Expressed conserved protein

Overview
NameExpressed conserved protein
Smed IDSMED30012789
Length (bp)2782
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Expressed conserved protein (SMED30012789) t-SNE clustered cells

Violin plots show distribution of expression levels for Expressed conserved protein (SMED30012789) in cells (dots) of each of the 12 neoblast clusters.

 

back to top


 

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Expressed conserved protein (SMED30012789) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Expressed conserved protein (SMED30012789) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

back to top


 

Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

back to top
Anatomical Expression

PAGE et. al., 2020




SMED30012789

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 4

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
neuronSMED30012789SMESG000033789.1 SMESG000033788.1 dd_Smed_v4_3908_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
whole organism asexual adult single-cell RNA-sequencing evidence
neuronSMED30012789SMESG000033789.1 SMESG000033788.1 dd_Smed_v4_3908_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
whole organism asexual adult colorimetric in situ hybridization evidence
muscle cellSMED30012789SMESG000033789.1 SMESG000033788.1 dd_Smed_v4_3908_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
whole organism asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30012789SMESG000033789.1 SMESG000033788.1 dd_Smed_v4_3908_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
whole organism asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
BLAST of Expressed conserved protein vs. TrEMBL
Match: A0A158RA24 (Uncharacterized protein OS=Taenia asiatica OX=60517 GN=TASK_LOCUS8271 PE=4 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.356e-56
Identity = 107/225 (47.56%), Postives = 161/225 (71.56%), Query Frame = 1
Query:  148 SARFRSPGIVRRNISGDNGFQSAQVAXXXXXXXXXETSNRDVSSNNLSGKRRLSKQDEGTVEQHLEALNNRWRLMAKNQEKMTKEEIMNNYKLLLTDHIKLEKFMSLISRENELTRTRLESDLLDSMMLVEDLKQSLQSRQLNRRSKNDPRESEERRELIKQNKKLLNELHESAKKIEKFELTIFDLQEQVELMDFQMMEVQNQKTIIEEQLEIKGETKAKSSQT 822
             +RFRSP + R+ +    G + A      +  +S  T N    S+      R++ + +   E  +  LN RW ++AKNQE M+K+E++NNY+LL+ DH++LE+F+S+++++NE+ R RLE+DLLD+MM +EDLKQ+L+ R + RR K DPRE+EERR LI+QNKKLLN+L+ESAKKIE  ELT  +++EQ+EL+DFQM+E++NQK I+EE+L  +  T+  S+QT
Sbjct:    2 GSRFRSPVVPRKVV----GTEEAATTFAKKSKRSKSTENSLEKSDPFM---RMAAKGKAEPEDPMSVLNKRWSIIAKNQETMSKQELLNNYRLLMNDHLRLERFLSIVTKDNEMARNRLETDLLDAMMCIEDLKQALEVR-MARRRKIDPREAEERRSLIRQNKKLLNQLYESAKKIEMLELTKLEMKEQLELLDFQMVEIENQKAIVEEELRRQPVTENGSTQT 218          
BLAST of Expressed conserved protein vs. TrEMBL
Match: A0A068Y6A5 (Expressed conserved protein OS=Echinococcus multilocularis OX=6211 GN=EmuJ_000758300 PE=4 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.011e-51
Identity = 123/314 (39.17%), Postives = 194/314 (61.78%), Query Frame = 1
Query:  151 ARFRSPGIVRRNISGDNGFQSAQVAXXXXXXXXXETSNRDVSSNNLSGK----RRLSKQDEGTVEQHLEALNNRWRLMAKNQEKMTKEEIMNNYKLLLTDHIKLEKFMSLISRENELTRTRLESDLLDSMMLVEDLKQSLQSRQLNRRSKNDPRESEERRELIKQNKKLLNELHESAKKIEKFELTIFDLQEQVELMDFQMMEVQNQKTIIEEQLEIKGETKAKSSQTSENCAEQELEKWLEEYKHLKVELESVTMDYNQLILEMKSMQTDNEVLKISEENLQEDLVVKINEIKLLKKDIEVLEDRVKNSLDEA 1080
            +RFRSP + R+ +  +    S            ++ S R  S+ N   K     R++ + +   E  +  LN RW ++AKNQE M+K+E++NNY+LL+ DH++LE+F+S+I+++NE+ R RLE+DLLD+MM +EDLKQ+L+ R + RR K DPRE+EERR LI+QNKKLLN+L+ESAKKIE  ELT  +++EQ+EL+DFQM+E++NQK ++EE+L  +  T+  S+QT ++     L+         +VE  SV       + E+ + Q +   L     +L+       N ++ L++D   L +++    DEA
Sbjct:    3 SRFRSPVVPRKVVGAEEAATS-----------LAKKSKRSKSTENSLEKGDPFMRMAAKSKTDPEDPMSVLNKRWSVVAKNQETMSKQELLNNYRLLMNDHLRLERFLSIITKDNEMARNRLETDLLDAMMCIEDLKQALEVR-MARRRKIDPREAEERRSLIRQNKKLLNQLYESAKKIEMLELTKLEMKEQLELLDFQMVEIENQKAMVEEELRRQPVTENGSTQTDDD-----LDNGPAALAAARVETASV-------LTELANQQAECAALNAKHRHLE-------NLVRELRRDNTDLREQIARVSDEA 285          

HSP 2 Score: 64.6994 bits (156), Expect = 1.052e-6
Identity = 56/195 (28.72%), Postives = 96/195 (49.23%), Query Frame = 1
Query: 1729 SAEYYSRKLEEIQLDHTEDQMNALLSDAERAKEETVRHCARLEEELD---ASNRYVXXXXXXXXXXXXXXXXXRRRIETLEQRLM----NGNLNS-----NASISKSIT---------ELETKIAQLETVNSSLMEVNALEKRRMEEQRIRLKDYEQINKSLNEKLNNIQTKELFSQKKINRLQAVYEDLLREYA 2250
            S EYYS +  ++Q     + M   L+  E+ + +  R  A L   L    A+NR            +      RR    L +RL+     G+ NS      +S+  S T         + +TK+ +LE VNS+L E + L++ R++EQ  R+   E   ++L++++ ++Q  E  +Q+   RLQA+YED+LRE++
Sbjct:  418 SPEYYSAQFSQLQSSSEVEGMRGQLAVCEKRRADLERRVAELSSGLSQAQAANR----------ANEAALTASRRNEAALRRRLLATVDTGSTNSQRSRPTSSLDYSGTPQSGLKDDLDAQTKMIKLEAVNSALSEASQLDRVRLQEQATRIAQLEAEQRTLHDRMASLQASESCAQRASVRLQALYEDMLREFS 602          
BLAST of Expressed conserved protein vs. TrEMBL
Match: A0A068WBZ8 (Expressed conserved protein OS=Echinococcus granulosus OX=6210 GN=EgrG_000758300 PE=4 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.089e-51
Identity = 119/299 (39.80%), Postives = 190/299 (63.55%), Query Frame = 1
Query:  151 ARFRSPGIVRRNISGDNGFQSAQVAXXXXXXXXXETSNRDVSSNNLSGK----RRLSKQDEGTVEQHLEALNNRWRLMAKNQEKMTKEEIMNNYKLLLTDHIKLEKFMSLISRENELTRTRLESDLLDSMMLVEDLKQSLQSRQLNRRSKNDPRESEERRELIKQNKKLLNELHESAKKIEKFELTIFDLQEQVELMDFQMMEVQNQKTIIEEQLEIKGETKAKSSQTSEN---------CAEQELEKWLEEYKHLKVELESVTMDYNQLILEMKSMQTDN-----EVLKISEENLQED 993
            +RFRSP + R+ +  +    S            ++ S R  S+ N   K     R++ + +   E  +  LN RW ++AKNQE M+K+E++NNY+LL+ DH++LE+F+S+I+++NE+ R RLE+DLLD+MM +EDLKQ+L+ R + RR K DPRE+EERR LI+QNKKLLN+L+ESAKKIE  ELT  +++EQ+EL+DFQM+E++NQK ++EE+L  +  T+  S+QT ++          A  E    L E  + + E  +++  +  L   ++ ++ DN     ++ ++S+E   ED
Sbjct:    3 SRFRSPVVPRKVVGAEEAATS-----------LAKKSKRSKSTENSLEKGDPFMRMAAKGKTDPEDPMSVLNKRWSVVAKNQETMSKQELLNNYRLLMNDHLRLERFLSIITKDNEMARNRLETDLLDAMMCIEDLKQALEVR-MARRRKIDPREAEERRSLIRQNKKLLNQLYESAKKIEVLELTKLEMKEQLELLDFQMVEIENQKAMVEEELRRQPVTENGSTQTDDDLDNGPAALAAARVETASVLTELANQQAECAALSAKHRHLENLVRELRRDNTDLREQIGRVSDEAEDED 289          
BLAST of Expressed conserved protein vs. TrEMBL
Match: A0A0X3NUY6 (Uncharacterized protein OS=Schistocephalus solidus OX=70667 GN=TR142680 PE=4 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 1.129e-51
Identity = 114/210 (54.29%), Postives = 164/210 (78.10%), Query Frame = 1
Query:  154 RFRSPGIVRRNISGDNGFQSAQVAXXXXXXXXXETSNRDVSSNNLSGKRRLSKQDEGTVEQHLEALNNRWRLMAKNQEKMTKEEIMNNYKLLLTDHIKLEKFMSLISRENELTRTRLESDLLDSMMLVEDLKQSLQSRQLNRRSKNDPRESEERRELIKQNKKLLNELHESAKKIEKFELTIFDLQEQVELMDFQMMEVQNQKTIIEEQL 783
            RFRSP + R+ +  +    +A +AKKS+RSKSSET+ R +  + L    RL K+D+  +   +  LN RW ++AK QE M+K+EI+NNY+LL+ DH++LE+F+S+++++NE+ R RLESDLLD+MM +EDLKQ+L+ R + RR K DPRE+EERR LI+QNKKLLN+L+ESAKKIE  ELT  +++EQ+EL+DFQ+ME++NQK IIEE++
Sbjct:    4 RFRSPVVPRKTVCVEE--TAATLAKKSKRSKSSETTPR-IQDSVL----RLEKRDKEAMNDPIADLNKRWSIIAKTQESMSKQEILNNYRLLMNDHLRLERFLSIVTKDNEMARNRLESDLLDAMMCIEDLKQALEIR-MARRRKVDPREAEERRALIRQNKKLLNQLYESAKKIEHLELTKLEMKEQLELLDFQLMEIENQKAIIEEEV 205          
BLAST of Expressed conserved protein vs. TrEMBL
Match: A0A094ZGU3 (Uncharacterized protein OS=Schistosoma haematobium OX=6185 GN=MS3_01243 PE=4 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 3.520e-47
Identity = 111/243 (45.68%), Postives = 168/243 (69.14%), Query Frame = 1
Query:  145 NSARFRSPGIVRRNISGDNGFQSAQVAXXXXXXXXXETSNRDVSSNNLSGKRRLSKQDEGTVEQHL--EALNNRWRLMAKNQEKMTKEEIMNNYKLLLTDHIKLEKFMSLISRENELTRTRLESDLLDSMMLVEDLKQSLQSRQLNRRSKNDPRESEERRELIKQNKKLLNELHESAKKIEKFELTIFDLQEQVELMDFQMMEVQNQKTIIEEQLEIKGETKAKSSQTSENCAEQELEKWLEE 867
            N  RFRSP I RR + G+     A  A   ++S+ ++++       N+   +     +E  V++ L  E+++ RW L+AKN E M+K+EIMNNY+LL+++ ++LE+F+S++++ NE+ R RLESDLLD+MM +EDLKQ+L+ R L R    DPRE+EERR LI+QNKKLLN+L ESAKKIE+ E+T  +++EQ+EL+DFQ++EV+NQK +IEE+L     T  + +QT E+    +L   L+E
Sbjct:    5 NQERFRSPDISRRPLGGE-----ALAAYTVKKSRRAKSTEPTALDTNVPLVK--CSNEEEKVKEVLNDESMDKRWSLIAKNYENMSKQEIMNNYRLLMSEKLRLERFLSIMTKNNEMARNRLESDLLDAMMCIEDLKQALEIR-LAR----DPREAEERRYLIRQNKKLLNQLFESAKKIERLEVTKVEMKEQLELLDFQIVEVENQKAMIEEELRKIPPTLHEGTQTEESSDSHQLICQLKE 235          
BLAST of Expressed conserved protein vs. Ensembl Sea Lamprey
Match: jakmip2 (janus kinase and microtubule interacting protein 2 [Source:ZFIN;Acc:ZDB-GENE-091204-293])

HSP 1 Score: 56.225 bits (134), Expect = 2.673e-8
Identity = 40/132 (30.30%), Postives = 74/132 (56.06%), Query Frame = 1
Query:  385 EKMTKEEIMNNYKLLLTDHIKLEKFMSLI---------SRENELTRTRLESDLLDSMMLVEDLKQSLQSRQLNRRSKNDPRESEERRELIKQNKKLLNELHESAKKIEKFELTIFDLQEQVELMDFQMMEVQ 753
            E M +EE    ++ L+ ++  L++  SL+         +  + LTR +L++DLL     VEDL+++L  R        D    EE+++L ++N++LL +LHE        +  + DLQ+Q ELM+F+++E++
Sbjct:  402 EHMAREETELRFRHLMHEYQALQRAYSLLHEQLGGGLDAERDALTREQLQADLLKYQARVEDLERALSQR------GQDATWVEEKQQLCRRNQELLQKLHELENDENSLKQEVQDLQDQNELMEFRILELE 527          
BLAST of Expressed conserved protein vs. Planmine SMEST
Match: SMESG000033788.1 (SMESG000033788.1)

HSP 1 Score: 1157.9 bits (2994), Expect = 0.000e+0
Identity = 583/598 (97.49%), Postives = 583/598 (97.49%), Query Frame = 1
Query:   94 MTSPKPSRYLLTSPPVSNSARFRSPGIVRRNISGDNGFQSAQVAXXXXXXXXXETSNRDVSSNNLSGKRRLSKQDEGTVEQHLEALNNRWRLMAKNQEKMTKEEIMNNYKLLLTDHIKLEKFMSLISRENELTRTRLESDLLDSMMLVEDLKQSLQSRQLNRRSKNDPRESEERRELIKQNKKLLNELHESAKKIEKFELTIFDLQEQVELMDFQMMEVQNQKTIIEEQLEIKGETKAKSSQTSENCAEQELEKWLEEYKHLKVELESVTMDYNQLILEMKSMQTDNEVLKISEENLQEDLVVKINEIKLLKKDIEVLEDRVKNSLDEAPVSVGDHAYVRCPTSRDDDTIISNSEDFDDLSVATDSGFEITDNGTKKSNTFNGHIKLVDKDVGLLGDTVKMLLSMLKEKEDETLKSKTDALDTPTFYKSIYDEEDPNFGSIYSKSFNLGLSKISDFDRSGELSGRHSPIGACCSSSYKLQMLEKENRRWKNFVEHIGKSENELLQVIADLEENMRSNKIEIESLREQVLIKGSPQKSTNLINNERSAEYYSRKLEEIQLDHTEDQMNALLSDAERAKEETVRHCARLEEELDASNRYV 1887
            MTSPKPSRYLLTSPPVSNSARFRSPGIVRRNISGDNGFQSAQVAKKSRRSKSSETSNRDVSSNNLSGKRRLSKQDEGTVEQHLEALNNRWRLMAKNQEKMTKEEIMNNYKLLLTDHIKLEKFMSLISRENELTRTRLESDLLDSMMLVEDLKQSLQSRQLNRRSKNDPRESEERRELIKQNKKLLNELHESAKKIEKFELTIFDLQEQVELMDFQMME QNQKTIIEEQLEIKGETKAKSSQTSENCAEQELEKWLEEYKHLKVELESVTMDYNQLILEMKSMQTDNEVLKISEENLQEDLVVKINEIKLLKKDIEVLEDRVKNSLDEAPVSVGDHAYVRCPTSRDDDTIISNSEDFDDLSVATDSGFEITDN              VDKDVGLLGDTVKMLLSMLKEKEDETLKSKTDALDTPTFYKSIYDEEDPNFGSIYSKSFNLGLSKISDFDRSGELSGRHSPIGACCSSSYKLQMLEKENRRWKNFVEHIGKSENELLQVIADLEENMRSNKIEIESLREQVLIKGSPQKSTNLINNERSAEYYSRKLEEIQLDHTEDQMNALLSDAERAKEETVRHCARLEEELDASNRYV
Sbjct:    1 MTSPKPSRYLLTSPPVSNSARFRSPGIVRRNISGDNGFQSAQVAKKSRRSKSSETSNRDVSSNNLSGKRRLSKQDEGTVEQHLEALNNRWRLMAKNQEKMTKEEIMNNYKLLLTDHIKLEKFMSLISRENELTRTRLESDLLDSMMLVEDLKQSLQSRQLNRRSKNDPRESEERRELIKQNKKLLNELHESAKKIEKFELTIFDLQEQVELMDFQMMEAQNQKTIIEEQLEIKGETKAKSSQTSENCAEQELEKWLEEYKHLKVELESVTMDYNQLILEMKSMQTDNEVLKISEENLQEDLVVKINEIKLLKKDIEVLEDRVKNSLDEAPVSVGDHAYVRCPTSRDDDTIISNSEDFDDLSVATDSGFEITDN--------------VDKDVGLLGDTVKMLLSMLKEKEDETLKSKTDALDTPTFYKSIYDEEDPNFGSIYSKSFNLGLSKISDFDRSGELSGRHSPIGACCSSSYKLQMLEKENRRWKNFVEHIGKSENELLQVIADLEENMRSNKIEIESLREQVLIKGSPQKSTNLINNERSAEYYSRKLEEIQLDHTEDQMNALLSDAERAKEETVRHCARLEEELDASNRYV 584          
BLAST of Expressed conserved protein vs. Planmine SMEST
Match: SMESG000033789.1 (SMESG000033789.1)

HSP 1 Score: 277.715 bits (709), Expect = 4.856e-88
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 1
Query: 2068 MEVNALEKRRMEEQRIRLKDYEQINKSLNEKLNNIQTKELFSQKKINRLQAVYEDLLREYAAAKLPIPDKSKIGNSFSQQRCSISEENLRLRQQLNEMKAKYDELKSLLVRYQMCMFSDSKHXXXXXXXXXXXXXXXXXHLRDFELKMNELTKRTT 2535
            MEVNALEKRRMEEQRIRLKDYEQINKSLNEKLNNIQTKELFSQKKINRLQAVYEDLLREYAAAKLPIPDKSKIGNSFSQQRCSISEENLRLRQQLNEMKAKYDELKSLLVRYQMCMFSDSKHSASNKMSNSLNKKSFNSHLRDFELKMNELTKRTT
Sbjct:    1 MEVNALEKRRMEEQRIRLKDYEQINKSLNEKLNNIQTKELFSQKKINRLQAVYEDLLREYAAAKLPIPDKSKIGNSFSQQRCSISEENLRLRQQLNEMKAKYDELKSLLVRYQMCMFSDSKHSASNKMSNSLNKKSFNSHLRDFELKMNELTKRTT 156          
The following BLAST results are available for this feature:
BLAST of Expressed conserved protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Expressed conserved protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Expressed conserved protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Expressed conserved protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Expressed conserved protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Expressed conserved protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Expressed conserved protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Expressed conserved protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A158RA241.356e-5647.56Uncharacterized protein OS=Taenia asiatica OX=6051... [more]
A0A068Y6A51.011e-5139.17Expressed conserved protein OS=Echinococcus multil... [more]
A0A068WBZ81.089e-5139.80Expressed conserved protein OS=Echinococcus granul... [more]
A0A0X3NUY61.129e-5154.29Uncharacterized protein OS=Schistocephalus solidus... [more]
A0A094ZGU33.520e-4745.68Uncharacterized protein OS=Schistosoma haematobium... [more]
back to top
BLAST of Expressed conserved protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Expressed conserved protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 1
Match NameE-valueIdentityDescription
jakmip22.673e-830.30janus kinase and microtubule interacting protein 2... [more]
back to top
BLAST of Expressed conserved protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Expressed conserved protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Expressed conserved protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Expressed conserved protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 2
Match NameE-valueIdentityDescription
SMESG000033788.10.000e+097.49SMESG000033788.1[more]
SMESG000033789.14.856e-88100.00SMESG000033789.1[more]
back to top
Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30012789 ID=SMED30012789|Name=Expressed conserved protein|organism=Schmidtea mediterranea sexual|type=transcript|length=2782bp
TGAAGTCATTAAAATAAATAGAATTCATTGATTTTTAATTCTTATTGTAA
ACAATCATTTTAATTTTATCAATGGTGTTCTAATTTTATTTTAATGACTT
CACCAAAACCATCAAGATATTTATTAACTTCTCCTCCCGTTAGCAATAGT
GCTCGATTTCGAAGTCCTGGTATTGTTAGAAGGAATATATCTGGCGACAA
TGGCTTTCAGTCTGCTCAAGTGGCAAAGAAATCTCGAAGATCTAAGTCTT
CGGAAACAAGTAATCGTGATGTCAGTTCGAATAATTTGTCAGGTAAACGA
AGATTATCCAAACAAGATGAAGGAACTGTGGAACAGCATTTAGAAGCCTT
AAATAACCGGTGGCGTTTAATGGCAAAAAACCAAGAAAAAATGACGAAAG
AAGAAATAATGAACAATTATAAATTGTTGTTAACCGATCATATAAAATTG
GAGAAATTTATGTCATTAATATCTCGTGAAAACGAATTGACTCGTACCAG
ATTAGAATCAGATTTATTAGATTCAATGATGCTAGTTGAAGATTTAAAAC
AATCCTTGCAATCAAGGCAGCTAAATAGAAGATCAAAAAATGATCCAAGA
GAATCGGAAGAGAGACGAGAACTAATCAAGCAAAATAAAAAACTTTTAAA
TGAGTTACATGAATCAGCAAAGAAGATAGAAAAGTTTGAGCTCACGATTT
TTGATTTACAAGAACAAGTAGAGTTAATGGATTTTCAGATGATGGAAGTT
CAAAATCAGAAAACAATTATCGAAGAACAGTTGGAAATTAAAGGTGAAAC
CAAGGCAAAATCAAGTCAAACTTCAGAAAATTGTGCCGAACAAGAACTTG
AAAAATGGCTTGAAGAATATAAACACCTGAAAGTTGAACTCGAAAGTGTT
ACAATGGATTACAATCAACTCATCTTGGAAATGAAATCAATGCAAACTGA
TAATGAAGTTTTAAAAATATCGGAGGAAAATCTACAGGAAGACCTTGTCG
TGAAAATTAATGAAATAAAATTGTTAAAAAAAGATATTGAGGTGCTTGAA
GACCGAGTGAAGAATTCTTTAGATGAAGCTCCTGTAAGTGTCGGAGATCA
TGCTTATGTTCGTTGCCCTACAAGTCGAGATGATGATACAATAATATCTA
ATTCTGAAGATTTTGATGATTTAAGTGTTGCTACAGATTCTGGTTTTGAA
ATAACAGATAATGGTACAAAAAAGTCCAACACTTTTAACGGTCATATTAA
ATTAGTCGATAAAGATGTTGGCTTATTGGGCGACACTGTTAAAATGCTTT
TATCTATGTTAAAAGAAAAGGAGGATGAAACTCTTAAGAGTAAAACTGAC
GCATTAGACACACCGACGTTCTATAAGTCGATTTATGACGAGGAAGATCC
AAATTTCGGATCAATATATTCGAAATCTTTTAATCTTGGATTATCAAAAA
TCAGTGATTTCGATAGAAGTGGAGAACTTTCTGGTCGACACAGTCCTATT
GGCGCATGTTGTTCAAGCTCTTATAAACTTCAAATGCTCGAAAAAGAAAA
TAGAAGATGGAAAAATTTTGTTGAACACATTGGTAAATCTGAAAATGAAC
TTCTTCAGGTCATTGCTGATTTGGAAGAAAACATGAGAAGTAATAAAATT
GAAATCGAATCACTTCGTGAGCAGGTTTTGATTAAAGGTTCACCTCAAAA
ATCAACTAATCTAATAAATAATGAAAGATCAGCTGAATATTACAGTAGGA
AACTTGAAGAAATTCAATTAGATCACACTGAAGATCAAATGAATGCTTTG
CTTTCTGATGCAGAACGTGCCAAAGAAGAAACCGTACGCCACTGTGCCAG
ACTGGAAGAGGAATTAGATGCTTCAAATAGATATGTTGAAAAACTTGATA
CTGAATTGACGACTGAGAAAAAAATTGAACTAACCTTACGACGCCGGATT
GAAACATTGGAACAGAGGTTGATGAATGGAAACTTGAATTCTAATGCTTC
TATTTCTAAATCAATTACGGAACTAGAAACGAAGATTGCTCAATTGGAAA
CTGTCAATTCTAGTCTAATGGAAGTGAATGCATTGGAGAAACGTAGAATG
GAGGAACAAAGAATTCGACTCAAAGATTATGAACAAATTAATAAATCATT
AAATGAAAAACTTAATAATATTCAAACTAAAGAATTATTTTCTCAGAAAA
AAATTAATCGACTTCAGGCTGTCTATGAAGATTTATTGAGGGAGTATGCA
GCAGCAAAATTGCCAATTCCAGATAAATCAAAAATTGGCAATTCGTTTTC
TCAACAGCGTTGCAGTATATCAGAAGAAAATCTGAGATTGAGGCAACAAC
TCAATGAAATGAAAGCCAAATATGATGAACTCAAATCCTTACTAGTCCGC
TACCAAATGTGTATGTTCTCAGACTCTAAACATTCTGCTTCAAATAAAAT
GTCCAATTCACTTAATAAAAAATCTTTTAACTCTCATCTTCGAGATTTCG
AATTGAAAATGAATGAATTGACAAAGAGAACAACTTAGCAAACGATAATT
GGATTACATGTTTTAGCAGACTCCAACATATTTAGTCATAATTGAGTTCA
TTTTATTTGTTTTATTAATTAATTTTTCTGTAGTATCCTATGCTTTTTCC
CTATCATCGACAACAAATCTTTGTTGACAAGCTTCTTATATTTGACTGAT
AATAATGACTTAGTGTTTTGTTGTGAGGTTTGCTGAAATTTACCTTCATT
ATAAATCATAATTGTGATCACTTTCATGATTT
back to top

protein sequence of SMED30012789-orf-1

>SMED30012789-orf-1 ID=SMED30012789-orf-1|Name=SMED30012789-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=815bp
MTSPKPSRYLLTSPPVSNSARFRSPGIVRRNISGDNGFQSAQVAKKSRRS
KSSETSNRDVSSNNLSGKRRLSKQDEGTVEQHLEALNNRWRLMAKNQEKM
TKEEIMNNYKLLLTDHIKLEKFMSLISRENELTRTRLESDLLDSMMLVED
LKQSLQSRQLNRRSKNDPRESEERRELIKQNKKLLNELHESAKKIEKFEL
TIFDLQEQVELMDFQMMEVQNQKTIIEEQLEIKGETKAKSSQTSENCAEQ
ELEKWLEEYKHLKVELESVTMDYNQLILEMKSMQTDNEVLKISEENLQED
LVVKINEIKLLKKDIEVLEDRVKNSLDEAPVSVGDHAYVRCPTSRDDDTI
ISNSEDFDDLSVATDSGFEITDNGTKKSNTFNGHIKLVDKDVGLLGDTVK
MLLSMLKEKEDETLKSKTDALDTPTFYKSIYDEEDPNFGSIYSKSFNLGL
SKISDFDRSGELSGRHSPIGACCSSSYKLQMLEKENRRWKNFVEHIGKSE
NELLQVIADLEENMRSNKIEIESLREQVLIKGSPQKSTNLINNERSAEYY
SRKLEEIQLDHTEDQMNALLSDAERAKEETVRHCARLEEELDASNRYVEK
LDTELTTEKKIELTLRRRIETLEQRLMNGNLNSNASISKSITELETKIAQ
LETVNSSLMEVNALEKRRMEEQRIRLKDYEQINKSLNEKLNNIQTKELFS
QKKINRLQAVYEDLLREYAAAKLPIPDKSKIGNSFSQQRCSISEENLRLR
QQLNEMKAKYDELKSLLVRYQMCMFSDSKHSASNKMSNSLNKKSFNSHLR
DFELKMNELTKRTT*
back to top
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: cellular component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000099neuron
PLANA:0000101muscle cell
PLANA:0003116parenchymal cell