69 (42.03%), Postives = 40/69 (57.97%), Query Frame = 3

Query:  546 CQVCRESAAGFHHGAYVCEACKKFFMRHNLNSTKFTIPCPTGGQCAQLKTGRIKCQSCRFKKCVSIGMA 752
            C+VC + A+GFH+G + CE CK FF R      ++   C     C   K  R KCQ CRF KC+++GM+
Sbjct:   99 CRVCADRASGFHYGVHACEGCKGFFRRTIRLKLEYD-KCERN--CKIQKKNRNKCQYCRFHKCLAVGMS 164

[Close]

BLAST of Nuclear receptor 2DBD gamma vs. Ensembl Cavefish
Match: roraa (nuclear receptor ROR-alpha [Source:NCBI gene;Acc:103045127])

HSP 1 Score: 96.2857 bits (238), Expect = 1.403e-20
Identity = 41/82 (50.00%), Postives = 54/82 (65.85%), Query Frame = 3

Query:  789 ISKIPCRVCGGKSSGFHFGALTCEGCKGFFRRTESTKQHLACITGNNNCCLTGSSSRNLCKSCRFNRCLGVGMSKKGSRIGR 1034
            I  IPC++CG KSSG H+G +TCEGCKGFFRR++ +    +C    N  CL   +SRN C+ CR  +CL VGMS+   + GR
Sbjct:   15 IEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNAAYSCPRQKN--CLIDRTSRNRCQHCRLQKCLAVGMSRDAVKFGR 94

HSP 2 Score: 63.1586 bits (152), Expect = 4.759e-10
Identity = 26/75 (34.67%), Postives = 45/75 (60.00%), Query Frame = 3

Query:  528 KMESQLCQVCRESAAGFHHGAYVCEACKKFFMRHNLNSTKFTIPCPTGGQCAQLKTGRIKCQSCRFKKCVSIGMA 752
            ++E   C++C + ++G H+G   CE CK FF R   ++  ++  CP    C   +T R +CQ CR +KC+++GM+
Sbjct:   14 QIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNAAYS--CPRQKNCLIDRTSRNRCQHCRLQKCLAVGMS 86

[Close]

BLAST of Nuclear receptor 2DBD gamma vs. Ensembl Cavefish
Match: roraa (nuclear receptor ROR-alpha [Source:NCBI gene;Acc:103045127])

HSP 1 Score: 96.2857 bits (238), Expect = 1.613e-20
Identity = 41/82 (50.00%), Postives = 54/82 (65.85%), Query Frame = 3

Query:  789 ISKIPCRVCGGKSSGFHFGALTCEGCKGFFRRTESTKQHLACITGNNNCCLTGSSSRNLCKSCRFNRCLGVGMSKKGSRIGR 1034
            I  IPC++CG KSSG H+G +TCEGCKGFFRR++ +    +C    N  CL   +SRN C+ CR  +CL VGMS+   + GR
Sbjct:   46 IEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNAAYSCPRQKN--CLIDRTSRNRCQHCRLQKCLAVGMSRDAVKFGR 125

HSP 2 Score: 63.5438 bits (153), Expect = 4.964e-10
Identity = 26/75 (34.67%), Postives = 45/75 (60.00%), Query Frame = 3

Query:  528 KMESQLCQVCRESAAGFHHGAYVCEACKKFFMRHNLNSTKFTIPCPTGGQCAQLKTGRIKCQSCRFKKCVSIGMA 752
            ++E   C++C + ++G H+G   CE CK FF R   ++  ++  CP    C   +T R +CQ CR +KC+++GM+
Sbjct:   45 QIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNAAYS--CPRQKNCLIDRTSRNRCQHCRLQKCLAVGMS 117

[Close]

BLAST of Nuclear receptor 2DBD gamma vs. Ensembl Cavefish
Match: roraa (nuclear receptor ROR-alpha [Source:NCBI gene;Acc:103045127])

HSP 1 Score: 96.2857 bits (238), Expect = 1.770e-20
Identity = 42/85 (49.41%), Postives = 55/85 (64.71%), Query Frame = 3

Query:  780 KFDISKIPCRVCGGKSSGFHFGALTCEGCKGFFRRTESTKQHLACITGNNNCCLTGSSSRNLCKSCRFNRCLGVGMSKKGSRIGR 1034
            K  I  IPC++CG KSSG H+G +TCEGCKGFFRR++ +    +C    N  CL   +SRN C+ CR  +CL VGMS+   + GR
Sbjct:   53 KAQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNAAYSCPRQKN--CLIDRTSRNRCQHCRLQKCLAVGMSRDAVKFGR 135

HSP 2 Score: 67.781 bits (164), Expect = 1.911e-11
Identity = 32/105 (30.48%), Postives = 54/105 (51.43%), Query Frame = 3

Query:  450 KDETSEIPEQHLTFTSPESAFYDYQQKMESQL----CQVCRESAAGFHHGAYVCEACKKFFMRHNLNSTKFTIPCPTGGQCAQLKTGRIKCQSCRFKKCVSIGMA 752
            +   S  P   L +  P    Y     M++Q+    C++C + ++G H+G   CE CK FF R   ++  ++  CP    C   +T R +CQ CR +KC+++GM+
Sbjct:   25 RGRLSLAPRLLLAYGPPSLMMYFVISAMKAQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNAAYS--CPRQKNCLIDRTSRNRCQHCRLQKCLAVGMS 127

[Close]

BLAST of Nuclear receptor 2DBD gamma vs. Ensembl Cavefish
Match: rorcb (nuclear receptor ROR-beta-like [Source:NCBI gene;Acc:103024206])

HSP 1 Score: 94.3597 bits (233), Expect = 6.390e-20
Identity = 39/82 (47.56%), Postives = 53/82 (64.63%), Query Frame = 3

Query:  789 ISKIPCRVCGGKSSGFHFGALTCEGCKGFFRRTESTKQHLACITGNNNCCLTGSSSRNLCKSCRFNRCLGVGMSKKGSRIGR 1034
            I  IPC++CG KSSG H+G +TCEGCKGFFRR++      +C    N  CL   ++RN C+ CR  +CL +GMS+   + GR
Sbjct:    4 IEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNAMYSCSRQRN--CLIDRTNRNRCQHCRLQKCLALGMSRDAVKFGR 83

HSP 2 Score: 61.2326 bits (147), Expect = 2.006e-9
Identity = 26/75 (34.67%), Postives = 44/75 (58.67%), Query Frame = 3

Query:  528 KMESQLCQVCRESAAGFHHGAYVCEACKKFFMRHNLNSTKFTIPCPTGGQCAQLKTGRIKCQSCRFKKCVSIGMA 752
            ++E   C++C + ++G H+G   CE CK FF R   N+  ++  C     C   +T R +CQ CR +KC+++GM+
Sbjct:    3 QIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNAMYS--CSRQRNCLIDRTNRNRCQHCRLQKCLALGMS 75

[Close]

BLAST of Nuclear receptor 2DBD gamma vs. Ensembl Sea Lamprey
Match: rorb (RAR-related orphan receptor B [Source:ZFIN;Acc:ZDB-GENE-061204-2])

HSP 1 Score: 92.0485 bits (227), Expect = 6.906e-20
Identity = 39/82 (47.56%), Postives = 53/82 (64.63%), Query Frame = 3

Query:  789 ISKIPCRVCGGKSSGFHFGALTCEGCKGFFRRTESTKQHLACITGNNNCCLTGSSSRNLCKSCRFNRCLGVGMSKKGSRIGR 1034
            I  IPC++CG KSSG H+G +TCEGCKGFFRR++      +C    N  CL   ++RN C+ CR  +CL +GMS+   + GR
Sbjct:   16 IEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRN--CLIDRTNRNRCQHCRLQKCLALGMSRDAVKFGR 95

HSP 2 Score: 66.6254 bits (161), Expect = 9.996e-12
Identity = 32/89 (35.96%), Postives = 50/89 (56.18%), Query Frame = 3

Query:  486 TFTSPESAFYDYQQKMESQLCQVCRESAAGFHHGAYVCEACKKFFMRHNLNSTKFTIPCPTGGQCAQLKTGRIKCQSCRFKKCVSIGMA 752
            T TS E A      ++E   C++C + ++G H+G   CE CK FF R   N+  ++  CP    C   +T R +CQ CR +KC+++GM+
Sbjct:    1 TCTSCEYAGLCVSAQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYS--CPRQRNCLIDRTNRNRCQHCRLQKCLALGMS 87

[Close]

BLAST of Nuclear receptor 2DBD gamma vs. Ensembl Sea Lamprey
Match: nr1d2a (nuclear receptor subfamily 1, group D, member 2a [Source:ZFIN;Acc:ZDB-GENE-040504-1])

HSP 1 Score: 84.3445 bits (207), Expect = 3.534e-17
Identity = 41/91 (45.05%), Postives = 55/91 (60.44%), Query Frame = 3

Query:  804 CRVCGGKSSGFHFGALTCEGCKGFFRRT-ESTKQHLACITGNNNCCLTGSSSRNLCKSCRFNRCLGVGMSKKGSRIGRQPNAVKFHCVLEI 1073
            C+VCG  +SGFH+G   CEGCKGFFRR+ +   ++  C+   N  C    ++RN C+ CRF +CL VGMSK   R GR P   K   + E+
Sbjct:  122 CKVCGDAASGFHYGVHACEGCKGFFRRSIQQNIKYKPCL--KNETCPIVRANRNRCQHCRFKKCLSVGMSKDAVRFGRIPKREKLRLMEEV 210

HSP 2 Score: 73.559 bits (179), Expect = 8.646e-14
Identity = 32/70 (45.71%), Postives = 46/70 (65.71%), Query Frame = 3

Query:  543 LCQVCRESAAGFHHGAYVCEACKKFFMRHNLNSTKFTIPCPTGGQCAQLKTGRIKCQSCRFKKCVSIGMA 752
            LC+VC ++A+GFH+G + CE CK FF R    + K+  PC     C  ++  R +CQ CRFKKC+S+GM+
Sbjct:  121 LCKVCGDAASGFHYGVHACEGCKGFFRRSIQQNIKYK-PCLKNETCPIVRANRNRCQHCRFKKCLSVGMS 189

[Close]

BLAST of Nuclear receptor 2DBD gamma vs. Ensembl Sea Lamprey
Match: thrb (thyroid hormone receptor beta [Source:NCBI gene;Acc:30607])

HSP 1 Score: 80.4925 bits (197), Expect = 2.566e-16
Identity = 33/69 (47.83%), Postives = 44/69 (63.77%), Query Frame = 3

Query:  801 PCRVCGGKSSGFHFGALTCEGCKGFFRRTESTKQHLACITGNNNCCLTGSSSRNLCKSCRFNRCLGVGM 1007
            PC VCG K++G+H+  +TCEGCKGFFRRT     H+  +   +  C     +RN C+ CRF +CL VGM
Sbjct:   11 PCAVCGDKATGYHYHCITCEGCKGFFRRTIQKSLHVMYVCKFSETCTVDRINRNQCQECRFKKCLAVGM 79

HSP 2 Score: 63.929 bits (154), Expect = 5.637e-11
Identity = 29/74 (39.19%), Postives = 38/74 (51.35%), Query Frame = 3

Query:  531 MESQLCQVCRESAAGFHHGAYVCEACKKFFMRHNLNSTKFTIPCPTGGQCAQLKTGRIKCQSCRFKKCVSIGMA 752
            +E Q C VC + A G+H+    CE CK FF R    S      C     C   +  R +CQ CRFKKC+++GM 
Sbjct:    7 LEGQPCAVCGDKATGYHYHCITCEGCKGFFRRTIQKSLHVMYVCKFSETCTVDRINRNQCQECRFKKCLAVGMV 80

[Close]

BLAST of Nuclear receptor 2DBD gamma vs. Ensembl Sea Lamprey
Match: thrb (thyroid hormone receptor beta [Source:NCBI gene;Acc:30607])

HSP 1 Score: 77.411 bits (189), Expect = 2.080e-15
Identity = 31/70 (44.29%), Postives = 44/70 (62.86%), Query Frame = 3

Query:  801 PCRVCGGKSSGFHFGALTCEGCKGFFRRTESTKQHLACITGNNNCCLTGSSSRNLCKSCRFNRCLGVGMS 1010
            PC VCG K++G+H+  +TCEGCKGFFRRT     H +        C+    +RN C+ CR+ +C+ VGM+
Sbjct:   39 PCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYACKYEGSCIIDRITRNQCQECRYQKCIAVGMA 108

HSP 2 Score: 60.077 bits (144), Expect = 8.464e-10
Identity = 26/69 (37.68%), Postives = 38/69 (55.07%), Query Frame = 3

Query:  546 CQVCRESAAGFHHGAYVCEACKKFFMRHNLNSTKFTIPCPTGGQCAQLKTGRIKCQSCRFKKCVSIGMA 752
            C VC + A G+H+    CE CK FF R    +   +  C   G C   +  R +CQ CR++KC+++GMA
Sbjct:   40 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYACKYEGSCIIDRITRNQCQECRYQKCIAVGMA 108

[Close]

BLAST of Nuclear receptor 2DBD gamma vs. Ensembl Sea Lamprey
Match: ENSPMAT00000004045.1 (pep scaffold:Pmarinus_7.0:GL477450:33951:67473:1 gene:ENSPMAG00000003695.1 transcript:ENSPMAT00000004045.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 69.3218 bits (168), Expect = 4.217e-14
Identity = 32/71 (45.07%), Postives = 45/71 (63.38%), Query Frame = 3

Query:  804 CRVCGGKSSGFHFGALTCEGCKGFFRRTESTKQHLACITGNNNCCLTGSSSRNLCKSCRFNRCLGVGMSKK 1016
            C VCG +++G+HF A+TCEGCKGFFRR+        C   +  C +T  + R+ C+SCR  RC  +GM K+
Sbjct:   24 CGVCGDRATGYHFNAMTCEGCKGFFRRSMKRSASFTC-PFDGRCSITKDNRRH-CQSCRLKRCKDIGMMKE 92

HSP 2 Score: 68.5514 bits (166), Expect = 8.925e-14
Identity = 33/70 (47.14%), Postives = 40/70 (57.14%), Query Frame = 3

Query:  540 QLCQVCRESAAGFHHGAYVCEACKKFFMRHNLNSTKFTIPCPTGGQCAQLKTGRIKCQSCRFKKCVSIGM 749
            ++C VC + A G+H  A  CE CK FF R    S  FT  CP  G+C+  K  R  CQSCR K+C  IGM
Sbjct:   22 RICGVCGDRATGYHFNAMTCEGCKGFFRRSMKRSASFT--CPFDGRCSITKDNRRHCQSCRLKRCKDIGM 89

[Close]

BLAST of Nuclear receptor 2DBD gamma vs. Ensembl Nematostella
Match: EDO39982 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S8G8])

HSP 1 Score: 80.1073 bits (196), Expect = 4.017e-16
Identity = 64/252 (25.40%), Postives = 111/252 (44.05%), Query Frame = 3

Query:  804 CRVCGGKSSGFHFGALTCEGCKGFFRRTESTKQHLACITGNNNCCLTGSSSRNLCKSCRFNRCLGVGMSKKGSRIGRQPNAVKFHCVLEIMQRTCDQYDGASESANDNSKRKSVFHRAYRKVCQQSQKNLIRCSQNHFDKLKNDLSIFDTKDIFYSNEEK---FIFESSLKEATRIIEISKANLQDLSSRQFSKKYLTLNDLWNYMMNNFDVHSAMIVQFVKAIPGFNKFELKSRRSLVQDAMYPIMLLKLA 1550
            C VC  K++G+H+G  TCEGCKGFF+RT   +    C  GN +C +    +RN C+ CRF +C+  GM K+  R  R P     H  L+                 D+ ++K       +K+  ++ K L    QN     +      DT +   S E++    I+   L+    +I  S     + S         +++ L  Y           ++Q+ K +PGF + +L+ + +L++ +   + + +LA
Sbjct:    4 CVVCNDKATGYHYGVFTCEGCKGFFKRTVQKQLEYTC-RGNQDCDIN-QHTRNRCQYCRFEKCVKSGMLKQAVRDDRTPGGRHRHASLQ-----------------DHRQKK-------QKLQGKAPKEL---PQNGLSSPEGP----DTPEGVVSKEDENEFLIYIQQLRHDVDVIPDSPVKPPEGS----PAAGFSVDKLMQYGYQEL----YQVIQWGKNVPGFRELKLEDQITLLKTSFMDLNVFRLA 214

HSP 2 Score: 60.8474 bits (146), Expect = 7.977e-10
Identity = 30/72 (41.67%), Postives = 39/72 (54.17%), Query Frame = 3

Query:  543 LCQVCRESAAGFHHGAYVCEACKKFFMRHNLNSTKFTIPCPTGGQCAQLKTGRIKCQSCRFKKCVSIGMALQ 758
            LC VC + A G+H+G + CE CK FF R      ++T  C     C   +  R +CQ CRF+KCV  GM  Q
Sbjct:    3 LCVVCNDKATGYHYGVFTCEGCKGFFKRTVQKQLEYT--CRGNQDCDINQHTRNRCQYCRFEKCVKSGMLKQ 72

[Close]

BLAST of Nuclear receptor 2DBD gamma vs. Ensembl Nematostella
Match: EDO42315 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S1X5])

HSP 1 Score: 78.1814 bits (191), Expect = 1.395e-15
Identity = 36/82 (43.90%), Postives = 49/82 (59.76%), Query Frame = 3

Query:  795 KIPCRVCGGKSSGFHFGALTCEGCKGFFRRTESTKQHLACITGNNNCCLTGSSSRNLCKSCRFNRCLGVGMSKKGSRIGRQP 1040
            ++ C VCG KS+G H+G  TCEGCK FF+RT     +  C  G N C +   +SR+ C SCRF +CL  GM K+  +  + P
Sbjct:    9 RVACAVCGDKSTGKHYGVSTCEGCKSFFKRTVRNNTNYTC-RGQNTCAI-DRNSRSRCPSCRFQKCLSTGMKKEAVQTTKLP 88

HSP 2 Score: 63.1586 bits (152), Expect = 1.229e-10
Identity = 31/72 (43.06%), Postives = 40/72 (55.56%), Query Frame = 3

Query:  534 ESQLCQVCRESAAGFHHGAYVCEACKKFFMRHNLNSTKFTIPCPTGGQCAQLKTGRIKCQSCRFKKCVSIGM 749
            E   C VC + + G H+G   CE CK FF R   N+T +T  C     CA  +  R +C SCRF+KC+S GM
Sbjct:    8 ERVACAVCGDKSTGKHYGVSTCEGCKSFFKRTVRNNTNYT--CRGQNTCAIDRNSRSRCPSCRFQKCLSTGM 77

[Close]

BLAST of Nuclear receptor 2DBD gamma vs. Ensembl Nematostella
Match: EDO42195 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S286])

HSP 1 Score: 78.1814 bits (191), Expect = 1.452e-15
Identity = 34/81 (41.98%), Postives = 48/81 (59.26%), Query Frame = 3

Query:  804 CRVCGGKSSGFHFGALTCEGCKGFFRRTESTKQHLACITGNNNCCLTGSSSRNLCKSCRFNRCLGVGMSKKGSRIGRQPNA 1046
            C +CG +SSGFH+G  +CEGCK FF+RT   +   AC+   +  C    ++R  C+ CRF +CL +GM K+  R  R P  
Sbjct:   14 CAICGDRSSGFHYGVQSCEGCKSFFKRTVQKQLQYACVESKS--CQIDKNNRIRCQYCRFQKCLALGMLKEAVREDRAPGG 92

HSP 2 Score: 62.3882 bits (150), Expect = 2.069e-10
Identity = 27/70 (38.57%), Postives = 41/70 (58.57%), Query Frame = 3

Query:  540 QLCQVCRESAAGFHHGAYVCEACKKFFMRHNLNSTKFTIPCPTGGQCAQLKTGRIKCQSCRFKKCVSIGM 749
            ++C +C + ++GFH+G   CE CK FF R      ++   C     C   K  RI+CQ CRF+KC+++GM
Sbjct:   12 RVCAICGDRSSGFHYGVQSCEGCKSFFKRTVQKQLQYA--CVESKSCQIDKNNRIRCQYCRFQKCLALGM 79

[Close]

BLAST of Nuclear receptor 2DBD gamma vs. Ensembl Nematostella
Match: EDO27017 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7TAF5])

HSP 1 Score: 76.2554 bits (186), Expect = 2.239e-15
Identity = 34/81 (41.98%), Postives = 48/81 (59.26%), Query Frame = 3

Query:  804 CRVCGGKSSGFHFGALTCEGCKGFFRRTESTKQHLACITGNNNCCLTGSSSRNLCKSCRFNRCLGVGMSKKGSRIGRQPNA 1046
            C +CG +SSGFH+G  +CEGCK FF+RT   +   AC+   +  C    ++R  C+ CRF +CL +GM K+  R  R P  
Sbjct:   14 CAICGDRSSGFHYGVQSCEGCKSFFKRTVQKQLQYACVESKS--CQIDKNNRIRCQYCRFQKCLALGMLKEAVREDRAPGG 92

HSP 2 Score: 62.003 bits (149), Expect = 1.463e-10
Identity = 27/70 (38.57%), Postives = 41/70 (58.57%), Query Frame = 3

Query:  540 QLCQVCRESAAGFHHGAYVCEACKKFFMRHNLNSTKFTIPCPTGGQCAQLKTGRIKCQSCRFKKCVSIGM 749
            ++C +C + ++GFH+G   CE CK FF R      ++   C     C   K  RI+CQ CRF+KC+++GM
Sbjct:   12 RVCAICGDRSSGFHYGVQSCEGCKSFFKRTVQKQLQYA--CVESKSCQIDKNNRIRCQYCRFQKCLALGM 79

[Close]

BLAST of Nuclear receptor 2DBD gamma vs. Ensembl Nematostella
Match: EDO44874 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RUL3])

HSP 1 Score: 77.0258 bits (188), Expect = 2.336e-15
Identity = 35/76 (46.05%), Postives = 45/76 (59.21%), Query Frame = 3

Query:  804 CRVCGGKSSGFHFGALTCEGCKGFFRRT--ESTKQHLACITGNNNCCLTGSSSRNLCKSCRFNRCLGVGMSKKGSR 1025
            C VCG +SSG+H+GA TCEGCK FF+RT      +  +C+  N N C    +SR  C++CR  RC   GM   G R
Sbjct:    7 CAVCGDESSGYHYGAYTCEGCKSFFKRTVQRGLVKKYSCVRSNQNQCPMDKNSRAKCQACRLQRCFDAGMVLNGVR 82

HSP 2 Score: 61.6178 bits (148), Expect = 3.276e-10
Identity = 29/72 (40.28%), Postives = 39/72 (54.17%), Query Frame = 3

Query:  546 CQVCRESAAGFHHGAYVCEACKKFFMRHNLNST--KFTIPCPTGGQCAQLKTGRIKCQSCRFKKCVSIGMAL 755
            C VC + ++G+H+GAY CE CK FF R        K++       QC   K  R KCQ+CR ++C   GM L
Sbjct:    7 CAVCGDESSGYHYGAYTCEGCKSFFKRTVQRGLVKKYSCVRSNQNQCPMDKNSRAKCQACRLQRCFDAGMVL 78

[Close]

BLAST of Nuclear receptor 2DBD gamma vs. Ensembl Medaka
Match: RARB (retinoic acid receptor beta [Source:NCBI gene;Acc:101155959])

HSP 1 Score: 98.2117 bits (243), Expect = 2.359e-21
Identity = 80/308 (25.97%), Postives = 123/308 (39.94%), Query Frame = 3

Query:  801 PCRVCGGKSSGFHFGALTCEGCKGFFRRTESTKQHLACITGNNNCCLTGSSSRNLCKSCRFNRCLGVGMSKKGSRIGRQPNAVKFHCVLEIMQRTCDQYDGASESANDNSKRKSVFHRAYRKVCQQSQKNLIRCSQNHFDKLKNDLSIFDTKDIFYSNEEKFIFESSLKEATRIIEISKANLQDLSSRQFSKKYLTLN-DLWNYMMNNFDVHSAMIVQFVKAIPGFNKFELKSRRSLVQDAMYPIMLLKLAQDYKPDVDEYNYFDFSLIDREVILNNFQSFKRITDHLLSISRMVHSLQLSSYPISLL 1721
            PC VC  KSSG+H+G   CEGCKGFFRR+        C    N  C+    +RN C+ CR  RC  VGMSK+  R                               ND SKRK             ++K  ++ +     +L  +L +   K I  ++ E F               S   L   ++   S   + L+  LW+            +V+F K +PGF    +  + +L++ A   I++L++   Y PD D   + D   + R  I N    F  +TDH+ + +  +  L++      LL
Sbjct:   86 PCFVCQDKSSGYHYGVSACEGCKGFFRRSVQKNMVYTCHRDRN--CIINKITRNRCQYCRLQRCFAVGMSKESVR-------------------------------NDRSKRK-------------AKKEAVKMTIMETYELTAELGLVVEK-ICRAHRETF--------------PSLCQLGKYTTNSSSDHRIQLDLGLWDKFSELATKCIVKVVEFAKRVPGFTGLTIADQITLLKAACLDILILRICTRYTPDQDTMTFSDGLTLTRTQIHN--AGFGSLTDHVFTFAGQLLPLEMDETESGLL 330

HSP 2 Score: 59.6918 bits (143), Expect = 6.788e-9
Identity = 28/79 (35.44%), Postives = 44/79 (55.70%), Query Frame = 3

Query:  546 CQVCRESAAGFHHGAYVCEACKKFFMRHNLNSTKFTIPCPTGGQCAQLKTGRIKCQSCRFKKCVSIGMALQNPNNGNSK 782
            C VC++ ++G+H+G   CE CK FF R    +  +T  C     C   K  R +CQ CR ++C ++GM+ ++  N  SK
Sbjct:   87 CFVCQDKSSGYHYGVSACEGCKGFFRRSVQKNMVYT--CHRDRNCIINKITRNRCQYCRLQRCFAVGMSKESVRNDRSK 163

[Close]

BLAST of Nuclear receptor 2DBD gamma vs. Ensembl Medaka
Match: RARB (retinoic acid receptor beta [Source:NCBI gene;Acc:101155959])

HSP 1 Score: 97.8265 bits (242), Expect = 4.812e-21
Identity = 80/308 (25.97%), Postives = 123/308 (39.94%), Query Frame = 3

Query:  801 PCRVCGGKSSGFHFGALTCEGCKGFFRRTESTKQHLACITGNNNCCLTGSSSRNLCKSCRFNRCLGVGMSKKGSRIGRQPNAVKFHCVLEIMQRTCDQYDGASESANDNSKRKSVFHRAYRKVCQQSQKNLIRCSQNHFDKLKNDLSIFDTKDIFYSNEEKFIFESSLKEATRIIEISKANLQDLSSRQFSKKYLTLN-DLWNYMMNNFDVHSAMIVQFVKAIPGFNKFELKSRRSLVQDAMYPIMLLKLAQDYKPDVDEYNYFDFSLIDREVILNNFQSFKRITDHLLSISRMVHSLQLSSYPISLL 1721
            PC VC  KSSG+H+G   CEGCKGFFRR+        C    N  C+    +RN C+ CR  RC  VGMSK+  R                               ND SKRK             ++K  ++ +     +L  +L +   K I  ++ E F               S   L   ++   S   + L+  LW+            +V+F K +PGF    +  + +L++ A   I++L++   Y PD D   + D   + R  I N    F  +TDH+ + +  +  L++      LL
Sbjct:   89 PCFVCQDKSSGYHYGVSACEGCKGFFRRSVQKNMVYTCHRDRN--CIINKITRNRCQYCRLQRCFAVGMSKESVR-------------------------------NDRSKRK-------------AKKEAVKMTIMETYELTAELGLVVEK-ICRAHRETF--------------PSLCQLGKYTTNSSSDHRIQLDLGLWDKFSELATKCIVKVVEFAKRVPGFTGLTIADQITLLKAACLDILILRICTRYTPDQDTMTFSDGLTLTRTQIHN--AGFGSLTDHVFTFAGQLLPLEMDETESGLL 333

HSP 2 Score: 58.5362 bits (140), Expect = 1.411e-8
Identity = 28/79 (35.44%), Postives = 44/79 (55.70%), Query Frame = 3

Query:  546 CQVCRESAAGFHHGAYVCEACKKFFMRHNLNSTKFTIPCPTGGQCAQLKTGRIKCQSCRFKKCVSIGMALQNPNNGNSK 782
            C VC++ ++G+H+G   CE CK FF R    +  +T  C     C   K  R +CQ CR ++C ++GM+ ++  N  SK
Sbjct:   90 CFVCQDKSSGYHYGVSACEGCKGFFRRSVQKNMVYT--CHRDRNCIINKITRNRCQYCRLQRCFAVGMSKESVRNDRSK 166

[Close]

BLAST of Nuclear receptor 2DBD gamma vs. Ensembl Medaka
Match: roraa (RAR related orphan receptor A [Source:NCBI gene;Acc:101167704])

HSP 1 Score: 97.4413 bits (241), Expect = 5.796e-21
Identity = 42/85 (49.41%), Postives = 55/85 (64.71%), Query Frame = 3

Query:  780 KFDISKIPCRVCGGKSSGFHFGALTCEGCKGFFRRTESTKQHLACITGNNNCCLTGSSSRNLCKSCRFNRCLGVGMSKKGSRIGR 1034
            K  I  IPC++CG KSSG H+G +TCEGCKGFFRR++ +    +C    N  CL   +SRN C+ CR  +CL VGMS+   + GR
Sbjct:   10 KAQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNAAYSCPRQKN--CLIDRTSRNRCQHCRLQKCLAVGMSRDAVKFGR 92

HSP 2 Score: 63.5438 bits (153), Expect = 4.165e-10
Identity = 26/75 (34.67%), Postives = 45/75 (60.00%), Query Frame = 3

Query:  528 KMESQLCQVCRESAAGFHHGAYVCEACKKFFMRHNLNSTKFTIPCPTGGQCAQLKTGRIKCQSCRFKKCVSIGMA 752
            ++E   C++C + ++G H+G   CE CK FF R   ++  ++  CP    C   +T R +CQ CR +KC+++GM+
Sbjct:   12 QIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNAAYS--CPRQKNCLIDRTSRNRCQHCRLQKCLAVGMS 84

[Close]

BLAST of Nuclear receptor 2DBD gamma vs. Ensembl Medaka
Match: roraa (RAR related orphan receptor A [Source:NCBI gene;Acc:101167704])

HSP 1 Score: 97.0561 bits (240), Expect = 1.242e-20
Identity = 41/82 (50.00%), Postives = 54/82 (65.85%), Query Frame = 3

Query:  789 ISKIPCRVCGGKSSGFHFGALTCEGCKGFFRRTESTKQHLACITGNNNCCLTGSSSRNLCKSCRFNRCLGVGMSKKGSRIGR 1034
            I  IPC++CG KSSG H+G +TCEGCKGFFRR++ +    +C    N  CL   +SRN C+ CR  +CL VGMS+   + GR
Sbjct:   64 IEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNAAYSCPRQKN--CLIDRTSRNRCQHCRLQKCLAVGMSRDAVKFGR 143

HSP 2 Score: 63.929 bits (154), Expect = 3.337e-10
Identity = 26/78 (33.33%), Postives = 46/78 (58.97%), Query Frame = 3

Query:  519 YQQKMESQLCQVCRESAAGFHHGAYVCEACKKFFMRHNLNSTKFTIPCPTGGQCAQLKTGRIKCQSCRFKKCVSIGMA 752
            +  ++E   C++C + ++G H+G   CE CK FF R   ++  ++  CP    C   +T R +CQ CR +KC+++GM+
Sbjct:   60 HTSQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNAAYS--CPRQKNCLIDRTSRNRCQHCRLQKCLAVGMS 135

[Close]

BLAST of Nuclear receptor 2DBD gamma vs. Ensembl Medaka
Match: roraa (RAR related orphan receptor A [Source:NCBI gene;Acc:101167704])

HSP 1 Score: 96.2857 bits (238), Expect = 1.276e-20
Identity = 41/82 (50.00%), Postives = 54/82 (65.85%), Query Frame = 3

Query:  789 ISKIPCRVCGGKSSGFHFGALTCEGCKGFFRRTESTKQHLACITGNNNCCLTGSSSRNLCKSCRFNRCLGVGMSKKGSRIGR 1034
            I  IPC++CG KSSG H+G +TCEGCKGFFRR++ +    +C    N  CL   +SRN C+ CR  +CL VGMS+   + GR
Sbjct:   14 IEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNAAYSCPRQKN--CLIDRTSRNRCQHCRLQKCLAVGMSRDAVKFGR 93

HSP 2 Score: 63.5438 bits (153), Expect = 4.556e-10
Identity = 26/75 (34.67%), Postives = 45/75 (60.00%), Query Frame = 3

Query:  528 KMESQLCQVCRESAAGFHHGAYVCEACKKFFMRHNLNSTKFTIPCPTGGQCAQLKTGRIKCQSCRFKKCVSIGMA 752
            ++E   C++C + ++G H+G   CE CK FF R   ++  ++  CP    C   +T R +CQ CR +KC+++GM+
Sbjct:   13 QIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNAAYS--CPRQKNCLIDRTSRNRCQHCRLQKCLAVGMS 85

[Close]

BLAST of Nuclear receptor 2DBD gamma vs. Planmine SMEST
Match: SMESG000008787.1 (SMESG000008787.1)

HSP 1 Score: 1418.29 bits (3670), Expect = 0.000e+0
Identity = 679/681 (99.71%), Postives = 680/681 (99.85%), Query Frame = 3

Query:   33 MDYNIQTCTDCIQNNFDWETQQRFNELKSQTSSWLFTNQIPDQRKYENLKFPWFLKDYPITMNMDEYDYAHHLNTWNTDWNYIDKFKTLDSSESFEPDNIEMIANHNKFNSLSDVKCENLVASMKDSTEFSDISSAVEYKDETSEIPEQHLTFTSPESAFYDYQQKMESQLCQVCRESAAGFHHGAYVCEACKKFFMRHNLNSTKFTIPCPTGGQCAQLKTGRIKCQSCRFKKCVSIGMALQNPNNGNSKFDISKIPCRVCGGKSSGFHFGALTCEGCKGFFRRTESTKQHLACITGNNNCCLTGSSSRNLCKSCRFNRCLGVGMSKKGSRIGRQPNAVKFHCVLEIMQRTCDQYDGASESANDNSKRKSVFHRAYRKVCQQSQKNLIRCSQNHFDKLKNDLSIFDTKDIFYSNEEKFIFESSLKEATRIIEISKANLQDLSSRQFSKKYLTLNDLWNYMMNNFDVHSAMIVQFVKAIPGFNKFELKSRRSLVQDAMYPIMLLKLAQDYKPDVDEYNYFDFSLIDREVILNNFQSFKRITDHLLSISRMVHSLQLSSYPISLLCVTELMKNYHLLSDEEEGKRILNQAKSLLWLFLENNEVEDNTIGNLTKQTEMLNLHPKNYQKYIKIFEEMPKLLSEMNSEHLKIIQELKYLHPELLFPELYIDMFNIQDPQTVIDANL 2075
            MDYNIQTCTDCIQNNFDWETQQRFNELKSQTSSWLFTNQIPDQRKYENLKFPWFLKDYPITMNMDEYDYAHHLNTWNTDWNYIDKFKTLDSSESFEPDNIEMIANHNKFNSLSDVKCENLVASMKDSTEFSDISSAVEYKDETSEIPEQHLTFTSPESAFYDYQQKMESQLCQVCRESAAGFHHGAYVCEACKKFFMRHNLNSTKFTIPCPTGGQCAQLKTGRIKCQSCRFKKCVSIGMALQNPNNGNSKFDISKIPCRVCGGKSSGFHFGALTCEGCKGFFRRTESTKQHLACITGNN+CCLTGSSSRNLCKSCRFNRCLGVGMSKKGSRIGRQPNAVKFHCVLEIMQRTCDQYDGASESANDNSKRKSVFHRAYRKVCQQSQKNLIRCSQNHFDKLKNDLSIFDTKDIFYSNEEKFIFESSLKEATRIIEISKANLQDLSSRQFSKKYLTLNDLWNYMMNNFDVHSAMIVQFVKAIPGFNKFELKSRRSLVQDAMYPIMLLKLAQDYKPDVDEYNYFDFSLIDREVILNNFQSFKRITDHLLSISRMVHSLQLSSYPISLLCVTELMKNYHLLSDEEEGKRILNQAKSLLWLFLENNEVEDNTIGNLTKQTEMLNL PKNYQKYIKIFEEMPKLLSEMNSEHLKIIQELKYLHPELLFPELYIDMFNIQDPQTVIDANL
Sbjct:    1 MDYNIQTCTDCIQNNFDWETQQRFNELKSQTSSWLFTNQIPDQRKYENLKFPWFLKDYPITMNMDEYDYAHHLNTWNTDWNYIDKFKTLDSSESFEPDNIEMIANHNKFNSLSDVKCENLVASMKDSTEFSDISSAVEYKDETSEIPEQHLTFTSPESAFYDYQQKMESQLCQVCRESAAGFHHGAYVCEACKKFFMRHNLNSTKFTIPCPTGGQCAQLKTGRIKCQSCRFKKCVSIGMALQNPNNGNSKFDISKIPCRVCGGKSSGFHFGALTCEGCKGFFRRTESTKQHLACITGNNDCCLTGSSSRNLCKSCRFNRCLGVGMSKKGSRIGRQPNAVKFHCVLEIMQRTCDQYDGASESANDNSKRKSVFHRAYRKVCQQSQKNLIRCSQNHFDKLKNDLSIFDTKDIFYSNEEKFIFESSLKEATRIIEISKANLQDLSSRQFSKKYLTLNDLWNYMMNNFDVHSAMIVQFVKAIPGFNKFELKSRRSLVQDAMYPIMLLKLAQDYKPDVDEYNYFDFSLIDREVILNNFQSFKRITDHLLSISRMVHSLQLSSYPISLLCVTELMKNYHLLSDEEEGKRILNQAKSLLWLFLENNEVEDNTIGNLTKQTEMLNLPPKNYQKYIKIFEEMPKLLSEMNSEHLKIIQELKYLHPELLFPELYIDMFNIQDPQTVIDANL 681

[Close]

BLAST of Nuclear receptor 2DBD gamma vs. Planmine SMEST
Match: SMESG000007787.1 (SMESG000007787.1)

HSP 1 Score: 387.882 bits (995), Expect = 3.504e-126
Identity = 236/555 (42.52%), Postives = 311/555 (56.04%), Query Frame = 3

Query:  486 TFTSPESAFYDYQQKMESQLCQVCRESAAGFHHGAYVCEACKKFFMRHNLNSTKFTIPCPTGGQCAQLKTGRIKCQSCRFKKCVSIGMALQNPNNGNSKFDISKIPCRVCGGKSSGFHFGALTCEGCKGFFRRTESTKQHLACITGNNNCCLTGSSSRNLCKSCRFNRCLGVGMSKKGSRIGRQPNAVKFHCVLEIMQRTCDQYDGASESANDNSKRKSVFHRAYRKVCQQSQKNLIRCSQNHFDKLKNDLSIFDTK--------DIFYSNEEKFIFESSLKEATRIIEISKANLQDL--SSRQFSKKYLTLNDLWNYMMNNFDVHSAMIVQFVKAIPGFNKFELKSRRSLVQDAMYPIMLLKLAQDYKPDVDE-YNYFDFSLIDREVILNNFQSFKRITDHLLSISRMVHSLQLSSYPISLLCVTELMKNYHLLSDEEEGKRILNQAKSLLWLFL---ENNEVEDNTIGN---LTKQTEMLNL-------------------HPKNYQKYIKIFEEMPKLLSEMNSEHLKIIQELKYLHPELLFPELYIDMFNI 2042
            TF+SPESAFY+YQ KME+QLCQVC   AAGFHHGAYVCEACKKFF R++ N     + C     C   K GR KC  CR++KC+++GM      +  S  DIS+IPCRVCGGKSSGFHFG+LTCEGCKGFFRR E  K  L C++G  N C+  SS +  CK CR++RC+ VGMSK GSRIGRQPNAVK HC LEI+              N NS   S     Y ++C       I  S +  ++     SI  T              +     F S L EA +I++      + L   +R    +  +L ++WN MM +FDVH+ ++V F K +PGFN   L  +R++VQDAMY IMLL LA+ Y+ D DE +NYFDFS  + EVIL +F   K+I  H++ ISR+++ L ++   I LLC+ EL KNY  L   +  + I  +   L W+ +    +NE      GN   L + + +L +                     K  QK   IF+ + + L E N EH  II ELK   PEL +PELY +MF +
Sbjct:   26 TFSSPESAFYEYQIKMENQLCQVCNCLAAGFHHGAYVCEACKKFFKRYSTNQLNSKVVCKKN--CDLEKIGRRKCSFCRYQKCLNVGMKFFGLRSNKSNIDISQIPCRVCGGKSSGFHFGSLTCEGCKGFFRRAEPLKDKLECVSGKLN-CVIDSSHKMPCKWCRYHRCIKVGMSKIGSRIGRQPNAVKHHCALEIIHYQ-----------NRNSS-PSTLDIPYHEICSS-----ISESNSDGNQRSISYSIPSTPVPSEWSMSFSSSPDGHSQAFCSKLIEAIKILQKPLLEAEKLFHMTRFPVHRNQSLLEVWNSMMRHFDVHTCILVYFAKKVPGFNDLSLSDKRTMVQDAMYSIMLLNLARSYEEDKDEFFNYFDFSKDEYEVILFHFPEMKKILAHVMEISRIIYKLNITKDQIGLLCIIELSKNYINLESFDAVRTIHKEVVRLFWISILKELDNEALLTEPGNPPSLPQMSVLLQVLNCPDDLISQIVFKIPKCTENKWCQKLHIIFKVLGEKLQEFNIEHQMIIDELKRNKPELPYPELYTEMFQL 560

[Close]

BLAST of Nuclear receptor 2DBD gamma vs. Planmine SMEST
Match: SMESG000020242.1 (SMESG000020242.1)

HSP 1 Score: 210.305 bits (534), Expect = 2.827e-57
Identity = 101/191 (52.88%), Postives = 125/191 (65.45%), Query Frame = 3

Query:  513 YDYQQKMESQLCQVCRESAAGFHHGAYVCEACKKFFMRHNLNSTKFTIPCPTGGQCAQLKTGRIKCQSCRFKKCVSIGMALQNPNNGNSKFDISKIPCRVCGGKSSGFHFGALTCEGCKGFFRRT--ESTKQHLACITGNNNCCLTGSSSRNLCKSCRFNRCLGVGMSKKGSRIGRQPNAVKFHCVLEIMQ 1079
            Y+Y++  E + C VC + +AGFH  A+VCEACKKFF+R +   +     C     C  +K  R  CQ CRF+KC+ +GM L   N  N   DIS IPCRVCG +SSGFHFGA+TCEGCKGFFRRT  E   Q   C  G N  C+   ++RN CKSCR+ +CL +GMSK+GSRIGRQPNA+K  C  EI Q
Sbjct:  250 YNYREMKEKRKCDVCGDVSAGFHCSAFVCEACKKFFIRSSKGDSYTKYSCTKNNNCEIVKDTRTHCQYCRFQKCLHLGMTLPGAN-LNQNTDISLIPCRVCGAQSSGFHFGAITCEGCKGFFRRTINERENQKYTCRNGGN--CVINLATRNNCKSCRYKKCLAMGMSKEGSRIGRQPNAIKHMCAKEISQ 437

HSP 2 Score: 118.627 bits (296), Expect = 3.488e-27
Identity = 66/216 (30.56%), Postives = 112/216 (51.85%), Query Frame = 3

Query: 1398 LWNYMMNNFDVHSAMIVQFVKAIPGFNKFELKSRRSLVQDAMYPIMLLKLAQDYKPDVDEYNYFDFSLIDREVILNNFQSFKRITDHLLSISRMVHSLQLSSYPISLLCVTELMKNYHL-LSDEEEGKRILNQAKSLLWLFLENNEVEDNTIGNLTKQTEMLNLHPKNYQKYIKIFEEMPKLLSEMNSEHLKIIQELKYLHPELLFPELYIDMFNI 2042
            +W+ MM +F  H+  +++F KA+PGF +      + LVQ+ MYPI+L++L++D+    DE+NYF+FS  ++E+IL  F  F +I DH++   R++    L     SL+C  EL+K     + D  +  ++   + + L L++         IG+   + +              + E  P +LS+M  EH + +  L+   P L FP LY  MF I
Sbjct:  679 VWDVMMQHFQAHAIQVIKFAKAVPGFKELFHNDMKVLVQEGMYPIILVQLSRDFNLATDEFNYFNFSNKEKEIILTRFAIFNKIADHVMKSGRLIKLKNLDDTIFSLICYVELVKGESCSVFDRNKVNQMYQYSMNALKLYMTE-------IGSTQNEID-------------SVLEIFP-VLSKMTHEHQEAVMMLRTSKPHLKFPNLYTQMFLI 873

[Close]

BLAST of Nuclear receptor 2DBD gamma vs. Planmine SMEST
Match: SMESG000020242.1 (SMESG000020242.1)

HSP 1 Score: 210.305 bits (534), Expect = 3.179e-57
Identity = 101/191 (52.88%), Postives = 125/191 (65.45%), Query Frame = 3

Query:  513 YDYQQKMESQLCQVCRESAAGFHHGAYVCEACKKFFMRHNLNSTKFTIPCPTGGQCAQLKTGRIKCQSCRFKKCVSIGMALQNPNNGNSKFDISKIPCRVCGGKSSGFHFGALTCEGCKGFFRRT--ESTKQHLACITGNNNCCLTGSSSRNLCKSCRFNRCLGVGMSKKGSRIGRQPNAVKFHCVLEIMQ 1079
            Y+Y++  E + C VC + +AGFH  A+VCEACKKFF+R +   +     C     C  +K  R  CQ CRF+KC+ +GM L   N  N   DIS IPCRVCG +SSGFHFGA+TCEGCKGFFRRT  E   Q   C  G N  C+   ++RN CKSCR+ +CL +GMSK+GSRIGRQPNA+K  C  EI Q
Sbjct:  250 YNYREMKEKRKCDVCGDVSAGFHCSAFVCEACKKFFIRSSKGDSYTKYSCTKNNNCEIVKDTRTHCQYCRFQKCLHLGMTLPGAN-LNQNTDISLIPCRVCGAQSSGFHFGAITCEGCKGFFRRTINERENQKYTCRNGGN--CVINLATRNNCKSCRYKKCLAMGMSKEGSRIGRQPNAIKHMCAKEISQ 437

HSP 2 Score: 118.627 bits (296), Expect = 3.804e-27
Identity = 66/216 (30.56%), Postives = 112/216 (51.85%), Query Frame = 3

Query: 1398 LWNYMMNNFDVHSAMIVQFVKAIPGFNKFELKSRRSLVQDAMYPIMLLKLAQDYKPDVDEYNYFDFSLIDREVILNNFQSFKRITDHLLSISRMVHSLQLSSYPISLLCVTELMKNYHL-LSDEEEGKRILNQAKSLLWLFLENNEVEDNTIGNLTKQTEMLNLHPKNYQKYIKIFEEMPKLLSEMNSEHLKIIQELKYLHPELLFPELYIDMFNI 2042
            +W+ MM +F  H+  +++F KA+PGF +      + LVQ+ MYPI+L++L++D+    DE+NYF+FS  ++E+IL  F  F +I DH++   R++    L     SL+C  EL+K     + D  +  ++   + + L L++         IG+   + +              + E  P +LS+M  EH + +  L+   P L FP LY  MF I
Sbjct:  685 VWDVMMQHFQAHAIQVIKFAKAVPGFKELFHNDMKVLVQEGMYPIILVQLSRDFNLATDEFNYFNFSNKEKEIILTRFAIFNKIADHVMKSGRLIKLKNLDDTIFSLICYVELVKGESCSVFDRNKVNQMYQYSMNALKLYMTE-------IGSTQNEID-------------SVLEIFP-VLSKMTHEHQEAVMMLRTSKPHLKFPNLYTQMFLI 879

[Close]

BLAST of Nuclear receptor 2DBD gamma vs. Planmine SMEST
Match: SMESG000020242.1 (SMESG000020242.1)

HSP 1 Score: 210.305 bits (534), Expect = 3.275e-57
Identity = 101/191 (52.88%), Postives = 125/191 (65.45%), Query Frame = 3

Query:  513 YDYQQKMESQLCQVCRESAAGFHHGAYVCEACKKFFMRHNLNSTKFTIPCPTGGQCAQLKTGRIKCQSCRFKKCVSIGMALQNPNNGNSKFDISKIPCRVCGGKSSGFHFGALTCEGCKGFFRRT--ESTKQHLACITGNNNCCLTGSSSRNLCKSCRFNRCLGVGMSKKGSRIGRQPNAVKFHCVLEIMQ 1079
            Y+Y++  E + C VC + +AGFH  A+VCEACKKFF+R +   +     C     C  +K  R  CQ CRF+KC+ +GM L   N  N   DIS IPCRVCG +SSGFHFGA+TCEGCKGFFRRT  E   Q   C  G N  C+   ++RN CKSCR+ +CL +GMSK+GSRIGRQPNA+K  C  EI Q
Sbjct:  268 YNYREMKEKRKCDVCGDVSAGFHCSAFVCEACKKFFIRSSKGDSYTKYSCTKNNNCEIVKDTRTHCQYCRFQKCLHLGMTLPGAN-LNQNTDISLIPCRVCGAQSSGFHFGAITCEGCKGFFRRTINERENQKYTCRNGGN--CVINLATRNNCKSCRYKKCLAMGMSKEGSRIGRQPNAIKHMCAKEISQ 455

HSP 2 Score: 118.242 bits (295), Expect = 3.898e-27
Identity = 66/216 (30.56%), Postives = 112/216 (51.85%), Query Frame = 3

Query: 1398 LWNYMMNNFDVHSAMIVQFVKAIPGFNKFELKSRRSLVQDAMYPIMLLKLAQDYKPDVDEYNYFDFSLIDREVILNNFQSFKRITDHLLSISRMVHSLQLSSYPISLLCVTELMKNYHL-LSDEEEGKRILNQAKSLLWLFLENNEVEDNTIGNLTKQTEMLNLHPKNYQKYIKIFEEMPKLLSEMNSEHLKIIQELKYLHPELLFPELYIDMFNI 2042
            +W+ MM +F  H+  +++F KA+PGF +      + LVQ+ MYPI+L++L++D+    DE+NYF+FS  ++E+IL  F  F +I DH++   R++    L     SL+C  EL+K     + D  +  ++   + + L L++         IG+   + +              + E  P +LS+M  EH + +  L+   P L FP LY  MF I
Sbjct:  697 VWDVMMQHFQAHAIQVIKFAKAVPGFKELFHNDMKVLVQEGMYPIILVQLSRDFNLATDEFNYFNFSNKEKEIILTRFAIFNKIADHVMKSGRLIKLKNLDDTIFSLICYVELVKGESCSVFDRNKVNQMYQYSMNALKLYMTE-------IGSTQNEID-------------SVLEIFP-VLSKMTHEHQEAVMMLRTSKPHLKFPNLYTQMFLI 891

The following BLAST results are available for this feature:

BLAST of Nuclear receptor 2DBD gamma vs. Ensembl Human
BLAST of Nuclear receptor 2DBD gamma vs. Ensembl Celegans
BLAST of Nuclear receptor 2DBD gamma vs. Ensembl Fly
BLAST of Nuclear receptor 2DBD gamma vs. Ensembl Zebrafish
BLAST of Nuclear receptor 2DBD gamma vs. Ensembl Xenopus
BLAST of Nuclear receptor 2DBD gamma vs. Ensembl Mouse
BLAST of Nuclear receptor 2DBD gamma vs. UniProt/SwissProt
BLAST of Nuclear receptor 2DBD gamma vs. TrEMBL
BLAST of Nuclear receptor 2DBD gamma vs. Ensembl Cavefish
BLAST of Nuclear receptor 2DBD gamma vs. Ensembl Sea Lamprey
BLAST of Nuclear receptor 2DBD gamma vs. Ensembl Yeast
BLAST of Nuclear receptor 2DBD gamma vs. Ensembl Nematostella
BLAST of Nuclear receptor 2DBD gamma vs. Ensembl Medaka
BLAST of Nuclear receptor 2DBD gamma vs. Planmine SMEST

BLAST of Nuclear receptor 2DBD gamma vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5


Match Name	E-value	Identity	Description
RORA	1.243e-22	50.00	RAR related orphan receptor A [Source:HGNC Symbol;...	[more]
RORA	7.216e-21	49.41	RAR related orphan receptor A [Source:HGNC Symbol;...	[more]
RORA	1.777e-20	49.41	RAR related orphan receptor A [Source:HGNC Symbol;...	[more]
PPARG	1.806e-20	31.75	peroxisome proliferator activated receptor gamma [...	[more]
RORA	2.305e-20	50.00	RAR related orphan receptor A [Source:HGNC Symbol;...	[more]

BLAST of Nuclear receptor 2DBD gamma vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 5


Match Name	E-value	Identity	Description
nhr-23	5.801e-19	47.56	Nuclear hormone receptor family member nhr-23 [So...	[more]
nhr-23	5.977e-19	47.56	Nuclear hormone receptor family member nhr-23 [So...	[more]
nhr-23	1.168e-18	47.56	Nuclear hormone receptor family member nhr-23 [So...	[more]
nhr-23	1.371e-18	47.56	Nuclear hormone receptor family member nhr-23 [So...	[more]
nhr-23	1.467e-18	47.56	Nuclear hormone receptor family member nhr-23 [So...	[more]

BLAST of Nuclear receptor 2DBD gamma vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 5


Match Name	E-value	Identity	Description
eg	2.281e-22	51.04	gene:FBgn0000560 transcript:FBtr0078437	[more]
eg	2.281e-22	51.04	gene:FBgn0000560 transcript:FBtr0078438	[more]
Hr3	5.501e-22	43.24	gene:FBgn0000448 transcript:FBtr0088368	[more]
Hr3	5.501e-22	43.24	gene:FBgn0000448 transcript:FBtr0306345	[more]
Hr3	7.480e-22	42.98	gene:FBgn0000448 transcript:FBtr0112799	[more]

BLAST of Nuclear receptor 2DBD gamma vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
roraa	8.313e-21	49.41	RAR-related orphan receptor A, paralog a [Source:N...	[more]
roraa	1.541e-20	50.00	RAR-related orphan receptor A, paralog a [Source:N...	[more]
rorab	1.703e-20	48.24	RAR-related orphan receptor A, paralog b [Source:N...	[more]
rorc	2.542e-20	47.06	RAR-related orphan receptor C [Source:ZFIN;Acc:ZDB...	[more]
rorab	3.919e-20	48.78	RAR-related orphan receptor A, paralog b [Source:N...	[more]

BLAST of Nuclear receptor 2DBD gamma vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5


Match Name	E-value	Identity	Description
kcnk4	5.025e-21	40.83	potassium channel, two pore domain subfamily K, me...	[more]
kcnk4	8.450e-21	40.16	potassium channel, two pore domain subfamily K, me...	[more]
kcnk4	8.689e-21	41.03	potassium channel, two pore domain subfamily K, me...	[more]
kcnk4	9.725e-21	40.16	potassium channel, two pore domain subfamily K, me...	[more]
kcnk4	1.033e-20	41.03	potassium channel, two pore domain subfamily K, me...	[more]

BLAST of Nuclear receptor 2DBD gamma vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5


Match Name	E-value	Identity	Description
Rora	4.872e-21	49.41	RAR-related orphan receptor alpha [Source:MGI Symb...	[more]
Ppara	9.052e-21	27.56	peroxisome proliferator activated receptor alpha [...	[more]
Ppara	9.052e-21	27.56	peroxisome proliferator activated receptor alpha [...	[more]
Ppara	9.052e-21	27.56	peroxisome proliferator activated receptor alpha [...	[more]
Pparg	1.807e-20	52.17	peroxisome proliferator activated receptor gamma [...	[more]

BLAST of Nuclear receptor 2DBD gamma vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5


Match Name	E-value	Identity	Description
sp\|O18971\|PPARG_BOVIN	5.866e-23	27.12	Peroxisome proliferator-activated receptor gamma O...	[more]
sp\|P15370\|EGON_DROME	2.286e-21	51.04	Protein embryonic gonad OS=Drosophila melanogaster...	[more]
sp\|P31396\|HR3_DROME	5.514e-21	43.24	Probable nuclear hormone receptor HR3 OS=Drosophil...	[more]
sp\|P37230\|PPARA_RAT	2.669e-20	28.13	Peroxisome proliferator-activated receptor alpha O...	[more]
sp\|Q08882\|HR3_MANSE	2.749e-20	26.45	Probable nuclear hormone receptor HR3 OS=Manduca s...	[more]

BLAST of Nuclear receptor 2DBD gamma vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A564Y0P1	5.546e-88	63.01	Uncharacterized protein (Fragment) OS=Hymenolepis ...	[more]
A0A158QEI5	8.071e-88	63.01	Uncharacterized protein OS=Hymenolepis diminuta OX...	[more]
A0A5K3ENQ7	1.219e-87	67.51	Uncharacterized protein OS=Mesocestoides corti OX=...	[more]
A0A5K3ELX8	1.821e-87	67.51	Uncharacterized protein OS=Mesocestoides corti OX=...	[more]
A0A068Y2L3	1.887e-87	46.71	Nuclear receptor 2DBD gamma OS=Echinococcus multil...	[more]

BLAST of Nuclear receptor 2DBD gamma vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
pparaa	1.669e-22	24.59	peroxisome proliferator-activated receptor alpha [...	[more]
roraa	1.403e-20	50.00	nuclear receptor ROR-alpha [Source:NCBI gene;Acc:1...	[more]
roraa	1.613e-20	50.00	nuclear receptor ROR-alpha [Source:NCBI gene;Acc:1...	[more]
roraa	1.770e-20	49.41	nuclear receptor ROR-alpha [Source:NCBI gene;Acc:1...	[more]
rorcb	6.390e-20	47.56	nuclear receptor ROR-beta-like [Source:NCBI gene;A...	[more]

BLAST of Nuclear receptor 2DBD gamma vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 5


Match Name	E-value	Identity	Description
rorb	6.906e-20	47.56	RAR-related orphan receptor B [Source:ZFIN;Acc:ZDB...	[more]
nr1d2a	3.534e-17	45.05	nuclear receptor subfamily 1, group D, member 2a [...	[more]
thrb	2.566e-16	47.83	thyroid hormone receptor beta [Source:NCBI gene;Ac...	[more]
thrb	2.080e-15	44.29	thyroid hormone receptor beta [Source:NCBI gene;Ac...	[more]
ENSPMAT00000004045.1	4.217e-14	45.07	pep scaffold:Pmarinus_7.0:GL477450:33951:67473:1 g...	[more]

BLAST of Nuclear receptor 2DBD gamma vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Nuclear receptor 2DBD gamma vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 5


Match Name	E-value	Identity	Description
EDO39982	4.017e-16	25.40	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO42315	1.395e-15	43.90	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO42195	1.452e-15	41.98	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO27017	2.239e-15	41.98	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO44874	2.336e-15	46.05	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]

BLAST of Nuclear receptor 2DBD gamma vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5


Match Name	E-value	Identity	Description
RARB	2.359e-21	25.97	retinoic acid receptor beta [Source:NCBI gene;Acc:...	[more]
RARB	4.812e-21	25.97	retinoic acid receptor beta [Source:NCBI gene;Acc:...	[more]
roraa	5.796e-21	49.41	RAR related orphan receptor A [Source:NCBI gene;Ac...	[more]
roraa	1.242e-20	50.00	RAR related orphan receptor A [Source:NCBI gene;Ac...	[more]
roraa	1.276e-20	50.00	RAR related orphan receptor A [Source:NCBI gene;Ac...	[more]

BLAST of Nuclear receptor 2DBD gamma vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5


Match Name	E-value	Identity	Description
SMESG000008787.1	0.000e+0	99.71	SMESG000008787.1	[more]
SMESG000007787.1	3.504e-126	42.52	SMESG000007787.1	[more]
SMESG000020242.1	2.827e-57	52.88	SMESG000020242.1	[more]
SMESG000020242.1	3.179e-57	52.88	SMESG000020242.1	[more]
SMESG000020242.1	3.275e-57	52.88	SMESG000020242.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediteranean smed_20140614 Interproscan	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Sequences

The following sequences are available for this feature:

transcript sequence
protein sequence

transcript sequence

>SMED30012861 ID=SMED30012861|Name=Nuclear receptor 2DBD gamma|organism=Schmidtea mediterranea sexual|type=transcript|length=2209bp
TTACTAAAGACTTTAAGTCGATATACTAGTTAATGGACTATAATATACAA
ACATGTACAGACTGTATCCAAAATAACTTCGATTGGGAAACTCAACAACG
ATTTAACGAATTAAAATCCCAAACATCATCCTGGTTGTTCACTAATCAAA
TACCTGATCAAAGAAAATACGAAAATTTAAAATTTCCATGGTTTCTTAAA
GATTACCCAATAACAATGAACATGGACGAATACGATTACGCCCACCACCT
CAACACCTGGAACACTGATTGGAACTACATTGATAAATTCAAAACCTTAG
ACAGCTCGGAAAGTTTCGAGCCAGACAATATCGAAATGATTGCTAATCAT
AACAAATTCAATTCGCTTTCTGATGTCAAATGCGAAAATCTGGTTGCATC
AATGAAAGATTCGACTGAATTTTCAGATATTTCATCTGCAGTAGAATACA
AAGATGAGACTTCGGAAATTCCGGAACAACATTTGACTTTTACCAGTCCA
GAATCGGCGTTTTATGACTACCAGCAGAAAATGGAAAGTCAATTGTGCCA
AGTTTGTAGGGAATCGGCCGCTGGTTTTCATCATGGTGCATACGTATGTG
AAGCATGTAAGAAATTCTTTATGAGGCACAATCTGAATTCCACCAAATTT
ACTATTCCGTGCCCCACCGGCGGCCAGTGTGCTCAATTGAAGACTGGCAG
AATCAAATGCCAATCGTGCCGATTCAAAAAGTGCGTTTCGATCGGTATGG
CTCTTCAAAATCCAAACAATGGCAATTCAAAATTTGACATATCGAAAATA
CCCTGTCGAGTTTGTGGAGGAAAATCATCTGGATTTCATTTTGGAGCACT
TACATGTGAAGGATGCAAGGGATTTTTCCGAAGAACTGAAAGTACAAAAC
AACATTTGGCATGTATAACCGGAAACAACAATTGCTGTTTGACTGGTAGC
AGCAGTCGGAACCTTTGCAAAAGCTGCAGATTCAACCGATGTCTAGGAGT
GGGCATGTCGAAAAAAGGCAGTCGAATCGGTCGTCAGCCGAATGCAGTGA
AATTCCATTGTGTTCTGGAAATAATGCAAAGAACATGCGATCAATACGAT
GGTGCCAGTGAAAGTGCTAATGACAATTCAAAAAGAAAATCAGTTTTCCA
TAGAGCATATAGGAAAGTATGTCAACAGTCACAGAAAAATCTCATCAGAT
GTTCCCAAAATCATTTCGATAAATTGAAAAACGATTTGTCAATTTTTGAC
ACCAAAGACATTTTTTATTCGAATGAAGAAAAATTTATATTTGAAAGTTC
GCTTAAAGAAGCAACAAGGATCATTGAAATTTCAAAAGCGAATCTTCAAG
ATTTAAGCAGTAGGCAATTTTCGAAGAAATATTTGACTTTAAATGATTTA
TGGAACTATATGATGAACAATTTTGATGTTCACTCTGCGATGATAGTTCA
ATTTGTCAAAGCCATTCCAGGTTTTAACAAATTTGAACTGAAATCCCGCC
GGTCACTCGTTCAAGACGCCATGTATCCTATAATGTTGTTGAAACTTGCT
CAAGACTACAAGCCTGATGTAGATGAATATAACTATTTCGACTTTTCTCT
AATTGACAGAGAAGTGATTCTGAATAATTTCCAGTCATTTAAAAGGATCA
CCGATCATTTATTGTCAATAAGCCGTATGGTTCACTCACTCCAGTTATCC
AGTTACCCAATCAGTTTGTTATGTGTAACTGAGCTAATGAAAAATTATCA
TTTATTATCTGATGAAGAAGAAGGGAAACGGATTCTCAATCAAGCAAAAT
CCTTACTTTGGTTATTTTTAGAAAACAATGAAGTTGAAGACAACACCATT
GGAAATTTAACAAAACAAACGGAGATGTTAAATTTACACCCAAAAAATTA
TCAAAAGTATATAAAGATTTTTGAAGAAATGCCAAAACTTTTGTCAGAAA
TGAATTCAGAACATTTGAAAATAATTCAAGAGTTAAAATATTTACATCCG
GAGCTCTTGTTTCCGGAACTGTATATCGACATGTTCAATATACAAGACCC
ACAAACAGTGATTGATGCTAACCTATAACTTTCGTATATTTGTTTACATT
TTTTCACCTATAAATGAAATGTTGTCTTGTATTTTAGGGTTGTTTTAAAA
TATTCACAATACTAATTTGTTATTATTGAGTTTTAATTTTAATATAATTT
TATTATTCG

protein sequence of SMED30012861-orf-1

>SMED30012861-orf-1 ID=SMED30012861-orf-1|Name=SMED30012861-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=682bp
MDYNIQTCTDCIQNNFDWETQQRFNELKSQTSSWLFTNQIPDQRKYENLK
FPWFLKDYPITMNMDEYDYAHHLNTWNTDWNYIDKFKTLDSSESFEPDNI
EMIANHNKFNSLSDVKCENLVASMKDSTEFSDISSAVEYKDETSEIPEQH
LTFTSPESAFYDYQQKMESQLCQVCRESAAGFHHGAYVCEACKKFFMRHN
LNSTKFTIPCPTGGQCAQLKTGRIKCQSCRFKKCVSIGMALQNPNNGNSK
FDISKIPCRVCGGKSSGFHFGALTCEGCKGFFRRTESTKQHLACITGNNN
CCLTGSSSRNLCKSCRFNRCLGVGMSKKGSRIGRQPNAVKFHCVLEIMQR
TCDQYDGASESANDNSKRKSVFHRAYRKVCQQSQKNLIRCSQNHFDKLKN
DLSIFDTKDIFYSNEEKFIFESSLKEATRIIEISKANLQDLSSRQFSKKY
LTLNDLWNYMMNNFDVHSAMIVQFVKAIPGFNKFELKSRRSLVQDAMYPI
MLLKLAQDYKPDVDEYNYFDFSLIDREVILNNFQSFKRITDHLLSISRMV
HSLQLSSYPISLLCVTELMKNYHLLSDEEEGKRILNQAKSLLWLFLENNE
VEDNTIGNLTKQTEMLNLHPKNYQKYIKIFEEMPKLLSEMNSEHLKIIQE
LKYLHPELLFPELYIDMFNIQDPQTVIDANL*

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **cellular component**
Term	Definition
GO:0042025	host cell nucleus
GO:0005634	nucleus

Vocabulary: **Planarian Anatomy**
Term	Definition
PLANA:0000206	penis papilla

Vocabulary: **INTERPRO**
Term	Definition
IPR035500	NHR-like_dom_sf
IPR001628	Znf_hrmn_rcpt
IPR013088	Znf_NHR/GATA
IPR000536	Nucl_hrmn_rcpt_lig-bd

Vocabulary: **molecular function**
Term	Definition
GO:0043565	sequence-specific DNA binding
GO:0003700	transcription factor activity, sequence-specific DNA binding
GO:0008270	zinc ion binding
GO:0003677	DNA binding
GO:0046872	metal ion binding

Vocabulary: **biological process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated
GO:0043401	steroid hormone mediated signaling pathway
GO:0006351	transcription, DNA-templated

InterPro

Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 424..444
None	No IPR available	PANTHER	PTHR24082	NUCLEAR HORMONE RECEPTOR	coord: 249..658 coord: 153..240
None	No IPR available	CDD	cd07179	2DBD_NR_DBD2	coord: 258..333 e-value: 5.93332E-35 score: 124.922
None	No IPR available	SUPERFAMILY	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 170..247
None	No IPR available	SUPERFAMILY	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 255..344
IPR001628	Zinc finger, nuclear hormone receptor-type	PRINTS	PR00047	STROIDFINGER	coord: 309..317 score: 54.1 coord: 317..325 score: 49.71 coord: 274..289 score: 58.41 coord: 258..274 score: 50.08
IPR001628	Zinc finger, nuclear hormone receptor-type	SMART	SM00399	c4gold	coord: 169..242 e-value: 6.5E-17 score: 72.2 coord: 255..328 e-value: 1.4E-28 score: 110.9
IPR001628	Zinc finger, nuclear hormone receptor-type	PFAM	PF00105	zf-C4	coord: 257..327 e-value: 1.1E-21 score: 77.1 coord: 170..240 e-value: 1.9E-18 score: 66.7
IPR001628	Zinc finger, nuclear hormone receptor-type	PROSITE	PS51030	NUCLEAR_REC_DBD_2	coord: 169..246 score: 15.597
IPR001628	Zinc finger, nuclear hormone receptor-type	PROSITE	PS51030	NUCLEAR_REC_DBD_2	coord: 255..332 score: 17.759
IPR013088	Zinc finger, NHR/GATA-type	GENE3D	G3DSA:3.30.50.10		coord: 162..252 e-value: 2.4E-21 score: 77.7
IPR013088	Zinc finger, NHR/GATA-type	GENE3D	G3DSA:3.30.50.10		coord: 253..342 e-value: 8.5E-24 score: 85.4
IPR035500	Nuclear hormone receptor-like domain superfamily	GENE3D	G3DSA:1.10.565.10		coord: 417..642 e-value: 3.9E-14 score: 54.6
IPR035500	Nuclear hormone receptor-like domain superfamily	SUPERFAMILY	SSF48508	Nuclear receptor ligand-binding domain	coord: 311..669
IPR000536	Nuclear hormone receptor, ligand-binding domain	PROSITE	PS51843	NR_LBD	coord: 425..670 score: 15.374

Main menu

Nuclear receptor 2DBD gamma

Zeng et. al., 2018

▻ Overview

▻ Neoblast Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

Davies et. al., 2017

PAGE et. al., 2020

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 2

Owlery

blazegraph-runner