TNF receptor-associated factor
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30012745 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 7
Homology
BLAST of TNF receptor-associated factor vs. Ensembl Human
Match: TRAF3 (TNF receptor associated factor 3 [Source:HGNC Symbol;Acc:HGNC:12033]) HSP 1 Score: 58.151 bits (139), Expect = 5.017e-9 Identity = 52/202 (25.74%), Postives = 93/202 (46.04%), Query Frame = 2 Query: 146 FFCTICQQLLENPSKTDCGCRTCQRCLVKFIAISKERKCRKCRSLMLDNVDIILRDNESNREMSKIKMKCLNE--GCVCVLRMSNLRSHMNEFCSWSNYQC--SDCGXXXXXXXXXXXXSNQCPMKLELCTHCQNYFPLRILRNFHINHLNITDRMCSNWSGECPYQCS--STFHNSLKLHFSECLLVELPCPIYNCGRMFK 733 + C C +L +P +T+CG R C+ C+ ++ S KC C+ ++ D + +DN RE+ +++ C NE GC L + +L H+ C + C DC +++ + +H+ C + C+HC++ P+ L+ D C CP++CS + + L H SEC+ C G +F+ Sbjct: 51 YKCEKCHLVLCSPKQTECGHRFCESCMAALLS-SSSPKCTACQESIVK--DKVFKDNCCKREILALQIYCRNESRGCAEQLMLGHLLVHLKNDCHFEELPCVRPDCKEKVLRKDLRDHVEKACKYREATCSHCKSQVPMIALQKHE-------DTDCPCVVVSCPHKCSVQTLLRSELSAHLSECVNAPSTCSFKRYGCVFQ 242
BLAST of TNF receptor-associated factor vs. Ensembl Human
Match: TRAF3 (TNF receptor associated factor 3 [Source:HGNC Symbol;Acc:HGNC:12033]) HSP 1 Score: 58.151 bits (139), Expect = 5.017e-9 Identity = 52/202 (25.74%), Postives = 93/202 (46.04%), Query Frame = 2 Query: 146 FFCTICQQLLENPSKTDCGCRTCQRCLVKFIAISKERKCRKCRSLMLDNVDIILRDNESNREMSKIKMKCLNE--GCVCVLRMSNLRSHMNEFCSWSNYQC--SDCGXXXXXXXXXXXXSNQCPMKLELCTHCQNYFPLRILRNFHINHLNITDRMCSNWSGECPYQCS--STFHNSLKLHFSECLLVELPCPIYNCGRMFK 733 + C C +L +P +T+CG R C+ C+ ++ S KC C+ ++ D + +DN RE+ +++ C NE GC L + +L H+ C + C DC +++ + +H+ C + C+HC++ P+ L+ D C CP++CS + + L H SEC+ C G +F+ Sbjct: 51 YKCEKCHLVLCSPKQTECGHRFCESCMAALLS-SSSPKCTACQESIVK--DKVFKDNCCKREILALQIYCRNESRGCAEQLMLGHLLVHLKNDCHFEELPCVRPDCKEKVLRKDLRDHVEKACKYREATCSHCKSQVPMIALQKHE-------DTDCPCVVVSCPHKCSVQTLLRSELSAHLSECVNAPSTCSFKRYGCVFQ 242
BLAST of TNF receptor-associated factor vs. Ensembl Human
Match: TRAF3 (TNF receptor associated factor 3 [Source:HGNC Symbol;Acc:HGNC:12033]) HSP 1 Score: 50.8322 bits (120), Expect = 1.183e-6 Identity = 44/169 (26.04%), Postives = 80/169 (47.34%), Query Frame = 2 Query: 146 FFCTICQQLLENPSKTDCGCRTCQRCLVKFIAISKERKCRKCRSLMLDNVDIILRDNESNREMSKIKMKCLNE--GCVCVLRMSNLRSHMNEFCSWSNYQC--SDCGXXXXXXXXXXXXSNQCPMKLELCTHCQNYFPLRILRNFHINHLNITDRMCSNWSGECPYQCS 640 + C C +L +P +T+CG R C+ C+ ++ S KC C+ ++ D + +DN RE+ +++ C NE GC L + +L H+ C + C DC +++ + +H+ C + C+HC++ P+ L+ D C CP++CS Sbjct: 51 YKCEKCHLVLCSPKQTECGHRFCESCMAALLS-SSSPKCTACQESIVK--DKVFKDNCCKREILALQIYCRNESRGCAEQLMLGHLLVHLKNDCHFEELPCVRPDCKEKVLRKDLRDHVEKACKYREATCSHCKSQVPMIALQKHE-------DTDCPCVVVSCPHKCS 209
BLAST of TNF receptor-associated factor vs. Ensembl Human
Match: TRAF3 (TNF receptor associated factor 3 [Source:HGNC Symbol;Acc:HGNC:12033]) HSP 1 Score: 50.8322 bits (120), Expect = 1.183e-6 Identity = 44/169 (26.04%), Postives = 80/169 (47.34%), Query Frame = 2 Query: 146 FFCTICQQLLENPSKTDCGCRTCQRCLVKFIAISKERKCRKCRSLMLDNVDIILRDNESNREMSKIKMKCLNE--GCVCVLRMSNLRSHMNEFCSWSNYQC--SDCGXXXXXXXXXXXXSNQCPMKLELCTHCQNYFPLRILRNFHINHLNITDRMCSNWSGECPYQCS 640 + C C +L +P +T+CG R C+ C+ ++ S KC C+ ++ D + +DN RE+ +++ C NE GC L + +L H+ C + C DC +++ + +H+ C + C+HC++ P+ L+ D C CP++CS Sbjct: 51 YKCEKCHLVLCSPKQTECGHRFCESCMAALLS-SSSPKCTACQESIVK--DKVFKDNCCKREILALQIYCRNESRGCAEQLMLGHLLVHLKNDCHFEELPCVRPDCKEKVLRKDLRDHVEKACKYREATCSHCKSQVPMIALQKHE-------DTDCPCVVVSCPHKCS 209
BLAST of TNF receptor-associated factor vs. Ensembl Human
Match: TRAF3 (TNF receptor associated factor 3 [Source:HGNC Symbol;Acc:HGNC:12033]) HSP 1 Score: 48.9062 bits (115), Expect = 4.305e-6 Identity = 38/143 (26.57%), Postives = 72/143 (50.35%), Query Frame = 2 Query: 146 FFCTICQQLLENPSKTDCGCRTCQRCLVKFIAISKERKCRKCRSLMLDNVDIILRDNESNREMSKIKMKCLNE--GCVCVLRMSNLRSHMNEFCSWSNYQC--SDCGXXXXXXXXXXXXSNQCPMKLELCTHCQNYFPLRILR 562 + C C +L +P +T+CG R C+ C+ ++ S KC C+ ++ D + +DN RE+ +++ C NE GC L + +L H+ C + C DC +++ + +H+ C + C+HC++ P+ L+ Sbjct: 51 YKCEKCHLVLCSPKQTECGHRFCESCMAALLS-SSSPKCTACQESIVK--DKVFKDNCCKREILALQIYCRNESRGCAEQLMLGHLLVHLKNDCHFEELPCVRPDCKEKVLRKDLRDHVEKACKYREATCSHCKSQVPMIALQ 190
BLAST of TNF receptor-associated factor vs. Ensembl Zebrafish
Match: traf5 (Tnf receptor-associated factor 5 [Source:ZFIN;Acc:ZDB-GENE-071120-3]) HSP 1 Score: 51.9878 bits (123), Expect = 1.880e-7 Identity = 57/207 (27.54%), Postives = 85/207 (41.06%), Query Frame = 2 Query: 128 SEYPPSFFCTICQQLLENPSKTDCGCRTCQRCLVKFIAISKERKCRKCRSLMLDNVDI----ILRDNESNREMSKIKMKCLNEGCVCVLRMS--NLRSHMNEFCSWSNYQC--SDCGXXXXXXXXXXXXSNQCPMKLELCTHCQNYFPLRILRNFHINHLNITDRMCSNWSGECPYQCSSTF-HNSLKLHFSECLLVELPCPIYNCG 721 S F C C ++ NP +T CG C +C+ + KC LD++ I I +DN RE+ +++ C N C R S NL+ H+ + C +C SDC + EH N C +LE C +C+ FP+ + + C + C C+ + L+ H ECL VE C N G Sbjct: 33 SRLEQQFICPSCGGIVLNPHQTGCGHIFCAQCVKAYTENGGSSKC------PLDSIPIKPEEIFQDNCCKRELLNLEVFCTN-APECTQRFSLCNLQDHL-KACPHERVRCSHSDCSDIVLRKNLLEHQRNACSYRLETCHYCRQNFPVSQM-------MGHQKSSCPDVEVPCSNNCTQMIKRHQLQAHADECLEVETDCVYKNYG 224
BLAST of TNF receptor-associated factor vs. Ensembl Zebrafish
Match: traf2b (Tnf receptor-associated factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5345]) HSP 1 Score: 52.373 bits (124), Expect = 2.458e-7 Identity = 42/180 (23.33%), Postives = 75/180 (41.67%), Query Frame = 2 Query: 107 LTQQVLGSEYPPSFFCTICQQLLENPSKTDCGCRTCQRCLVKFIAISKERKCRKCRS-------LMLDNVDIILRDNESNREMSKIKMKCLNEGCVCVLRMSNLRSHMNEFCSWSNYQCSDCGXXXXXXXXXXXXSNQCPMKLELCTHCQNYFPLRILRNFHINHLNITDRMCSNWSGEC 625 ++++VL P + C C+ +L P + CG R C C K + S C CR+ + N+ + DN + RE+ + KC NEGC + + + C++ +C C + L EK+ H +C + C +C+ F+ + D +C + +C Sbjct: 43 ISREVLSVSMEPKYQCQQCKDILRKPFQAQCGHRFCVFCF-KQLTSSGPIPCEACRAEGIFEEETSVLNIAVAFPDNAARREIDSLPAKCPNEGCSWSGTLKDFENQHEGRCAFERVKCEACQVLILLSEKDRHNERECEARTLNCKYCKV--------TFNFKEIKAHDEICQKFPMQC 213
BLAST of TNF receptor-associated factor vs. Ensembl Zebrafish
Match: traf2b (Tnf receptor-associated factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5345]) HSP 1 Score: 51.9878 bits (123), Expect = 3.031e-7 Identity = 42/180 (23.33%), Postives = 75/180 (41.67%), Query Frame = 2 Query: 107 LTQQVLGSEYPPSFFCTICQQLLENPSKTDCGCRTCQRCLVKFIAISKERKCRKCRS-------LMLDNVDIILRDNESNREMSKIKMKCLNEGCVCVLRMSNLRSHMNEFCSWSNYQCSDCGXXXXXXXXXXXXSNQCPMKLELCTHCQNYFPLRILRNFHINHLNITDRMCSNWSGEC 625 ++++VL P + C C+ +L P + CG R C C K + S C CR+ + N+ + DN + RE+ + KC NEGC + + + C++ +C C + L EK+ H +C + C +C+ F+ + D +C + +C Sbjct: 30 ISREVLSVSMEPKYQCQQCKDILRKPFQAQCGHRFCVFCF-KQLTSSGPIPCEACRAEGIFEEETSVLNIAVAFPDNAARREIDSLPAKCPNEGCSWSGTLKDFENQHEGRCAFERVKCEACQVLILLSEKDRHNERECEARTLNCKYCKV--------TFNFKEIKAHDEICQKFPMQC 200
BLAST of TNF receptor-associated factor vs. Ensembl Zebrafish
Match: traf2b (Tnf receptor-associated factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5345]) HSP 1 Score: 51.9878 bits (123), Expect = 3.031e-7 Identity = 42/180 (23.33%), Postives = 75/180 (41.67%), Query Frame = 2 Query: 107 LTQQVLGSEYPPSFFCTICQQLLENPSKTDCGCRTCQRCLVKFIAISKERKCRKCRS-------LMLDNVDIILRDNESNREMSKIKMKCLNEGCVCVLRMSNLRSHMNEFCSWSNYQCSDCGXXXXXXXXXXXXSNQCPMKLELCTHCQNYFPLRILRNFHINHLNITDRMCSNWSGEC 625 ++++VL P + C C+ +L P + CG R C C K + S C CR+ + N+ + DN + RE+ + KC NEGC + + + C++ +C C + L EK+ H +C + C +C+ F+ + D +C + +C Sbjct: 30 ISREVLSVSMEPKYQCQQCKDILRKPFQAQCGHRFCVFCF-KQLTSSGPIPCEACRAEGIFEEETSVLNIAVAFPDNAARREIDSLPAKCPNEGCSWSGTLKDFENQHEGRCAFERVKCEACQVLILLSEKDRHNERECEARTLNCKYCKV--------TFNFKEIKAHDEICQKFPMQC 200
BLAST of TNF receptor-associated factor vs. Ensembl Zebrafish
Match: traf2a (Tnf receptor-associated factor 2a [Source:ZFIN;Acc:ZDB-GENE-071120-2]) HSP 1 Score: 51.6026 bits (122), Expect = 3.743e-7 Identity = 42/180 (23.33%), Postives = 77/180 (42.78%), Query Frame = 2 Query: 95 NKLELTQQVLGSEYPPSFFCTICQQLLENPSKTDCGCRTCQRCLVKFIAISKERKCRKC-RSLMLDNVDIILR------DNESNREMSKIKMKCLNEGCVCVLRMSNLRSHMNEFCSWSNYQCSDCGXXXXXXXXXXXXSNQCPMKLELCTHCQNYFPLRILRNFHINHLNITDRMCSNW 613 NK +++L ++ C IC ++L P + CG R C C K ++ S +KC C + + + IL+ DN + RE+ ++ C+NE C + ++ C + C C + ++ E E H +CP + C +C+ FH ++ D +C + Sbjct: 15 NKPGFPKKILANKLEDKHLCNICLKILRRPFQAQCGHRFCSYCFNKAVS-SGPQKCSACIKEDIFEEPTSILKQGCAFPDNAAKREVEALEAVCINEECSWTGTIKEYEANHEGKCDFRILPCPSCKELLRANELERHNERECPERTLNCKYCKE--------PFHFKNIKAHDEICPKY 185
BLAST of TNF receptor-associated factor vs. Ensembl Xenopus
Match: egf (epidermal growth factor [Source:Xenbase;Acc:XB-GENE-951823]) HSP 1 Score: 62.3882 bits (150), Expect = 1.381e-10 Identity = 54/216 (25.00%), Postives = 94/216 (43.52%), Query Frame = 2 Query: 137 PP---SFFCTICQQLLENPSKTDCGCRTCQRCLVKFIAISKERKCRKCRSLMLDNVDIILRDNESNREMSKIKMKCLNEGCVCVLRMSNLRSHMNEFCSWSNYQCSDCGXXXXXXXXXXXXSNQCPMKLELCTHCQNYFPLRILRNFHINHLNITDRMCSNWSGECPYQCSSTFHNSLKLHFS-ECLLVELPCPIY--NCGRMFKRVDYYDHVTNF 766 PP + C IC L +T CG R C+ C++K I + + SLM + + DN + RE+ +++KC ++GC + + +L H+ C ++ +CS C ++H +CP + C +C L + +NH D+ C C Y ++ + H+S +C + +PC Y C +R D H+ F Sbjct: 64 PPLESKYECPICLMALREAVQTPCGHRFCKACILKSIRDAGHKCPVDNESLMENQ---LFPDNFAKREILSLRVKCPSQGCTETMELRHLERHLVR-CDFAGVECSQCQSSFPKYSLQKHKFEECPRRQIFCENCA----LAMALEDKLNH----DQTCPLAYVTCEYCQTNLIREQMPAHYSMDCTMAPIPCMYYEFGCTEKMQRNDLARHLQEF 267
BLAST of TNF receptor-associated factor vs. Ensembl Xenopus
Match: ssh2 (slingshot protein phosphatase 2 [Source:Xenbase;Acc:XB-GENE-993093]) HSP 1 Score: 55.4546 bits (132), Expect = 3.140e-8 Identity = 56/204 (27.45%), Postives = 92/204 (45.10%), Query Frame = 2 Query: 146 FFCTICQQLLENPSKTDCGCRTCQRCLVKFIAISKERKCRKCRSLMLDNV--DIILRDNESNREMSKIKMKCLNE--GCVCVLRMSNLRSHMNEFCSWSNYQC--SDCGXXXXXXXXXXXXSNQCPMKLELCTHCQNYFPLRILRNFHINHLNITDRMCSNWSGECPYQCS--STFHNSLKLHFSECLLVELPCPIYNCGRMFK 733 + C C+ +L NP +T+CG R C+ C+ ++ S +C C DN+ D + +DN RE+ ++M C NE GC ++ + NL H+ C + C +DC +++ + +H+ C + C C+N PL ++ D C + CP+ CS S + L H EC+ C G FK Sbjct: 46 YKCEKCRLVLCNPRQTECGHRFCETCMNAILS-STSPQCMACE----DNITKDKVFKDNCCRREVLALQMFCRNETRGCKELITLGNLLIHLKSDCQFEELSCPRADCKEKVIRKDLSDHIEKTCKYRETPCKFCRNQVPLVEMQKHE-------DVDCPSVVISCPHMCSVKSLLRSELNAHLLECVNAPSTCSFKRYGCTFK 237
BLAST of TNF receptor-associated factor vs. Ensembl Xenopus
Match: ssh2 (slingshot protein phosphatase 2 [Source:Xenbase;Acc:XB-GENE-993093]) HSP 1 Score: 49.2914 bits (116), Expect = 3.707e-6 Identity = 47/171 (27.49%), Postives = 81/171 (47.37%), Query Frame = 2 Query: 146 FFCTICQQLLENPSKTDCGCRTCQRCLVKFIAISKERKCRKCRSLMLDNV--DIILRDNESNREMSKIKMKCLNE--GCVCVLRMSNLRSHMNEFCSWSNYQC--SDCGXXXXXXXXXXXXSNQCPMKLELCTHCQNYFPLRILRNFHINHLNITDRMCSNWSGECPYQCS 640 + C C+ +L NP +T+CG R C+ C+ ++ S +C C DN+ D + +DN RE+ ++M C NE GC ++ + NL H+ C + C +DC +++ + +H+ C + C C+N PL ++ D C + CP+ CS Sbjct: 46 YKCEKCRLVLCNPRQTECGHRFCETCMNAILS-STSPQCMACE----DNITKDKVFKDNCCRREVLALQMFCRNETRGCKELITLGNLLIHLKSDCQFEELSCPRADCKEKVIRKDLSDHIEKTCKYRETPCKFCRNQVPLVEMQKHE-------DVDCPSVVISCPHMCS 204
BLAST of TNF receptor-associated factor vs. Ensembl Mouse
Match: Traf3 (TNF receptor-associated factor 3 [Source:MGI Symbol;Acc:MGI:108041]) HSP 1 Score: 60.8474 bits (146), Expect = 3.600e-10 Identity = 53/202 (26.24%), Postives = 95/202 (47.03%), Query Frame = 2 Query: 146 FFCTICQQLLENPSKTDCGCRTCQRCLVKFIAISKERKCRKCRSLMLDNVDIILRDNESNREMSKIKMKCLNE--GCVCVLRMSNLRSHMNEFCSWSNYQC--SDCGXXXXXXXXXXXXSNQCPMKLELCTHCQNYFPLRILRNFHINHLNITDRMCSNWSGECPYQCS--STFHNSLKLHFSECLLVELPCPIYNCGRMFK 733 + C C+ +L NP +T+CG R C+ C+ ++ S KC C+ ++ D + +DN RE+ +++ C NE GC L + +L H+ C + C +DC +++ + +H+ C + C+HC++ P+ L+ D C CP++CS + + L H SEC+ C G +F+ Sbjct: 50 YKCEKCRLVLCNPKQTECGHRFCESCMAALLS-SSSPKCTACQESIIK--DKVFKDNCCKREILALQVYCRNEGRGCAEQLTLGHLLVHLKNECQFEELPCLRADCKEKVLRKDLRDHVEKACKYREATCSHCKSQVPMIKLQKHE-------DTDCPCVVVSCPHKCSVQTLLRSELSAHLSECVNAPSTCSFKRYGCVFQ 241
BLAST of TNF receptor-associated factor vs. Ensembl Mouse
Match: Traf3 (TNF receptor-associated factor 3 [Source:MGI Symbol;Acc:MGI:108041]) HSP 1 Score: 53.5286 bits (127), Expect = 1.043e-7 Identity = 45/169 (26.63%), Postives = 82/169 (48.52%), Query Frame = 2 Query: 146 FFCTICQQLLENPSKTDCGCRTCQRCLVKFIAISKERKCRKCRSLMLDNVDIILRDNESNREMSKIKMKCLNEGCVCV--LRMSNLRSHMNEFCSWSNYQC--SDCGXXXXXXXXXXXXSNQCPMKLELCTHCQNYFPLRILRNFHINHLNITDRMCSNWSGECPYQCS 640 + C C+ +L NP +T+CG R C+ C+ ++ S KC C+ ++ D + +DN RE+ +++ C NEG C L + +L H+ C + C +DC +++ + +H+ C + C+HC++ P+ L+ D C CP++CS Sbjct: 50 YKCEKCRLVLCNPKQTECGHRFCESCMAALLS-SSSPKCTACQESIIK--DKVFKDNCCKREILALQVYCRNEGRGCAEQLTLGHLLVHLKNECQFEELPCLRADCKEKVLRKDLRDHVEKACKYREATCSHCKSQVPMIKLQKHE-------DTDCPCVVVSCPHKCS 208
BLAST of TNF receptor-associated factor vs. Ensembl Mouse
Match: Traf3 (TNF receptor-associated factor 3 [Source:MGI Symbol;Acc:MGI:108041]) HSP 1 Score: 53.5286 bits (127), Expect = 1.043e-7 Identity = 45/169 (26.63%), Postives = 82/169 (48.52%), Query Frame = 2 Query: 146 FFCTICQQLLENPSKTDCGCRTCQRCLVKFIAISKERKCRKCRSLMLDNVDIILRDNESNREMSKIKMKCLNEGCVCV--LRMSNLRSHMNEFCSWSNYQC--SDCGXXXXXXXXXXXXSNQCPMKLELCTHCQNYFPLRILRNFHINHLNITDRMCSNWSGECPYQCS 640 + C C+ +L NP +T+CG R C+ C+ ++ S KC C+ ++ D + +DN RE+ +++ C NEG C L + +L H+ C + C +DC +++ + +H+ C + C+HC++ P+ L+ D C CP++CS Sbjct: 50 YKCEKCRLVLCNPKQTECGHRFCESCMAALLS-SSSPKCTACQESIIK--DKVFKDNCCKREILALQVYCRNEGRGCAEQLTLGHLLVHLKNECQFEELPCLRADCKEKVLRKDLRDHVEKACKYREATCSHCKSQVPMIKLQKHE-------DTDCPCVVVSCPHKCS 208
BLAST of TNF receptor-associated factor vs. Ensembl Mouse
Match: Traf2 (TNF receptor-associated factor 2 [Source:MGI Symbol;Acc:MGI:101835]) HSP 1 Score: 50.447 bits (119), Expect = 8.858e-7 Identity = 44/162 (27.16%), Postives = 69/162 (42.59%), Query Frame = 2 Query: 86 TKMNKLELTQ-----QVLGSEYPPSFFCTICQQLLENPSKTDCGCRTCQRCLVKFIAISKERKCRKC--RSLMLDNVDII-----LRDNESNREMSKIKMKCLNEGCVCVLRMSNLRSHMNEFCSWSNYQCSDCGXXXXXXXXXXXXSNQCPMKLELCTHCQ 535 T LEL Q +LG+ + C+ C+ +L P + CG R C CL ++ S + C C L + + I+ DN + RE+ + C N+GC + S C + +C C ++L EKE H +CP + C HC+ Sbjct: 7 TSPGSLELLQPGFSKTLLGTRLEAKYLCSACKNILRRPFQAQCGHRYCSFCLTSILS-SGPQNCAACVYEGLYEEGISILESSSAFPDNAARREVESLPAVCPNDGCTWKGTLKEYESCHEGLCPFLLTECPACKGLVRLSEKEHHTEQECPKRSLSCQHCR 167
BLAST of TNF receptor-associated factor vs. Ensembl Mouse
Match: Traf2 (TNF receptor-associated factor 2 [Source:MGI Symbol;Acc:MGI:101835]) HSP 1 Score: 48.1358 bits (113), Expect = 5.685e-6 Identity = 44/168 (26.19%), Postives = 69/168 (41.07%), Query Frame = 2 Query: 86 TKMNKLELTQ-----QVLGSEYPPSFFCTICQQLLENPSKTDCGCRTCQRCL------VKFIAISKERKCRKC--RSLMLDNVDII-----LRDNESNREMSKIKMKCLNEGCVCVLRMSNLRSHMNEFCSWSNYQCSDCGXXXXXXXXXXXXSNQCPMKLELCTHCQ 535 T LEL Q +LG+ + C+ C+ +L P + CG R C CL ++ S + C C L + + I+ DN + RE+ + C N+GC + S C + +C C ++L EKE H +CP + C HC+ Sbjct: 7 TSPGSLELLQPGFSKTLLGTRLEAKYLCSACKNILRRPFQAQCGHRYCSFCLTSILRCASILSSSGPQNCAACVYEGLYEEGISILESSSAFPDNAARREVESLPAVCPNDGCTWKGTLKEYESCHEGLCPFLLTECPACKGLVRLSEKEHHTEQECPKRSLSCQHCR 174
BLAST of TNF receptor-associated factor vs. UniProt/SwissProt
Match: sp|Q28DL4|TRAF6_XENTR (TNF receptor-associated factor 6 OS=Xenopus tropicalis OX=8364 GN=traf6 PE=2 SV=1) HSP 1 Score: 62.003 bits (149), Expect = 1.141e-9 Identity = 54/216 (25.00%), Postives = 93/216 (43.06%), Query Frame = 2 Query: 137 PP---SFFCTICQQLLENPSKTDCGCRTCQRCLVKFIAISKERKCRKCRSLMLDNVDIILRDNESNREMSKIKMKCLNEGCVCVLRMSNLRSHMNEFCSWSNYQCSDCGXXXXXXXXXXXXSNQCPMKLELCTHCQNYFPLRILRNFHINHLNITDRMCSNWSGECPYQCSSTFHNSLKLHFS-ECLLVELPCPIY--NCGRMFKRVDYYDHVTNF 766 PP + C IC L +T CG R C+ C++K I + + SLM + + DN + RE+ +++KC ++GC + + +L H+ C ++ +CS C ++H +CP + C +C L +NH D+ C C Y ++ + H+S +C + +PC Y C +R D H+ F Sbjct: 64 PPLESKYECPICLMALREAVQTPCGHRFCKACILKSIRDAGHKCPVDNESLMENQ---LFPDNFAKREILSLRVKCPSQGCTETMELRHLERHLVR-CDFAGVECSQCQSSFPKYSLQKHKFEECPRRQIFCENCAVAMALED----KLNH----DQTCPLAYVTCEYCQTNLIREQMPAHYSMDCTMAPIPCMYYEFGCTEKMQRNDLARHLQEF 267
BLAST of TNF receptor-associated factor vs. UniProt/SwissProt
Match: sp|Q60803|TRAF3_MOUSE (TNF receptor-associated factor 3 OS=Mus musculus OX=10090 GN=Traf3 PE=1 SV=2) HSP 1 Score: 60.8474 bits (146), Expect = 2.518e-9 Identity = 53/202 (26.24%), Postives = 95/202 (47.03%), Query Frame = 2 Query: 146 FFCTICQQLLENPSKTDCGCRTCQRCLVKFIAISKERKCRKCRSLMLDNVDIILRDNESNREMSKIKMKCLNE--GCVCVLRMSNLRSHMNEFCSWSNYQC--SDCGXXXXXXXXXXXXSNQCPMKLELCTHCQNYFPLRILRNFHINHLNITDRMCSNWSGECPYQCS--STFHNSLKLHFSECLLVELPCPIYNCGRMFK 733 + C C+ +L NP +T+CG R C+ C+ ++ S KC C+ ++ D + +DN RE+ +++ C NE GC L + +L H+ C + C +DC +++ + +H+ C + C+HC++ P+ L+ D C CP++CS + + L H SEC+ C G +F+ Sbjct: 50 YKCEKCRLVLCNPKQTECGHRFCESCMAALLS-SSSPKCTACQESIIK--DKVFKDNCCKREILALQVYCRNEGRGCAEQLTLGHLLVHLKNECQFEELPCLRADCKEKVLRKDLRDHVEKACKYREATCSHCKSQVPMIKLQKHE-------DTDCPCVVVSCPHKCSVQTLLRSELSAHLSECVNAPSTCSFKRYGCVFQ 241
BLAST of TNF receptor-associated factor vs. UniProt/SwissProt
Match: sp|Q6DJN2|TRF6B_XENLA (TNF receptor-associated factor 6-B OS=Xenopus laevis OX=8355 GN=traf6-b PE=2 SV=1) HSP 1 Score: 59.3066 bits (142), Expect = 9.516e-9 Identity = 51/216 (23.61%), Postives = 96/216 (44.44%), Query Frame = 2 Query: 137 PP---SFFCTICQQLLENPSKTDCGCRTCQRCLVKFIAISKERKCRKCRSLMLDNVDIILRDNESNREMSKIKMKCLNEGCVCVLRMSNLRSHMNEFCSWSNYQCSDCGXXXXXXXXXXXXSNQCPMKLELCTHCQNYFPLRILRNFHINHLNITDRMCSNWSGECPYQCSSTFHNSLKLHFS-ECLLVELPCPIY--NCGRMFKRVDYYDHVTNF 766 PP + C IC L +T CG R C+ C+VK + + KC ++++N + DN + RE+ +K+KC ++GC + + +L H+ + C +++ +CS C E+H+ ++C + C +C + + +C C Y ++ + H+S +C + +PC Y C +R D H+ +F Sbjct: 64 PPLESKYECPICLMALREAVQTPCGHRFCKACIVKSLRDAG-HKCPVDNEILMENQ--LFPDNFAKREILSLKVKCPSQGCTETMELRHLERHLGQ-CQFASVECSQCQGSFPKSRLEKHMEHECGRRKIFCDNCGLAMAYEDMSGHEL--------ICPLAYVTCEYCQTNLIREQMPSHYSMDCTMAPIPCMYYEFGCTEKMQRNDLARHLQDF 267
BLAST of TNF receptor-associated factor vs. UniProt/SwissProt
Match: sp|Q13114|TRAF3_HUMAN (TNF receptor-associated factor 3 OS=Homo sapiens OX=9606 GN=TRAF3 PE=1 SV=2) HSP 1 Score: 58.151 bits (139), Expect = 2.409e-8 Identity = 52/202 (25.74%), Postives = 93/202 (46.04%), Query Frame = 2 Query: 146 FFCTICQQLLENPSKTDCGCRTCQRCLVKFIAISKERKCRKCRSLMLDNVDIILRDNESNREMSKIKMKCLNE--GCVCVLRMSNLRSHMNEFCSWSNYQC--SDCGXXXXXXXXXXXXSNQCPMKLELCTHCQNYFPLRILRNFHINHLNITDRMCSNWSGECPYQCS--STFHNSLKLHFSECLLVELPCPIYNCGRMFK 733 + C C +L +P +T+CG R C+ C+ ++ S KC C+ ++ D + +DN RE+ +++ C NE GC L + +L H+ C + C DC +++ + +H+ C + C+HC++ P+ L+ D C CP++CS + + L H SEC+ C G +F+ Sbjct: 51 YKCEKCHLVLCSPKQTECGHRFCESCMAALLS-SSSPKCTACQESIVK--DKVFKDNCCKREILALQIYCRNESRGCAEQLMLGHLLVHLKNDCHFEELPCVRPDCKEKVLRKDLRDHVEKACKYREATCSHCKSQVPMIALQKHE-------DTDCPCVVVSCPHKCSVQTLLRSELSAHLSECVNAPSTCSFKRYGCVFQ 242
BLAST of TNF receptor-associated factor vs. UniProt/SwissProt
Match: sp|Q3MV19|TRF6A_XENLA (TNF receptor-associated factor 6-A OS=Xenopus laevis OX=8355 GN=traf6-a PE=1 SV=1) HSP 1 Score: 51.2174 bits (121), Expect = 4.168e-6 Identity = 49/216 (22.69%), Postives = 97/216 (44.91%), Query Frame = 2 Query: 137 PP---SFFCTICQQLLENPSKTDCGCRTCQRCLVKFIAISKERKCRKCRSLMLDNVDIILRDNESNREMSKIKMKCLNEGCVCVLRMSNLRSHMNEFCSWSNYQCSDCGXXXXXXXXXXXXSNQCPMKLELCTHCQNYFPLRILRNFHINHLNITDRMCSNWSGECPYQCSSTFHNSLKLHFS-ECLLVELPCPI--YNCGRMFKRVDYYDHVTNF 766 PP + C IC L +T CG R C+ C++K + + KC ++++ + DN + RE+ +++KC N GC + + +L H+ + C +++ +CS C L ++H+ ++C + C +C L + H + +C C Y ++ + H+S +C + +PC + C +R + H+ +F Sbjct: 64 PPLESKYECPICLMALREAVQTPCGHRFCKACILKSLR-NAGHKCPVDNEILMEKQ--LFPDNFAKREILSLRVKCPNLGCTDTMELRHLEHHLVQ-CQFASVECSQCQGSFLKLLLDKHMEHECGRRRTFCDNCG----LAMAYEDKSGH----ELICPMAYVTCDYCQTNLIREQMPAHYSMDCTMAPIPCMYCEFGCREKMQRHNLAGHLQDF 267
BLAST of TNF receptor-associated factor vs. TrEMBL
Match: T1DBK6 (TRAF-4 OS=Dendrocoelum lacteum OX=27895 PE=2 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 1.194e-17 Identity = 64/216 (29.63%), Postives = 118/216 (54.63%), Query Frame = 2 Query: 152 CTICQQLLENPSKTDCGCRTCQRCLVKFIAISKERKC----RKCRSLMLDNVDIILRDNESNREMSKIKMKCLNEGCVCVLRMSNLRSHMNEFCSWSNYQCSDCGXXXXXXXXXXXXSNQCPMKLELCTHCQNYFPLRILRNFHINHLNITDR-MCSNWSGECPYQCSSTFHNSLKLHFSECLLVELPCP--IYNCGRMFKRVDYYDHV--TNFDH 772 C +CQ +L + +TDCGCR C+ C+ ++ + E++C CRS++ + D +N+E+S +K+KCL EGCV + +++ H++ FC + N CS CG E + E+ HL+N+C ++ LC +C+ L + ++ +HL R +C + CPY C+ +L H C L CP +++C ++ + +H+ ++++H Sbjct: 31 CVMCQDILLDAIQTDCGCRYCKECIDNYLE-NGEKECVAEYEDCRSVITSYI----YDRATNKEISLLKVKCLYEGCVFEDTLKSIKGHLD-FCEYRNEMCSLCGMEYIIKEESNHLANECLLREVLCQYCRT---LLTFKEYNESHLCFESRDLCGKYEAICPYGCTGESKVNLLHHRKSCENKPLECPLHVFDCKQLIPKDQMTEHLNTSSYEH 237
BLAST of TNF receptor-associated factor vs. TrEMBL
Match: T1D122 (TRAF-5 OS=Dendrocoelum lacteum OX=27895 PE=2 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 2.294e-17 Identity = 58/190 (30.53%), Postives = 96/190 (50.53%), Query Frame = 2 Query: 152 CTICQQLLENPSKTDCGCRTCQRCLVKFIAISKERKCRKCRSLMLDNVDIILRDNESNREMSKIKMKCLNEGCVCVLRMSNLRSHMNEFCSWSNYQCSDCGXXXXXXXXXXXXSNQCPMKLELCTHCQNYFPLRILRNFHINHLNITDRMCSNWSGECPYQCSSTFHNSLKLHFSECLLVELPCPIYNCG 721 C IC+Q++ P+++ CGCR C +C+ +FI+ K RKC C ++ V +I RD +E+ +++++C EGC + H C + +C CG+E KE+H +C + C C L+N H N+ + +C W +CPYQC+ + ++K H S C PCP+ + G Sbjct: 22 CGICKQIMFEPTQSQCGCRFCSKCIEEFISKEK-RKCPICTDQNIEKVSLI-RDKAIEKEIMRMRVQCPQEGCGENIMYREWGGH-ERACVYGVNECEKCGEEYVRSRKEDHEREECGESVVKCDDCGKEMRREDLKNVHKNYDGDEESLCEKWMCKCPYQCTEEQYVNMKEHASSCRERCTPCPLKDIG 208
BLAST of TNF receptor-associated factor vs. TrEMBL
Match: D5JG60 (TNF receptor-associated factor-2-like protein B OS=Dugesia japonica OX=6161 GN=TRAF-2B PE=2 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 1.910e-16 Identity = 66/204 (32.35%), Postives = 100/204 (49.02%), Query Frame = 2 Query: 152 CTICQQLLENPSKTDCGCRTCQRCLVKFIAISKERKCRKCRSLMLDNVDIILRDNESNREMSKIKMKCLNEGCVCVLRMSNLRSHMNEFCSWSNYQCSDCGXXXXXXXXXXXXSNQCPMKLELCTHCQNYFPLRILRNFHIN-HLNITDRMCSNWSGECPYQCSSTFHNSLKLHFSECLLVELPCPI--YNCGRMFKRVDYYDH 754 C IC QLL +TDCGCR C+ CL ++ A K KC + ++ I+ DN NRE+ K+ +KCL GC + ++ H++ C C C +E+ +E +EH +CPM+L CTHC L H+N H T+++C+ G+CPY+C + +L H C + C C R+ + D H Sbjct: 30 CIICSQLLLEALQTDCGCRYCKECLKEYQAKGK----TKCLTDGCGDLGNIIPDNAVNREIGKLTVKCLFPGCEHSELLKDIGDHLDS-CIHQTINCKSCNEELTKIELKEHTEKKCPMRLVSCTHCGEEMEYSNLTELHLNVH---TEKLCAKLVGKCPYKCDNGKEVNLLDHRKSCSKKPVTCLFSEIGCNRVMTKEDLIKH 225
BLAST of TNF receptor-associated factor vs. TrEMBL
Match: A0A1I8J887 (Uncharacterized protein OS=Macrostomum lignano OX=282301 PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 8.482e-14 Identity = 68/258 (26.36%), Postives = 109/258 (42.25%), Query Frame = 2 Query: 56 YKSLSDLLERTKMNKLELTQQVLG----SEYPPSFFCTICQQLLENPSKTDCGCRTCQRCLVKFIAISKERKC----RKC--RSLMLDNVDI------ILRDNESNREMSKIKMKCLN--EGCVCVLRMSNLRSHMNEFCSWSNYQCSDCGXXXXXXXXXXXXSNQCPMKLELCTHCQNYFPLRILRNFHINHLNI-TDRMCSNWSGECPYQCSSTF----HNSLKLHFSECLLVELPCPIYN--CGRMFKRVDYYDH 754 +K SDL R+ + EL V S+ P C+ C + L N +T GCR CQ C+ + ++R C C R D V+I D + RE++K++++C N GC L + + H+ + C W +++C C + + + + H S++C + E C C L +H N+ +D C +S CP+ CS H SEC + C + C M +R D H Sbjct: 1715 FKPRSDLNCRSSLRMSELPSSVSAARPVSDLPAHLQCSSCSKPLFNARQTPHGCRLCQACVTGLLHEVEKRPCPGHTEACTLRGEGDDGVEIEVSQATCFPDMATRREVAKLRVRCPNCDAGCSVQLEWARMDQHVQQSCDWHSFRCEQCKELILKKDMQRHTSSECRHRKETCDLCSQ---LVTHSEMETSHRNLQSDVCCPRFSARCPH-CSERSTPMDRRGYVAHLSECPERPVECKYSHLGCRAMVRRSDLERH 1968
BLAST of TNF receptor-associated factor vs. TrEMBL
Match: A0A1I8G6V3 (Uncharacterized protein OS=Macrostomum lignano OX=282301 PE=3 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 2.629e-13 Identity = 68/258 (26.36%), Postives = 108/258 (41.86%), Query Frame = 2 Query: 56 YKSLSDLLERTKMNKLELTQQVLG----SEYPPSFFCTICQQLLENPSKTDCGCRTCQRCLVKFIAISKERKC----RKC--RSLMLDNVDI------ILRDNESNREMSKIKMKCLN--EGCVCVLRMSNLRSHMNEFCSWSNYQCSDCGXXXXXXXXXXXXSNQCPMKLELCTHCQNYFPLRILRNFHINHLNI-TDRMCSNWSGECPYQCSSTF----HNSLKLHFSECLLVELPCPIYN--CGRMFKRVDYYDH 754 +K SDL R+ + EL V S+ P C+ C + L N +T GCR CQ C+ + ++R C C R D V+I D + RE++K++++C N GC L + + H+ + C W + +C C + + + + H S++C + E C C L +H N+ +D C +S CP+ CS H SEC + C + C M +R D H Sbjct: 1616 FKPRSDLNCRSSLRMSELPSSVSAARPVSDLPAHLQCSSCSKPLFNARQTPHGCRLCQACVTGLLHEVEKRPCPGHTEACTLRGEGDDGVEIEVSQATCFPDMATRREVAKLRVRCPNCDAGCSVQLEWARMDQHVQQSCDWHSLRCEQCKELILKKDMQRHTSSECRHRKETCDLCSQ---LVTHSEMETSHRNLQSDVCCPRFSARCPH-CSERSTPMDRRGYVAHLSECPERPVECKYSHLGCRAMVRRSDLERH 1869
BLAST of TNF receptor-associated factor vs. Ensembl Cavefish
Match: traf2a (TNF receptor-associated factor 2-like [Source:NCBI gene;Acc:103036375]) HSP 1 Score: 56.6102 bits (135), Expect = 8.473e-9 Identity = 44/180 (24.44%), Postives = 78/180 (43.33%), Query Frame = 2 Query: 95 NKLELTQQVLGSEYPPSFFCTICQQLLENPSKTDCGCRTCQRCLVKFIAISKERKCRKC-RSLMLDNVDIILR------DNESNREMSKIKMKCLNEGCVCVLRMSNLRSHMNEFCSWSNYQCSDCGXXXXXXXXXXXXSNQCPMKLELCTHCQNYFPLRILRNFHINHLNITDRMCSNW 613 NK +++L ++ C ICQ++L P + CG R C C K ++ S +KC C + + + IL+ DN + RE+ ++ C+NEGC + + C + C C + ++ E E H +CP + C +C+ FH ++ D +C + Sbjct: 15 NKPGFPRKILANKLEDKHLCNICQKILRRPFQAQCGHRFCSYCFNKTVS-SGPQKCSACIKEDIFEEPTSILKQGCAFPDNAAKREVEALEAVCINEGCSWTGTIKEYEATHEGQCDFMIIPCPSCKELLRANELERHNERECPERTLNCKYCKE--------PFHFKNIKAHDEICPKY 185
BLAST of TNF receptor-associated factor vs. Ensembl Cavefish
Match: traf1 (TNF receptor-associated factor 1-like [Source:NCBI gene;Acc:103045252]) HSP 1 Score: 52.373 bits (124), Expect = 1.717e-7 Identity = 37/141 (26.24%), Postives = 65/141 (46.10%), Query Frame = 2 Query: 137 PPSFFCTICQQLLENPSKTDCGCRTCQRCLVKFIAISKERKCRKCR--------SLMLDNVDIILRDNESNREMSKIKMKCLNEGCVCVLRMSNLRSHMNEFCSWSNYQCS-DCGXXXXXXXXXXXXSNQCPMKLELCTHC 532 P F C+ C +L +T CG R C+ C++ + +K+ C KC+ S M+ +D DN N+E+ ++++ C+N+GC + + H ++ C ++ C+ CG + HL CP C C Sbjct: 24 PVHFLCSSCNNVLNEAHQTQCGHRYCRACVMWLLRNNKDLICTKCKEDPGSESDSSMMLTLDHFFSDNAINKEIQELRVHCVNQGCGWRSTLKDFEDHQSQ-CEYALIPCNIGCGLMVLRKTLATHLEKGCPNNKTTCQVC 163
BLAST of TNF receptor-associated factor vs. Ensembl Cavefish
Match: traf1 (TNF receptor-associated factor 1-like [Source:NCBI gene;Acc:103045252]) HSP 1 Score: 51.9878 bits (123), Expect = 2.426e-7 Identity = 37/141 (26.24%), Postives = 65/141 (46.10%), Query Frame = 2 Query: 137 PPSFFCTICQQLLENPSKTDCGCRTCQRCLVKFIAISKERKCRKCR--------SLMLDNVDIILRDNESNREMSKIKMKCLNEGCVCVLRMSNLRSHMNEFCSWSNYQCS-DCGXXXXXXXXXXXXSNQCPMKLELCTHC 532 P F C+ C +L +T CG R C+ C++ + +K+ C KC+ S M+ +D DN N+E+ ++++ C+N+GC + + H ++ C ++ C+ CG + HL CP C C Sbjct: 24 PVHFLCSSCNNVLNEAHQTQCGHRYCRACVMWLLRNNKDLICTKCKEDPGSESDSSMMLTLDHFFSDNAINKEIQELRVHCVNQGCGWRSTLKDFEDHQSQ-CEYALIPCNIGCGLMVLRKTLATHLEKGCPNNKTTCQVC 163
BLAST of TNF receptor-associated factor vs. Ensembl Nematostella
Match: EDO45915 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RRA4]) HSP 1 Score: 58.5362 bits (140), Expect = 5.482e-10 Identity = 57/204 (27.94%), Postives = 93/204 (45.59%), Query Frame = 2 Query: 143 SFFCTICQQLLENPSK-TDCGCRTCQRCLVKFIAISKERKCRKCRSLMLDNVDIILRDNESNREMSKIKMKCL--NEGCVCVLRMSNLRSHMNEFCSWSNYQC-SDCGXXXXXXXXXXXXSNQCPMKLELCTHCQNYFPLRILRNFHINHLNITDRMCSNWSGECPYQCSST--FHNSLKLHFS-ECLLVELPCPIYNCGRMFK 733 SF C +C L +P + T CG R CQ C+ I + R+ R + NV I DN +R++ + + C +GC +S+L H+ C+ S +C DCG ++ + E H +C +L CTHC + +N+ + C+++ CP C + +L +H + EC L+ +PC G FK Sbjct: 15 SFECPVCLMALRDPVQVTPCGHRVCQTCIKPII---RNRRPRCPLDNLTLNVGKIFPDNACHRQILSMDILCPHHGDGCEWQGTISDLEKHLERGCNLSEVRCPKDCGASVERGKLEGHYP-ECSRRLVNCTHCN--------KEVVFADMNVHLQSCASFPISCPLTCGAKDLTKEALAVHLNQECPLLVIPCRFAEAGCTFK 206
BLAST of TNF receptor-associated factor vs. Ensembl Nematostella
Match: EDO32849 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7STV3]) HSP 1 Score: 56.225 bits (134), Expect = 3.891e-9 Identity = 59/220 (26.82%), Postives = 95/220 (43.18%), Query Frame = 2 Query: 80 ERTKMNKLELTQQVLGSEY---PP----SFFCTICQQLLENPSK-TDCGCRTCQRCLVKFIAISKERKCRKCRSLMLDNVDIILRDNESNREMSKIKMKCLNE--GCVCVLRMSNLRSHMNEFCSWSNYQCS-DCGXXXXXXXXXXXXSNQCPMKLELCTHCQNYFPLRILRNFHINHLNITDRMCSNWSGECPYQCSSTFHNSLKLHFSECLLVELPCP 706 + KM ++E ++ L Y PP C +C+ + +P + +CG R CQ C K I S E KC KC + D + + D +M+++ +C+N GC + + + +H E C +S+ C DCG + + K++HL CP K+ C +C + R LR + K H +CLL+ LPCP Sbjct: 24 DEDKMPEIEKVERPLTKNYFKKPPFEERKHLCPVCEDIFVSPVQIKECGHRLCQHCY-KTIWRSPEPKCPKCSGDLDDKIPDV--DQAFENDMNELPCRCINHEWGCKVEVPFTQMITHKGE-CEYSDILCDNDCGAKFQRRFKQKHLDKDCPKKIISCPYCDD----RHLR------------------------------ENKKEHLEDCLLIPLPCP 205
BLAST of TNF receptor-associated factor vs. Ensembl Nematostella
Match: EDO46837 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RP22]) HSP 1 Score: 46.2098 bits (108), Expect = 1.305e-6 Identity = 31/103 (30.10%), Postives = 49/103 (47.57%), Query Frame = 2 Query: 143 SFFCTICQQLLENPSKTDCGCRTCQRCLVKFIAISKERKCRKCRSLMLDNVDIILRDNESNREMSKIKMKCLNEGCVCVLRMSNLRSHMNEFCSWSNYQCSDC 451 + C IC +LEN T CG C+ CL +++ + + C CRS +L I + + + + + GC V RM N++SH+ E C + QC C Sbjct: 15 NLLCNICVGVLENAITTICGHSFCESCLETWLSRPEVQSCPSCRSHVLSLDLIPVHAIRGLVDGLLVHCENADNGCDIVTRMDNMKSHL-ESCPYGLVQCKAC 116
BLAST of TNF receptor-associated factor vs. Ensembl Medaka
Match: traf2b (TNF receptor associated factor 2 [Source:NCBI gene;Acc:101159764]) HSP 1 Score: 48.1358 bits (113), Expect = 4.114e-6 Identity = 48/234 (20.51%), Postives = 85/234 (36.32%), Query Frame = 2 Query: 119 VLGSEYPPSFFCTICQQLLENPSKTDCGCRTCQRCLVKFIAISKERKCRKCRS-------LMLDNVDIILRDNESNREMSKIKMKCLNEGCVCVLRMSNLRSHMNEFCSWSNYQCSDCGXXXXXXXXXXXXSNQCPMKLELCTHCQNYFPLRILRNFHINHLNITDRMCSNWSGECPYQCSSTFHNSLKL-----HFSECLLVELPCPIYNCG----RMFKRVDYYDHVTNFDH 772 VL + C C Q+L P + CG R C C + + S + C+ CR + + N DN + RE++ + +CLN+GC + + C + QC C + +K+ H +C + C +C+ F+ + D +C + P QC + H C + CP G ++ ++H + +H Sbjct: 19 VLSVPMEDKYKCQQCLQVLRKPVQAQCGHRFCVHCFRQLTS-SGPKPCQACRKEEIYEEPMSILNSSEAFPDNAAGREIASLPARCLNQGCDWTGSIKEYEAKHEGRCEFEQIQCEACQALVLRKDKDRHNDRECEERTLNCKYCKV--------TFNFKDIKAHDEICQKF----PLQCKDCGKKKIPREKFNDHAKSCAKSKSACPFSEVGCKSVVENGKISEHEHSSTMEH 239
BLAST of TNF receptor-associated factor vs. Ensembl Medaka
Match: traf2b (TNF receptor associated factor 2 [Source:NCBI gene;Acc:101159764]) HSP 1 Score: 48.1358 bits (113), Expect = 4.568e-6 Identity = 48/234 (20.51%), Postives = 85/234 (36.32%), Query Frame = 2 Query: 119 VLGSEYPPSFFCTICQQLLENPSKTDCGCRTCQRCLVKFIAISKERKCRKCRS-------LMLDNVDIILRDNESNREMSKIKMKCLNEGCVCVLRMSNLRSHMNEFCSWSNYQCSDCGXXXXXXXXXXXXSNQCPMKLELCTHCQNYFPLRILRNFHINHLNITDRMCSNWSGECPYQCSSTFHNSLKL-----HFSECLLVELPCPIYNCG----RMFKRVDYYDHVTNFDH 772 VL + C C Q+L P + CG R C C + + S + C+ CR + + N DN + RE++ + +CLN+GC + + C + QC C + +K+ H +C + C +C+ F+ + D +C + P QC + H C + CP G ++ ++H + +H Sbjct: 26 VLSVPMEDKYKCQQCLQVLRKPVQAQCGHRFCVHCFRQLTS-SGPKPCQACRKEEIYEEPMSILNSSEAFPDNAAGREIASLPARCLNQGCDWTGSIKEYEAKHEGRCEFEQIQCEACQALVLRKDKDRHNDRECEERTLNCKYCKV--------TFNFKDIKAHDEICQKF----PLQCKDCGKKKIPREKFNDHAKSCAKSKSACPFSEVGCKSVVENGKISEHEHSSTMEH 246
BLAST of TNF receptor-associated factor vs. Planmine SMEST
Match: SMESG000025867.1 (SMESG000025867.1) HSP 1 Score: 435.647 bits (1119), Expect = 6.605e-157 Identity = 226/227 (99.56%), Postives = 226/227 (99.56%), Query Frame = 2 Query: 92 MNKLELTQQVLGSEYPPSFFCTICQQLLENPSKTDCGCRTCQRCLVKFIAISKERKCRKCRSLMLDNVDIILRDNESNREMSKIKMKCLNEGCVCVLRMSNLRSHMNEFCSWSNYQCSDCGXXXXXXXXXXXXSNQCPMKLELCTHCQNYFPLRILRNFHINHLNITDRMCSNWSGECPYQCSSTFHNSLKLHFSECLLVELPCPIYNCGRMFKRVDYYDHVTNFDH 772 MNKLELTQQVLGSEYPPSFFCTICQQLLENPSKTDCGCRTCQRCLVKFIAISKERKCRKCRSLMLDNVDIILRDNESNREMSKIKMKCLNEGCVCVLRMSNLRSHMNEFCSWSNYQCSDCGKEMKLLEKEEHLSNQCPMKLELCTHCQNYFPLRILRNFHINHLNITDRMCSNWSGECPYQCSSTFHNSLKLHFSEC LVELPCPIYNCGRMFKRVDYYDHVTNFDH Sbjct: 1 MNKLELTQQVLGSEYPPSFFCTICQQLLENPSKTDCGCRTCQRCLVKFIAISKERKCRKCRSLMLDNVDIILRDNESNREMSKIKMKCLNEGCVCVLRMSNLRSHMNEFCSWSNYQCSDCGKEMKLLEKEEHLSNQCPMKLELCTHCQNYFPLRILRNFHINHLNITDRMCSNWSGECPYQCSSTFHNSLKLHFSECPLVELPCPIYNCGRMFKRVDYYDHVTNFDH 227
BLAST of TNF receptor-associated factor vs. Planmine SMEST
Match: SMESG000018435.1 (SMESG000018435.1) HSP 1 Score: 94.7449 bits (234), Expect = 6.900e-22 Identity = 66/211 (31.28%), Postives = 109/211 (51.66%), Query Frame = 2 Query: 140 PSFFCTICQQLLENPSKTDCGCRTCQRCLVKFIAISKERKCRKCRSLMLDNVDIILRDNESNREMSKIKMKCLNEGCVCVLRMSNLRSHMNEFCSWSNYQCSDCGXXXXXXXXXXXXSNQCPMKLELCTHCQNYFPLRILRNFHIN-HLNITDRMCSNWSGECPYQCSSTFHNSLKLHFSECLLVELPCPIYNCGRMF--KRVDYYDHVTN 763 P F C+ C ++L +PS+T CGCR C C+ K A S E C C++ + + I++D +RE+S ++++CL GC + + L H+ C W C C + KE HL +C + C+ C + FH+N ++ D++C N SG+CPY+C+S HN+++ H +C C +Y G F +VD H+++ Sbjct: 30 PRFVCSKCHEILIDPSQTQCGCRFCYSCINKHFA-SCENICPNCQTEIPNE---IIKDRAIDREISNLEIRCLLNGCDHIGQFKYLDDHL-RMCKWRLENCDKCPQTYPKQMKEIHLQEECVNGICKCSKCGLEMTRHEYQTFHVNINVECIDKLCENLSGKCPYECNSEIHNNIRNHLYDCPNKVTKCFLYELGCQFVGNQVDMSKHLSD 235
BLAST of TNF receptor-associated factor vs. Planmine SMEST
Match: SMESG000039087.1 (SMESG000039087.1) HSP 1 Score: 94.3597 bits (233), Expect = 7.531e-22 Identity = 73/240 (30.42%), Postives = 111/240 (46.25%), Query Frame = 2 Query: 53 PYKSLSDLLERTKMNKLELTQQVLGSEYPPSFFCTICQQLLENPSKTDCGCRTCQRCLVKFIAISKE--RKCRKCRSLMLDNVDIILRDNESNREMSKIKMKCLNEGCVCVLRMSNLRSHMNEFCSWSNYQCSDCGXXXXXXXXXXXXSNQCPMKLELCTHCQNYFPLRILRNFHINHLNITDR-MCSNWSGECPYQCSSTFHNSLKLHFSECLLVELPCPI--YNCGRMFKRVDYYDHV 757 P++SL+ L E Q L + P ++FC IC+ +L +P +T CGCR C+ C+VK ++ S CR+ +L+ I D ++R + +K+KC + C + + N+ SH NE C + +C C K+ H +C + E+C C FPL IL + H NI R +C + CPY+C SL H C CP C +F VD H+ Sbjct: 22 PFQSLNSKLYNCHPEVTEQGFQFL-KKVPSAYFCVICKNVLTDPVQTSCGCRYCRSCIVKHLSFSSYCCNDSEDCRNELLELETNIRTDAAASRFIKALKVKCTTKDCEYITTLENINSHRNE-CLFVIVECDQCSKKFTRNYLLTHKKIECEKRKEICQFCGISFPLEILP---LIHNNIHHRDLCVKYLSLCPYKCGMKEEISLVEHRKICFSKPFLCPYIEVGCDYLFFTVDLNKHM 256
BLAST of TNF receptor-associated factor vs. Planmine SMEST
Match: SMESG000018409.1 (SMESG000018409.1) HSP 1 Score: 92.0485 bits (227), Expect = 5.274e-21 Identity = 66/212 (31.13%), Postives = 110/212 (51.89%), Query Frame = 2 Query: 140 PSFFCTICQQLLENPSKTDCGCRTCQRCLVKFIAISKERKCRKCRSLMLDNVDIILRDNESNREMSKIKMKCLNEGCVCVLRMSNLRSHMNEFCSWSNYQCSDCGXXXXXXXXXXXXSNQCPMKLELCTHCQNYFPLRILRNFHINHLNI--TDRMCSNWSGECPYQCSSTFHNSLKLHFSECLLVELPCPIYNCGRMF--KRVDYYDHVTN 763 P F C+ C ++L +PS+T CGCR C C+ K A S C C++ + + I++D +RE+S ++++CL GC + + L H+ + C W C C + KE HL +C + C+ C + FH+N +N+ D++C N SG+CPY+C+S HN+++ H +C C +Y G F +VD H+++ Sbjct: 28 PRFVCSKCHEILIDPSQTQCGCRFCYSCINKHFA-SCGNICPNCQTEIPNE---IIKDRAIDREISNLEIRCLLNGCDHIGQFKYLDDHL-KMCKWRLENCDKCHQTYPKQMKEIHLQEECVNGICKCSKCGLEMTRHEYQTFHVN-INVECIDKLCENLSGKCPYECNSEIHNNIRNHLYDCPNKVTKCFLYELGCRFVGNQVDMSKHLSD 233
BLAST of TNF receptor-associated factor vs. Planmine SMEST
Match: SMESG000027149.1 (SMESG000027149.1) HSP 1 Score: 81.6481 bits (200), Expect = 2.056e-18 Identity = 56/204 (27.45%), Postives = 105/204 (51.47%), Query Frame = 2 Query: 128 SEYPPSFFCTICQQLLENPSKTDCGCRTCQRCLVKFIAISKERKCRKCRSLMLDNVDIILRDNESNREMSKIKMKCLNEGCVCVLRMSNLRSHMNEFCSWSNYQCSDCGXXXXXXXXXXXXSNQCPMKLELCTHCQNYFPLRILRNFHINHLNITDRMCSNWSGECPYQCSSTFHNSLKLHFSECLLVELPCPI--YNCGRMFK 733 + P C +C ++L N +T+CGCR C +C+ +++A S RKC C + +L N + + D + RE++++++ C + C ++ ++ HMN C + C C +++ + +++H N C M++ C +CQ L + H+N N + MC ++ CP C+ ++K H EC+ + CP NC + K Sbjct: 7 TNAPDRCKCKLCFKVLRNAKQTECGCRVCGQCIQEYLA-SGSRKCPSCDNYVLLNENKLFDDKATVREINQLEVVCPLDLCQFRSKLQSIGVHMNS-CEYRVIDCRKCKQKITAIHEQDHNINLCEMRIVTCEYCQRSIKLNEMIPIHLNPDN--EEMCDDYVSICPNNCNQKQQINIKRHLLECINKKKKCPFNQINCNTIDK 206 The following BLAST results are available for this feature:
BLAST of TNF receptor-associated factor vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 5
BLAST of TNF receptor-associated factor vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of TNF receptor-associated factor vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of TNF receptor-associated factor vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 5
BLAST of TNF receptor-associated factor vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 3
BLAST of TNF receptor-associated factor vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 5
BLAST of TNF receptor-associated factor vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of TNF receptor-associated factor vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of TNF receptor-associated factor vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 3
BLAST of TNF receptor-associated factor vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of TNF receptor-associated factor vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of TNF receptor-associated factor vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 3
BLAST of TNF receptor-associated factor vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 2
BLAST of TNF receptor-associated factor vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30012745 ID=SMED30012745|Name=TNF receptor-associated factor|organism=Schmidtea mediterranea sexual|type=transcript|length=784bpback to top protein sequence of SMED30012745-orf-1 >SMED30012745-orf-1 ID=SMED30012745-orf-1|Name=SMED30012745-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=228bp MNKLELTQQVLGSEYPPSFFCTICQQLLENPSKTDCGCRTCQRCLVKFIAback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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