SMED30012697

Overview


Name	SMED30012697
Smed ID	SMED30012697
Length (bp)	2283

Neoblast Clusters

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.

Expression of SMED30012697 (SMED30012697) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30012697 (SMED30012697) in cells (dots) of each of the 12 neoblast clusters.

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30012697 (SMED30012697) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30012697 (SMED30012697) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30012697

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 1

Expressed In	Reference Transcript	Gene Models	Published Transcript	Transcriptome	Publication	Specimen	Lifecycle	Evidence
parenchyma	SMED30012697	SMESG000051307.1	dd_Smed_v4_7335_1_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018

Note: Hover over icons to view figure legend

Alignments

SMED30012697 aligns in the following genomic locations:


Alignment Location	Alignment Score
v31.001533:57928..70841 +	8936

Homology

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BLAST of SMED30012697 vs. Ensembl Celegans
Match: K09F5.6 (pep chromosome:WBcel235:X:7719272:7725583:1 gene:WBGene00044698.1 transcript:K09F5.6.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:K09F5.6)

HSP 1 Score: 77.411 bits (189), Expect = 2.552e-14
Identity = 82/391 (20.97%), Postives = 153/391 (39.13%), Query Frame = 2

Query:  551 GNFANDGKSFG-KDEEFFHFILNENGKADIVMNNKERNCCKQKFLKLIFMELPPISYVLQVVAAYCYLIPKPFMDARQIFHKVLRPNQIWHTDLDIIFDPDHQ------------------HPEFTYYQQWSYIQPMTVAYFNFGFSLFLL---------SIQYSRVFWNVSKTFTLVLSFLMLTFSLHLLVEYCSLSMMIKIIENPL--IVSSSLRLELSVFTVLFLSILANLVLLFSF------TTVFHYGILQYG------DIMLHRHRRYRRQILNSSPHIVGSNQLDMSGPFSPCASENNYSESSIEPIFSKSHYSHILAVCFLVVVIVIKSPVIHSSFKHIYYFTSDSLTLVHMLISCLYVVSWLIVWFAFALRRTWNFKIKSTV 1597
            GN A D +    ++E       N+NG         E++ C     K+++  LPP+   L V+ A   LI +  M ++   H  +      +T+LD ++    Q                    E         + P+ +    FG  L ++         +I Y  VFW VSK F+++ S  ++ ++  ++  Y S S++ +I E  +  + +  L   L     L   I    V+L SF      TT+    +  YG      +++  +HR   R     + +          G +       +Y+      +    +  H+ A+  LV+V     P I++    +Y     +L L  ++I  +Y+ SW+++W    L+R W+F +   V
Sbjct:   80 GNIAGDNERLADREERVLEVSRNQNG---------EKSGCVHG-AKVLWQHLPPLPQQLHVIIAVAQLIAQQLMFSQLFRHGFVNSGDFLNTELDFLYQRSRQLATNLPIGETRLQGFRITADELAGLPVSPNLLPVLMHMKLFGIPLEMVNLFIALVAFAIAYPAVFWRVSKPFSVIFSLHLVIYAAQVIWGYLSFSILFRIQETNIHSVRAVGLGQYLGPIKPLGFHIYHPYVILGSFVVRLVMTTLAPMAMYSYGYNKLYANVLNVQHRNAARTSQGQAEY----------GDY----RRRSYTRVDGNKLCCDGYLPHMDAIALLVIVAGAIGPTIYALLI-LYQHEQKALILTCIIIDVVYMFSWILMWLGMTLKRDWDFNVTHKV 445

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BLAST of SMED30012697 vs. TrEMBL
Match: A0A1S3HJ55 (uncharacterized protein LOC106155296 OS=Lingula unguis OX=7574 GN=LOC106155296 PE=4 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 3.457e-26
Identity = 114/470 (24.26%), Postives = 191/470 (40.64%), Query Frame = 2

Query:  299 LRFTNQKMTKCK----KLWDIWFLTYLIVINLYLTYNAILNYLNFKV----NASDPVYGRNWDTNLTYLILECXXXXXXXXXXXXYTNILPVGNFANDGKSFGKDEEFFHFILNENGKADIVMNNKERNC--CKQKFLKLIFMELPPISYVLQVVAAYCYLIPKPFMDARQIFHKVLRPNQIWHTDLDIIFDPDHQHPEFTYYQQ-----------------------------WSYIQPMTVAYFNFGFSLFLLSIQYSRVFWNVSKTFTLVLSF-LMLTFSLHLLVEYCSLSMMIKIIENPLIVSSSLRLELSVFTVLFLSILANLVLLFSFTTVFHYGILQYGDIMLHRHRRYRRQILNSSPHIVGSNQLDMSGPFSPCASENNYSESSIEPIFSKSHYSHILAVCFLVVVIVIKSPVIHSSFKHIYYFTSDSLTLVHMLISCLYVVSWLIVWFAFALRRTWNFKIK 1588
            +  + +K+  C+      W IW+   +++   YLTY A+  Y  FK         P         L  L L C+              I  V N+ANDG   G++                +++ KE      + +F K  + ++ P++  L + AA+C L+P   + A++I H  L    +W TDLD++F  D + P+F  + Q                             W++    +  + NF  +L L +I+Y  VFW   K  T++ S  L L   LHL   +C  ++  K+  N  +    L L +S        IL N ++ FS  T+F YG L Y +  +  HR Y                      F   A +N            + +  H  A+  +V+ +  K PV +  +   Y  T D L L  +++  +Y+++W+I+WF F L++TW F I+
Sbjct:    1 MPLSEKKVCGCRIRFNSFWCIWYCAIVLIAQGYLTYLAVSRYSAFKSLHWKEDEMPSLEFTSYVALIALSLLCLPFFALAA-------IFKVENYANDGVRLGEE----------------ILSKKEARLRYLETRFGKRFWQQMGPVAQTLHIGAAFCLLLPHVLLQAQEIKHGYLSEVNMWATDLDVLFIRD-KIPQFWAFSQKASTNLTTNSTLEMITVNVTTEAPPTGVPWNHQSSPSFEFINFAAALILYNIRYPAVFWTTHKLLTVLFSGQLFLATVLHLF-SFCGFAVTYKLQVNNHL-HQGLELSMSHGGTAVAYILGNGIVFFSSITIFKYGYLFYNEQFIKMHRNYHA--------------------FLKYAMKNT----------CEGYIPHTAAMVMMVLSLACKGPVFY-DYVTTYRMTGDPLILTCIVMDAMYMMAWMILWFVFTLKQTWKFAIR 413

[Close]

BLAST of SMED30012697 vs. TrEMBL
Match: A0A267E669 (Uncharacterized protein (Fragment) OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig030458g3 PE=4 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.535e-25
Identity = 102/430 (23.72%), Postives = 187/430 (43.49%), Query Frame = 2

Query:  311 NQKMTKCK----KLWDIWFLTYLIVINLYLTYNAILNYLNFKVNASDPVYGRNWDTNLTYLILECXXXXXXXXXXXXYTNILPVGNFANDGKSFGKDEEFFHFILNENGKADIVMNNKERNCCKQKFLKLIFMELPPISYVLQVVAAYCYLIPKPFMDARQIFHKVLRPNQIWHTDLDIIFDPDHQHPEFTYYQQWSYIQPMTVAYFNFGFSLFLLSIQYSRVFWNVSKTFTLVLSFLMLTFSLHLLVEYCSLSMMIKIIENPLIVSSSLRLELSVFTVLFLSILANLVLLFSFTTVFHYGILQYGDIMLHRHRRYRRQILNSSPHIVGSNQLDMSGPFSPCASENNYSESSIEPIFSKSHYSHILAVCFLVVVIVIKSPVIHSSFKHIYYFTSDSLTLVHMLISCLYVVSWLIVWFAFALRRTWNFKIK 1588
            +Q M K +    K+W IW+   ++ +N +L Y+A   Y +F+  A        WD +     L  +I+ + LLP  +Y  +    N+A DG   G+D +     + E               C  + L+  FM   P + +L V+ A+C LIP P ++A +I H     ++IW T+LD I+ P           + S    +    FN   +L +L ++Y   FW  ++ F  + S ++    LH+++ Y + S++ K   +  +V+   ++ L    ++ L  + +L+LL +    F +G  Q    ML   R+YR  +   +   V    +      +PC    NY+              H+  +  +VV ++ K+PV+   +  +Y        L  ++   +Y+  W+ VWF    +  W F I+
Sbjct:   31 HQAMAKTRAKFDKMWRIWYAILVLALNAFLLYSAFQRYASFRAKA----LREQWDMSPMNFYLAMMILTVFLLPFFLYAALAKTANYAEDGVQIGRDRDCLRVAIAETSSG--AGAQATVGTCMSR-LRRHFM---PYTCLLHVLTAFCLLIPMPVLEAAEIHHAKRPSDEIWRTNLDFIYHP-----------KASATNSVCPEVFNLMLALAILLVRYPSTFWFSNRAFAFMFSVILCVCGLHIVLSYEATSVLFKASMSNGVVT---QVNLLPPAIIALHSIGDLLLLVANIAFFEFGYAQ----MLSNLRKYRNYLQLEASSSVSDRSISSCNDETPCWL--NYAP-------------HLAGILLMVVAVLCKAPVLW-DWVGLYRVHQQPAMLAAVVSGGIYLSLWVSVWFLLGFKANWKFNIR 416

[Close]

BLAST of SMED30012697 vs. TrEMBL
Match: A0A267H7U1 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig030458g1 PE=4 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 2.264e-25
Identity = 101/422 (23.93%), Postives = 183/422 (43.36%), Query Frame = 2

Query:  323 TKCKKLWDIWFLTYLIVINLYLTYNAILNYLNFKVNASDPVYGRNWDTNLTYLILECXXXXXXXXXXXXYTNILPVGNFANDGKSFGKDEEFFHFILNENGKADIVMNNKERNCCKQKFLKLIFMELPPISYVLQVVAAYCYLIPKPFMDARQIFHKVLRPNQIWHTDLDIIFDPDHQHPEFTYYQQWSYIQPMTVAYFNFGFSLFLLSIQYSRVFWNVSKTFTLVLSFLMLTFSLHLLVEYCSLSMMIKIIENPLIVSSSLRLELSVFTVLFLSILANLVLLFSFTTVFHYGILQYGDIMLHRHRRYRRQILNSSPHIVGSNQLDMSGPFSPCASENNYSESSIEPIFSKSHYSHILAVCFLVVVIVIKSPVIHSSFKHIYYFTSDSLTLVHMLISCLYVVSWLIVWFAFALRRTWNFKIK 1588
             K  K+W IW+   ++ +N +L Y+A   Y +F+  A        WD +     L  +II + LLP  +Y  +    N+A DG   G+D +     + E               C  + L+  FM   P + +L V+ A+C LIP P ++A +I H     ++IW T+LD I+ P           + S    +    FN   +L +L ++Y   FW  ++ F  + S ++    LH+++ Y + S++ K   +  +V+   ++ L    ++ L  + +L+LL +    F +G  Q    ML   R+YR  +   +   V    +      +PC    NY+              H+  +  +VV ++ K+PV+   +  +Y        L  ++   +Y+  W+ VWF    +  W F I+
Sbjct:    6 AKFDKMWRIWYAILVLALNAFLLYSAFQRYASFRAKA----LREQWDMSPMNFYLAMMIITVFLLPFFLYAALAKTANYAEDGVQIGRDRDCLRVAIAETSSG--AGAQATVGTCMSR-LRRHFM---PYTCLLHVLTAFCLLIPMPVLEAAEIHHAKRPSDEIWRTNLDFIYHP-----------KASATNSVCPEVFNLMLALAILLVRYPSTFWFSNRAFAFMFSVILCVCGLHIVLSYEATSVLFKASMSNGVVT---QVNLLPPAIIALHSIGDLLLLVANIAFFEFGYAQ----MLSNLRKYRNYLQLEASSSVSDRSISSCNDETPCWL--NYAP-------------HLAGILLMVVAVLCKAPVLW-DWVGLYRVHQQPAMLAAVVSGGIYLSLWVSVWFLLGFKANWKFNIR 383

[Close]

BLAST of SMED30012697 vs. TrEMBL
Match: A0A267GLJ3 (Uncharacterized protein (Fragment) OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig030458g2 PE=4 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 2.453e-25
Identity = 102/429 (23.78%), Postives = 186/429 (43.36%), Query Frame = 2

Query:  314 QKMTKCK----KLWDIWFLTYLIVINLYLTYNAILNYLNFKVNASDPVYGRNWDTNLTYLILECXXXXXXXXXXXXYTNILPVGNFANDGKSFGKDEEFFHFILNENGKADIVMNNKERNCCKQKFLKLIFMELPPISYVLQVVAAYCYLIPKPFMDARQIFHKVLRPNQIWHTDLDIIFDPDHQHPEFTYYQQWSYIQPMTVAYFNFGFSLFLLSIQYSRVFWNVSKTFTLVLSFLMLTFSLHLLVEYCSLSMMIKIIENPLIVSSSLRLELSVFTVLFLSILANLVLLFSFTTVFHYGILQYGDIMLHRHRRYRRQILNSSPHIVGSNQLDMSGPFSPCASENNYSESSIEPIFSKSHYSHILAVCFLVVVIVIKSPVIHSSFKHIYYFTSDSLTLVHMLISCLYVVSWLIVWFAFALRRTWNFKIK 1588
            Q M K +    K+W IW+   ++ +N +L Y+A   Y +F+  A        WD +     L  +I+ + LLP  +Y  +    N+A DG   G+D +     + E               C  + L+  FM   P + +L V+ A+C LIP P ++A +I H     ++IW T+LD I+ P           + S    +    FN   +L +L ++Y   FW  ++ F  + S ++    LH+++ Y + S++ K   +  +V+   ++ L    ++ L  + +L+LL +    F +G  Q    ML   R+YR  +   +   V    +      +PC    NY+              H+  +  +VV ++ K+PV+   +  +Y        L  ++   +Y+  W+ VWF    +  W F I+
Sbjct:   32 QAMAKTRAKFDKMWRIWYAILVLALNAFLLYSAFQRYASFRAKA----LREQWDMSPMNFYLAMMILTVFLLPFFLYAALAKTANYAEDGVQIGRDRDCLRVAIAETSSG--AGAQATVGTCMSR-LRRHFM---PYTCLLHVLTAFCLLIPMPVLEAAEIHHAKRPSDEIWRTNLDFIYHP-----------KASATNSVCPEVFNLMLALAILLVRYPSTFWFSNRAFAFMFSVILCVCGLHIVLSYEATSVLFKASMSNDVVT---QVNLLPPAIIALHSIGDLLLLVANIAFFEFGYAQ----MLSNLRKYRNYLQLEASSSVSDRSISSCNDETPCWL--NYAP-------------HLAGILLMVVAVLCKAPVLW-DWVGLYRVHQQPAMLAAVVSGGIYLSLWVSVWFLLGFKANWKFNIR 416

[Close]

BLAST of SMED30012697 vs. TrEMBL
Match: A0A1I8HYR5 (Uncharacterized protein OS=Macrostomum lignano OX=282301 PE=4 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.868e-25
Identity = 99/429 (23.08%), Postives = 184/429 (42.89%), Query Frame = 2

Query:  314 QKMTKCK----KLWDIWFLTYLIVINLYLTYNAILNYLNFKVNASDPVYGRNWDTNLTYLILECXXXXXXXXXXXXYTNILPVGNFANDGKSFGKDEEFFHFILNENGKADIVMNNKERNCCKQKFLKLIFMELPPISYVLQVVAAYCYLIPKPFMDARQIFHKVLRPNQIWHTDLDIIFDPDHQHPEFTYYQQWSYIQPMTVAYFNFGFSLFLLSIQYSRVFWNVSKTFTLVLSFLMLTFSLHLLVEYCSLSMMIKIIENPLIVSSSLRLELSVFTVLFLSILANLVLLFSFTTVFHYGILQYGDIMLHRHRRYRRQILNSSPHIVGSNQLDMSGPFSPCASENNYSESSIEPIFSKSHYSHILAVCFLVVVIVIKSPVIHSSFKHIYYFTSDSLTLVHMLISCLYVVSWLIVWFAFALRRTWNFKIK 1588
            Q M K +    K+W IW+   ++ +N +L Y+A   Y +F+  A        WD +     L  +I+ + LLP  +Y  +    N+A DG   G+D +     + E       +        ++ F+        P + +L V+ A+C LIP P ++A +I H     ++IW T+LD I+ P             S    +    FN   +L +L ++Y   FW  ++ F  + S ++    LH+++ Y + S++ K   +  +V+   ++ L    ++ L  + +L+LL +    F +G  Q    ML   R+YR  +   +   V    +      +PC    NY+              H+  +  +VV ++ K+PV+   +  +Y        L  ++   +Y+  W+ VWF    +  W F I+
Sbjct:    6 QAMAKTRAKFDKMWRIWYAILVLALNAFLLYSAFQRYASFRAKA----LREQWDMSPMNFYLAMMILTVFLLPFFLYAALAKTANYAEDGVQIGRDRDCLRVAIAETSSGAAAL--------RRHFM--------PYTCLLHVLTAFCLLIPMPVLEAAEIHHAKRPSDEIWRTNLDFIYHPKA-----------SATNSVCPEVFNLMLALAILLVRYPSTFWFSNRAFAFMFSVILCVCGLHIVLSYEATSVLFKASMSNGVVT---QVNLLPPAIIALHSIGDLLLLVANIAFFEFGYAQ----MLSNLRKYRNYLQLEASSSVSDRSISSCNDETPC--WLNYAP-------------HLAGILLMVVAVLCKAPVLW-DWVGLYRVHQQPAMLAAVVSGGIYLSLWVSVWFLLGFKANWKFNIR 380

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BLAST of SMED30012697 vs. Planmine SMEST
Match: SMESG000051307.1 (SMESG000051307.1)

HSP 1 Score: 1124 bits (2906), Expect = 0.000e+0
Identity = 585/586 (99.83%), Postives = 585/586 (99.83%), Query Frame = 2

Query:  320 MTKCKKLWDIWFLTYLIVINLYLTYNAILNYLNFKVNASDPVYGRNWDTNLTYLILECXXXXXXXXXXXXYTNILPVGNFANDGKSFGKDEEFFHFILNENGKADIVMNNKERNCCKQKFLKLIFMELPPISYVLQVVAAYCYLIPKPFMDARQIFHKVLRPNQIWHTDLDIIFDPDHQHPEFTYYQQWSYIQPMTVAYFNFGFSLFLLSIQYSRVFWNVSKTFTLVLSFLMLTFSLHLLVEYCSLSMMIKIIENPLIVSSSLRLELSVFTVLFLSILANLVLLFSFTTVFHYGILQYGDIMLHRHRRYRRQILNSSPHIVGSNQLDMSGPFSPCASENNYSESSIEPIFSKSHYSHILAVCFLVVVIVIKSPVIHSSFKHIYYFTSDSLTLVHMLISCLYVVSWLIVWFAFALRRTWNFKIKSTVKSNADQXXXXXXXXXXXXXQMQLHQMQNSFLLNPKTSELNLSKQEMLTANRNAALDGCSDETDMSSKLSSSNYVYLQSMRGNNIGFDMNSHASLLRNPMYLSYTXXXXXXXXXXAIYANDDSLNIRSTHLEDQFGSEHSYNSNRSRNLGFEILPPTLPNF 2077
            MTKCKKLWDIWFLTYLIVINLYLTYNAILNYLNFKVNASDPVYGRNWDTNLTYLILECIIIPLGLLPVIIYTNILPVGNFANDGKSFGKDEEFFHFILNENGKADIVMNNKERNCCKQKFLKLIFMELPPISYVLQVVAAYCYLIPKPFMDARQIFHKVLRPNQIWHTDLDIIFDPDHQHPEFTYYQQWSYIQPMTVAYFNFGFSLFLLSIQYSRVFWNVSKTFTLVLSFLMLTFSLHLLVEYCSLSMMIKIIENPLIVSSSLRLELSVFTVLFLSILAN VLLFSFTTVFHYGILQYGDIMLHRHRRYRRQILNSSPHIVGSNQLDMSGPFSPCASENNYSESSIEPIFSKSHYSHILAVCFLVVVIVIKSPVIHSSFKHIYYFTSDSLTLVHMLISCLYVVSWLIVWFAFALRRTWNFKIKSTVKSNADQILLNGNTILNNNGQMQLHQMQNSFLLNPKTSELNLSKQEMLTANRNAALDGCSDETDMSSKLSSSNYVYLQSMRGNNIGFDMNSHASLLRNPMYLSYTMNNPNMMNPNAIYANDDSLNIRSTHLEDQFGSEHSYNSNRSRNLGFEILPPTLPNF
Sbjct:    1 MTKCKKLWDIWFLTYLIVINLYLTYNAILNYLNFKVNASDPVYGRNWDTNLTYLILECIIIPLGLLPVIIYTNILPVGNFANDGKSFGKDEEFFHFILNENGKADIVMNNKERNCCKQKFLKLIFMELPPISYVLQVVAAYCYLIPKPFMDARQIFHKVLRPNQIWHTDLDIIFDPDHQHPEFTYYQQWSYIQPMTVAYFNFGFSLFLLSIQYSRVFWNVSKTFTLVLSFLMLTFSLHLLVEYCSLSMMIKIIENPLIVSSSLRLELSVFTVLFLSILANFVLLFSFTTVFHYGILQYGDIMLHRHRRYRRQILNSSPHIVGSNQLDMSGPFSPCASENNYSESSIEPIFSKSHYSHILAVCFLVVVIVIKSPVIHSSFKHIYYFTSDSLTLVHMLISCLYVVSWLIVWFAFALRRTWNFKIKSTVKSNADQILLNGNTILNNNGQMQLHQMQNSFLLNPKTSELNLSKQEMLTANRNAALDGCSDETDMSSKLSSSNYVYLQSMRGNNIGFDMNSHASLLRNPMYLSYTMNNPNMMNPNAIYANDDSLNIRSTHLEDQFGSEHSYNSNRSRNLGFEILPPTLPNF 586

[Close]

BLAST of SMED30012697 vs. Planmine SMEST
Match: SMESG000068495.1 (SMESG000068495.1)

HSP 1 Score: 240.35 bits (612), Expect = 3.842e-68
Identity = 183/600 (30.50%), Postives = 309/600 (51.50%), Query Frame = 2

Query:  335 KLWDIWFLTYLIVINLYLTYNAILNYLNFKVNASDPVYGRNWDTNLTYLILECXXXXXXXXXXXXYTNILPVGNFANDGKSFGKDEEFFHFILNENGKA-----DIVMNNKERN---CCKQKFLKLIFMELPPISYVLQVVAAYCYLIPKPFMDARQIFHKVLRPNQIWHTDLDIIFDPDHQHPEFTYYQQWSYIQPMTVAYFNFGFSLFLLSIQYSRVFWNVSKTFTLVLSFLMLTFSLHLLVEYCSLSMMIKIIENPLIVSSSLRLELSVFTVLFLSILANLVLLFSFTTVFHYGILQYGDIMLHRHRRYRRQILNSSPHIVGSNQLDMSGPFSPCASENNYSESSI-EPIFSKSHY-SHILAVCFLVVVIVIKSPVIHSSFKHIYYFTSDSLTLVHMLISCLYVVSWLIVWFAFALRRTWNFKI------KSTVKSNADQXXXXXXXXXXXXXQMQLHQMQNSFLLNPK-------TSELNLSKQEMLTANRNAALDGCSDETDMSSKLSSSNYVYLQ-----SMRGNNIGFDMNSHASLLRNPMYLSYTXXXXXXXXXXAIYANDDSLNIRSTHLEDQFGSEHSYNSNRSRNLGFE 2050
            +LW IW   +L ++++YL Y +I++YL  K  +SDP+YG NW        L C++  + LLP+I+ ++++   N ANDG   GKD +  HFI + + +      D+  +  ++N   C  Q  +K  F+   PIS VLQ+++ +CYL+P PF++A++I H++ +PN +WHTDLD + DPD  H +FT   QW++  PM  AYFN  F L  L+ +Y  VFW  ++ F+L+   +++  SLH+LV+Y S S++IK+  +P  +S +L   LS   +  +SI+ +++LL    T+F+YG+ QY   ++ RHR+  R       +   S+Q   S   S   + N+ + S + E  F  + Y SH  A+ F +  + IK P+   +  +I   T D +  ++++I+ ++   WLI WF  +L   W FK+         +  N    +    +         +    N+F+ +          S L L  +    ++   + D C +ETD+S   S  NYV L      +   N I   + +  S+LR     + +          + + N DS  I   +++D  GSE S+NSN SR+L  +
Sbjct:   10 ELWRIWIFIFLAILHIYLIYTSIVDYLRLKALSSDPIYGGNWKPGPMNFQLSCLLCSITLLPIILLSSMIVTDNLANDGHVLGKDIDNNHFIFDSDERGQLIRIDMKKSQSDKNLFSCGVQASIKQQFL---PISIVLQIISGFCYLLPLPFIEAQKIQHQINKPNHLWHTDLDFLMDPDIDHEDFTNQNQWNFQLPMRPAYFNMIFCLSQLTFRYPSVFWRTNRKFSLLFYLILILLSLHILVDYSSTSILIKLALSPDFISPALLPLLSPIIICVISIVGSMILLLMQITLFNYGLNQYFSNLI-RHRQTLRLQFKIEHNKKISDQTGSSNVSSETLNANDTNSSDLSECDFQFNKYLSHFFAIIFGLAGMSIKIPLFLQN-SNICSLTGDRVMYLNIIITTIFSTCWLITWFGLSLHNKWQFKVIFPIYDNQRMHPNHVASVGGVTSTTLPMAPNIISTNNNAFIEHSSPLYATCHPSGLTLVHRNFTPSHMKQSFDSC-EETDLS---SCHNYVLLHNANNNNSFANTINPAVANFESMLRQSFIKTKS--------TASPFLNADSTQI--INIDDTVGSEKSFNSNFSRSLTVQ 590

[Close]

BLAST of SMED30012697 vs. Planmine SMEST
Match: SMESG000008310.1 (SMESG000008310.1)

HSP 1 Score: 224.557 bits (571), Expect = 2.043e-62
Identity = 163/514 (31.71%), Postives = 263/514 (51.17%), Query Frame = 2

Query:  329 CKKLWDIWFLTYLIVINLYLTYNAILNYLNFKVNASDPVYGRNWDTNLTYLILECXXXXXXXXXXXXYTNILPVGNFANDGKSFGKDEEFFHFILNENG---KADIVMNNKERNCCKQKFLKLIFMELPPISYVLQVVAAYCYLIPKPFMDARQIFHKVLRPNQIWHTDLDIIFDPDHQHPEFTYYQQWSYIQPMTVAYFNFGFSLFLLSIQYSRVFWNVSKTFTLVLSFLMLTFSLHLLVEYCSLSMMIKIIENPLIVSSSLRLE-LSVFTVLFLSILANLVLLFSFTTVFHYGILQYGDIMLHRHRRYRRQIL-NSSPHIVGSNQLDMSGPFSPCASENNYSESSIEPIFSKSHYSHILAVCFLVVVIVIKSPVIHSSFKHIYYFTSDSLTLVHMLISCLYVVSWLIVWFAFALRRTWNFKIKSTVKSNAD-QXXXXXXXXXXXXXQMQLHQMQNSFLLNPKTSELNLS-------KQEMLTANRNAALDGCSDETDMSSKLSSSNYVYLQS 1831
            C +LW IW   +L+V+ +YL Y+ I  Y+ FK  + D  +G N+      + L CII  L   P  +Y  +   GN+A+D    GKD + F  I  EN    + D + N ++      K LK  F+   P S+++  V+A C+L+P PF++A QI  KVL+PN+IWH+DLD ++D D  H +F    +W     M   YFN  F L  L ++Y  VFW   K F+   S L+   SLH++++Y +  ++I++  NP  V+  LR+  LS  +++ LSIL + VLL +F  VF +G  Q+ D +     RYR  +L        GSN  D++     C    +        ++ + +  H  A+    +  ++K+P+ ++S   IY+ TSD L L+++L++ L++ +W I WF F L+  W F   S  K+ +D       N++     Q  LH  +    L  +  + N         K  ++   R    D  S+E D+S+  +++NYVYLQS
Sbjct:    7 CLRLWRIWNFIFLVVLYIYLVYDCIFRYIKFKKYSLDLGFGSNYSAVHMNIYLICIISGLTCFPFSLYCILFFNGNYADDNIKVGKDTDNFK-IHQENDVTWQPDELTNLEKSKNILWKRLKRHFL---PYSFIMHFVSAICFLVPIPFLEAHQIHQKVLKPNEIWHSDLDFLWDIDSWHSDFDNNGRWRTTWLMKPQYFNLIFCLLCLVLKYPNVFWACHKGFSFTFSLLLTLISLHVIIDYSTTCVLIRVASNPEFVAEKLRITFLSPISLMLLSILGSSVLLLTFWCVFEFGFHQFLDNL----SRYRHLMLIQCDGSHDGSNMSDIT-----CCKRKD--------LYLRGYLPHFGAIFGCAIGFIMKTPLFYASISVIYHHTSDPLMLLNLLLAVLFICAWFIAWFGFTLKPNWRFIFPSCSKAISDVSSTTIANSMTAGVPQPSLHSRE----LGGRADQPNQVYSCYHGMKSRLVMDERLRNPDCYSEENDLSNNAANNNYVYLQS 495

[Close]

BLAST of SMED30012697 vs. Planmine SMEST
Match: SMESG000008310.1 (SMESG000008310.1)

HSP 1 Score: 194.512 bits (493), Expect = 3.330e-52
Identity = 139/440 (31.59%), Postives = 226/440 (51.36%), Query Frame = 2

Query:  551 GNFANDGKSFGKDEEFFHFILNENG---KADIVMNNKERNCCKQKFLKLIFMELPPISYVLQVVAAYCYLIPKPFMDARQIFHKVLRPNQIWHTDLDIIFDPDHQHPEFTYYQQWSYIQPMTVAYFNFGFSLFLLSIQYSRVFWNVSKTFTLVLSFLMLTFSLHLLVEYCSLSMMIKIIENPLIVSSSLRLE-LSVFTVLFLSILANLVLLFSFTTVFHYGILQYGDIMLHRHRRYRRQIL-NSSPHIVGSNQLDMSGPFSPCASENNYSESSIEPIFSKSHYSHILAVCFLVVVIVIKSPVIHSSFKHIYYFTSDSLTLVHMLISCLYVVSWLIVWFAFALRRTWNFKIKSTVKSNAD-QXXXXXXXXXXXXXQMQLHQMQNSFLLNPKTSELNLS-------KQEMLTANRNAALDGCSDETDMSSKLSSSNYVYLQS 1831
            GN+A+D    GKD + F  I  EN    + D + N ++      K LK  F+   P S+++  V+A C+L+P PF++A QI  KVL+PN+IWH+DLD ++D D  H +F    +W     M   YFN  F L  L ++Y  VFW   K F+   S L+   SLH++++Y +  ++I++  NP  V+  LR+  LS  +++ LSIL + VLL +F  VF +G  Q+ D +     RYR  +L        GSN  D++     C    +        ++ + +  H  A+    +  ++K+P+ ++S   IY+ TSD L L+++L++ L++ +W I WF F L+  W F   S  K+ +D       N++     Q  LH  +    L  +  + N         K  ++   R    D  S+E D+S+  +++NYVYLQS
Sbjct:   27 GNYADDNIKVGKDTDNFK-IHQENDVTWQPDELTNLEKSKNILWKRLKRHFL---PYSFIMHFVSAICFLVPIPFLEAHQIHQKVLKPNEIWHSDLDFLWDIDSWHSDFDNNGRWRTTWLMKPQYFNLIFCLLCLVLKYPNVFWACHKGFSFTFSLLLTLISLHVIIDYSTTCVLIRVASNPEFVAEKLRITFLSPISLMLLSILGSSVLLLTFWCVFEFGFHQFLDNL----SRYRHLMLIQCDGSHDGSNMSDIT-----CCKRKD--------LYLRGYLPHFGAIFGCAIGFIMKTPLFYASISVIYHHTSDPLMLLNLLLAVLFICAWFIAWFGFTLKPNWRFIFPSCSKAISDVSSTTIANSMTAGVPQPSLHSRE----LGGRADQPNQVYSCYHGMKSRLVMDERLRNPDCYSEENDLSNNAANNNYVYLQS 441

[Close]

BLAST of SMED30012697 vs. Planmine SMEST
Match: SMESG000077784.1 (SMESG000077784.1)

HSP 1 Score: 114.775 bits (286), Expect = 3.639e-26
Identity = 108/430 (25.12%), Postives = 193/430 (44.88%), Query Frame = 2

Query:  329 CKKLWDIWFLTYLIVINLYLTYNAILNYLNFKVNASDPVYGRNWDTNLTYLILECXXXXXXXXXXXXYTNILPVGNFANDGKSFGKDEEFFHFILNENGKADIVMNNKERNCCKQKFLKLIFMELPPISYVLQVVAAYCYLIPKPFMDARQIFHKVLRPNQIWHTDLDIIFDPD-----HQHPEFTYYQQWSY-IQPMTVA--YFNFGFSLFLLSIQYSRVFWNVSKTFTLVLSFLMLTFSLHLLVEYCSLSMMIKIIENPLIVSSSLRLELSVFTVLFLSILANLVLLFSFTTVFHYGILQYGDIMLHRHRRYRRQILNSSPHIVGSNQLDMSGPFSPCASENNYSESSIEPIFSKSHYSHILAVCFLVVVIVIKSPVIHSSFKHIYY---FTSDSLTLVHMLISCLYVVSWLIVWFAFALRRTWNFKI 1585
            C +LW +W+   +IV+ + L   AI NYL +K  + DP +G +W        L  I++ L LL  +IY+ +  VG+ ANDG   G D +     L E      +          + FL  +   + P +  + +  A    +P   M A QI ++ + P+ IW T++D +  P        +    Y     Y  +P  +A  + N   SL ++ I+    FW  +K F+++ S         +L+EY SL ++IKII N   + + +   LSV+ +L + ++ +L+++F    +F YG  Q+    +   R+YR+   +     V    L+          +N Y   ++ P         I  +  LV+V ++K P+++    ++      +   L L+ + IS  Y +S L +WF   ++  W F I
Sbjct:   11 CDRLWKLWYSILIIVMQVLLISLAISNYLTYKSQSFDPRFGNHWSALPLNFQLASIVLSLSLLVWLIYSCMFKVGHIANDGIVLGLDLDSIKKALEEISSYKGI----------KLFLTRLITHVLPYNCFIHLSIALLLCLPVALMQAEQIKNEAISPDYIWTTNIDFLISPHSFRIFKANTVICYKLPCEYPTKPSAIAPEFINLIISLLIIVIRLPSPFWYTNKAFSILFSIFAFITVSCILMEYESLILIIKIIHN-YDLDTKIESHLSVWLILIIFLIKSLLMIFMLIIIFEYGYTQF----ISNMRKYRQYFSSDISDSVSQQSLN----------DNQYKWYNVSP--------RIFGILILVIVKILKIPILYVQISYLKINGKISIHPLILISICISLFYFLSCLFLWFGLCVKNKWQFHI 407

The following BLAST results are available for this feature:

BLAST of SMED30012697 vs. Ensembl Human
BLAST of SMED30012697 vs. Ensembl Celegans
BLAST of SMED30012697 vs. Ensembl Fly
BLAST of SMED30012697 vs. Ensembl Zebrafish
BLAST of SMED30012697 vs. Ensembl Xenopus
BLAST of SMED30012697 vs. Ensembl Mouse
BLAST of SMED30012697 vs. UniProt/SwissProt
BLAST of SMED30012697 vs. TrEMBL
BLAST of SMED30012697 vs. Ensembl Cavefish
BLAST of SMED30012697 vs. Ensembl Sea Lamprey
BLAST of SMED30012697 vs. Ensembl Yeast
BLAST of SMED30012697 vs. Ensembl Nematostella
BLAST of SMED30012697 vs. Ensembl Medaka
BLAST of SMED30012697 vs. Planmine SMEST

BLAST of SMED30012697 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SMED30012697 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 1


Match Name	E-value	Identity	Description
K09F5.6	2.552e-14	20.97	pep chromosome:WBcel235:X:7719272:7725583:1 gene:W...	[more]

BLAST of SMED30012697 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SMED30012697 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SMED30012697 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SMED30012697 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SMED30012697 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SMED30012697 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A1S3HJ55	3.457e-26	24.26	uncharacterized protein LOC106155296 OS=Lingula un...	[more]
A0A267E669	1.535e-25	23.72	Uncharacterized protein (Fragment) OS=Macrostomum ...	[more]
A0A267H7U1	2.264e-25	23.93	Uncharacterized protein OS=Macrostomum lignano OX=...	[more]
A0A267GLJ3	2.453e-25	23.78	Uncharacterized protein (Fragment) OS=Macrostomum ...	[more]
A0A1I8HYR5	8.868e-25	23.08	Uncharacterized protein OS=Macrostomum lignano OX=...	[more]

BLAST of SMED30012697 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SMED30012697 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SMED30012697 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SMED30012697 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SMED30012697 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SMED30012697 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5


Match Name	E-value	Identity	Description
SMESG000051307.1	0.000e+0	99.83	SMESG000051307.1	[more]
SMESG000068495.1	3.842e-68	30.50	SMESG000068495.1	[more]
SMESG000008310.1	2.043e-62	31.71	SMESG000008310.1	[more]
SMESG000008310.1	3.330e-52	31.59	SMESG000008310.1	[more]
SMESG000077784.1	3.639e-26	25.12	SMESG000077784.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediteranean smed_20140614 Interproscan	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Sequences

The following sequences are available for this feature:

transcript sequence
protein sequence

transcript sequence

>SMED30012697 ID=SMED30012697|Name=SMED30012697|organism=Schmidtea mediterranea sexual|type=transcript|length=2283bp
TAAGTTACACACCAACAGAAAATTGTCAAGTCAATTGAAGTGTGTGCAAA
CATGCAAACACTTGCAATGACAATTTGTTCAATGACTAATACTCCATTGG
TTCGTATACATGCACACATTATGTAAGTTATCCATTTCTCTCCTATTGCT
TATGTGTTACTTATTTAAGAACAGTAGTGTAAATTGTTATGATTCCATGA
TTTGCGCTTTTATAATTTGTCTTTAATAATTACATATTTCTGGATTATGT
AAAATTCTACCACTCCAAAGAACATTTCATTATTGCGGATTAATTTCACT
TCGTTTCACTAATCAGAAAATGACCAAGTGTAAAAAGTTATGGGATATTT
GGTTTCTCACATATTTGATTGTCATTAATCTTTATTTGACTTACAATGCC
ATTCTCAATTATCTCAATTTCAAAGTCAATGCATCGGATCCAGTGTATGG
AAGAAATTGGGACACGAATCTGACATATTTGATATTGGAATGTATCATAA
TTCCGTTGGGTCTTTTGCCAGTGATCATTTACACTAACATTCTACCAGTT
GGGAATTTCGCTAATGATGGAAAATCATTTGGAAAGGATGAAGAGTTTTT
CCATTTTATTCTCAACGAAAACGGCAAAGCAGATATCGTGATGAATAATA
AAGAAAGAAACTGTTGTAAACAAAAGTTTTTGAAATTAATTTTCATGGAA
TTACCACCGATTTCTTATGTGTTGCAAGTTGTCGCTGCGTATTGTTATCT
CATTCCGAAACCGTTTATGGACGCGAGACAAATATTCCATAAAGTTCTTC
GGCCAAATCAAATTTGGCATACAGATCTTGATATCATATTCGATCCTGAT
CATCAGCATCCTGAATTCACATATTATCAACAATGGAGCTACATTCAACC
CATGACAGTCGCATATTTCAATTTTGGTTTCAGTCTTTTTCTTTTATCAA
TTCAATATTCTCGCGTGTTTTGGAATGTTAGCAAAACCTTTACATTGGTT
CTTTCTTTTTTAATGCTTACATTTTCTTTACATTTACTAGTAGAATATTG
TTCATTGTCAATGATGATTAAGATTATCGAAAACCCTCTCATAGTATCTT
CTTCTTTGAGATTAGAATTAAGTGTTTTCACTGTTCTTTTTTTATCGATT
CTAGCCAATTTGGTTCTTTTGTTTTCTTTTACGACAGTTTTCCATTACGG
AATTCTTCAGTATGGTGATATTATGTTGCACAGACATAGGCGGTATCGGC
GGCAAATTCTCAACTCTTCTCCTCACATTGTCGGTTCGAATCAACTTGAC
ATGTCAGGACCTTTTAGTCCATGTGCCAGTGAGAACAATTATTCAGAATC
GAGTATCGAGCCGATATTTTCCAAGAGTCATTATTCTCATATCTTAGCTG
TGTGTTTTCTTGTTGTCGTTATTGTTATAAAGTCTCCTGTTATACATTCT
TCTTTCAAACACATCTACTATTTCACATCAGATTCATTAACTCTTGTACA
TATGCTCATTAGTTGCCTTTATGTGGTGTCATGGTTGATTGTTTGGTTTG
CATTTGCATTGCGACGTACTTGGAATTTCAAGATAAAGTCCACCGTGAAA
TCAAATGCAGATCAAATTTTATTGAATGGGAATACTATTCTGAATAATAA
CGGTCAAATGCAACTGCATCAGATGCAGAACTCTTTCTTGCTCAATCCGA
AAACTTCCGAATTGAATCTCTCGAAACAAGAAATGTTGACTGCTAACAGA
AATGCTGCCTTGGACGGTTGCAGTGATGAAACCGACATGTCTAGTAAATT
GAGCTCCAGTAATTATGTATATTTACAATCAATGAGAGGCAACAATATCG
GGTTTGACATGAACAGCCATGCGTCTCTTTTGCGTAACCCAATGTACTTA
TCATACACCATGAACAACCCAAACATGATGAATCCGAATGCCATATATGC
CAACGATGATTCTCTCAATATTCGATCAACTCATTTGGAAGATCAGTTTG
GCAGTGAGCACTCATACAATTCGAATAGATCAAGAAATTTAGGGTTTGAA
ATTCTTCCTCCTACTCTTCCAAATTTCGGCCGCATTTGGAATGGACCGCC
GCAGTGAATAATCCCTGGGATAAGCTGCTGACATTTCATAAGACTGTTAA
TGCACAAATCCAAGCTAATTGTTTGAATTCTCCAACAAAAACCCATTAAA
AGAAAATAAAAAAATATATATTTCTAATTGCCAAGAAAGAATTTCTTCGA
ATTTTTTCTGTCTATCAGTTCGTGAAAATTTGC

protein sequence of SMED30012697-orf-1

>SMED30012697-orf-1 ID=SMED30012697-orf-1|Name=SMED30012697-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=596bp
MTKCKKLWDIWFLTYLIVINLYLTYNAILNYLNFKVNASDPVYGRNWDTN
LTYLILECIIIPLGLLPVIIYTNILPVGNFANDGKSFGKDEEFFHFILNE
NGKADIVMNNKERNCCKQKFLKLIFMELPPISYVLQVVAAYCYLIPKPFM
DARQIFHKVLRPNQIWHTDLDIIFDPDHQHPEFTYYQQWSYIQPMTVAYF
NFGFSLFLLSIQYSRVFWNVSKTFTLVLSFLMLTFSLHLLVEYCSLSMMI
KIIENPLIVSSSLRLELSVFTVLFLSILANLVLLFSFTTVFHYGILQYGD
IMLHRHRRYRRQILNSSPHIVGSNQLDMSGPFSPCASENNYSESSIEPIF
SKSHYSHILAVCFLVVVIVIKSPVIHSSFKHIYYFTSDSLTLVHMLISCL
YVVSWLIVWFAFALRRTWNFKIKSTVKSNADQILLNGNTILNNNGQMQLH
QMQNSFLLNPKTSELNLSKQEMLTANRNAALDGCSDETDMSSKLSSSNYV
YLQSMRGNNIGFDMNSHASLLRNPMYLSYTMNNPNMMNPNAIYANDDSLN
IRSTHLEDQFGSEHSYNSNRSRNLGFEILPPTLPNFGRIWNGPPQ*

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **cellular component**
Term	Definition
GO:0016020	membrane
GO:0016021	integral component of membrane

InterPro

Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR21579:SF13	PROTEIN TINCAR	coord: 5..482
None	No IPR available	PANTHER	PTHR21579	FAMILY NOT NAMED	coord: 5..482
None	No IPR available	TMHMM	TMhelix		coord: 53..75
None	No IPR available	TMHMM	TMhelix		coord: 7..29
None	No IPR available	TMHMM	TMhelix		coord: 355..377
None	No IPR available	TMHMM	TMhelix		coord: 392..414
None	No IPR available	TMHMM	TMhelix		coord: 189..211
None	No IPR available	TMHMM	TMhelix		coord: 224..241
None	No IPR available	TMHMM	TMhelix		coord: 123..145
None	No IPR available	TMHMM	TMhelix		coord: 274..296

Main menu

SMED30012697

Zeng et. al., 2018

▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Davies et. al., 2017

PAGE et. al., 2020

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 1

Owlery

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