SMED30012788

Overview
NameSMED30012788
Smed IDSMED30012788
Length (bp)440
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30012788 (SMED30012788) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30012788 (SMED30012788) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30012788 (SMED30012788) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30012788 (SMED30012788) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30012788

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 4

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
nervous systemSMED30012788SMESG000022780.1 dd_Smed_v4_1598_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30012788SMESG000081182.1 SMESG000078992.1 SMESG000077287.1 SMESG000075210.1 SMESG000074028.1 SMESG000072039.1 SMESG000071706.1 SMESG000068337.1 SMESG000065077.1 SMESG000064823.1 SMESG000064822.1 SMESG000061023.1 SMESG000059899.1 SMESG000059678.1 SMESG000056948.1 SMESG000056946.1 SMESG000055464.1 SMESG000052810.1 SMESG000049686.1 SMESG000043961.1 SMESG000043940.1 SMESG000043581.1 SMESG000040860.1 SMESG000039943.1 SMESG000037686.1 SMESG000036786.1 SMESG000035410.1 SMESG000035332.1 SMESG000035314.1 SMESG000031376.1 SMESG000029268.1 SMESG000028769.1 SMESG000022814.1 SMESG000022780.1 SMESG000021640.1 SMESG000009343.1 SMESG000008709.1 SMESG000007620.1 SMESG000005720.1 SMESG000003311.1 SMESG000002803.1 SMESG000001438.1 SMESG000000930.1 SMESG000000374.1 Contig43133newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30012788SMESG000081182.1 SMESG000078992.1 SMESG000077287.1 SMESG000075210.1 SMESG000074028.1 SMESG000072039.1 SMESG000071706.1 SMESG000068337.1 SMESG000065077.1 SMESG000064823.1 SMESG000064822.1 SMESG000061023.1 SMESG000059899.1 SMESG000059678.1 SMESG000056948.1 SMESG000056946.1 SMESG000055464.1 SMESG000052810.1 SMESG000049686.1 SMESG000043961.1 SMESG000043940.1 SMESG000043581.1 SMESG000040860.1 SMESG000039943.1 SMESG000037686.1 SMESG000036786.1 SMESG000035410.1 SMESG000035332.1 SMESG000035314.1 SMESG000031376.1 SMESG000029268.1 SMESG000028769.1 SMESG000022814.1 SMESG000022780.1 SMESG000021640.1 SMESG000009343.1 SMESG000008709.1 SMESG000007620.1 SMESG000005720.1 SMESG000003311.1 SMESG000002803.1 SMESG000001438.1 SMESG000000930.1 SMESG000000374.1 Contig43133uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
epidermisSMED30012788SMESG000022780.1 dd_Smed_v4_1598_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017		whole organism asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30012788 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.001816:23930..24369 -2002
v31.005523:26677..27340 -1525
v31.005523:27450..27897 -1214
v31.005523:27176..27634 -723
v31.001816:24205..24663 -706
Homology
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BLAST of SMED30012788 vs. Planmine SMEST
Match: SMESG000022814.1 (SMESG000022814.1)

HSP 1 Score: 259.225 bits (661), Expect = 2.943e-83
Identity = 130/145 (89.66%), Postives = 133/145 (91.72%), Query Frame = 3 
Query:    3 MWICNGCNHFNWDINAKICKSCYESRYGIECAINKANENWKCQQSICGKANVGSDKYCSRCGVDRAANQNRGEIINAFKDGKEEKIWICTKCGLFNGYLDSDKCEICECSRKEENGNKYEQNRDRLGNPAGGEIDENWYCWRRGC 437
            MWICN CNHFNWDINAKICKSC ESRY IECAINKANENWKCQQSICGKANVGSDKYCSRCGVDRAANQNRGEIIN  KDG++EK+WICTKCGLFNG LDSDKCEICECSRKEE  NKYEQNR RLGNPAGGEIDENW CW R C
Sbjct:  362 MWICNECNHFNWDINAKICKSCNESRYEIECAINKANENWKCQQSICGKANVGSDKYCSRCGVDRAANQNRGEIINVLKDGRKEKMWICTKCGLFNGDLDSDKCEICECSRKEEKENKYEQNRGRLGNPAGGEIDENWDCWSRSC 506

HSP 2 Score: 153.295 bits (386), Expect = 6.623e-44
Identity = 78/108 (72.22%), Postives = 85/108 (78.70%), Query Frame = 3 
Query:  114 ENWKCQQSICGKANVGSDKYCSRCGVDRAANQNRGEIINAFKDGKEEKIWICTKCGLFNGYLDSDKCEICECSRKEENGNKYEQNRDRLGNPAGGEIDENWYCWRRGC 437
            ENW C +  C K N G+ +YCS CGVD+AANQNRGEIIN  KDG++EK+WICTKCG  NG LDSDKC ICECSRKEE  NK EQNR RLGN AGGEIDENW CW R C
Sbjct:  216 ENWDCWRRGCMKKNYGNHQYCSHCGVDKAANQNRGEIINVLKDGRKEKMWICTKCGFHNGDLDSDKCGICECSRKEERENKSEQNRGRLGNSAGGEIDENWDCWSRSC 323

HSP 3 Score: 128.642 bits (322), Expect = 3.536e-35
Identity = 82/159 (51.57%), Postives = 97/159 (61.01%), Query Frame = 3 
Query:    3 MWICNGCNHFNWDINAKICKSC-----------YESRYGI--ECAINKANENWKCQQSICGKANVGSDKYCSRCGVDRAANQNRGEIINAFKDGKEEKIWICTKCGLFNGYLDSDKCEICECSRKEENGNKYEQNRDRLGNPAGGEIDENWYCWRRGCM 440
            MWIC  C  FN D+++  C+ C           YE   G     A  + +ENW C    C K N G+ +YCS CGVDRAANQNRGEIINAFKDGKEEKIWICTKCGLFNG LDSDKCEICE  R E++   YE   D     A G +++ W C +  C+
Sbjct:  447 MWICTKCGLFNGDLDSDKCEICECSRKEEKENKYEQNRGRLGNPAGGEIDENWDCWSRSCRKRNYGNHQYCSHCGVDRAANQNRGEIINAFKDGKEEKIWICTKCGLFNGDLDSDKCEICEEMRYEKDA--YEIITDVEMKRAAGVLND-WKCGKCECV 602

HSP 4 Score: 87.8113 bits (216), Expect = 7.062e-21
Identity = 53/126 (42.06%), Postives = 70/126 (55.56%), Query Frame = 3 
Query:    3 MWICNGCNHFNWDINAKICKSCYESRYGIE-------------CAINKANENWKCQQSICGKANVGSDKYCSRCGVDRAANQNRGEIINAFKDGKEEKIWICTKCGLFNGYLDSDKCEICECSRKE 341
            MWIC  C   N D+++  C  C  SR                  A  + +ENW C    C K N G+ +YCS CGVD+AANQNRGEIIN  KDG++E++WIC +C  FN  +++  C+ C  SR E
Sbjct:  264 MWICTKCGFHNGDLDSDKCGICECSRKEERENKSEQNRGRLGNSAGGEIDENWDCWSRSCRKRNYGNHQYCSHCGVDKAANQNRGEIINVLKDGRKEEMWICNECNHFNWDINAKICKSCNESRYE 389
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BLAST of SMED30012788 vs. Planmine SMEST
Match: SMESG000022780.1 (SMESG000022780.1)

HSP 1 Score: 185.267 bits (469), Expect = 1.949e-55
Identity = 106/146 (72.60%), Postives = 113/146 (77.40%), Query Frame = 3 
Query:    3 MWICNGCNHFNWDINAKICKSCYESRYGIECAINKANENWKCQQSICGKANVGSDKYCSRCGVDRAANQNRGEIINAFKDGKEEKIWICTKCGLFNGYLDSDKCEICECSRKEENGNKYEQNRDRLGNPAGGEIDENWYCWRRGCM 440
            MWICN CNHFN DINAKICKSC ESRY IE AINKANENWKC QSICGKANVGSDKYCS CGVDRAANQNR EIIN  KDGKEEKIWICTKCG FNG L SDKCEICE  R E++   YE   D     A GE+++ W C +  C+
Sbjct:  467 MWICNECNHFNRDINAKICKSCNESRYEIESAINKANENWKCLQSICGKANVGSDKYCSHCGVDRAANQNR-EIINVLKDGKEEKIWICTKCGFFNGDLGSDKCEICEEMRYEKDA--YEIITDVEMKRASGELND-WKCGKCECV 608

HSP 2 Score: 164.466 bits (415), Expect = 6.929e-48
Identity = 84/113 (74.34%), Postives = 94/113 (83.19%), Query Frame = 3 
Query:    3 MWICNGCNHFNWDINAKICKSCYESRYGIECAINKANENWKCQQSICGKANVGSDKYCSRCGVDRAANQNRGEIINAFKDGKEEKIWICTKCGLFNGYLDSDKCEICECSRKE 341
            MWICNGCNHFN DINAKICKSC ESRY IE AINKANENWKCQQSICGKANVGSDKYCSRCGVDRAANQNRGE+I    +G++EK+WIC +C  FN  +++  C+ C  SR E
Sbjct:  382 MWICNGCNHFNRDINAKICKSCNESRYEIESAINKANENWKCQQSICGKANVGSDKYCSRCGVDRAANQNRGEVIGVLLNGRKEKMWICNECNHFNRDINAKICKSCNESRYE 494

HSP 3 Score: 157.532 bits (397), Expect = 1.914e-45
Identity = 80/109 (73.39%), Postives = 87/109 (79.82%), Query Frame = 3 
Query:  111 NENWKCQQSICGKANVGSDKYCSRCGVDRAANQNRGEIINAFKDGKEEKIWICTKCGLFNGYLDSDKCEICECSRKEENGNKYEQNRDRLGNPAGGEIDENWYCWRRGC 437
            +ENW C    C K N G+ +YCS CGVD+AANQNRGEIIN  KDG++EK+WICTKCG  NG LDSDKCEICECSRKEE  NK EQNR RLGNPAGGEIDENW CW R C
Sbjct:  235 DENWDCWWRGCMKRNYGNHQYCSHCGVDKAANQNRGEIINVLKDGRKEKMWICTKCGFHNGDLDSDKCEICECSRKEEKENKSEQNRGRLGNPAGGEIDENWDCWSRNC 343

HSP 4 Score: 89.7373 bits (221), Expect = 1.548e-21
Identity = 54/126 (42.86%), Postives = 72/126 (57.14%), Query Frame = 3 
Query:    3 MWICNGCNHFNWDINAKICKSCYESRYGIE-------------CAINKANENWKCQQSICGKANVGSDKYCSRCGVDRAANQNRGEIINAFKDGKEEKIWICTKCGLFNGYLDSDKCEICECSRKE 341
            MWIC  C   N D+++  C+ C  SR   +              A  + +ENW C    C + N G+ +YCS CGVD+AANQNRGEIIN FKDG++EK+WIC  C  FN  +++  C+ C  SR E
Sbjct:  284 MWICTKCGFHNGDLDSDKCEICECSRKEEKENKSEQNRGRLGNPAGGEIDENWDCWSRNCRERNYGNHQYCSHCGVDKAANQNRGEIINVFKDGRKEKMWICNGCNHFNRDINAKICKSCNESRYE 409

HSP 5 Score: 51.9878 bits (123), Expect = 2.705e-8
Identity = 34/79 (43.04%), Postives = 41/79 (51.90%), Query Frame = 3 
Query:  204 NQNRGEIINAFKDGKEEKIWICTKCGLFNGYLDSDKCEICECSRKEENGNKYEQNRDRLGNPAGGEIDENWYCWRRGCM 440
            N+    I    K+ +    W C  CG  N +L S++C  C   R+E N        DR  NPAGGEIDENW CW RGCM
Sbjct:  177 NEQMNNISMKNKNDENSSQWKCEYCGNANEFL-SNRCAGCPNLRRESN--------DRSDNPAGGEIDENWDCWWRGCM 246
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BLAST of SMED30012788 vs. Planmine SMEST
Match: SMESG000022815.1 (SMESG000022815.1)

HSP 1 Score: 49.2914 bits (116), Expect = 1.910e-7
Identity = 27/81 (33.33%), Postives = 46/81 (56.79%), Query Frame = 3 
Query:  120 WKCQQSICGKANVGSDKYCSRCGVDRAANQNRGEIINAFKDGKEEKIWICTKCGLFNGYLDSDKCEICECSRKEENGNKYE 362
            W+C +  CGK N G D +C +C +DR       +++ ++  G+ ++IWIC+KCG  N   ++DKC+   C + + N    E
Sbjct:  269 WQCWKVNCGKKNKGEDVFCLQCKLDRNPPDPITKLVKSYAGGEMKEIWICSKCGNENRK-ENDKCDRKNCYQSKLNARSKE 348

HSP 2 Score: 46.9802 bits (110), Expect = 1.336e-6
Identity = 31/97 (31.96%), Postives = 49/97 (50.52%), Query Frame = 3 
Query:    3 MWICNGCNHFNWDINAKICKSCYESRYGIECAINKANENWKCQQSICGKANVGSDKYCSRCGVDRAANQNRGEIIN-AFKDGKEEKIWICTKCGLFN 290
            +W+C+ C+  N  IN  IC +C +S   +E  +      WKC +  C + N    K+C +C + R A ++  +II     +G   K WIC KC  +N
Sbjct:   98 LWMCSWCDLIN-HINTSICSACEKSDKNVERFLM-----WKCWKPHCEQLNNPDCKFCKKCFLQRDAPKSLSDIIERQMGNGSILKFWICEKCWKYN 188

HSP 3 Score: 45.0542 bits (105), Expect = 6.288e-6
Identity = 25/85 (29.41%), Postives = 47/85 (55.29%), Query Frame = 3 
Query:  108 ANENWKCQQSICGKANVGSDKYCSRCGVDRAANQNRGEIINAFKDGKEEKIWICTKCGLFNGYLDSDKCEICECSRKEENGNKYE 362
            +  +W+C    C K N G +K+C +C +DR       +++ ++ + + ++IWIC+KCG  N   ++DKC+   C + + N    E
Sbjct:  397 SQSSWQCWNIDCEKMNKGVNKFCQQCRLDRNPPDPITKLVKSYAEKEIKEIWICSKCGNENRK-ENDKCDRKNCYQSKLNARSKE 480
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BLAST of SMED30012788 vs. Planmine SMEST
Match: SMESG000022822.1 (SMESG000022822.1)

HSP 1 Score: 45.4394 bits (106), Expect = 3.849e-6
Identity = 26/81 (32.10%), Postives = 44/81 (54.32%), Query Frame = 3 
Query:  120 WKCQQSICGKANVGSDKYCSRCGVDRAANQNRGEIINAFKDGKEEKIWICTKCGLFNGYLDSDKCEICECSRKEENGNKYE 362
            W+C +  CGK N G D +C +C +DR       +++ ++   + ++IWIC KCG  N   ++DKC+   C + + N    E
Sbjct:  441 WQCWKVNCGKKNKGEDVFCLQCKLDRNPPDPITKLVKSYAGKEIKEIWICEKCGNENRK-ENDKCDKKNCYQSKLNARSKE 520

HSP 2 Score: 45.0542 bits (105), Expect = 6.388e-6
Identity = 30/97 (30.93%), Postives = 48/97 (49.48%), Query Frame = 3 
Query:    3 MWICNGCNHFNWDINAKICKSCYESRYGIECAINKANENWKCQQSICGKANVGSDKYCSRCGVDRAANQNRGEIIN-AFKDGKEEKIWICTKCGLFN 290
            +W+C+ C+  N  IN  IC +C +    +E  +      WKC +  C   N    K+C +C + R A ++  +II     +G+  K WIC KC  +N
Sbjct:  270 IWMCSWCDLIN-HINTSICSACEKRDKSVERFLM-----WKCWKPHCEHLNNPDCKFCKKCFLQRDAPKSLSDIIERQMGNGRILKFWICEKCWKYN 360
The following BLAST results are available for this feature:
BLAST of SMED30012788 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30012788 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30012788 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30012788 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30012788 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30012788 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30012788 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30012788 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30012788 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30012788 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30012788 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30012788 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30012788 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30012788 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 4
Match NameE-valueIdentityDescription
SMESG000022814.12.943e-8389.66SMESG000022814.1[more]
SMESG000022780.11.949e-5572.60SMESG000022780.1[more]
SMESG000022815.11.910e-733.33SMESG000022815.1[more]
SMESG000022822.13.849e-632.10SMESG000022822.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30012788 ID=SMED30012788|Name=SMED30012788|organism=Schmidtea mediterranea sexual|type=transcript|length=440bp
AAATGTGGATTTGTAACGGATGTAATCATTTCAATTGGGATATCAATGCT
AAAATATGCAAAAGTTGTTATGAAAGTAGATATGGAATTGAATGCGCAAT
CAATAAGGCAAATGAGAACTGGAAATGCCAGCAAAGCATTTGTGGAAAGG
CAAATGTTGGCAGTGATAAATATTGCTCGCGTTGCGGTGTTGATAGGGCA
GCCAATCAGAATCGAGGAGAAATTATAAATGCGTTCAAGGATGGAAAGGA
GGAGAAAATATGGATTTGTACTAAATGCGGGCTTTTCAATGGATATTTGG
ACTCAGATAAATGCGAGATTTGTGAATGTTCCAGAAAGGAGGAAAATGGG
AATAAATATGAGCAAAATCGAGATCGATTAGGCAATCCTGCTGGCGGAGA
AATTGATGAGAATTGGTATTGTTGGCGGCGGGGTTGTATG
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protein sequence of SMED30012788-orf-1

>SMED30012788-orf-1 ID=SMED30012788-orf-1|Name=SMED30012788-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=146bp
MWICNGCNHFNWDINAKICKSCYESRYGIECAINKANENWKCQQSICGKA
NVGSDKYCSRCGVDRAANQNRGEIINAFKDGKEEKIWICTKCGLFNGYLD
SDKCEICECSRKEENGNKYEQNRDRLGNPAGGEIDENWYCWRRGCM
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000034epidermis
PLANA:0000099neuron
Vocabulary: INTERPRO
TermDefinition
IPR036443Znf_RanBP2_sf
IPR001876Znf_RanBP2
Vocabulary: molecular function
TermDefinition
GO:0008270zinc ion binding
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001876Zinc finger, RanBP2-typePROSITEPS01358ZF_RANBP2_1coord: 40..61
IPR001876Zinc finger, RanBP2-typePROSITEPS50199ZF_RANBP2_2coord: 35..67
score: 8.411
IPR036443Zinc finger, RanBP2-type superfamilySUPERFAMILYSSF90209Ran binding protein zinc finger-likecoord: 36..67