U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1

Overview
NameU2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1
Smed IDSMED30012802
Length (bp)1266
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1 (SMED30012802) t-SNE clustered cells

Violin plots show distribution of expression levels for U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1 (SMED30012802) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1 (SMED30012802) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1 (SMED30012802) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30012802

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 3

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30012802SMESG000076094.1 SMESG000036695.1 SmedASXL_013952SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
X2 cellSMED30012802SMESG000076094.1 SMESG000036695.1 SmedASXL_013952SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
nervous systemSMED30012802SMESG000076094.1 SMESG000036695.1 dd_Smed_v4_9455_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1 vs. Ensembl Human
Match: ZRSR2 (zinc finger CCCH-type, RNA binding motif and serine/arginine rich 2 [Source:HGNC Symbol;Acc:HGNC:23019])

HSP 1 Score: 145.976 bits (367), Expect = 2.563e-38
Identity = 74/176 (42.05%), Postives = 102/176 (57.95%), Query Frame = 1 
Query:  439 CHFFRKTGVCRFDLRCSRLHEMPLVSDTIVFMNMFTSNYMEMLMAGG-DPDFSLECDETELINEYEEFYTDIETEFSSFGRVLAIRTCRNAMRHLRGNVYVQYRNINDAVYAYSQLNGRYYAGTRLFARFVTLDSWRESICGLYFRGKCPKGGICNFMHVLLNKG----ESLRDLH 951
            C F+ KTG CRF  RCSR H  P  S T++  +MFT+  ME       DPD SLE  E E   ++ +FY D+  EF + G+V+  +   N   HLRGNVYVQY++  +   A S  NGR+YAG +L   F  +  W+ +ICGL+   +CP+G  CNF+HV  N      E+ RD++
Sbjct:  172 CPFYSKTGACRFGDRCSRKHNFPTSSPTLLIKSMFTTFGMEQCRRDDYDPDASLEYSEEETYQQFLDFYEDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSLFNGRWYAGRQLQCEFCPVTRWKMAICGLFEIQQCPRGKHCNFLHVFRNPNNEFWEANRDIY 347
[Close]
BLAST of U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1 vs. Ensembl Human
Match: U2AF1L4 (U2 small nuclear RNA auxiliary factor 1 like 4 [Source:HGNC Symbol;Acc:HGNC:23020])

HSP 1 Score: 108.612 bits (270), Expect = 8.353e-27
Identity = 58/169 (34.32%), Postives = 86/169 (50.89%), Query Frame = 1 
Query:  412 FLDQSKKEICHFFRKTGVCRFDLRCSRLHEMPLVSDTIVFMNMFTSNYMEMLMAGGDPDFSLECDETELINEYEEFYTDIETEFS-SFGRVLAIRTCRNAMRHLRGNVYVQYRNINDAVYAYSQLNGRYYAGTRLFARFVTLDSWRESICGLYFRGKCPKGGICNFMHV 915
            F  +  K  C F+ K GVCR   RCSRLH  P  S TIV +N++ +       A G         + E+   Y+ F+ ++ TE    +G +  +  C N   HL GNVYV++R   D   A ++L+ R++ G  +      +  +RES C  Y  G+C +GG CNFMH+
Sbjct:    9 FGTEKDKVNCSFYFKIGVCRHGDRCSRLHNKPTFSQTIVLLNLYRNPQNTAQTADGS---HCHVSDVEVQEHYDSFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDGERAVAELSNRWFNGQAVHGELSPVTDFRESCCRQYEMGECTRGGFCNFMHL 174
[Close]
BLAST of U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1 vs. Ensembl Human
Match: U2AF1 (U2 small nuclear RNA auxiliary factor 1 [Source:HGNC Symbol;Acc:HGNC:12453])

HSP 1 Score: 108.612 bits (270), Expect = 1.046e-26
Identity = 65/183 (35.52%), Postives = 92/183 (50.27%), Query Frame = 1 
Query:  412 FLDQSKKEICHFFRKTGVCRFDLRCSRLHEMPLVSDTIVFMNMFTSNYMEMLMAGGDPDFSLEC--DETELINEYEEFYTDIETEFS-SFGRVLAIRTCRNAMRHLRGNVYVQYRNINDAVYAYSQLNGRYYAGTRLFARFVTLDSWRESICGLYFRGKCPKGGICNFMHVLLNKGESLRDLH 951
            F  +  K  C F+ K G CR   RCSRLH  P  S TI  +N++ +       A G     L C   + E+   Y+EF+ ++ TE    +G V  +  C N   HL GNVYV++R   DA  A   LN R++ G  + A    +  +RE+ C  Y  G+C +GG CNFMH+     E  R+L+
Sbjct:    9 FGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQSADG-----LRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRRELY 186
[Close]
BLAST of U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1 vs. Ensembl Human
Match: U2AF1L5 (U2 small nuclear RNA auxiliary factor 1 like 5 [Source:HGNC Symbol;Acc:HGNC:51830])

HSP 1 Score: 108.612 bits (270), Expect = 1.046e-26
Identity = 65/183 (35.52%), Postives = 92/183 (50.27%), Query Frame = 1 
Query:  412 FLDQSKKEICHFFRKTGVCRFDLRCSRLHEMPLVSDTIVFMNMFTSNYMEMLMAGGDPDFSLEC--DETELINEYEEFYTDIETEFS-SFGRVLAIRTCRNAMRHLRGNVYVQYRNINDAVYAYSQLNGRYYAGTRLFARFVTLDSWRESICGLYFRGKCPKGGICNFMHVLLNKGESLRDLH 951
            F  +  K  C F+ K G CR   RCSRLH  P  S TI  +N++ +       A G     L C   + E+   Y+EF+ ++ TE    +G V  +  C N   HL GNVYV++R   DA  A   LN R++ G  + A    +  +RE+ C  Y  G+C +GG CNFMH+     E  R+L+
Sbjct:    9 FGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQSADG-----LRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRRELY 186
[Close]
BLAST of U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1 vs. Ensembl Human
Match: U2AF1 (U2 small nuclear RNA auxiliary factor 1 [Source:HGNC Symbol;Acc:HGNC:12453])

HSP 1 Score: 108.227 bits (269), Expect = 1.417e-26
Identity = 63/181 (34.81%), Postives = 90/181 (49.72%), Query Frame = 1 
Query:  412 FLDQSKKEICHFFRKTGVCRFDLRCSRLHEMPLVSDTIVFMNMFTSNYMEMLMAGGDPDFSLECDETELINEYEEFYTDIETEFSS-FGRVLAIRTCRNAMRHLRGNVYVQYRNINDAVYAYSQLNGRYYAGTRLFARFVTLDSWRESICGLYFRGKCPKGGICNFMHVLLNKGESLRDLH 951
            F  +  K  C F+ K G CR   RCSRLH  P  S TI+  N++ +       A G         + E+   Y+EF+ ++ TE    +G V  +  C N   HL GNVYV++R   DA  A   LN R++ G  + A    +  +RE+ C  Y  G+C +GG CNFMH+     E  R+L+
Sbjct:    9 FGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTILIQNIYRNPQNSAQTADGS---HCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRRELY 186
[Close]
BLAST of U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1 vs. Ensembl Celegans
Match: uaf-2 (U2AF splicing factor [Source:UniProtKB/TrEMBL;Acc:A0A0K3AXF6])

HSP 1 Score: 98.5969 bits (244), Expect = 5.032e-23
Identity = 54/160 (33.75%), Postives = 81/160 (50.62%), Query Frame = 1 
Query:  439 CHFFRKTGVCRFDLRCSRLHEMPLVSDTIVFMNMFTSNYMEMLMAGGDPDFSLECDETELINEYEEFYTDIETEFS-SFGRVLAIRTCRNAMRHLRGNVYVQYRNINDAVYAYSQLNGRYYAGTRLFARFVTLDSWRESICGLYFRGKCPKGGICNFMHV 915
            C FF KTG CR   +CSR H  P  S T+V  N + +  +++  A          D+ +    +++FY ++  E    +G V  I  C N   H+ GNVYV++    DA  A + LN R++ G  ++A    +  +RES C  +    C KGG CNFMH+
Sbjct:   26 CSFFFKTGACRHGDKCSRAHHTPTFSPTVVLKNFYHNPVVDVRQADAFDKVGKRNDQEQRY--FDDFYEEVFVEMERKYGEVEEINVCENIGEHMVGNVYVKFMKEEDAEKAKNDLNNRWFNGQPIYAELCPVTDFRESRCRQHEVTTCSKGGFCNFMHL 183
[Close]
BLAST of U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1 vs. Ensembl Celegans
Match: uaf-2 (U2AF splicing factor [Source:UniProtKB/TrEMBL;Acc:A0A0K3AXF6])

HSP 1 Score: 98.5969 bits (244), Expect = 5.032e-23
Identity = 54/160 (33.75%), Postives = 81/160 (50.62%), Query Frame = 1 
Query:  439 CHFFRKTGVCRFDLRCSRLHEMPLVSDTIVFMNMFTSNYMEMLMAGGDPDFSLECDETELINEYEEFYTDIETEFS-SFGRVLAIRTCRNAMRHLRGNVYVQYRNINDAVYAYSQLNGRYYAGTRLFARFVTLDSWRESICGLYFRGKCPKGGICNFMHV 915
            C FF KTG CR   +CSR H  P  S T+V  N + +  +++  A          D+ +    +++FY ++  E    +G V  I  C N   H+ GNVYV++    DA  A + LN R++ G  ++A    +  +RES C  +    C KGG CNFMH+
Sbjct:   26 CSFFFKTGACRHGDKCSRAHHTPTFSPTVVLKNFYHNPVVDVRQADAFDKVGKRNDQEQRY--FDDFYEEVFVEMERKYGEVEEINVCENIGEHMVGNVYVKFMKEEDAEKAKNDLNNRWFNGQPIYAELCPVTDFRESRCRQHEVTTCSKGGFCNFMHL 183
[Close]
BLAST of U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1 vs. Ensembl Fly
Match: CG3294 (gene:FBgn0031628 transcript:FBtr0077381)

HSP 1 Score: 128.257 bits (321), Expect = 1.660e-32
Identity = 58/166 (34.94%), Postives = 91/166 (54.82%), Query Frame = 1 
Query:  436 ICHFFRKTGVCRFDLRCSRLHEMPLVSDTIVFMNMFTSNYMEMLMAG---GDPDFSLECDETELINEYEEFYTDIETEFSSFGRVLAIRTCRNAMRHLRGNVYVQYRNINDAVYAYSQLNGRYYAGTRLFARFVTLDSWRESICGLYFRGKCPKGGICNFMHVLLN 924
             C FF +T  CR+   C+  H  P++   ++  + F  + ++           +  LE  E +L ++Y+EF+ D+  E   FG ++  RT RN + HLRG+V+V+Y N   A+ A++ L GRYYA  RL   F  L +WR ++CGL    KCPKG  C ++H+  N
Sbjct:  169 ACEFFSRTNCCRYGHACTFNHRRPMLGRILLIRHFFNHSMLQKRCTHKEYASAEEHLELTEQDLRHDYDEFFNDVVEELRKFGTIVNFRTVRNTLEHLRGHVFVEYTNERSALRAFTNLQGRYYASKRLNVEFSNLRTWRGAVCGLSLTRKCPKGNDCGYLHLFGN 334
[Close]
BLAST of U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1 vs. Ensembl Fly
Match: U2af38 (gene:FBgn0017457 transcript:FBtr0333408)

HSP 1 Score: 105.531 bits (262), Expect = 1.086e-25
Identity = 56/169 (33.14%), Postives = 87/169 (51.48%), Query Frame = 1 
Query:  412 FLDQSKKEICHFFRKTGVCRFDLRCSRLHEMPLVSDTIVFMNMFTSNYMEMLMAGGDPDFSLECDETELINEYEEFYTDIETEF-SSFGRVLAIRTCRNAMRHLRGNVYVQYRNINDAVYAYSQLNGRYYAGTRLFARFVTLDSWRESICGLYFRGKCPKGGICNFMHV 915
            F  +  K  C F+ K G CR   RCSR+H  P  S T++  N++ +       A G    +   DE E+   Y+ F+ D+  E    +G +  +  C N   HL GNVY+++RN  DA  A + LN R++ G  +++    +  +RE+ C  Y  G+C + G CNFMH+
Sbjct:    9 FGTEKDKVNCSFYFKIGACRHGDRCSRIHNKPTFSQTVLLQNLYVNPQNSAKSADGSHLVANVSDE-EMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRNEADAEKAANDLNNRWFGGRPVYSELSPVTDFREACCRQYEMGECTRSGFCNFMHL 176
[Close]
BLAST of U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1 vs. Ensembl Fly
Match: U2af38 (gene:FBgn0017457 transcript:FBtr0078133)

HSP 1 Score: 105.531 bits (262), Expect = 1.086e-25
Identity = 56/169 (33.14%), Postives = 87/169 (51.48%), Query Frame = 1 
Query:  412 FLDQSKKEICHFFRKTGVCRFDLRCSRLHEMPLVSDTIVFMNMFTSNYMEMLMAGGDPDFSLECDETELINEYEEFYTDIETEF-SSFGRVLAIRTCRNAMRHLRGNVYVQYRNINDAVYAYSQLNGRYYAGTRLFARFVTLDSWRESICGLYFRGKCPKGGICNFMHV 915
            F  +  K  C F+ K G CR   RCSR+H  P  S T++  N++ +       A G    +   DE E+   Y+ F+ D+  E    +G +  +  C N   HL GNVY+++RN  DA  A + LN R++ G  +++    +  +RE+ C  Y  G+C + G CNFMH+
Sbjct:    9 FGTEKDKVNCSFYFKIGACRHGDRCSRIHNKPTFSQTVLLQNLYVNPQNSAKSADGSHLVANVSDE-EMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRNEADAEKAANDLNNRWFGGRPVYSELSPVTDFREACCRQYEMGECTRSGFCNFMHL 176
[Close]
BLAST of U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1 vs. Ensembl Fly
Match: CG3294 (gene:FBgn0031628 transcript:FBtr0077382)

HSP 1 Score: 105.916 bits (263), Expect = 2.074e-25
Identity = 49/144 (34.03%), Postives = 80/144 (55.56%), Query Frame = 1 
Query:  439 CHFFRKTGVCRFDLRCSRLHEMPLVSDTIVFMNMFTSNYMEMLMAGGD---PDFSLECDETELINEYEEFYTDIETEFSSFGRVLAIRTCRNAMRHLRGNVYVQYRNINDAVYAYSQLNGRYYAGTRLFARFVTLDSWRESICG 861
            C FF +T  CR+   C+  H  P++   ++  + F  + ++      +    +  LE  E +L ++Y+EF+ D+  E   FG ++  RT RN + HLRG+V+V+Y N   A+ A++ L GRYYA  RL   F  L +WR ++CG
Sbjct:  170 CEFFSRTNCCRYGHACTFNHRRPMLGRILLIRHFFNHSMLQKRCTHKEYASAEEHLELTEQDLRHDYDEFFNDVVEELRKFGTIVNFRTVRNTLEHLRGHVFVEYTNERSALRAFTNLQGRYYASKRLNVEFSNLRTWRGAVCG 313
[Close]
BLAST of U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1 vs. Ensembl Zebrafish
Match: zrsr2 (zinc finger (CCCH type), RNA-binding motif and serine/arginine rich 2 [Source:ZFIN;Acc:ZDB-GENE-030131-1495])

HSP 1 Score: 154.836 bits (390), Expect = 9.804e-42
Identity = 85/195 (43.59%), Postives = 108/195 (55.38%), Query Frame = 1 
Query:  385 PYRNPFEP-EFLDQSKKEICHFFRKTGVCRFDLRCSRLHEMPLVSDTIVFMNMFTSNYMEMLMAGG-DPDFSLECDETELINEYEEFYTDIETEFSSFGRVLAIRTCRNAMRHLRGNVYVQYRNINDAVYAYSQLNGRYYAGTRLFARFVTLDSWRESICGLYFRGKCPKGGICNFMHVLLNKG----ESLRDLH 951
            P++NP  P ++  +  K  C FF KTG CRF  RCSR H+ P  S T++   MF S  ME       D D SLE  E EL  ++ +FY D   EF + GRV+  +   N   HLRGNVYVQY        A+   NGR+YAG +L   F  +  W+ +ICGL+ R KCPKG  CNF+HV  N      E+ RDLH
Sbjct:   14 PWKNPDAPKDYGTEKDKANCPFFLKTGACRFGDRCSRKHDHPASSCTLMVRGMFVSFGMEQSRRDDYDTDASLEYSEEELHQQFLDFYEDALPEFKNAGRVVQFKVSCNFEPHLRGNVYVQYETEEQCKEAFVMFNGRWYAGRQLQCEFSPVTRWKTAICGLFDRRKCPKGKHCNFLHVFRNPDNEFWEADRDLH 208
[Close]
BLAST of U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1 vs. Ensembl Zebrafish
Match: zrsr2 (zinc finger (CCCH type), RNA-binding motif and serine/arginine rich 2 [Source:ZFIN;Acc:ZDB-GENE-030131-1495])

HSP 1 Score: 156.762 bits (395), Expect = 1.295e-41
Identity = 85/195 (43.59%), Postives = 108/195 (55.38%), Query Frame = 1 
Query:  385 PYRNPFEP-EFLDQSKKEICHFFRKTGVCRFDLRCSRLHEMPLVSDTIVFMNMFTSNYMEMLMAGG-DPDFSLECDETELINEYEEFYTDIETEFSSFGRVLAIRTCRNAMRHLRGNVYVQYRNINDAVYAYSQLNGRYYAGTRLFARFVTLDSWRESICGLYFRGKCPKGGICNFMHVLLNKG----ESLRDLH 951
            P++NP  P ++  +  K  C FF KTG CRF  RCSR H+ P  S T++   MF S  ME       D D SLE  E EL  ++ +FY D   EF + GRV+  +   N   HLRGNVYVQY        A+   NGR+YAG +L   F  +  W+ +ICGL+ R KCPKG  CNF+HV  N      E+ RDLH
Sbjct:  166 PWKNPDAPKDYGTEKDKANCPFFLKTGACRFGDRCSRKHDHPASSCTLMVRGMFVSFGMEQSRRDDYDTDASLEYSEEELHQQFLDFYEDALPEFKNAGRVVQFKVSCNFEPHLRGNVYVQYETEEQCKEAFVMFNGRWYAGRQLQCEFSPVTRWKTAICGLFDRRKCPKGKHCNFLHVFRNPDNEFWEADRDLH 360
[Close]
BLAST of U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1 vs. Ensembl Zebrafish
Match: CR450764.13 (zinc finger (CCCH type), RNA-binding motif and serine/arginine rich 2 [Source:NCBI gene;Acc:100005490])

HSP 1 Score: 119.783 bits (299), Expect = 3.589e-31
Identity = 67/161 (41.61%), Postives = 87/161 (54.04%), Query Frame = 1 
Query:  385 PYRNPFEP-EFLDQSKKEICHFFRKTGVCRFDLRCSRLHEMPLVSDTIVFMNMFTSNYMEMLMAGG-DPDFSLECDETELINEYEEFYTDIETEFSSFGRVLAIRTCRNAMRHLRGNVYVQYRNINDAVYAYSQLNGRYYAGTRLFARFVTLDSWRESICG 861
            P++NP  P ++  +  K  C FF KTG CRF  RCSR H+ P  S T++   MF S  ME       D D SLE  E EL  ++ +FY D   EF + GRV+  +   N   HLRGNVYVQY        A+   NGR+YAG +L   F  +  W+ +ICG
Sbjct:   14 PWKNPDAPKDYGTEKDKANCPFFLKTGACRFGDRCSRKHDHPASSCTLMVRGMFVSFGMEQSRRDDYDTDASLEYSEEELHQQFLDFYEDALPEFKNAGRVVQFKVSCNFEPHLRGNVYVQYETEEQCKEAFVMFNGRWYAGRQLQCEFSPVTRWKTAICG 174
[Close]
BLAST of U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1 vs. Ensembl Zebrafish
Match: u2af1 (U2 small nuclear RNA auxiliary factor 1 [Source:ZFIN;Acc:ZDB-GENE-020419-1])

HSP 1 Score: 108.612 bits (270), Expect = 1.051e-26
Identity = 64/181 (35.36%), Postives = 91/181 (50.28%), Query Frame = 1 
Query:  412 FLDQSKKEICHFFRKTGVCRFDLRCSRLHEMPLVSDTIVFMNMFTSNYMEMLMAGGDPDFSLECDETELINEYEEFYTDIETEFS-SFGRVLAIRTCRNAMRHLRGNVYVQYRNINDAVYAYSQLNGRYYAGTRLFARFVTLDSWRESICGLYFRGKCPKGGICNFMHVLLNKGESLRDLH 951
            F  +  K  C F+ K G CR   RCSRLH  P  S TI  +N++ +       A G    S    + E+   Y+EF+ ++ TE    +G V  +  C N   HL GNVYV++R   DA  A   LN R++ G  + A    +  +RE+ C  Y  G+C +GG CNFMH+     E  R+L+
Sbjct:    9 FGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNTAQSADGLNAVS----DVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVINLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRRELY 185
[Close]
BLAST of U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1 vs. Ensembl Xenopus
Match: scgn (secretagogin, EF-hand calcium binding protein [Source:Xenbase;Acc:XB-GENE-988344])

HSP 1 Score: 152.91 bits (385), Expect = 6.402e-42
Identity = 79/194 (40.72%), Postives = 111/194 (57.22%), Query Frame = 1 
Query:  388 YRNPFEPE-FLDQSKKEICHFFRKTGVCRFDLRCSRLHEMPLVSDTIVFMNMFTSNYMEMLMAGG-DPDFSLECDETELINEYEEFYTDIETEFSSFGRVLAIRTCRNAMRHLRGNVYVQYRNINDAVYAYSQLNGRYYAGTRLFARFVTLDSWRESICGLYFRGKCPKGGICNFMHVLLNKG----ESLRDLH 951
            + NP  PE +  +  +  C F+ KTG CRF  RCSR H  P  S T++  +MF +  ME       D D SLE  E E+  ++ EFY D+  EF + G+V+  +   N   HLRGNVYVQY+   + + A++Q NGR+YA  +L   F  +  W+ +ICGL+ R KCP+G  CNF+HV  N      E+ RD+H
Sbjct:  130 WHNPEAPEGYGTEKDRANCPFYLKTGACRFGERCSRKHNYPSSSQTLLIRSMFVTFGMEQCRRDDYDTDASLEYGEEEIYQQFLEFYADVVPEFKNAGKVVQFKVSCNFEPHLRGNVYVQYQTEEECLKAFTQFNGRWYASRQLQCEFSPVTRWKTAICGLFERQKCPRGKHCNFLHVFKNPNNEFWEANRDIH 323
[Close]
BLAST of U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1 vs. Ensembl Xenopus
Match: scgn (secretagogin, EF-hand calcium binding protein [Source:Xenbase;Acc:XB-GENE-988344])

HSP 1 Score: 152.91 bits (385), Expect = 1.221e-41
Identity = 79/194 (40.72%), Postives = 111/194 (57.22%), Query Frame = 1 
Query:  388 YRNPFEPE-FLDQSKKEICHFFRKTGVCRFDLRCSRLHEMPLVSDTIVFMNMFTSNYMEMLMAGG-DPDFSLECDETELINEYEEFYTDIETEFSSFGRVLAIRTCRNAMRHLRGNVYVQYRNINDAVYAYSQLNGRYYAGTRLFARFVTLDSWRESICGLYFRGKCPKGGICNFMHVLLNKG----ESLRDLH 951
            + NP  PE +  +  +  C F+ KTG CRF  RCSR H  P  S T++  +MF +  ME       D D SLE  E E+  ++ EFY D+  EF + G+V+  +   N   HLRGNVYVQY+   + + A++Q NGR+YA  +L   F  +  W+ +ICGL+ R KCP+G  CNF+HV  N      E+ RD+H
Sbjct:  130 WHNPEAPEGYGTEKDRANCPFYLKTGACRFGERCSRKHNYPSSSQTLLIRSMFVTFGMEQCRRDDYDTDASLEYGEEEIYQQFLEFYADVVPEFKNAGKVVQFKVSCNFEPHLRGNVYVQYQTEEECLKAFTQFNGRWYASRQLQCEFSPVTRWKTAICGLFERQKCPRGKHCNFLHVFKNPNNEFWEANRDIH 323
[Close]
BLAST of U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1 vs. Ensembl Xenopus
Match: scgn (secretagogin, EF-hand calcium binding protein [Source:Xenbase;Acc:XB-GENE-988344])

HSP 1 Score: 153.295 bits (386), Expect = 1.281e-41
Identity = 79/194 (40.72%), Postives = 111/194 (57.22%), Query Frame = 1 
Query:  388 YRNPFEPE-FLDQSKKEICHFFRKTGVCRFDLRCSRLHEMPLVSDTIVFMNMFTSNYMEMLMAGG-DPDFSLECDETELINEYEEFYTDIETEFSSFGRVLAIRTCRNAMRHLRGNVYVQYRNINDAVYAYSQLNGRYYAGTRLFARFVTLDSWRESICGLYFRGKCPKGGICNFMHVLLNKG----ESLRDLH 951
            + NP  PE +  +  +  C F+ KTG CRF  RCSR H  P  S T++  +MF +  ME       D D SLE  E E+  ++ EFY D+  EF + G+V+  +   N   HLRGNVYVQY+   + + A++Q NGR+YA  +L   F  +  W+ +ICGL+ R KCP+G  CNF+HV  N      E+ RD+H
Sbjct:  130 WHNPEAPEGYGTEKDRANCPFYLKTGACRFGERCSRKHNYPSSSQTLLIRSMFVTFGMEQCRRDDYDTDASLEYGEEEIYQQFLEFYADVVPEFKNAGKVVQFKVSCNFEPHLRGNVYVQYQTEEECLKAFTQFNGRWYASRQLQCEFSPVTRWKTAICGLFERQKCPRGKHCNFLHVFKNPNNEFWEANRDIH 323
[Close]
BLAST of U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1 vs. Ensembl Xenopus
Match: scgn (secretagogin, EF-hand calcium binding protein [Source:Xenbase;Acc:XB-GENE-988344])

HSP 1 Score: 154.066 bits (388), Expect = 3.984e-41
Identity = 79/194 (40.72%), Postives = 111/194 (57.22%), Query Frame = 1 
Query:  388 YRNPFEPE-FLDQSKKEICHFFRKTGVCRFDLRCSRLHEMPLVSDTIVFMNMFTSNYMEMLMAGG-DPDFSLECDETELINEYEEFYTDIETEFSSFGRVLAIRTCRNAMRHLRGNVYVQYRNINDAVYAYSQLNGRYYAGTRLFARFVTLDSWRESICGLYFRGKCPKGGICNFMHVLLNKG----ESLRDLH 951
            + NP  PE +  +  +  C F+ KTG CRF  RCSR H  P  S T++  +MF +  ME       D D SLE  E E+  ++ EFY D+  EF + G+V+  +   N   HLRGNVYVQY+   + + A++Q NGR+YA  +L   F  +  W+ +ICGL+ R KCP+G  CNF+HV  N      E+ RD+H
Sbjct:  130 WHNPEAPEGYGTEKDRANCPFYLKTGACRFGERCSRKHNYPSSSQTLLIRSMFVTFGMEQCRRDDYDTDASLEYGEEEIYQQFLEFYADVVPEFKNAGKVVQFKVSCNFEPHLRGNVYVQYQTEEECLKAFTQFNGRWYASRQLQCEFSPVTRWKTAICGLFERQKCPRGKHCNFLHVFKNPNNEFWEANRDIH 323
[Close]
BLAST of U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1 vs. Ensembl Xenopus
Match: scgn (secretagogin, EF-hand calcium binding protein [Source:Xenbase;Acc:XB-GENE-988344])

HSP 1 Score: 154.066 bits (388), Expect = 4.777e-41
Identity = 79/194 (40.72%), Postives = 111/194 (57.22%), Query Frame = 1 
Query:  388 YRNPFEPE-FLDQSKKEICHFFRKTGVCRFDLRCSRLHEMPLVSDTIVFMNMFTSNYMEMLMAGG-DPDFSLECDETELINEYEEFYTDIETEFSSFGRVLAIRTCRNAMRHLRGNVYVQYRNINDAVYAYSQLNGRYYAGTRLFARFVTLDSWRESICGLYFRGKCPKGGICNFMHVLLNKG----ESLRDLH 951
            + NP  PE +  +  +  C F+ KTG CRF  RCSR H  P  S T++  +MF +  ME       D D SLE  E E+  ++ EFY D+  EF + G+V+  +   N   HLRGNVYVQY+   + + A++Q NGR+YA  +L   F  +  W+ +ICGL+ R KCP+G  CNF+HV  N      E+ RD+H
Sbjct:  143 WHNPEAPEGYGTEKDRANCPFYLKTGACRFGERCSRKHNYPSSSQTLLIRSMFVTFGMEQCRRDDYDTDASLEYGEEEIYQQFLEFYADVVPEFKNAGKVVQFKVSCNFEPHLRGNVYVQYQTEEECLKAFTQFNGRWYASRQLQCEFSPVTRWKTAICGLFERQKCPRGKHCNFLHVFKNPNNEFWEANRDIH 336
[Close]
BLAST of U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1 vs. Ensembl Mouse
Match: Zrsr2 (zinc finger (CCCH type), RNA binding motif and serine/arginine rich 2 [Source:MGI Symbol;Acc:MGI:103287])

HSP 1 Score: 153.68 bits (387), Expect = 5.192e-41
Identity = 78/182 (42.86%), Postives = 103/182 (56.59%), Query Frame = 1 
Query:  439 CHFFRKTGVCRFDLRCSRLHEMPLVSDTIVFMNMFTSNYMEMLMAGG-DPDFSLECDETELINEYEEFYTDIETEFSSFGRVLAIRTCRNAMRHLRGNVYVQYRNINDAVYAYSQLNGRYYAGTRLFARFVTLDSWRESICGLYFRGKCPKGGICNFMHVLLNKGESLRDLHHFLRQSRSHT 981
            C F+ KTG CRF  RCSR H  P  S T++   MFT+  ME       DPD SLE  E E+  ++ +FY D+  EF S G+V+  +   N   HLRGNVYVQY++  D   A+S  NGR+YAG +L   F  +  W+ +ICGL+   +CP+G  CNF+HV  N     RD +  L  S   T
Sbjct:  176 CPFYSKTGACRFGDRCSRKHNFPTSSPTLLIKGMFTTFGMEQCRRDDYDPDSSLEFSEEEIYQQFLDFYYDVLPEFKSVGKVIQFKVSCNLEPHLRGNVYVQYQSEEDCQAAFSVFNGRWYAGRQLQCEFCPVTRWKMAICGLFEVQQCPRGKHCNFLHVFRNPNNEYRDANRDLYPSPDWT 357
[Close]
BLAST of U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1 vs. Ensembl Mouse
Match: Zrsr1 (zinc finger (CCCH type), RNA binding motif and serine/arginine rich 1 [Source:MGI Symbol;Acc:MGI:98885])

HSP 1 Score: 149.443 bits (376), Expect = 3.125e-40
Identity = 77/188 (40.96%), Postives = 107/188 (56.91%), Query Frame = 1 
Query:  388 YRNPFEPEFLDQSK-KEICHFFRKTGVCRFDLRCSRLHEMPLVSDTIVFMNMFTSNYMEMLMAGG-DPDFSLECDETELINEYEEFYTDIETEFSSFGRVLAIRTCRNAMRHLRGNVYVQYRNINDAVYAYSQLNGRYYAGTRLFARFVTLDSWRESICGLYFRGKCPKGGICNFMHVLLNKGESLRD 945
            ++NP  P+ L   K +  C F+ KTG CRF  RCSR H+ P  S T++  +MFT+  ME       D D +LE  E E   ++ +FY D+  EF + G+V+  +   N   HLRGNVYVQY++  +   A S  NGR+YAG +L   F  +  W+ +ICGL+   KCPKG  CNF+HV  N     R+
Sbjct:  145 WQNPEPPKDLRLEKYRPSCPFYNKTGACRFGNRCSRKHDFPTSSPTLLVKSMFTTFGMEQCRRDDYDSDANLEYSEEETYQQFLDFYHDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSLFNGRWYAGRQLQCEFCPVTRWKVAICGLFEMQKCPKGKHCNFLHVFRNPNNEFRE 332
[Close]
BLAST of U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1 vs. Ensembl Mouse
Match: Gm49396 (predicted gene, 49396 [Source:MGI Symbol;Acc:MGI:6121629])

HSP 1 Score: 112.079 bits (279), Expect = 2.588e-28
Identity = 60/169 (35.50%), Postives = 87/169 (51.48%), Query Frame = 1 
Query:  412 FLDQSKKEICHFFRKTGVCRFDLRCSRLHEMPLVSDTIVFMNMFTSNYMEMLMAGGDPDFSLECDETELINEYEEFYTDIETEFS-SFGRVLAIRTCRNAMRHLRGNVYVQYRNINDAVYAYSQLNGRYYAGTRLFARFVTLDSWRESICGLYFRGKCPKGGICNFMHV 915
            F  +  K  C F+ K G CR   RCSRLH  P  S TIV +N++ +       A G         + E+   Y+ F+ ++ TE    +G +  +  C N   HL GNVYV++R   DA  A ++LN R++ G  + A    +  +RES C  Y  G+C +GG CNFMH+
Sbjct:    9 FGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIVLLNLYRNPQNTAQTADGS---HCHVSDVEVQEHYDNFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDAERAVAELNNRWFNGQAVHAELSPVTDFRESCCRQYEMGECTRGGFCNFMHL 174
[Close]
BLAST of U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1 vs. Ensembl Mouse
Match: Gm49396 (predicted gene, 49396 [Source:MGI Symbol;Acc:MGI:6121629])

HSP 1 Score: 112.079 bits (279), Expect = 2.588e-28
Identity = 60/169 (35.50%), Postives = 87/169 (51.48%), Query Frame = 1 
Query:  412 FLDQSKKEICHFFRKTGVCRFDLRCSRLHEMPLVSDTIVFMNMFTSNYMEMLMAGGDPDFSLECDETELINEYEEFYTDIETEFS-SFGRVLAIRTCRNAMRHLRGNVYVQYRNINDAVYAYSQLNGRYYAGTRLFARFVTLDSWRESICGLYFRGKCPKGGICNFMHV 915
            F  +  K  C F+ K G CR   RCSRLH  P  S TIV +N++ +       A G         + E+   Y+ F+ ++ TE    +G +  +  C N   HL GNVYV++R   DA  A ++LN R++ G  + A    +  +RES C  Y  G+C +GG CNFMH+
Sbjct:    9 FGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIVLLNLYRNPQNTAQTADGS---HCHVSDVEVQEHYDNFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDAERAVAELNNRWFNGQAVHAELSPVTDFRESCCRQYEMGECTRGGFCNFMHL 174
[Close]
BLAST of U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1 vs. Ensembl Mouse
Match: U2af1l4 (U2 small nuclear RNA auxiliary factor 1-like 4 [Source:MGI Symbol;Acc:MGI:2678374])

HSP 1 Score: 112.079 bits (279), Expect = 2.588e-28
Identity = 60/169 (35.50%), Postives = 87/169 (51.48%), Query Frame = 1 
Query:  412 FLDQSKKEICHFFRKTGVCRFDLRCSRLHEMPLVSDTIVFMNMFTSNYMEMLMAGGDPDFSLECDETELINEYEEFYTDIETEFS-SFGRVLAIRTCRNAMRHLRGNVYVQYRNINDAVYAYSQLNGRYYAGTRLFARFVTLDSWRESICGLYFRGKCPKGGICNFMHV 915
            F  +  K  C F+ K G CR   RCSRLH  P  S TIV +N++ +       A G         + E+   Y+ F+ ++ TE    +G +  +  C N   HL GNVYV++R   DA  A ++LN R++ G  + A    +  +RES C  Y  G+C +GG CNFMH+
Sbjct:    9 FGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIVLLNLYRNPQNTAQTADGS---HCHVSDVEVQEHYDNFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDAERAVAELNNRWFNGQAVHAELSPVTDFRESCCRQYEMGECTRGGFCNFMHL 174
[Close]
BLAST of U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1 vs. UniProt/SwissProt
Match: sp|Q6YVX9|C3H16_ORYSJ (Zinc finger CCCH domain-containing protein 16 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0557500 PE=2 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 1.147e-40
Identity = 74/173 (42.77%), Postives = 104/173 (60.12%), Query Frame = 1 
Query:  421 QSKKEICHFFRKTGVCRFDLRCSRLHEMPLVSDTIVFMNMFTSNYMEMLMAGGDPDFSLECDETELINEYEEFYTDIETEFSSFGRVLAIRTCRNAMRHLRGNVYVQYRNINDAVYAYSQLNGRYYAGTRLFARFVTLDSWRESICGLYFRGK---CPKGGICNFMHVLLNKG 930
            Q  K  C F  KTG CRF +RCSR+H  P  S T++  NM++   + +     + D  LEC + E+   YEEFY D+ TEF  FG ++  + CRN   HLRGNVYV Y++++ A+ AYS +NGRY+AG ++   FV +  W+ +ICG Y R +   C +G  CNF+H   N G
Sbjct:  163 QQDKAHCPFHLKTGACRFGVRCSRVHFYPDKSCTLLMRNMYSGPGLAL-----EQDEGLECTDEEIEQSYEEFYEDVHTEFLKFGELVNFKVCRNGSLHLRGNVYVHYKSLDSALIAYSSMNGRYFAGKQITCEFVAVTRWKVAICGEYMRSRFKTCSRGIACNFIHCFRNPG 330
[Close]
BLAST of U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1 vs. UniProt/SwissProt
Match: sp|Q62377|U2AFM_MOUSE (U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 2 OS=Mus musculus OX=10090 GN=Zrsr2 PE=1 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.988e-40
Identity = 78/182 (42.86%), Postives = 103/182 (56.59%), Query Frame = 1 
Query:  439 CHFFRKTGVCRFDLRCSRLHEMPLVSDTIVFMNMFTSNYMEMLMAGG-DPDFSLECDETELINEYEEFYTDIETEFSSFGRVLAIRTCRNAMRHLRGNVYVQYRNINDAVYAYSQLNGRYYAGTRLFARFVTLDSWRESICGLYFRGKCPKGGICNFMHVLLNKGESLRDLHHFLRQSRSHT 981
            C F+ KTG CRF  RCSR H  P  S T++   MFT+  ME       DPD SLE  E E+  ++ +FY D+  EF S G+V+  +   N   HLRGNVYVQY++  D   A+S  NGR+YAG +L   F  +  W+ +ICGL+   +CP+G  CNF+HV  N     RD +  L  S   T
Sbjct:  176 CPFYSKTGACRFGDRCSRKHNFPTSSPTLLIKGMFTTFGMEQCRRDDYDPDSSLEFSEEEIYQQFLDFYYDVLPEFKSVGKVIQFKVSCNLEPHLRGNVYVQYQSEEDCQAAFSVFNGRWYAGRQLQCEFCPVTRWKMAICGLFEVQQCPRGKHCNFLHVFRNPNNEYRDANRDLYPSPDWT 357
[Close]
BLAST of U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1 vs. UniProt/SwissProt
Match: sp|Q64707|U2AFL_MOUSE (U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1 OS=Mus musculus OX=10090 GN=Zrsr1 PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.186e-39
Identity = 77/188 (40.96%), Postives = 107/188 (56.91%), Query Frame = 1 
Query:  388 YRNPFEPEFLDQSK-KEICHFFRKTGVCRFDLRCSRLHEMPLVSDTIVFMNMFTSNYMEMLMAGG-DPDFSLECDETELINEYEEFYTDIETEFSSFGRVLAIRTCRNAMRHLRGNVYVQYRNINDAVYAYSQLNGRYYAGTRLFARFVTLDSWRESICGLYFRGKCPKGGICNFMHVLLNKGESLRD 945
            ++NP  P+ L   K +  C F+ KTG CRF  RCSR H+ P  S T++  +MFT+  ME       D D +LE  E E   ++ +FY D+  EF + G+V+  +   N   HLRGNVYVQY++  +   A S  NGR+YAG +L   F  +  W+ +ICGL+   KCPKG  CNF+HV  N     R+
Sbjct:  145 WQNPEPPKDLRLEKYRPSCPFYNKTGACRFGNRCSRKHDFPTSSPTLLVKSMFTTFGMEQCRRDDYDSDANLEYSEEETYQQFLDFYHDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSLFNGRWYAGRQLQCEFCPVTRWKVAICGLFEMQKCPKGKHCNFLHVFRNPNNEFRE 332
[Close]
BLAST of U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1 vs. UniProt/SwissProt
Match: sp|Q15696|U2AFM_HUMAN (U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 2 OS=Homo sapiens OX=9606 GN=ZRSR2 PE=1 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 1.231e-37
Identity = 74/176 (42.05%), Postives = 102/176 (57.95%), Query Frame = 1 
Query:  439 CHFFRKTGVCRFDLRCSRLHEMPLVSDTIVFMNMFTSNYMEMLMAGG-DPDFSLECDETELINEYEEFYTDIETEFSSFGRVLAIRTCRNAMRHLRGNVYVQYRNINDAVYAYSQLNGRYYAGTRLFARFVTLDSWRESICGLYFRGKCPKGGICNFMHVLLNKG----ESLRDLH 951
            C F+ KTG CRF  RCSR H  P  S T++  +MFT+  ME       DPD SLE  E E   ++ +FY D+  EF + G+V+  +   N   HLRGNVYVQY++  +   A S  NGR+YAG +L   F  +  W+ +ICGL+   +CP+G  CNF+HV  N      E+ RD++
Sbjct:  172 CPFYSKTGACRFGDRCSRKHNFPTSSPTLLIKSMFTTFGMEQCRRDDYDPDASLEYSEEETYQQFLDFYEDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSLFNGRWYAGRQLQCEFCPVTRWKMAICGLFEIQQCPRGKHCNFLHVFRNPNNEFWEANRDIY 347
[Close]
BLAST of U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1 vs. UniProt/SwissProt
Match: sp|Q15695|U2AFL_HUMAN (Putative U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1 OS=Homo sapiens OX=9606 GN=ZRSR2P1 PE=5 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 1.316e-37
Identity = 74/176 (42.05%), Postives = 102/176 (57.95%), Query Frame = 1 
Query:  439 CHFFRKTGVCRFDLRCSRLHEMPLVSDTIVFMNMFTSNYMEMLMAGG-DPDFSLECDETELINEYEEFYTDIETEFSSFGRVLAIRTCRNAMRHLRGNVYVQYRNINDAVYAYSQLNGRYYAGTRLFARFVTLDSWRESICGLYFRGKCPKGGICNFMHVLLNKG----ESLRDLH 951
            C F+ KTG CRF  RCSR H  P  S T++  +MFT+  ME       DPD SLE  E E   ++ +FY D+  EF + G+V+  +   N   HLRGNVYVQY++  +   A S  NGR+YAG +L   F  +  W+ +ICGL+   +CP+G  CNF+HV  N      E+ RD++
Sbjct:  177 CPFYSKTGACRFGDRCSRKHNFPTSSPTLLIKSMFTTFGMEQCRRDDYDPDASLEYSEEETYQQFLDFYEDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSLFNGRWYAGRQLQCEFCPVTRWKMAICGLFEIQQCPRGKHCNFLHVFRNPNNEFWEANRDIY 352
[Close]
BLAST of U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1 vs. TrEMBL
Match: A0A4E0R8F0 (U2 small nuclear ribonucleoprotein auxiliary OS=Fasciola hepatica OX=6192 GN=D915_007009 PE=4 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 5.188e-50
Identity = 112/302 (37.09%), Postives = 154/302 (50.99%), Query Frame = 1 
Query:  184 SPQSIEEINYEEIK--------------WKEREREAQELWKMKQNSIKITGEKQLKEIKVNNKDISNTVVEVPRVKLPFDLPYRNPFEPEFLDQSKKEICHFFRKTGVCRFDLRCSRLHEMPLVSD--------------------TIVFMNMFTSNYMEMLMAG---GDPDFSLECDETELINEYEEFYTDIETEFSS-FGRVLAIRTCRNAMRHLRGNVYVQ-YRNINDAVYAYSQLNGRYYAGTRLFARFVTL-DSWRESICGLYFRGKCPKG-GICNFMHVLLNKGESLRDLHHFLRQ 966
            SP  +E+I  EE K              W ERER AQELW+ K   ++   ++     +  +  +S  +   P V +      +NP       +  KE+C FFRKTG CRF   CSR H+ P  +D                     +  ++MF    + +   G    DPD +LE DE +L+ ++ +FY D+  E  + +GR+ A RTCRN   HLRG+VYV+ YR    A  A     GR+YAG +L    V L   WRE++CGLY RG+CPKG G CNF+HV LN GE++ DLH  LRQ
Sbjct:   52 SPSYLEQIQIEERKLQLEEEQRARDEEAWLERERIAQELWQAKLAKLQCDKKQSPPLPRKESNQLSVELPTTPVVYVATQTRLQNPI------RGSKELCSFFRKTGACRFGESCSRFHDYPSRNDPTPTNDRDELDPQQQYHSRLVLRIVDMFEHCQLRLNSFGRDLDDPDLNLEMDEAQLLADFADFYHDVRGELEARWGRIAAFRTCRNKSAHLRGSVYVEFYRGSGAAWDAAENCQGRWYAGRQLSCMVVRLGGGWREAVCGLYHRGRCPKGDGQCNFLHVFLNPGETVFDLHRALRQ 347
[Close]
BLAST of U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1 vs. TrEMBL
Match: A0A504Z312 (U2 small nuclear ribonucleoprotein auxiliary OS=Fasciola gigantica OX=46835 GN=FGIG_04812 PE=4 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.523e-48
Identity = 111/302 (36.75%), Postives = 152/302 (50.33%), Query Frame = 1 
Query:  184 SPQSIEEINYEEIK--------------WKEREREAQELWKMKQNSIKITGEKQLKEIKVNNKDISNTVVEVPRVKLPFDLPYRNPFEPEFLDQSKKEICHFFRKTGVCRFDLRCSRLHEMPLVSD--------------------TIVFMNMFTSNYMEMLMAG---GDPDFSLECDETELINEYEEFYTDIETEFSS-FGRVLAIRTCRNAMRHLRGNVYVQ-YRNINDAVYAYSQLNGRYYAGTRLFARFVTL-DSWRESICGLYFRGKCPKGG-ICNFMHVLLNKGESLRDLHHFLRQ 966
            SP  +E+I  EE K              W ERER AQELW+ K   ++   ++        +  +S  +   P V +      +NP       +  KE+C FFRKTG CRF   CSR H+ P  +D                     +  ++MF    + +   G    DPD +LE DE +L+ ++ +FY D+  E  + +GR+ A RTCRN   HLRG+VYV+ YR    A  A     GR+YAG +L    V L   WRE++CGLY RG+CPKG   CNF+HV LN GE++ DLH  LRQ
Sbjct:   63 SPSYLEQIQIEERKLQLEEEQRARDEEAWLERERIAQELWQAKLAKLQYDKQQSSPLPHKESNQLSVELPTAPVVYVTTQTRLQNPI------RGSKELCSFFRKTGACRFGESCSRFHDYPSRNDPTPTNDRDELDPQQQYHSRLVLRIVDMFEHCQLRLNAFGRDLDDPDLNLEMDEAQLLADFADFYHDVRGELEARWGRIAAFRTCRNKSAHLRGSVYVEFYRGSGAAWDAAENCQGRWYAGRQLSCMVVRLGGGWREAVCGLYHRGRCPKGDEQCNFLHVFLNPGETVFDLHRALRQ 358
[Close]
BLAST of U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1 vs. TrEMBL
Match: T1INA1 (Uncharacterized protein OS=Strigamia maritima OX=126957 PE=4 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 5.050e-48
Identity = 97/235 (41.28%), Postives = 135/235 (57.45%), Query Frame = 1 
Query:  235 REREAQELWKMKQNSIKITGEKQ-LKEIKVNNKDIS--NTVVEVPRVKLPFDLPYRNP-FEPEFLDQSKKEICHFFRKTGVCRFDLRCSRLHEMPLVSDTIVFMNMFTS-NYMEMLMAGGDPDFSLECDETELINEYEEFYTDIETEFSSFGRVLAIRTCRNAMRHLRGNVYVQYRNINDAVYAYSQLNGRYYAGTRLFARFVTLDSWRESICGLYFRGKCPKGGICNFMHVLLN 924
            RE++ ++ W+ +Q   K   +KQ LKE     ++ +    +   P  KL  D P  NP   P F  +  ++ C FF KTG CRF  RCSR+H  P +S+ I+  NM+T  +  E      D D +LE +E E  N + EFY D+ TEF   GRV+  +TC N   HLRGNVYVQY+   DA+ A+ + NGR+YAG ++   F T+  W+ +ICGLY   +CPKG  CNF+HV  N
Sbjct:   84 REKKIRDEWEKQQAKDKEEKDKQALKEQSKKEREAALLKEISTQP-TKLSSDGPSHNPEPPPNFGTEMDRDNCPFFLKTGACRFGDRCSRVHNRPSLSNIILIPNMYTHFSIEESFRDEYDTDIALEYEEPEKYNHFREFYEDVATEFKKIGRVIQFKTCCNHEPHLRGNVYVQYQFEEDALTAFKRFNGRWYAGKQISCEFATIARWKTAICGLYASKRCPKGRSCNFLHVFQN 317
[Close]
BLAST of U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1 vs. TrEMBL
Match: V3ZZM3 (Uncharacterized protein OS=Lottia gigantea OX=225164 GN=LOTGIDRAFT_235470 PE=4 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 7.621e-45
Identity = 94/251 (37.45%), Postives = 138/251 (54.98%), Query Frame = 1 
Query:  232 EREREAQELWKMK---QNSIKITGEKQLKEIKVNNKDISNTVVEVPRVKLPFDL--------PYRNPFEP-EFLDQSKKEICHFFRKTGVCRFDLRCSRLHEMPLVSDTIVFMNMFTSNYMEM-LMAGGDPDFSLECDETELINEYEEFYTDIETEFSSFGRVLAIRTCRNAMRHLRGNVYVQYRNINDAVYAYSQLNGRYYAGTRLFARFVTLDSWRESICGLYFRGKCPKGGICNFMHVLLNKGESLRD 945
            ERE+ AQ+L++ K   Q   K   E+Q ++IK   +++   + E  + +   D          + NP  P  +  Q  +  C FF KTG C++   CSR HE P  S+T++   MF+   ++  L+   D D SLE ++T+L N + EFY D+  EF S G+V+  + C N   HLRGNVYV +    DA  A  + NGR+YAG +L   + T+D W+ +ICGL F+  CPKG +CNF+HV  N     RD
Sbjct:   84 EREKLAQQLFQAKIERQKKEKDYLEEQQRKIKEEWEELQ-KMEEKEKDRRERDEQREKDRKNAWHNPIAPVNYNSQRPQNNCPFFMKTGACKYGDTCSRTHEYPAESNTVLLPGMFSHFRLDQTLIDEYDTDLSLEYEDTDLYNSFLEFYQDVLPEFQSIGKVIQFKVCSNCAPHLRGNVYVAFEKPEDASKAIIKFNGRWYAGKQLNCEYRTIDKWKSAICGLSFQNSCPKGNVCNFLHVFKNPNNEFRD 333
[Close]
BLAST of U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1 vs. TrEMBL
Match: A0A2P6KKW6 (Zrsr1 OS=Nephila clavipes OX=2585209 GN=NCL1_36599 PE=4 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 3.256e-44
Identity = 95/238 (39.92%), Postives = 129/238 (54.20%), Query Frame = 1 
Query:  379 DLPYRNPFEP-EFLDQSKKEICHFFRKTGVCRFDLRCSRLHEMPLVSDTIVFMNMFTS-NYMEMLMAGGDPDFSLECDETELINEYEEFYTDIETEFSSFGRVLAIRTCRNAMRHLRGNVYVQYRNINDAVYAYSQLNGRYYAGTRLFARFVTLDSWRESICGLYFRGKCPKGGICNFMHVLLNKGESLRDLHHFLRQSRSHTIPRRSSKCCHRSRTCSSVDSASTPELRSSHSVGSQ 1086
            D P+ NP  P  ++   ++E C FF KTG CRF  RCSR H  P VS TI+   M++  +  +      D D SLE ++ E   +++ FY D+  EF  FG+V+  + C N   HLRGNVYVQ+ +  +AV AY   NGRYYAG +L   F  +  WR +ICGL+FR  CPKG  CNF+HV  N        H F    R   +   S+   H SR+  S + +   E +S HS  S+
Sbjct:  155 DGPWHNPMAPGNYIAGVEREQCQFFAKTGCCRFGDRCSRGHSRPSVSTTILIKGMYSHFSIGQTQREDFDTDNSLEYEDKERYEDFKNFYYDVLPEFKKFGKVMQFKVCNNHELHLRGNVYVQFSSEEEAVKAYQAFNGRYYAGRQLTCEFTNVIKWRSAICGLFFRKLCPKGMNCNFLHVFKNP------THEFWEADRD-VLFYESNNGSHSSRSNYSRNRS---ERKSYHSYSSE 382
[Close]
BLAST of U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1 vs. Ensembl Cavefish
Match: zrsr2 (zinc finger CCCH-type, RNA binding motif and serine/arginine rich 2 [Source:NCBI gene;Acc:103023654])

HSP 1 Score: 161.384 bits (407), Expect = 2.040e-43
Identity = 95/273 (34.80%), Postives = 140/273 (51.28%), Query Frame = 1 
Query:  223 KWKEREREAQELWKMKQNSIKITGEKQLKEIK------------------------VNNKDISNTVVEVPRVKLPFDLPYRNPFEP-EFLDQSKKEICHFFRKTGVCRFDLRCSRLHEMPLVSDTIVFMNMFTSNYMEMLMAGG-DPDFSLECDETELINEYEEFYTDIETEFSSFGRVLAIRTCRNAMRHLRGNVYVQYRNINDAVYAYSQLNGRYYAGTRLFARFVTLDSWRESICGLYFRGKCPKGGICNFMHVLLNKG----ESLRDLH 951
            +W ERER AQE +++K+        ++++E K                         + ++    +++    +L     ++NP  P ++  +  +  C FF KTG CRF  RCSR H+ PL S T++  NMF +  ME L     D D SLE  E E+  ++ +FY D+  EF + G+V+  +   N   HLRGNVYVQY   +    A+   NGR+YAG +L   F  +  W+ +ICGL+ R KCPKG  CNF+HV  N      E+ RDLH
Sbjct:  105 EWMERERIAQEEFRLKKEKEDGAQRRKMEEEKRIREEWEEQQKKEREEQEQKQQEKRDREEAVQKMLDQAESQLENGGSWKNPDAPVDYGTEKDRANCPFFLKTGSCRFGDRCSRKHDHPLTSSTLMVRNMFVTFGMEQLKRDDYDTDASLEYSEDEIFQQFLDFYEDVLLEFRNAGKVVQFKVSCNFEPHLRGNVYVQYETEDQCKEAFMMFNGRWYAGRQLQCEFSPVTRWKTAICGLFDRQKCPKGKHCNFLHVFRNPTNEFWEADRDLH 377
[Close]
BLAST of U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1 vs. Ensembl Cavefish
Match: u2af1 (splicing factor U2AF 35 kDa subunit [Source:NCBI gene;Acc:103046898])

HSP 1 Score: 108.227 bits (269), Expect = 7.205e-27
Identity = 64/181 (35.36%), Postives = 91/181 (50.28%), Query Frame = 1 
Query:  412 FLDQSKKEICHFFRKTGVCRFDLRCSRLHEMPLVSDTIVFMNMFTSNYMEMLMAGGDPDFSLECDETELINEYEEFYTDIETEFS-SFGRVLAIRTCRNAMRHLRGNVYVQYRNINDAVYAYSQLNGRYYAGTRLFARFVTLDSWRESICGLYFRGKCPKGGICNFMHVLLNKGESLRDLH 951
            F  +  K  C F+ K G CR   RCSRLH  P  S TI  +N++ +       A G    S    + E+   Y+EF+ ++ TE    +G V  +  C N   HL GNVYV++R   DA  A   LN R++ G  + A    +  +RE+ C  Y  G+C +GG CNFMH+     E  R+L+
Sbjct:    9 FGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNTAQSADGLNAVS----DVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVLNLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRRELY 185
[Close]
BLAST of U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1 vs. Ensembl Sea Lamprey
Match: zrsr2 (zinc finger (CCCH type), RNA-binding motif and serine/arginine rich 2 [Source:ZFIN;Acc:ZDB-GENE-030131-1495])

HSP 1 Score: 147.132 bits (370), Expect = 7.293e-40
Identity = 77/193 (39.90%), Postives = 106/193 (54.92%), Query Frame = 1 
Query:  388 YRNPFEP-EFLDQSKKEICHFFRKTGVCRFDLRCSRLHEMPLVSDTIVFMNMFTSNYMEMLMAGG-DPDFSLECDETELINEYEEFYTDIETEFSSFGRVLAIRTCRNAMRHLRGNVYVQYRNINDAVYAYSQLNGRYYAGTRLFARFVTLDSWRESICGLYFRGKCPKGGICNFMHVLLNKG----ESLRDL 948
            +RNP  P ++  +  +  C FF KTG CRF  RCSRLH  P  S T++  +MF    ++       D D  LE  + +L  ++ +FY D   E    GRV   +   N   HLRGNVYVQY    +A+ A+   NGR+YAG ++   F  +  W+ +ICGLY R +CPKG  CNF+HV  N G    E+ RD+
Sbjct:  144 WRNPDAPRDYGTERDRAHCPFFLKTGACRFGDRCSRLHVRPSRSATLLLRSMFAPFGLDQARCDDYDSDAGLELGDDDLRRQFRDFYRDALPELRRPGRVRQFKVSCNFEPHLRGNVYVQYETEEEAMQAFQMFNGRWYAGRQINCEFCPVSRWKSAICGLYDRRRCPKGKSCNFLHVFQNPGNEFWEADRDI 336
[Close]
BLAST of U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1 vs. Ensembl Nematostella
Match: EDO38373 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SD33])

HSP 1 Score: 110.923 bits (276), Expect = 1.391e-28
Identity = 61/169 (36.09%), Postives = 86/169 (50.89%), Query Frame = 1 
Query:  412 FLDQSKKEICHFFRKTGVCRFDLRCSRLHEMPLVSDTIVFMNMFTSNYMEMLMAGGDPDFSLECDETELINEYEEFYTDIETEFS-SFGRVLAIRTCRNAMRHLRGNVYVQYRNINDAVYAYSQLNGRYYAGTRLFARFVTLDSWRESICGLYFRGKCPKGGICNFMHV 915
            F  +  K  C F+ K G CR   RCSRLH  P  S TI+  NM+ +      +A G    S    + E    Y+ F+ D+  E    +G +  +  C N   HL GNVYV++R   DA  A + LN R+Y G  ++A    +  +RE+ C  Y  G+C +GG CNFMH+
Sbjct:    9 FGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTILLQNMYQNPQSAAQVADGT---SNAISDVEAQEHYDRFFEDVFLELEEKYGEIEEMNVCDNLGDHLVGNVYVKFRYEEDAEKAVNDLNNRWYNGQPIYAELSPVTDFREACCRQYEMGECTRGGFCNFMHL 174
[Close]
BLAST of U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1 vs. Ensembl Nematostella
Match: EDO39379 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SAD7])

HSP 1 Score: 74.3294 bits (181), Expect = 1.054e-14
Identity = 33/88 (37.50%), Postives = 50/88 (56.82%), Query Frame = 1 
Query:  604 DETELINEYEEFYTDIETEFSSFGRVLAIRTCRNAMRHLRGNVYVQYRNINDAVYAYSQLNGRYYAGTRLFARFVTLDSWRESICGLY 867
            D+ E    YEEF+ D+  EF   G+V+  + C N   HLRGNVYVQ+++      A++  NGR+YA  +L   F  +  W+ +IC  +
Sbjct:    7 DDHESFERYEEFFNDVLPEFEKAGKVVQFKACCNYEPHLRGNVYVQFKDEESCARAFAAFNGRWYAQKQLSCEFSPVTRWKSAICDRF 94
[Close]
BLAST of U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1 vs. Ensembl Medaka
Match: zrsr2 (zinc finger CCCH-type, RNA binding motif and serine/arginine rich 2 [Source:NCBI gene;Acc:101174087])

HSP 1 Score: 152.91 bits (385), Expect = 1.341e-40
Identity = 88/242 (36.36%), Postives = 129/242 (53.31%), Query Frame = 1 
Query:  259 WKMKQNSIKITGEKQLKEIKVNNKDISNTVVEVPRVKLPFDLPYRNPFEPEFLD----QSKKEI--CHFFRKTGVCRFDLRCSRLHEMPLVSDTIVFMNMFTSNYMEMLMAGG-DPDFSLECDETELINEYEEFYTDIETEFSSFGRVLAIRTCRNAMRHLRGNVYVQYRNINDAVYAYSQLNGRYYAGTRLFARFVTLDSWRESICGLYFRGKCPKGGICNFMHVLLNKG----ESLRDLH 951
            W+ +Q   +   E++L+E +   + +   + E    +L    P+ NP  P  ++     +++++  C FF KTG CRF  RCSR H  P  S T++   MF +  ME L     D D  LE  E +L   + EFY D+  EF S G+V+  + C N   HL+GNVY+Q+   +    A  + NGR+YAG +L      +  W+ +ICGL+ R KCPKG  CNF+HV  N G    E+ RDLH
Sbjct:  111 WEAQQKREQEEKEQKLQERRDREEAVQKMLDEAEN-QLEHKGPWMNPEAPVNMNFENYGTERDVANCPFFLKTGACRFGERCSRKHVYPTSSPTLMIRGMFMTFGMEQLRRDDYDMDACLEHSEEDLHESFLEFYHDVLPEFKSVGKVVQFKVCCNYEPHLKGNVYIQFETDDQCKEALMKFNGRWYAGRQLQCEISPVTRWKNAICGLFDRRKCPKGKHCNFLHVFRNPGNEFWEADRDLH 351
[Close]
BLAST of U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1 vs. Ensembl Medaka
Match: u2af1 (splicing factor U2AF 35 kDa subunit [Source:NCBI gene;Acc:101171784])

HSP 1 Score: 110.538 bits (275), Expect = 3.625e-27
Identity = 60/174 (34.48%), Postives = 87/174 (50.00%), Query Frame = 1 
Query:  412 FLDQSKKEICHFFRKTGVCRFDLRCSRLHEMPLVSDTIVFMNMF-----TSNYMEMLMAGGDPDFSLECDETELINEYEEFYTDIETEFS-SFGRVLAIRTCRNAMRHLRGNVYVQYRNINDAVYAYSQLNGRYYAGTRLFARFVTLDSWRESICGLYFRGKCPKGGICNFMHV 915
            F  +  K  C F+ K G CR   RCSRLH  P  S T+  +N++     T+  ME + +           + E+   Y+EF+ ++ TE    +G V  +  C N   HL GNVYV++R   DA  A   LN R++ G  + A    +  +RE+ C  Y  G C +GG CNFMH+
Sbjct:    9 FGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTVAMLNIYRNPQNTAQSMEGVTS--------NVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRKEEDAEKAMLDLNNRWFNGQPIHAELSPVTDFREACCHQYETGGCTRGGFCNFMHL 174
[Close]
BLAST of U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1 vs. Ensembl Medaka
Match: ENSORLT00000011113.2 (splicing factor U2AF 35 kDa subunit [Source:NCBI gene;Acc:101158751])

HSP 1 Score: 105.531 bits (262), Expect = 2.991e-26
Identity = 62/181 (34.25%), Postives = 89/181 (49.17%), Query Frame = 1 
Query:  412 FLDQSKKEICHFFRKTGVCRFDLRCSRLHEMPLVSDTIVFMNMFTSNYMEMLMAGGDPDFSLECDETELINEYEEFYTDIETEFS-SFGRVLAIRTCRNAMRHLRGNVYVQYRNINDAVYAYSQLNGRYYAGTRLFARFVTLDSWRESICGLYFRGKCPKGGICNFMHVLLNKGESLRDLH 951
            F  +  K  C F+ K G CR   RCSRLH  P  S TI+  N++ +       A           + E+   Y+EF+ ++ TE    +G V  +  C N   HL GNVYV++R   DA  A   LN R++ G  + A    +  +RE+ C  Y  G+C +GG CNFMH+     E  R+L+
Sbjct:    9 FGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTILIQNIYRNPQNSAQTADAS---RCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVMDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRRELY 186
[Close]
BLAST of U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1 vs. Ensembl Medaka
Match: ENSORLT00000007778.2 (splicing factor U2AF 35 kDa subunit [Source:NCBI gene;Acc:101158751])

HSP 1 Score: 106.301 bits (264), Expect = 3.141e-26
Identity = 62/181 (34.25%), Postives = 89/181 (49.17%), Query Frame = 1 
Query:  412 FLDQSKKEICHFFRKTGVCRFDLRCSRLHEMPLVSDTIVFMNMFTSNYMEMLMAGGDPDFSLECDETELINEYEEFYTDIETEFS-SFGRVLAIRTCRNAMRHLRGNVYVQYRNINDAVYAYSQLNGRYYAGTRLFARFVTLDSWRESICGLYFRGKCPKGGICNFMHVLLNKGESLRDLH 951
            F  +  K  C F+ K G CR   RCSRLH  P  S TI+  N++ +       A           + E+   Y+EF+ ++ TE    +G V  +  C N   HL GNVYV++R   DA  A   LN R++ G  + A    +  +RE+ C  Y  G+C +GG CNFMH+     E  R+L+
Sbjct:    9 FGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTILIQNIYRNPQNSAQTADAS---RCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVMDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRRELY 186
[Close]
BLAST of U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1 vs. Planmine SMEST
Match: SMESG000076094.1 (SMESG000076094.1)

HSP 1 Score: 672.159 bits (1733), Expect = 0.000e+0
Identity = 338/341 (99.12%), Postives = 340/341 (99.71%), Query Frame = 1 
Query:   73 MIVNHFXXXXXXXXXXXXXXXILQALLRNTNHEENEKSPQSIEEINYEEIKWKEREREAQELWKMKQNSIKITGEKQLKEIKVNNKDISNTVVEVPRVKLPFDLPYRNPFEPEFLDQSKKEICHFFRKTGVCRFDLRCSRLHEMPLVSDTIVFMNMFTSNYMEMLMAGGDPDFSLECDETELINEYEEFYTDIETEFSSFGRVLAIRTCRNAMRHLRGNVYVQYRNINDAVYAYSQLNGRYYAGTRLFARFVTLDSWRESICGLYFRGKCPKGGICNFMHVLLNKGESLRDLHHFLRQSRSHTIPRRSSKCCHRSRTCSSVDSASTPELRSSHSVGSQPSI 1095
            MIVNHFKRQKYKKKIRRKKKRILQALLR+TNHEENEKSPQSIEEINYEEIKW+EREREAQELWKMKQNSIKITGEKQLKE KVNNKDISNTVVEVPRVKLPFDLPYRNPFEPEFLDQSKKEICHFFRKTGVCRFDLRCSRLHEMPLVSDTIVFMNMFTSNYMEMLMAGGDPDFSLECDETELINEYEEFYTDIETEFSSFGRVLAIRTCRNAMRHLRGNVYVQYRNINDAVYAYSQLNGRYYAGTRLFARFVTLDSWRESICGLYFRGKCPKGGICNFMHVLLNKGESLRDLHHFLRQSRSHTIPRRSSKCCHRSRTCSSVDSASTPELRSSHSVGSQPSI
Sbjct:    1 MIVNHFKRQKYKKKIRRKKKRILQALLRDTNHEENEKSPQSIEEINYEEIKWQEREREAQELWKMKQNSIKITGEKQLKENKVNNKDISNTVVEVPRVKLPFDLPYRNPFEPEFLDQSKKEICHFFRKTGVCRFDLRCSRLHEMPLVSDTIVFMNMFTSNYMEMLMAGGDPDFSLECDETELINEYEEFYTDIETEFSSFGRVLAIRTCRNAMRHLRGNVYVQYRNINDAVYAYSQLNGRYYAGTRLFARFVTLDSWRESICGLYFRGKCPKGGICNFMHVLLNKGESLRDLHHFLRQSRSHTIPRRSSKCCHRSRTCSSVDSASTPELRSSHSVGSQPSI 341
[Close]
BLAST of U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1 vs. Planmine SMEST
Match: SMESG000036695.1 (SMESG000036695.1)

HSP 1 Score: 670.618 bits (1729), Expect = 0.000e+0
Identity = 337/341 (98.83%), Postives = 339/341 (99.41%), Query Frame = 1 
Query:   73 MIVNHFXXXXXXXXXXXXXXXILQALLRNTNHEENEKSPQSIEEINYEEIKWKEREREAQELWKMKQNSIKITGEKQLKEIKVNNKDISNTVVEVPRVKLPFDLPYRNPFEPEFLDQSKKEICHFFRKTGVCRFDLRCSRLHEMPLVSDTIVFMNMFTSNYMEMLMAGGDPDFSLECDETELINEYEEFYTDIETEFSSFGRVLAIRTCRNAMRHLRGNVYVQYRNINDAVYAYSQLNGRYYAGTRLFARFVTLDSWRESICGLYFRGKCPKGGICNFMHVLLNKGESLRDLHHFLRQSRSHTIPRRSSKCCHRSRTCSSVDSASTPELRSSHSVGSQPSI 1095
            MIVNHFKRQKYKKKIRRKKKRILQALLR+TNHEENEKSP SIE INYEEIKW+EREREAQELWKMKQNSIKITGEKQLKEIKVNNKDISNTVVEVPRVKLPFDLPYRNPFEPEFLDQSKKEICHFFRKTGVCRFDLRCSRLHEMPLVSDTIVFMNMFTSNYMEMLMAGGDPDFSLECDETELINEYEEFYTDIETEFSSFGRVLAIRTCRNAMRHLRGNVYVQYRNINDAVYAYSQLNGRYYAGTRLFARFVTLDSWRESICGLYFRGKCPKGGICNFMHVLLNKGESLRDLHHFLRQSRSHTIPRRSSKCCHRSRTCSSVDSASTPELRSSHSVGSQPSI
Sbjct:    1 MIVNHFKRQKYKKKIRRKKKRILQALLRDTNHEENEKSPHSIEAINYEEIKWQEREREAQELWKMKQNSIKITGEKQLKEIKVNNKDISNTVVEVPRVKLPFDLPYRNPFEPEFLDQSKKEICHFFRKTGVCRFDLRCSRLHEMPLVSDTIVFMNMFTSNYMEMLMAGGDPDFSLECDETELINEYEEFYTDIETEFSSFGRVLAIRTCRNAMRHLRGNVYVQYRNINDAVYAYSQLNGRYYAGTRLFARFVTLDSWRESICGLYFRGKCPKGGICNFMHVLLNKGESLRDLHHFLRQSRSHTIPRRSSKCCHRSRTCSSVDSASTPELRSSHSVGSQPSI 341
[Close]
BLAST of U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1 vs. Planmine SMEST
Match: SMESG000002374.1 (SMESG000002374.1)

HSP 1 Score: 114.005 bits (284), Expect = 4.233e-29
Identity = 64/191 (33.51%), Postives = 97/191 (50.79%), Query Frame = 1 
Query:  412 FLDQSKKEICHFFRKTGVCRFDLRCSRLHEMPLVSDTIVFMNMFTSNYMEMLMAGGDPDFSLECDETELINEYEEFYTDIETEFSS-FGRVLAIRTCRNAMRHLRGNVYVQYRNINDAVYAYSQLNGRYYAGTRLFARFVTLDSWRESICGLYFRGKCPKGGICNFMHVLLNKGESLRDLHHFLRQSRSHT 981
            F  +  K  C F+ K G CR    CSR+H  P  S T++  N++ +   E +   GD      C+E +   +++EFY +I  E +  +G +  +R C N   HL GNVYV +R   DA  A + LN R++    +FA F  +  +R++ C  Y    C + G CNFMHV     E+   L  +LR+ R H+
Sbjct:    9 FGTEKDKVNCSFYYKIGACRHGDNCSRIHNKPTFSQTVLLKNLYIT--PENMALTGDGSHIFLCEE-DAQKKFDEFYQEIFIEINDKYGEIEEMRVCDNLGEHLVGNVYVMFRREEDAEKAINDLNNRWFGKRPIFAEFSPVTDFRDACCAQYELNTCSRAGHCNFMHVKKLSREAENQLRSYLRKQRKHS 196
[Close]
BLAST of U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1 vs. Planmine SMEST
Match: SMESG000034350.1 (SMESG000034350.1)

HSP 1 Score: 108.612 bits (270), Expect = 3.542e-27
Identity = 56/170 (32.94%), Postives = 87/170 (51.18%), Query Frame = 1 
Query:  412 FLDQSKKEICHFFRKTGVCRFDLRCSRLHEMPLVSDTIVFMNMFTSNYMEMLMAGGD-PDFSLECDETELINEYEEFYTDIETEFSS-FGRVLAIRTCRNAMRHLRGNVYVQYRNINDAVYAYSQLNGRYYAGTRLFARFVTLDSWRESICGLYFRGKCPKGGICNFMHV 915
            F  +  K  C F+ K G CR    CSRLH  P  S TI+  N++ +       A G   +F +   E E    +++F+ ++  E    +G +  +  C N   HL GNVY+++R   DA  A ++LN R++ G  + A    +  +RE+ C  Y  G+C +GG CNFMH+
Sbjct:    9 FGTEKDKVNCSFYFKIGACRHGENCSRLHNKPTFSQTILLQNLYIAPQNTAQTADGSHSNFPVSMSEVEAQQVFDDFFEEVFIECEERYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVTELNNRWFGGRPVHAELSPVTDFREACCTQYENGECTRGGFCNFMHL 178
[Close]
BLAST of U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1 vs. Planmine SMEST
Match: SMESG000034350.1 (SMESG000034350.1)

HSP 1 Score: 105.145 bits (261), Expect = 5.033e-26
Identity = 55/169 (32.54%), Postives = 85/169 (50.30%), Query Frame = 1 
Query:  412 FLDQSKKEICHFFRKTGVCRFDLRCSRLHEMPLVSDTIVFMNMFTSNYMEMLMAGGDPDFSLECDETELINEYEEFYTDIETEFSS-FGRVLAIRTCRNAMRHLRGNVYVQYRNINDAVYAYSQLNGRYYAGTRLFARFVTLDSWRESICGLYFRGKCPKGGICNFMHV 915
            F  +  K  C F+ K G CR    CSRLH  P  S TI+  N++ +       A G     +   E E    +++F+ ++  E    +G +  +  C N   HL GNVY+++R   DA  A ++LN R++ G  + A    +  +RE+ C  Y  G+C +GG CNFMH+
Sbjct:    9 FGTEKDKVNCSFYFKIGACRHGENCSRLHNKPTFSQTILLQNLYIAPQNTAQTADGS---HISMSEVEAQQVFDDFFEEVFIECEERYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVTELNNRWFGGRPVHAELSPVTDFREACCTQYENGECTRGGFCNFMHL 174
The following BLAST results are available for this feature:
BLAST of U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5
Match NameE-valueIdentityDescription
ZRSR22.563e-3842.05zinc finger CCCH-type, RNA binding motif and serin... [more]
U2AF1L48.353e-2734.32U2 small nuclear RNA auxiliary factor 1 like 4 [So... [more]
U2AF11.046e-2635.52U2 small nuclear RNA auxiliary factor 1 [Source:HG... [more]
U2AF1L51.046e-2635.52U2 small nuclear RNA auxiliary factor 1 like 5 [So... [more]
U2AF11.417e-2634.81U2 small nuclear RNA auxiliary factor 1 [Source:HG... [more]
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BLAST of U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 2
Match NameE-valueIdentityDescription
uaf-25.032e-2333.75U2AF splicing factor [Source:UniProtKB/TrEMBL;Acc... [more]
uaf-25.032e-2333.75U2AF splicing factor [Source:UniProtKB/TrEMBL;Acc... [more]
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BLAST of U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 4
Match NameE-valueIdentityDescription
CG32941.660e-3234.94gene:FBgn0031628 transcript:FBtr0077381[more]
U2af381.086e-2533.14gene:FBgn0017457 transcript:FBtr0333408[more]
U2af381.086e-2533.14gene:FBgn0017457 transcript:FBtr0078133[more]
CG32942.074e-2534.03gene:FBgn0031628 transcript:FBtr0077382[more]
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BLAST of U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 4
Match NameE-valueIdentityDescription
zrsr29.804e-4243.59zinc finger (CCCH type), RNA-binding motif and ser... [more]
zrsr21.295e-4143.59zinc finger (CCCH type), RNA-binding motif and ser... [more]
CR450764.133.589e-3141.61zinc finger (CCCH type), RNA-binding motif and ser... [more]
u2af11.051e-2635.36U2 small nuclear RNA auxiliary factor 1 [Source:ZF... [more]
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BLAST of U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5
Match NameE-valueIdentityDescription
scgn6.402e-4240.72secretagogin, EF-hand calcium binding protein [Sou... [more]
scgn1.221e-4140.72secretagogin, EF-hand calcium binding protein [Sou... [more]
scgn1.281e-4140.72secretagogin, EF-hand calcium binding protein [Sou... [more]
scgn3.984e-4140.72secretagogin, EF-hand calcium binding protein [Sou... [more]
scgn4.777e-4140.72secretagogin, EF-hand calcium binding protein [Sou... [more]
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BLAST of U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5
Match NameE-valueIdentityDescription
Zrsr25.192e-4142.86zinc finger (CCCH type), RNA binding motif and ser... [more]
Zrsr13.125e-4040.96zinc finger (CCCH type), RNA binding motif and ser... [more]
Gm493962.588e-2835.50predicted gene, 49396 [Source:MGI Symbol;Acc:MGI:6... [more]
Gm493962.588e-2835.50predicted gene, 49396 [Source:MGI Symbol;Acc:MGI:6... [more]
U2af1l42.588e-2835.50U2 small nuclear RNA auxiliary factor 1-like 4 [So... [more]
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BLAST of U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|Q6YVX9|C3H16_ORYSJ1.147e-4042.77Zinc finger CCCH domain-containing protein 16 OS=O... [more]
sp|Q62377|U2AFM_MOUSE1.988e-4042.86U2 small nuclear ribonucleoprotein auxiliary facto... [more]
sp|Q64707|U2AFL_MOUSE2.186e-3940.96U2 small nuclear ribonucleoprotein auxiliary facto... [more]
sp|Q15696|U2AFM_HUMAN1.231e-3742.05U2 small nuclear ribonucleoprotein auxiliary facto... [more]
sp|Q15695|U2AFL_HUMAN1.316e-3742.05Putative U2 small nuclear ribonucleoprotein auxili... [more]
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BLAST of U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A4E0R8F05.188e-5037.09U2 small nuclear ribonucleoprotein auxiliary OS=Fa... [more]
A0A504Z3121.523e-4836.75U2 small nuclear ribonucleoprotein auxiliary OS=Fa... [more]
T1INA15.050e-4841.28Uncharacterized protein OS=Strigamia maritima OX=1... [more]
V3ZZM37.621e-4537.45Uncharacterized protein OS=Lottia gigantea OX=2251... [more]
A0A2P6KKW63.256e-4439.92Zrsr1 OS=Nephila clavipes OX=2585209 GN=NCL1_36599... [more]
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BLAST of U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 2
Match NameE-valueIdentityDescription
zrsr22.040e-4334.80zinc finger CCCH-type, RNA binding motif and serin... [more]
u2af17.205e-2735.36splicing factor U2AF 35 kDa subunit [Source:NCBI g... [more]
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BLAST of U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 1
Match NameE-valueIdentityDescription
zrsr27.293e-4039.90zinc finger (CCCH type), RNA-binding motif and ser... [more]
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BLAST of U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 2
Match NameE-valueIdentityDescription
EDO383731.391e-2836.09Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO393791.054e-1437.50Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 4
Match NameE-valueIdentityDescription
zrsr21.341e-4036.36zinc finger CCCH-type, RNA binding motif and serin... [more]
u2af13.625e-2734.48splicing factor U2AF 35 kDa subunit [Source:NCBI g... [more]
ENSORLT00000011113.22.991e-2634.25splicing factor U2AF 35 kDa subunit [Source:NCBI g... [more]
ENSORLT00000007778.23.141e-2634.25splicing factor U2AF 35 kDa subunit [Source:NCBI g... [more]
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BLAST of U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000076094.10.000e+099.12SMESG000076094.1[more]
SMESG000036695.10.000e+098.83SMESG000036695.1[more]
SMESG000002374.14.233e-2933.51SMESG000002374.1[more]
SMESG000034350.13.542e-2732.94SMESG000034350.1[more]
SMESG000034350.15.033e-2632.54SMESG000034350.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30012802 ID=SMED30012802|Name=U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1|organism=Schmidtea mediterranea sexual|type=transcript|length=1266bp
AAAATATTAAAACATTTAGAGTATTATTATTAAATATCTTATATATTCAA
AAGTTTTTTTACAGTTTTAATTATGATAGTAAATCATTTTAAAAGACAAA
AATACAAAAAAAAAATCCGACGCAAGAAAAAAAGAATTCTTCAAGCTCTA
TTAAGAAATACTAATCATGAAGAAAACGAAAAAAGCCCTCAGTCAATCGA
AGAAATTAATTATGAAGAAATCAAATGGAAAGAAAGGGAACGTGAAGCAC
AAGAACTGTGGAAAATGAAACAAAATTCCATAAAAATTACTGGGGAGAAA
CAGTTAAAAGAAATCAAAGTTAATAATAAAGATATCAGTAACACGGTTGT
AGAAGTTCCTCGTGTCAAATTGCCATTTGATCTACCCTATCGCAATCCGT
TTGAACCGGAATTTTTAGATCAATCTAAAAAGGAGATTTGTCATTTTTTC
CGCAAGACTGGCGTTTGCCGTTTCGATTTGAGATGTTCACGGCTTCATGA
GATGCCTCTAGTATCAGATACGATCGTGTTTATGAACATGTTCACCTCAA
ATTATATGGAAATGTTAATGGCTGGAGGGGATCCAGACTTTAGTTTGGAA
TGCGATGAAACTGAACTCATCAATGAGTATGAGGAATTCTATACAGACAT
AGAGACGGAATTTTCATCGTTCGGTCGCGTATTGGCAATTCGAACCTGTC
GGAATGCTATGCGTCATTTACGCGGCAACGTTTACGTTCAATATCGCAAC
ATTAATGACGCAGTTTATGCATATTCTCAACTGAACGGCCGATATTATGC
CGGCACTCGACTTTTTGCGCGCTTTGTTACGCTCGATAGTTGGCGAGAAT
CAATTTGTGGTCTCTATTTCAGGGGCAAATGCCCGAAGGGCGGCATTTGC
AATTTCATGCACGTCCTACTAAATAAGGGAGAATCGCTGCGTGATCTCCA
TCATTTCCTCCGTCAGTCACGTTCTCATACGATTCCCAGGCGCTCATCGA
AATGTTGTCATCGCAGTCGAACTTGCTCTAGCGTCGATAGTGCCAGTACT
CCAGAACTGCGTTCGTCACACAGTGTAGGCAGCCAGCCAAGCATCAGACG
TCATCGTCGCCATAAATCGAGTAGTAGAAAGAAACAAAAATCCCGTCGGT
CAGATAGACGCAGCCGATCCTCCTCACGTGATCACAGCCGGCATCGACAC
AAACGGAAGCGTCACAAAAATTAGATTTTTGTTTTGATTATTTTTAATAA
ATGCATTTTATTGAAA
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protein sequence of SMED30012802-orf-1

>SMED30012802-orf-1 ID=SMED30012802-orf-1|Name=SMED30012802-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=384bp
MIVNHFKRQKYKKKIRRKKKRILQALLRNTNHEENEKSPQSIEEINYEEI
KWKEREREAQELWKMKQNSIKITGEKQLKEIKVNNKDISNTVVEVPRVKL
PFDLPYRNPFEPEFLDQSKKEICHFFRKTGVCRFDLRCSRLHEMPLVSDT
IVFMNMFTSNYMEMLMAGGDPDFSLECDETELINEYEEFYTDIETEFSSF
GRVLAIRTCRNAMRHLRGNVYVQYRNINDAVYAYSQLNGRYYAGTRLFAR
FVTLDSWRESICGLYFRGKCPKGGICNFMHVLLNKGESLRDLHHFLRQSR
SHTIPRRSSKCCHRSRTCSSVDSASTPELRSSHSVGSQPSIRRHRRHKSS
SRKKQKSRRSDRRSRSSSRDHSRHRHKRKRHKN*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000099neuron
PLANA:0002109X1 cell
PLANA:0002111X2 cell
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR009145U2AF_small
IPR000571Znf_CCCH
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
Vocabulary: biological process
TermDefinition
GO:0000398mRNA splicing, via spliceosome
Vocabulary: molecular function
TermDefinition
GO:0003723RNA binding
GO:0046872metal ion binding
GO:0003676nucleic acid binding
GO:0000166nucleotide binding
Vocabulary: cellular component
TermDefinition
GO:0089701U2AF
GO:0019013viral nucleocapsid
GO:0030529intracellular ribonucleoprotein complex
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009145U2 auxiliary factor small subunitPRINTSPR01848U2AUXFACTORcoord: 273..285
score: 54.2
coord: 123..142
score: 59.77
coord: 211..233
score: 48.02
coord: 142..162
score: 32.68
coord: 183..198
score: 33.24
coord: 238..262
score: 34.91
IPR009145U2 auxiliary factor small subunitPANTHERPTHR12620U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNITcoord: 114..382
IPR000571Zinc finger, CCCH-typeSMARTSM00356c3hfinal6coord: 117..144
e-value: 0.016
score: 24.4
coord: 256..282
e-value: 0.48
score: 18.8
IPR000571Zinc finger, CCCH-typePFAMPF00642zf-CCCHcoord: 119..142
e-value: 2.1E-5
score: 24.3
coord: 257..281
e-value: 3.1E-4
score: 20.6
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 117..145
score: 12.436
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 256..283
score: 10.606
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3DG3DSA:3.30.70.330coord: 144..264
e-value: 5.9E-21
score: 76.4
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 192..246
e-value: 2.2E-6
score: 27.4
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 163..254
score: 9.422
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 339..383
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 323..383
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 323..338
NoneNo IPR availablePANTHERPTHR12620:SF4ZINC FINGER (CCCH TYPE), RNA-BINDING MOTIF AND SERINE/ARGININE RICH 2coord: 114..382
IPR035979RNA-binding domain superfamilySUPERFAMILYSSF54928RNA-binding domain, RBDcoord: 186..255