SMED30012786
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30012786 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 7
Alignments
SMED30012786 aligns in the following genomic locations:
Homology
BLAST of SMED30012786 vs. UniProt/SwissProt
Match: sp|P33300|SUR1_YEAST (Mannosyl phosphorylinositol ceramide synthase SUR1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=SUR1 PE=1 SV=1) HSP 1 Score: 62.003 bits (149), Expect = 3.293e-9 Identity = 49/154 (31.82%), Postives = 71/154 (46.10%), Query Frame = 1 Query: 337 IPKILHYVSNEEDIPKVYTEMYKTCGKLNKDMMLILWTDASFYKVFVTEFDQYIIDKWKRVFSNLDHPL-RKFMIQSMVLYVFGGVSLSLDTVCQKPIH--LAFTDTLSKEKTCFASVSNTMRTNIELDQDKQYGESVLGCSAMHPFYEMLIKN 789 IPKI+H EDIP+ + E + C L+ D ILWTD Y+ F+ E + +D F N +P+ R I+ +L +GGV + LD C++ + LAF L KT VSN V+G HPF+ +K+ Sbjct: 55 IPKIIHQTYKTEDIPEHWKEGRQKCLDLHPDYKYILWTDEMAYE-FIKEEYPWFLD----TFENYKYPIERADAIRYFILSHYGGVYIDLDDGCERKLDPLLAFPAFL--RKTSPLGVSN----------------DVMGSVPRHPFFLKALKS 185
BLAST of SMED30012786 vs. UniProt/SwissProt
Match: sp|Q10323|IMT3_SCHPO (Inositol phosphoceramide mannosyltransferase 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC17G8.11c PE=1 SV=1) HSP 1 Score: 59.6918 bits (143), Expect = 1.712e-8 Identity = 42/177 (23.73%), Postives = 77/177 (43.50%), Query Frame = 1 Query: 280 VMSIETLKNFSSSNRFSNGIPKILHYVSNEEDIPKVYTEMYKTCGKLNKDMMLILWTDASF-------YKVFVTEFDQYIIDKWKRVFSNLDHPLRKFMIQSMVLYVFGGVSLSLDTVCQKPIHLAFTDTLSKEKTCFASVSNTMRTNIELDQDKQYGESVLGCSAMHPFYEMLIKN 789 ++ ++ + N + S IPKI+H +IP+ + K+C L+ D +LWTD S Y F+T++D Y N++ R +++ +LY +GG+ L LD C + + +T + +SN +V+G + HPF +++N Sbjct: 38 LLKVDDVYNHEIYSNQSAAIPKIIHQTWKTNEIPEKWVGAQKSCIDLHPDYEYVLWTDESMREFIATDYPWFLTQYDSYPY--------NIE---RADVVRYFILYKYGGIYLDLDVGCNRTLDPLLHYPAWVRRTSPSGISN----------------NVMGFAKGHPFLLQVVRN 187
BLAST of SMED30012786 vs. UniProt/SwissProt
Match: sp|Q9UT67|IMT2_SCHPO (Inositol phosphoceramide mannosyltransferase 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPCC4F11.04c PE=3 SV=1) HSP 1 Score: 55.8398 bits (133), Expect = 2.715e-7 Identity = 65/253 (25.69%), Postives = 101/253 (39.92%), Query Frame = 1 Query: 121 VIFAAVVFIVM----LIWNKNFKFLGDSVQVDKEILVKIKRTKESIYIPTIYRGD--CRVMSIETLKNFSSSNRFSNG--IPKILHYVSNEEDIPKVYTEMYKTCGKLNKDMMLILWTD-------ASFYKVFVTEFDQYIIDKWKRVFSNLDHPLRKFMIQSMVLYVFGGVSLSLDTVCQKPIHLAFTDTLSKEKTCFASVSNTMRTNIELDQDKQYGESVLGCSAMHPFYEMLIKNTMTTKLSNLYFTEYL 834 +FAAV F +M L +N F D D I ++E Y+ + + + TLK S N S IPKI+H ++P+ + ++C L+ D ILWTD A Y F+ FD Y + R +I+ VLY +GG + LD C++ + + +T VSN V+G HP++E++I+N K + Y+ YL Sbjct: 9 AVFAAVNFFLMSSIVLYFNNEFLMFADRCTKD------IIPSEELRYLRQVLNDSIPSKDEPLPTLK-LDSLNDISGEPVIPKIIHQTWKTTEVPEGWKGAQQSCIDLHPDYEYILWTDEMSRNFIADNYPWFLPYFDAYPFNV-----------QRADVIRYFVLYHYGGNYIDLDDGCRQRLDSLLYYPVWVRRTDPVGVSN----------------DVMGSVPHHPYFELIIQN--LEKNAKSYWLPYL 225
BLAST of SMED30012786 vs. UniProt/SwissProt
Match: sp|O14084|IMT1_SCHPO (Inositol phosphoceramide mannosyltransferase 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=imt1 PE=3 SV=2) HSP 1 Score: 55.4546 bits (132), Expect = 3.562e-7 Identity = 44/188 (23.40%), Postives = 81/188 (43.09%), Query Frame = 1 Query: 280 VMSIETLKNFSSSNRFSNGIPKILHYVSNEEDIPKVYTEMYKTCGKLNKD---MMLILWTDASFYKVFVTEFDQYIIDKWKRVFSNLDHPLRKF-MIQSMVLYVFGGVSLSLDTVCQKPIHLAFTDTLSKEKTCFASVSNTMRTNIELDQDKQYGESVLGCSAMHPFYEMLIKNTMTTKLSNLYFTEY 831 +S+ + + +S+ IP+++H + +E+IP+ ++ +C + + D ILWTD + ++ VF + + ++KF + +LY +GGV + LD C+KP+ LSK S + Y + HPF I N +K ++ YFT+Y Sbjct: 45 TLSLSDVSDDTSAPGEMEKIPRVIHQLWKDENIPERWSNTVNSCRRQHPDENGWQFILWTDEKIMSFMNENYSWFM-----PVFHSYPYNIQKFDAARYFILYHYGGVYMDLDIGCKKPM----DPLLSKATFILPST-----------EPIGYSNDWFAATPKHPFLYQAIHN--LSKFNHRYFTKY 210
BLAST of SMED30012786 vs. UniProt/SwissProt
Match: sp|P38287|CSH1_YEAST (Mannosyl phosphorylinositol ceramide synthase CSH1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=CSH1 PE=1 SV=1) HSP 1 Score: 55.0694 bits (131), Expect = 5.441e-7 Identity = 41/152 (26.97%), Postives = 68/152 (44.74%), Query Frame = 1 Query: 337 IPKILHYVSNEEDIPKVYTEMYKTCGKLNKDMMLILWTDASFYKVFVTEFDQYIIDKWKRVFSNLDHPL-RKFMIQSMVLYVFGGVSLSLDTVCQKPIHLAFTDTLSKEKTCFASVSNTMRTNIELDQDKQYGESVLGCSAMHPFYEMLIKN 789 IPKI+H DIP+ + + + C L+ D ILWTD F+ + + +D F + ++P+ R I+ +L +GG+ + LD C++ + D L K S T +N V+G HPF+ +IK+ Sbjct: 62 IPKIIHQTYKTNDIPEQWVKGRQKCIDLHPDYTYILWTD-EMSDTFIKQEYPWFLD----TFRSYEYPIERADAIRYFILSHYGGIYIDLDDGCERRL-----DPLLKVPAFLRKTSPTGVSN-----------DVMGSVPRHPFFLKVIKS 192
BLAST of SMED30012786 vs. TrEMBL
Match: A0A1I8GZ28 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig033812g2 PE=4 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 5.561e-13 Identity = 63/263 (23.95%), Postives = 110/263 (41.83%), Query Frame = 1 Query: 322 RFSNGIPKILHYVSNEEDIPKVYTEMYKTCGKLNKDMMLILWTDASFYKVFVTEFDQYIIDKWKRVFSNLDHPL-RKFMIQSMVLYVFGGVSLSLDTVCQKPIHLAFTDTLSKEKTCFASVSNTMRTNIELDQDKQYGE--SVLGCSAMHPFYEMLIKNTMTTKLSNLYFTEYLEFYHNFNDKFPVNFLDVAIAEQMFPKVEMEKICKKNSTGTKRN---LACKLMNKTKIPGTSKAMLVHLPSY--GVSNVQIVANDICSAG 1086 R G+PKI+H+V + ++ Y E +TC N D ++LWTD + F ++ +VF + H + R I+ ++LY +GG+ + LD C P+ + +CF + + R + +QY S +GC+ HPF+ +I+ + F FPV+ E + + ++ K N T N + K+ ++ I G K+M L + G+S Q V + G Sbjct: 79 RTPAGVPKIIHFVYRDANVLAPYREALQTCVTKNPDWQVVLWTDQAIKAFMQKHFSSHM-----KVFESFPHKIQRSDAIRYLILYKYGGLYMDLDMTCHAPLLPSLA-----PHSCF--LDSERRHQTQFLHGRQYSAMNSAMGCTPGHPFFRQVIRFVFRPSTAKRNFL------------FPVSIFSTTGPEMLTKQFDLWKRDAANPTVVMLNETYFSPKINPRSGIYGRCKSMAPRLQRHSGGLSPSQRVCLQLQQMG 317
BLAST of SMED30012786 vs. TrEMBL
Match: A0A267GVK0 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig033812g1 PE=4 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 6.158e-13 Identity = 63/263 (23.95%), Postives = 110/263 (41.83%), Query Frame = 1 Query: 322 RFSNGIPKILHYVSNEEDIPKVYTEMYKTCGKLNKDMMLILWTDASFYKVFVTEFDQYIIDKWKRVFSNLDHPL-RKFMIQSMVLYVFGGVSLSLDTVCQKPIHLAFTDTLSKEKTCFASVSNTMRTNIELDQDKQYGE--SVLGCSAMHPFYEMLIKNTMTTKLSNLYFTEYLEFYHNFNDKFPVNFLDVAIAEQMFPKVEMEKICKKNSTGTKRN---LACKLMNKTKIPGTSKAMLVHLPSY--GVSNVQIVANDICSAG 1086 R G+PKI+H+V + ++ Y E +TC N D ++LWTD + F ++ +VF + H + R I+ ++LY +GG+ + LD C P+ + +CF + + R + +QY S +GC+ HPF+ +I+ + F FPV+ E + + ++ K N T N + K+ ++ I G K+M L + G+S Q V + G Sbjct: 79 RTPAGVPKIIHFVYRDANVLAPYREALQTCVTKNPDWQVVLWTDQAIKAFMQKHFSSHM-----KVFESFPHKIQRSDAIRYLILYKYGGLYMDLDMTCHAPLLPSLA-----PHSCF--LDSERRHQTQFLHGRQYSAMNSAMGCTPGHPFFRQVIRFVFRPSTAKRNFL------------FPVSIFSTTGPEMLTKQFDLWKRDAANPTVVMLNETYFSPKINPRSGIYGRCKSMAPRLQRHSGGLSPSQRVCLQLQQMG 317
BLAST of SMED30012786 vs. TrEMBL
Match: A0A267F0E4 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig012259g1 PE=4 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 6.510e-13 Identity = 63/263 (23.95%), Postives = 110/263 (41.83%), Query Frame = 1 Query: 322 RFSNGIPKILHYVSNEEDIPKVYTEMYKTCGKLNKDMMLILWTDASFYKVFVTEFDQYIIDKWKRVFSNLDHPL-RKFMIQSMVLYVFGGVSLSLDTVCQKPIHLAFTDTLSKEKTCFASVSNTMRTNIELDQDKQYGE--SVLGCSAMHPFYEMLIKNTMTTKLSNLYFTEYLEFYHNFNDKFPVNFLDVAIAEQMFPKVEMEKICKKNSTGTKRN---LACKLMNKTKIPGTSKAMLVHLPSY--GVSNVQIVANDICSAG 1086 R G+PKI+H+V + ++ Y E +TC N D ++LWTD + F ++ +VF + H + R I+ ++LY +GG+ + LD C P+ + +CF + + R + +QY S +GC+ HPF+ +I+ + F FPV+ E + + ++ K N T N + K+ ++ I G K+M L + G+S Q V + G Sbjct: 79 RTPAGVPKIIHFVYRDANVLAPYREALQTCVTKNPDWQVVLWTDQAIKAFMQKHFSSHM-----KVFESFPHKIQRSDAIRYLILYKYGGLYMDLDMTCHAPLLPSLAS-----HSCF--LDSERRHQTQFLHGRQYSAMNSAMGCTPEHPFFRQVIQFVFRPSTAKRNFL------------FPVSIFSTTGPEMLTKQFDLWKRDAANPTVVMLNETYFSPKINPRSGIYGRCKSMAPRLQRHSGGLSPSQRVCLQLQQMG 317
BLAST of SMED30012786 vs. TrEMBL
Match: A0A1I8IW34 (Uncharacterized protein OS=Macrostomum lignano OX=282301 PE=4 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 1.471e-12 Identity = 52/192 (27.08%), Postives = 86/192 (44.79%), Query Frame = 1 Query: 298 LKNFSSSNRFSNGIPKILHYVSNEEDIPKVYTEMYKTCGKLNKDMMLILWTDASFYKVFVTEFDQYIIDKWKRVFSNLDHPL-RKFMIQSMVLYVFGGVSLSLDTVCQKPIHLAFTDTLSKEKTCFASVSNTMRTNIELDQDKQYGESVLGCSAMHPFYEMLIKNTMTTK--------LSNLYFTEYLEFYH 846 ++N S S N IP +LH + + + +P Y C +LN +LWTD + T + Q+I +F++ PL R ++ +L+ FGGV L +D C +P+ D+L ++TCF ++ I D S +GC HPF E +++N + LY T L+ + Sbjct: 214 IRNLSRSG-CGNRIPPLLHQIYSSDKLPVDYRASISACLRLNPQFSYMLWTDEDAKQFMRTHYAQFI-----GLFNSYKQPLQRSDALRYFILHQFGGVYLDMDVHCLRPM-----DSLVSKETCFFDQERPEQSRILHGVDFAVMNSAIGCVRRHPFLEQVLRNLQAARHNADIIRTTGPLYLTSQLKLFQ 394
BLAST of SMED30012786 vs. TrEMBL
Match: A0A267G0Y6 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig012114g1 PE=4 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.872e-11 Identity = 48/163 (29.45%), Postives = 81/163 (49.69%), Query Frame = 1 Query: 331 NGIPKILHYVSNEEDIPKVYTEMYKTCGKLNKDMMLILWTDASFYKVFVTEFDQYIIDKWKRVFSNLDHPLRKFMIQSMVLYVFGGVSLSLDTVCQKPIHLAFTDTLSKEKTCFASVSNTMRTNIELDQDKQ------YG------ESVLGCSAMHPFYEMLI 783 +GIPKILHYV E + Y K+C N D ++ W+D+ K+ + ++ I K++ L+ + ++ M+L+ FGGV L +D C+KP FT +E+ FA S T + L ++++ YG S++G HPF+++ I Sbjct: 76 SGIPKILHYVFKSEQVFDSYKPFIKSCLDQNPDWQVLFWSDSHSEKLIADHYARF-IHKYRSYRDRLE---KSDSVRYMILHKFGGVYLDMDVECRKPFSRLFTQPPVQER--FAVASATAAPSAFLGEERREQTRILYGYSYCAMNSMMGSRPGHPFFQLAI 232
BLAST of SMED30012786 vs. Ensembl Yeast
Match: SUR1 (Mannosylinositol phosphorylceramide (MIPC) synthase catalytic subunit; forms a complex with regulatory subunit Csg2p; function in sphingolipid biosynthesis is overlapping with that of Csh1p; SUR1 has a paralog, CSH1, that arose from the whole genome duplication [Source:SGD;Acc:S000005978]) HSP 1 Score: 62.003 bits (149), Expect = 4.743e-11 Identity = 49/154 (31.82%), Postives = 71/154 (46.10%), Query Frame = 1 Query: 337 IPKILHYVSNEEDIPKVYTEMYKTCGKLNKDMMLILWTDASFYKVFVTEFDQYIIDKWKRVFSNLDHPL-RKFMIQSMVLYVFGGVSLSLDTVCQKPIH--LAFTDTLSKEKTCFASVSNTMRTNIELDQDKQYGESVLGCSAMHPFYEMLIKN 789 IPKI+H EDIP+ + E + C L+ D ILWTD Y+ F+ E + +D F N +P+ R I+ +L +GGV + LD C++ + LAF L KT VSN V+G HPF+ +K+ Sbjct: 55 IPKIIHQTYKTEDIPEHWKEGRQKCLDLHPDYKYILWTDEMAYE-FIKEEYPWFLD----TFENYKYPIERADAIRYFILSHYGGVYIDLDDGCERKLDPLLAFPAFL--RKTSPLGVSN----------------DVMGSVPRHPFFLKALKS 185
BLAST of SMED30012786 vs. Ensembl Yeast
Match: CSH1 (Mannosylinositol phosphorylceramide (MIPC) synthase catalytic subunit; forms a complex with regulatory subunit Csg2p; function in sphingolipid biosynthesis is overlapping with that of Sur1p; CSH1 has a paralog, SUR1, that arose from the whole genome duplication [Source:SGD;Acc:S000000365]) HSP 1 Score: 55.0694 bits (131), Expect = 7.836e-9 Identity = 41/152 (26.97%), Postives = 68/152 (44.74%), Query Frame = 1 Query: 337 IPKILHYVSNEEDIPKVYTEMYKTCGKLNKDMMLILWTDASFYKVFVTEFDQYIIDKWKRVFSNLDHPL-RKFMIQSMVLYVFGGVSLSLDTVCQKPIHLAFTDTLSKEKTCFASVSNTMRTNIELDQDKQYGESVLGCSAMHPFYEMLIKN 789 IPKI+H DIP+ + + + C L+ D ILWTD F+ + + +D F + ++P+ R I+ +L +GG+ + LD C++ + D L K S T +N V+G HPF+ +IK+ Sbjct: 62 IPKIIHQTYKTNDIPEQWVKGRQKCIDLHPDYTYILWTD-EMSDTFIKQEYPWFLD----TFRSYEYPIERADAIRYFILSHYGGIYIDLDDGCERRL-----DPLLKVPAFLRKTSPTGVSN-----------DVMGSVPRHPFFLKVIKS 192
BLAST of SMED30012786 vs. Planmine SMEST
Match: SMESG000030941.1 (SMESG000030941.1) HSP 1 Score: 649.432 bits (1674), Expect = 0.000e+0 Identity = 312/320 (97.50%), Postives = 315/320 (98.44%), Query Frame = 1 Query: 151 MLIWNKNFKFLGDSVQVDKEILVKIKRTKESIYIPTIYRGDCRVMSIETLKNFSSSNRFSNGIPKILHYVSNEEDIPKVYTEMYKTCGKLNKDMMLILWTDASFYKVFVTEFDQYIIDKWKRVFSNLDHPLRKFMIQSMVLYVFGGVSLSLDTVCQKPIHLAFTDTLSKEKTCFASVSNTMRTNIELDQDKQYGESVLGCSAMHPFYEMLIKNTMTTKLSNLYFTEYLEFYHNFNDKFPVNFLDVAIAEQMFPKVEMEKICKKNSTGTKRNLACKLMNKTKIPGTSKAMLVHLPSYGVSNVQIVANDICSAGIPVYIVII 1110 M IWNKNFKFL DSVQVDKEILVK++RTKESIYIPTIYRGDCRVMSIETLKNFSSSNRFSNGIPKILHYVSNEEDIPKVYTEMYKTCGKLNKDMMLILWTDASFYKVFVTEFDQYIIDKWK VFSNLDHPLR FMIQSMVLYVFGGVSLSLDTVCQKPIHLAFT+TLSKEKTCFASVSNTMRTNIELDQDKQYGESVLGCSAMHPFYEMLIKN MTTKLSNLYFTEYLEFYHNFNDKFPVNFLDVAIAEQMFPKVEMEKICKKNSTGTKRNLACKLMNKTKIPGTSKAMLVHLPSYGVSNVQIVANDICSAGIPVYIVII Sbjct: 1 MFIWNKNFKFLDDSVQVDKEILVKVQRTKESIYIPTIYRGDCRVMSIETLKNFSSSNRFSNGIPKILHYVSNEEDIPKVYTEMYKTCGKLNKDMMLILWTDASFYKVFVTEFDQYIIDKWKMVFSNLDHPLRTFMIQSMVLYVFGGVSLSLDTVCQKPIHLAFTNTLSKEKTCFASVSNTMRTNIELDQDKQYGESVLGCSAMHPFYEMLIKNKMTTKLSNLYFTEYLEFYHNFNDKFPVNFLDVAIAEQMFPKVEMEKICKKNSTGTKRNLACKLMNKTKIPGTSKAMLVHLPSYGVSNVQIVANDICSAGIPVYIVII 320
BLAST of SMED30012786 vs. Planmine SMEST
Match: SMESG000030921.1 (SMESG000030921.1) HSP 1 Score: 315.079 bits (806), Expect = 9.712e-105 Identity = 150/299 (50.17%), Postives = 197/299 (65.89%), Query Frame = 1 Query: 214 LVKIKRTKESIYIPTIYRGDCRVMSIETLKNFSSSNRFSNGIPKILHYVSNEEDIPKVYTEMYKTCGKLNKDMMLILWTDASFYKVFVTEFDQYIIDKWKRVFSNLDHPLRKFMIQSMVLYVFGGVSLSLDTVCQKPIHLAFTDTLSKEKTCFASVSNTMRTNIELDQDKQYGESVLGCSAMHPFYEMLIKNTMTTKLSNLYFTEYLEFYHNFNDKFPVNFLDVAIAEQMFPKVEMEKICKKNSTGTKRNLACKLMNKTKIPGTSKAMLVHLPSYGVSNVQIVANDICSAGIPVYIVII 1110 L K + SI +P IYRGDC+V++ + LK+F+ N+F NGIPKILH +S EEDI K Y ++YK C K+N DM +LWTDASFY++F+TEF++ + DKWK S LD R +I+SM+LYVFGGV LSLDTVC+ PI + CF ++ N +R NIE D+D +YGE + CS+ H F + LI + Y T Y E Y KF V ++V +AEQ+ PK EMEKICK N TGTKR C+L+ K+ S A+LVHLP YG+S VQIVA+DICS GI ++IVI+ Sbjct: 77 LFKRMKNNHSIDLPAIYRGDCKVIAADYLKDFAIINQFPNGIPKILHLISEEEDISKEYKQLYKECSKINSDMKTVLWTDASFYRIFITEFNEKLTDKWKSFLSKLDDQFRLTIIKSMILYVFGGVVLSLDTVCRSPIK-----QIMNSSDCFVNIGNRLRNNIEFDKDNKYGEFLFACSSKHQFLKSLINDKNNFDKDRFYLTNYFELYKGQASKFKVETVNVKLAEQVLPKTEMEKICKTNVTGTKRKFGCELLKTYKVNVNSSAVLVHLPLYGISKVQIVADDICSLGIAIHIVIV 370
BLAST of SMED30012786 vs. Planmine SMEST
Match: SMESG000030931.1 (SMESG000030931.1) HSP 1 Score: 222.631 bits (566), Expect = 3.096e-72 Identity = 108/119 (90.76%), Postives = 113/119 (94.96%), Query Frame = 1 Query: 202 DKEILVKIKRTKESIYIPTIYRGDCRVMSIETLKNFSSSNRFSNGIPKILHYVSNEEDIPKVYTEMYKTCGKLNKDMMLILWTDASFYKVFVTEFDQYIIDKWKRVFSNLDHPLRKFMI 558 +K ILVKIKRTKE PTIYRGDCRVM+IETLKNFSSSNRFSNGIPKILHYVSNEEDIPKVYT+MYKTCGKLNKDMMLILWTDASFYKVFVTEFDQYIIDKWKRVF NL+HPLRKFM+ Sbjct: 5 NKVILVKIKRTKEK---PTIYRGDCRVMNIETLKNFSSSNRFSNGIPKILHYVSNEEDIPKVYTKMYKTCGKLNKDMMLILWTDASFYKVFVTEFDQYIIDKWKRVFWNLNHPLRKFML 120
BLAST of SMED30012786 vs. Planmine SMEST
Match: SMESG000077190.1 (SMESG000077190.1) HSP 1 Score: 101.679 bits (252), Expect = 6.564e-24 Identity = 75/269 (27.88%), Postives = 129/269 (47.96%), Query Frame = 1 Query: 274 CRVMSIETLKNFSSSNRFSNGIPKILHYVSNEEDIPKVYTEMYKTCGKLNKDMMLILWTDAS----FYKVFVTEFDQYIIDKWKRVFSNLDHPL-RKFMIQSMVLYVFGGVSLSLDTVCQKPIHLAFTDTLSKEKTCFASVSNTMRTNIELDQDKQYGESVLGCSAMHPFYEMLIKN-------TMTTKLSNLYFTEYLEFYH----NFNDKFPVNFLDVAI-AEQMFPKVEMEKICKKNSTGTKRNLACKLMNKTKIPGTSKAMLVHL 1029 C+V S+ETL + +N++ NGIPK++H V IP Y ++ + C K+N D+ + WTD S + F +F Y + ++ PL R + + +L FGG+ + LDT CQKP +L + +TC S N ++ I +QD S++ C++ H F+ ++KN ++ ++ T+ Y + NDK V D + + Q+ P + ++ I + + T +L KT KA++VHL Sbjct: 38 CQVESVETLIEYGQNNQYPNGIPKLIHNVYENHRIPFQYKDLVENCMKINPDVKFVFWTDESAVNLVRQYFPAQFSVY-----QTYLNSKVEPLKRSDLNRYFILMKFGGIYMDLDTRCQKPFNLVMVN-----ETCILSTENQAQSLILWNQDCIAMNSLMACTSQHKFFRFILKNVRKFENISILELTGPIWLTKMFHLYKIMKDSHNDKDAVVLADSYMFSPQVDPYLILKCIRIRKNWKTVGCQKLRLHRKTARKKIRKAIVVHL 296
BLAST of SMED30012786 vs. Planmine SMEST
Match: SMESG000005599.1 (SMESG000005599.1) HSP 1 Score: 99.7525 bits (247), Expect = 3.155e-23 Identity = 80/269 (29.74%), Postives = 123/269 (45.72%), Query Frame = 1 Query: 268 GDCRVMSIETLKNFSSSNRFSNGIPKILHYVSNEEDIPKVYTEMYKTCGKLNKDMMLILWTDASFYKVFVTEFDQYIIDKWKRVFSNLDHPLR-KFMIQSMVLYVFGGVSLSLDTVCQKPIHLAFTDTLSKEKTCFASVSNTMRTNIELDQDKQYGESVLGCSAMHPFYEMLI-KNTMT------TKLSNLYFTEYLEFYHNF--NDKFPVNFLDVAIAEQMFPKVE--MEKICKKNSTGTKRNLACKLMNKTKIPGTSK---AMLVHL 1029 G C V+S++ L F ++++NGIPKI+HYV IP Y+ K C +NKD + WTD + Y+ + F Y + + FS H L+ +I+ +LY FGG+ + LDT CQKP +A + +C S +T I ++ S + H F++ LI K TM ++ T LE Y + P N + +A P E +E++CK T KR C +N + K A+ +HL Sbjct: 33 GHCDVISMKGLLEFGRRHQYANGIPKIIHYVYKTAYIPTQYSSHIKNCKAINKDAKFVFWTDFTAYRFIINNFLDY-VKLYSSYFSKSTHSLKISDVIRYFILYKFGGIYMDLDTRCQKPFDMAMLNG-----SCILSQEVHEQTRILWNRPYLAMNSFMAVIPDHDFFKYLIEKLTMADSSPILSQTGPFMLTNTLESYIKLISHQTKPKNSVSLANPYLYSPLTEHYLERLCKFQYTKWKRK-GCTHLNNHRQQQKVKMKEAVAIHL 294 The following BLAST results are available for this feature:
BLAST of SMED30012786 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of SMED30012786 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of SMED30012786 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of SMED30012786 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of SMED30012786 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of SMED30012786 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of SMED30012786 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of SMED30012786 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of SMED30012786 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 0
BLAST of SMED30012786 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of SMED30012786 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 2
BLAST of SMED30012786 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of SMED30012786 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of SMED30012786 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30012786 ID=SMED30012786|Name=SMED30012786|organism=Schmidtea mediterranea sexual|type=transcript|length=1246bpback to top protein sequence of SMED30012786-orf-1 >SMED30012786-orf-1 ID=SMED30012786-orf-1|Name=SMED30012786-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=340bp MKRKRFFYCVIFAAVVFIVMLIWNKNFKFLGDSVQVDKEILVKIKRTKESback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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