SWIM-type domain-containing protein

Overview
NameSWIM-type domain-containing protein
Smed IDSMED30012666
Length (bp)2291
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SWIM-type domain-containing protein (SMED30012666) t-SNE clustered cells

Violin plots show distribution of expression levels for SWIM-type domain-containing protein (SMED30012666) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SWIM-type domain-containing protein (SMED30012666) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SWIM-type domain-containing protein (SMED30012666) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020




SMED30012666

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 22

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
Smed sexual biotypeSMED30012666SMESG000040512.1 SMESG000003282.1 SMESG000001561.1 Contig52495newmark_estsPMID:29674431
Fincher et al., 2018
FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30012666SMESG000040512.1 SMESG000003282.1 SMESG000001561.1 Contig52495uc_Smed_v2PMID:29674431
Fincher et al., 2018
FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30012666SMESG000066558.1 Contig36073newmark_estsPMID:29674431
Fincher et al., 2018
FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30012666SMESG000066558.1 Contig36073uc_Smed_v2PMID:29674431
Fincher et al., 2018
FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30012666SMESG000053393.1 SMESG000040512.1 SMESG000003282.1 Contig49295newmark_estsPMID:29674431
Fincher et al., 2018
FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30012666SMESG000053393.1 SMESG000040512.1 SMESG000003282.1 Contig49295uc_Smed_v2PMID:29674431
Fincher et al., 2018
FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30012666SMESG000010838.1 Contig50394newmark_estsPMID:29674431
Fincher et al., 2018
FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30012666SMESG000010838.1 Contig50394uc_Smed_v2PMID:29674431
Fincher et al., 2018
FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30012666SMESG000056461.1 SMESG000056439.1 SMESG000056424.1 SMESG000056423.1 SMESG000056422.1 Contig14510newmark_estsPMID:29674431
Fincher et al., 2018
FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30012666SMESG000056461.1 SMESG000056439.1 SMESG000056424.1 SMESG000056423.1 SMESG000056422.1 Contig14510uc_Smed_v2PMID:29674431
Fincher et al., 2018
FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30012666SMESG000074086.1 SMESG000040512.1 Contig15252newmark_estsPMID:29674431
Fincher et al., 2018
FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30012666SMESG000074086.1 SMESG000040512.1 Contig15252uc_Smed_v2PMID:29674431
Fincher et al., 2018
FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30012666SMESG000066407.1 SMESG000053709.1 SMESG000053708.1 SMESG000046471.1 SMESG000044282.1 Contig18438uc_Smed_v2PMID:29674431
Fincher et al., 2018
FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30012666SMESG000066407.1 SMESG000053709.1 SMESG000053708.1 SMESG000046471.1 SMESG000044282.1 Contig18438newmark_estsPMID:29674431
Fincher et al., 2018
FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30012666SMESG000029197.1 Contig14316newmark_estsPMID:29674431
Fincher et al., 2018
FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30012666SMESG000029197.1 Contig14316uc_Smed_v2PMID:29674431
Fincher et al., 2018
FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30012666SMESG000058043.1 SMESG000040512.1 SMESG000003282.1 Contig31025newmark_estsPMID:29674431
Fincher et al., 2018
FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30012666SMESG000058043.1 SMESG000040512.1 SMESG000003282.1 Contig31025uc_Smed_v2PMID:29674431
Fincher et al., 2018
FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
neuronSMED30012666SMESG000003282.1 Contig18900newmark_estsPMID:27612384
Roberts-Galbraith et al., 2016
whole organism asexual adult colorimetric in situ hybridization evidence
neuronSMED30012666SMESG000003282.1 Contig18900uc_Smed_v2PMID:27612384
Roberts-Galbraith et al., 2016
whole organism asexual adult colorimetric in situ hybridization evidence
reproductive organSMED30012666SMESG000065269.1 SMESG000065254.1 SMESG000065253.1 SMESG000065247.1 SMESG000065245.1 SMESG000065100.1 SMESG000065096.1 SMESG000065095.1 SMESG000065094.1 SMESG000065093.1 SMESG000065086.1 SMESG000050058.1 Contig19948newmark_estsPMID:28434803
Rouhana et al., 2017
whole organism adult hermaphrodite RNA-sequencing evidence
reproductive organSMED30012666SMESG000065269.1 SMESG000065254.1 SMESG000065253.1 SMESG000065247.1 SMESG000065245.1 SMESG000065100.1 SMESG000065096.1 SMESG000065095.1 SMESG000065094.1 SMESG000065093.1 SMESG000065086.1 SMESG000050058.1 Contig19948uc_Smed_v2PMID:28434803
Rouhana et al., 2017
whole organism adult hermaphrodite RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
BLAST of SWIM-type domain-containing protein vs. TrEMBL
Match: A0A4Y2WAS5 (SWIM-type domain-containing protein OS=Araneus ventricosus OX=182803 GN=AVEN_1295_1 PE=4 SV=1)

HSP 1 Score: 320.472 bits (820), Expect = 2.088e-95
Identity = 201/609 (33.00%), Postives = 327/609 (53.69%), Query Frame = 1
Query:  130 DYQSDLEFDVEVTSLKKPRAKKVSKVWTHEKVFXXXXXXXXXXXXXXIWSYSYSNKTEEGKKVYYRCNQVKFKGKQCDSALHLLYDSRSDEVILFRAEAEHKH--EENMSKSAISNEAXXXXXXXXXXXXXXXRMLEIFHERGIKPVPTTIQLRNQLNKIRNEVYGPPVISLGELENWLQSSSSIPELEDEAFVVNYKITYAXXXXXXXXXXXXXXXXXXHGSK--FRFFISTIRLLKLASASTILNADATYKLVWQGYPILIIGTTDLDRHFHSFGLGICTNEKTADFNFIFSSINIGLKKINASLFNPRVLISDASNAIRKAYSQVFN-KNEIVMCWAHMRRNFVKKIESLVAKEDQNELIEDVDQLQLSQSQVIFEKASSLFVKKWRQK---KATEFLDYMNMMWLTTHNTWYEGYMPFTPSTNNNLESNNRVLKDEETIRERTPLSRFSKQALD-IVKKWS---LAYPRSLKEFITKQSIDTALWTQSYQWAKESKAILSVPQEQSTNYYVSASDA--TITQEDIDKVEK--MRWTTFDQF-TKRAFTVWRINLPNDKANWADGQCNCPAFFKKFICKHVVGISIRLKYCKVPAVAKNTSIGSKL 1905
            +Y S+ + ++  T+++K + +K  ++W   K F++AE A N +   K W    +  +  G KV YRC   +++  +C + ++LL+ S S  V L+ A+ EH +  + N   S ++ E    + E    K     ++  F   G+K  P  ++L+N L K+R E +GPP IS+ ++ NW  +   +P  ED  FV+   +                  E + G K   +  IST RLL+L   +  +  DATYKL+WQGYP+LI+G++D++R FH F + +C NE  +DF FIF  +     KIN + +NP++L++DAS+AI   +  VF      +MC+ H  +N   K+  +   +D++E+  D++ L L      F   S LF+KKW++K     T F +Y   +WLT++  WY G   + P TNN LE+ N V+K E T RER P+ +F +   + IVKKWS        + K F  K    T +WT++YQWAK    IL       + +Y+ +S     I+ E +   E   ++WT+FD++ T+ +  +W++ +    ++ +   C+CP F KK+ICKH +G+ IR+   KVP  AK   +G KL
Sbjct:   10 NYHSESDDEINETNVRKRKEQK-KRIWIKSKEFETAELAINYVDNFKTWKKITTYNSSAGCKVTYRCTAGEYRKNECPAGIYLLFHSESSVVSLYEAKNEHSNHVDGNRGLSMVTREMVRQLFEDGIRKPNA--IIAAFQNHGLKE-PEKLKLKNFLAKVRQEKFGPPTISVKDVFNWCNARMDVPVEEDTPFVLGVNV------------------EVDDGDKHDLKIVISTKRLLRLMIKTEGVQTDATYKLIWQGYPVLIVGSSDMNRTFHPFAIAVCNNETESDFAFIFKCVKDSCYKINETEWNPKILLADASSAITNGFKAVFGFPFRRLMCYFHAVKNIDGKLRGI---QDKDEIRNDIECLHLCPDDETFNIVSELFLKKWKEKNDVNITTFTEYFKSVWLTSNRHWYIGSRNYFPITNNGLEATNAVIKKEHTFRERLPVGQFLEVLENAIVKKWSNERDPVNPNYKPFYMKPQYSTKVWTEAYQWAKLEVKILEGKNGNQSVFYLPSSQVKQNISAEMVRSHENAYLKWTSFDEYKTEYSNCIWKVIVSASDSDGSVSTCSCPVFAKKYICKHSLGMLIRMGKEKVPNEAKGLPLGQKL 593          
BLAST of SWIM-type domain-containing protein vs. TrEMBL
Match: A0A226D5N1 (Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Folsomia candida OX=158441 GN=Fcan01_25381 PE=4 SV=1)

HSP 1 Score: 283.878 bits (725), Expect = 3.171e-82
Identity = 194/554 (35.02%), Postives = 286/554 (51.62%), Query Frame = 1
Query:  301 EEGKKVYYRCNQVKFKGKQCDSALHLLYDSRSDEVILFRAEAEHKHEENMSKSAISNEAXXXXXXXXXXXXXXXRMLEI-FHERGIKPVPTTIQLRNQLNKIRNEVYGPPVISLGELENWLQSSSSIPELEDEAFVVNYKITYAXXXXXXXXXXXXXXXXXXHGSKFRFFISTIRLLKLASASTILNADATYKLVWQGYPILIIGTTDLDRHFHSFGLGICTNEKTADFNFIFSSINIGLKKINASLFNPRVLISDASNAIRKAYSQVFN-KNEIVMCWAHMRRNFVKKIESLVAKEDQNELIE-DVDQLQLSQSQVIFEKASSLFVKKWRQKKATEFLDYMNMMWLTTHNTWYEGYMPFTPSTNNNLESNNRVLKDEETIRERTPLSRFSKQALDIVKKWSLAY-PRSL--KEFITKQSIDTALWTQSYQWAKESK-AILSVPQ--EQSTNYYVSASD-ATITQEDI----DKVEKMRWTTFDQFTKRAFTVWRINLPNDKANWADGQCNCPAFFKKFICKHVVGISIRLKYCKVPAVAKNTSIGSKLPRGRP 1920
            ++GKK+YY      FK K C   +HL     S  V L      H H+    K  I +EAKE+I  L K  I   ++++     +GI P P+  Q+ N++N + N      ++SLG++ +  + SS IP   D+AFV  Y I +                      +F  F+ST RLL + S   +L ADATYKL W+G+P+L++GT+D D HFH FG+ I + E   DF+ +F      LK  + + F P VL++D + AI  A+  VF  + + V CW H+++N  K ++S    E Q + I  D+D LQL+ ++  F  A  LF+KKW+     +F DY    +L   N WYEGY P  P TNN  E+ N  +K+E T R+R PL         IV  WSL   P SL  K F T  +    L T+S+ W+ + K A L   +    +  YY++ S    +  EDI    +K+ K  WT FD + K    +W +N   ++  W+  +CN  +F KK++CKHV+GI++  K   V   A    +G+K PRGRP
Sbjct:   67 QDGKKIYYN-----FKIKDCPGKVHLYLPGNSQIVNLLTNGKPHDHD-GEGKHGIPSEAKEIIDSLRKDGITQPKLIQTNLRRQGIDP-PSRTQISNRINYL-NSKDENRIVSLGQISDLCRRSSEIPTQMDDAFVAGYSIEFEI-------------------KRFSLFMSTKRLLSMTSQCKLLQADATYKLNWEGFPVLVVGTSDKDSHFHPFGIAITSGETVEDFSSVFQV----LKGYDEN-FEPEVLVADCAEAITNAFQTVFRVEFKRVYCWFHVKQNVKKFLKSSKIPESQKKGISFDIDCLQLADNEEEFNIAKKLFIKKWKTGDTKDFYDYFETEYLNQRNGWYEGYAPGYPCTNNGPEAINATIKNENTFRKRLPLGELFVTLKKIVSGWSLDRNPVSLDCKIFATSPTYSLQLQTKSFNWSIDKKRAPLKSKKGCPGTVVYYITPSGLPALKSEDIIQYNNKMCKKTWTKFDTYKKCKERLWIVNY--NEEEWSSSRCNYTSFKKKYMCKHVMGIAVIRKDFTVRDEAVTVPVGTKRPRGRP 586          
BLAST of SWIM-type domain-containing protein vs. TrEMBL
Match: A0A5N4A066 (Uncharacterized protein (Fragment) OS=Photinus pyralis OX=7054 GN=PPYR_14849 PE=4 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 4.120e-69
Identity = 145/394 (36.80%), Postives = 212/394 (53.81%), Query Frame = 1
Query:  796 FRFFISTIRLLKLASASTILNADATYKLVWQGYPILIIGTTDLDRHFHSFGLGICTNEKTADFNFIFSSINIGLKKINASLFNPRVLISDASNAIRKAYSQVFNK-NEIVMCWAHMRRNFVKKIESLVAKEDQNELIEDVDQLQLSQSQVIFEKASSLFVKKWRQKKAT------EFLDYMNMMWLTTHNTWYEGYMPFTPSTNNNLESNNRVLKDEETIRERTPLSRFSKQAL--DIVKKWSLAYPR-----SLKEFITKQSIDTALWTQSYQWAKESKAILSVPQEQSTNYYVSASDAT--ITQEDID--KVEKMRWTTFDQFTKRAFTVWRINLPNDKANWADGQCNCPAFFKKFICKHVVGISIRLKYCKVPAVAKNTSIGSKLPRGRPT 1923
             +  +ST RLLKL      + ADATYKLVWQGYP+LI+GT+D+ R FH   + +C  E  ADF FIF ++      I+  ++ P VL++DAS AI   +  VF      + C+ H+ +N    I  +  K    E+  D+  LQL     +F  A +LF+KKW  K  T      +F++Y    WL  +  WYEG     PSTNN LES N  +K E T+RER P+ +F  +AL   +V+KWS  Y R     + K F +   + T LWT +YQW K    +      + T YY  +++AT  + QE++   K   ++W  FD F +++ TV ++   ++       QC C  F K++IC+H +G+ + L   KVP  AK+  +G K  RGRPT
Sbjct:   15 LKIVLSTKRLLKLLGEVDKVQADATYKLVWQGYPVLIVGTSDICRKFHPLAVAVCFGEAEADFAFIFQAMKQSYMNIHQMIWKPNVLLADASVAITNGFKSVFGTPARRLQCFFHVLKNVDSVIRGITEK---TEIGRDLHALQLCIDDEVFIIAENLFLKKWESKNVTNHQAIKDFINYFKKTWLGINRFWYEGACARFPSTNNGLESINATIKKEHTLRERLPVGQFM-EALRTSLVEKWS--YERNPENPNYKPFFSTIKLTTKLWTDAYQWVKLKPKMFEEKSNEKTIYYTKSTNATEVLNQEEMQTWKNTYLKWECFDDF-RKSQTVLKLACYSENEELV-SQCTCSRFLKEYICEHSLGLLVILGKAKVPIEAKSVPLGQKRKRGRPT 400          
BLAST of SWIM-type domain-containing protein vs. TrEMBL
Match: A0A226D022 (SWIM-type domain-containing protein OS=Folsomia candida OX=158441 GN=Fcan01_26941 PE=4 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 1.000e-67
Identity = 163/563 (28.95%), Postives = 272/563 (48.31%), Query Frame = 1
Query:  274 WSYSYSNKTEEGKKVYYRCNQVKFKGKQCDSALHLLYDSRSDEVILFRAEAEHKHEENMSKSAISNEAXXXXXXXXXXXXXXXRMLEIFHERGIKPVPTTIQLRNQLNKIRNEVYGPPVISLGELENWLQSSSSIPELEDEAFVVNYKITYAXXXXXXXXXXXXXXXXXXHGSKFRFFISTIRLLKLASASTILNADATYKLVWQGYPILIIGTTDLDRHFHSFGLGICTNEKTADFNFIFSSINIGLKKINASLFNPRVLISDASNAIRKAYSQVFNKNEI-VMCWAHMRRNFVKKIESLVAKEDQNELIEDVDQLQLSQSQVIFEKASSLFVKKWRQKKATE-FLDYMNMMWLTTHNTWYEGYMPFTPSTNNNLESNNRVLKDEETIRERTPLSRFSKQALDIVKKWSLAYPRSL---KEFITKQSIDTALWTQSYQWAKESKAILSVPQEQSTN----YYVSASDA-TITQEDIDK----VEKMRWTTFDQFTKRAFTVWRINLPNDKANWADGQCNCPAFFKKFICKHVVGISIRLKYCKVPAVAKNTSIGSKLPRGRP 1920
            + +  +N+TE G K +Y+C        +C + L+LL      +VI ++    H H +    S +    ++L+ +L K  I     ++        P+P   Q+ N    +++ +  P ++SLG+LE  L +  + P  +D+  +V   I +  +                    F F +ST RL+++ +    L+AD TYKLVW+ +P+L++GT+D +R+FH   + + T E   D+  IF      L     + + P+VLI+D++ AI   +  VF  N + V CW H+      +++ +   E + EL  D+D LQL++ ++ F+ A  LF +KW    A + F+ Y    ++     WYEG  P  PSTNN LES N ++K + T+R+R PL  F      ++  WS      L   K F  +  I  A  T +Y W K++ +  S  Q++  +    ++V A    ++ ++DI       EK  W  F+ + K    +W I    D  NW   +CNCP F K+ ICKH++G++   K   +    KN  IG K   GRP
Sbjct:   59 FRFKSANQTECGMKHFYKCKV----SSKCSAKLYLLLAEDGQDVIRYQTNTAHDHLQKNKTSGVQGPTRQLMVKLLKNGISGPSQIQASIRDSGLPIPNRKQISNAKAYLKS-IEAPRIVSLGDLEKQLSALLTEPTSQDQTILVGKIIDFEKKT-------------------FHFMLSTPRLMQVLTFGDCLHADGTYKLVWENFPVLVLGTSDKNRNFHPISIAVSTGETEQDYGNIFRI----LASSCGTKYEPKVLIADSAEAITNGFESVFGSNFVRVYCWYHVSAKIKDRLKQIECPETRRELKSDIDLLQLAEDKLDFDAAVHLFRQKWSGVDAVKNFVGYFIGEYIDQRCGWYEGTAPGFPSTNNGLESINGLIKRQGTLRKRLPLGEFVNCISKLLSGWSSERDPQLPDYKRFRLEPVITIAAMTDAYNWLKDT-SRPSTRQKKINDTIIKFFVPAKGTRSLDEKDIANYIQLTEKKSWRKFETYRKTKEKLWVIEY--DIINWMQSRCNCPMFKKQHICKHLIGLAANRKDFNISDACKNVPIGIKRRPGRP 590          
BLAST of SWIM-type domain-containing protein vs. TrEMBL
Match: A0A226DBB1 (SWIM-type domain-containing protein OS=Folsomia candida OX=158441 GN=Fcan01_23227 PE=4 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 1.165e-67
Identity = 164/563 (29.13%), Postives = 272/563 (48.31%), Query Frame = 1
Query:  274 WSYSYSNKTEEGKKVYYRCNQVKFKGKQCDSALHLLYDSRSDEVILFRAEAEHKHEENMSKSAISNEAXXXXXXXXXXXXXXXRMLEIFHERGIKPVPTTIQLRNQLNKIRNEVYGPPVISLGELENWLQSSSSIPELEDEAFVVNYKITYAXXXXXXXXXXXXXXXXXXHGSKFRFFISTIRLLKLASASTILNADATYKLVWQGYPILIIGTTDLDRHFHSFGLGICTNEKTADFNFIFSSINIGLKKINASLFNPRVLISDASNAIRKAYSQVFNKNEI-VMCWAHMRRNFVKKIESLVAKEDQNELIEDVDQLQLSQSQVIFEKASSLFVKKWRQKKATE-FLDYMNMMWLTTHNTWYEGYMPFTPSTNNNLESNNRVLKDEETIRERTPLSRFSKQALDIVKKWSLAYPRSL---KEFITKQSIDTALWTQSYQWAKESKAILSVPQEQSTN----YYVSASDA-TITQEDIDK----VEKMRWTTFDQFTKRAFTVWRINLPNDKANWADGQCNCPAFFKKFICKHVVGISIRLKYCKVPAVAKNTSIGSKLPRGRP 1920
            + +  +N+TE G K +Y+C        +C + L+LL      +VI ++    H H +    S +    ++L+ EL K  I     ++        P+P   Q+ N    +++ +  P ++SLG+LE  L +  + P  +D+  +V   I +  +                    F F +ST RL+++ +    L+AD TYKLVW+ +P+L++GT+D +R+FH   + + T E   D+  IF      L     + + P+VLI+D++ AI   +  VF  N + V CW H+      +++ +   E + EL  D+D LQL++ ++ F+ A  LF +KW    A + F+ Y    ++     WYEG  P  PSTNN LES N ++K + T+R+R PL  F      ++  WS      L   K F  +  I  A  T +Y W K++ +  S  Q++  +    ++V A    ++ ++DI       EK  W  F+ + K    +W I    D  NW   +CNCP F K+ ICKH++G++   K   +    KN  IG K   GRP
Sbjct:   59 FRFKSANQTECGMKHFYKCKV----SSKCSAKLYLLLAEDGQDVIRYQTNTAHDHLQKNKTSGVQGPTRQLMVELLKNGISGPSQIQASIRDSGLPIPNRKQISNAKAYLKS-IEAPRIVSLGDLEKQLSALLTEPTSQDQTILVGNIIDFEKKT-------------------FHFMLSTPRLMQVLTFGDCLHADGTYKLVWENFPVLVLGTSDKNRNFHPISIAVSTGETEQDYGNIFRI----LASSCGTKYEPKVLIADSAEAITNGFESVFGSNFVRVYCWYHVSAKIKDRLKQIECPETRRELKSDIDLLQLAEDKLDFDAAVHLFRQKWSGVDAVKNFVGYFIGEYIDQRCGWYEGTAPGFPSTNNGLESINGLIKRQGTLRKRLPLGEFVNCISKLLSGWSSERDPQLPDYKRFRLEPVITIAAMTDAYNWLKDT-SRPSTRQKKINDTIIKFFVPAKGTRSLDEKDIANYIQLTEKKSWRKFETYRKTKEKLWVIEY--DIINWMQSRCNCPMFKKQHICKHLIGLAANRKDFNISDACKNVPIGIKRRPGRP 590          
BLAST of SWIM-type domain-containing protein vs. Planmine SMEST
Match: SMESG000040512.1 (SMESG000040512.1)

HSP 1 Score: 244.973 bits (624), Expect = 1.302e-76
Identity = 137/153 (89.54%), Postives = 142/153 (92.81%), Query Frame = 1
Query:  598 KIRNEVYGPPVISLGELENWLQSSSSIPELEDEAFVVNYKITYAXXXXXXXXXXXXXXXXXXHGSKFRFFISTIRLLKLASASTILNADATYKLVWQGYPILIIGTTDLDRHFHSFGLGICTNEKTADFNFIFSSINIGLKKINASLFNPRVL 1056
            +IRNEVYGPPVISLGELENWLQSSSSIPEL+DE FVVNYKITY+ EYECEESNEESDEDEENHG KFRFFISTIRLLKLASASTILNADATYKLVWQGYPILIIGTTDLDRHFHSFGLGICTNEKTADFNFIFSSINIGLKK    +F    +
Sbjct:   21 EIRNEVYGPPVISLGELENWLQSSSSIPELKDEGFVVNYKITYSYEYECEESNEESDEDEENHGFKFRFFISTIRLLKLASASTILNADATYKLVWQGYPILIIGTTDLDRHFHSFGLGICTNEKTADFNFIFSSINIGLKKNKCIIFQSSCI 173          
BLAST of SWIM-type domain-containing protein vs. Planmine SMEST
Match: SMESG000003282.1 (SMESG000003282.1)

HSP 1 Score: 194.126 bits (492), Expect = 6.610e-55
Identity = 88/99 (88.89%), Postives = 93/99 (93.94%), Query Frame = 1
Query: 1603 SVPQEQSTNYYVSASDATITQEDIDKVEKMRWTTFDQFTKRAFTVWRINLPNDKANWADGQCNCPAFFKKFICKHVVGISIRLKYCKVPAVAKNTSIGS 1899
             + ++QSTNYYVSASDATITQEDIDKVEKM WT FDQFTKRAFTVWRINLPNDKANWADGQCNCPAFFKK ICKHVV ISIRLKYCKVPA+AKNTSIG+
Sbjct:  228 CIDKQQSTNYYVSASDATITQEDIDKVEKMHWTIFDQFTKRAFTVWRINLPNDKANWADGQCNCPAFFKKLICKHVVCISIRLKYCKVPALAKNTSIGN 326          
BLAST of SWIM-type domain-containing protein vs. Planmine SMEST
Match: SMESG000003282.1 (SMESG000003282.1)

HSP 1 Score: 190.274 bits (482), Expect = 2.413e-53
Identity = 87/94 (92.55%), Postives = 90/94 (95.74%), Query Frame = 1
Query: 1618 QSTNYYVSASDATITQEDIDKVEKMRWTTFDQFTKRAFTVWRINLPNDKANWADGQCNCPAFFKKFICKHVVGISIRLKYCKVPAVAKNTSIGS 1899
            +STNYYVSASDATITQEDIDKVEKM WT FDQFTKRAFTVWRINLPNDKANWADGQCNCPAFFKK ICKHVV ISIRLKYCKVPA+AKNTSIG+
Sbjct:  253 ESTNYYVSASDATITQEDIDKVEKMHWTIFDQFTKRAFTVWRINLPNDKANWADGQCNCPAFFKKLICKHVVCISIRLKYCKVPALAKNTSIGN 346          
BLAST of SWIM-type domain-containing protein vs. Planmine SMEST
Match: SMESG000026165.1 (SMESG000026165.1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.266e-24
Identity = 51/113 (45.13%), Postives = 73/113 (64.60%), Query Frame = 1
Query: 1051 VLISDASNAIRKAYSQVFNKNE-IVMCWAHMRRNFVKKIESLVAKEDQNELIEDVDQLQLSQSQVIFEKASSLFVKKWRQKKATEFLDYMNMMWLTTHNTWYEGYMPFTPSTN 1386
            VLI+D SNAIR  +S+VF  +  + MCW HMR    KK+  +  K+  +E+++DVD LQLS+++ IF+ A +LF+KKW   K+ E  DY +  WL   + WYEG   + PSTN
Sbjct:    7 VLIADGSNAIRNPFSEVFGPDHSMAMCWYHMRERVAKKLCVIDDKDLCSEIMDDVDALQLSKNKPIFDMAVNLFLKKW---KSQERFDYFSREWLGLKSDWYEGLELYVPSTN 116          
BLAST of SWIM-type domain-containing protein vs. Planmine SMEST
Match: SMESG000004378.1 (SMESG000004378.1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.709e-19
Identity = 59/127 (46.46%), Postives = 84/127 (66.14%), Query Frame = 1
Query:  271 IWSYSYSNKTEEGKKVYYRCNQVKFKGKQCDSALHLLYDSRSDEVILFRAEAEHKHEENMSKSAISNEAXXXXXXXXXXXXXXXRMLEIFHERGIKPVPTTIQLRNQLNKIRNEVYGPPVISLGELE 651
            IWS S  N T EGK++ YRCN+V+   KQC +  ++L+ S +D V +F   ++H H+E+ S + I+ + + LI ELFKL+IKPK +LE   E+G+  VP   QL N L  +R ++YG P ISLGELE
Sbjct:    4 IWSQSNKNTTSEGKRICYRCNKVERHDKQCPAVANILHRSENDCVTIFETGSDHFHDESKS-TRINEQLRMLIDELFKLQIKPKHILETLKEKGL-LVPLRKQLSNYLVSLRKKLYGTPSISLGELE 128          
The following BLAST results are available for this feature:
BLAST of SWIM-type domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SWIM-type domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SWIM-type domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SWIM-type domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SWIM-type domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SWIM-type domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SWIM-type domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SWIM-type domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A4Y2WAS52.088e-9533.00SWIM-type domain-containing protein OS=Araneus ven... [more]
A0A226D5N13.171e-8235.02Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Fo... [more]
A0A5N4A0664.120e-6936.80Uncharacterized protein (Fragment) OS=Photinus pyr... [more]
A0A226D0221.000e-6728.95SWIM-type domain-containing protein OS=Folsomia ca... [more]
A0A226DBB11.165e-6729.13SWIM-type domain-containing protein OS=Folsomia ca... [more]
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BLAST of SWIM-type domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SWIM-type domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SWIM-type domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SWIM-type domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SWIM-type domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SWIM-type domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000040512.11.302e-7689.54SMESG000040512.1[more]
SMESG000003282.16.610e-5588.89SMESG000003282.1[more]
SMESG000003282.12.413e-5392.55SMESG000003282.1[more]
SMESG000026165.14.266e-2445.13SMESG000026165.1[more]
SMESG000004378.15.709e-1946.46SMESG000004378.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30012666 ID=SMED30012666|Name=SWIM-type domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=2291bp
TTTTTTTCTACAATTAGTACAAACTTTCAATAAATCGGTATGTTTTTCTA
CGTAAAGTCTTTATTTATTATAAACAAAATTAAAACAAATACTGAACTTA
TAATGGCTAATAATTTTGCAGAAGTTGAAGATTATCAGTCTGATCTTGAG
TTTGATGTTGAAGTTACAAGTTTAAAGAAACCACGAGCCAAAAAAGTGTC
CAAAGTTTGGACTCATGAAAAAGTATTTAAAAGTGCTGAAGAAGCAAAAA
ATGCAATTAAAGAAGAGAAGATATGGAGTTACTCTTATTCCAACAAAACT
GAAGAAGGTAAAAAAGTTTACTATCGATGCAATCAAGTTAAATTTAAAGG
CAAGCAATGTGATTCTGCATTACATTTACTTTACGACTCAAGATCAGACG
AAGTTATTCTTTTTAGGGCAGAAGCTGAGCATAAGCATGAAGAAAACATG
TCTAAATCTGCAATATCTAACGAAGCTAAAGAACTAATTAAAGAGTTGTT
TAAGCTTAAAATAAAACCTAAGAGAATGTTAGAAATCTTTCATGAACGAG
GTATAAAGCCTGTTCCTACTACTATACAATTAAGAAATCAATTAAACAAG
ATTAGAAATGAAGTTTACGGGCCACCAGTAATAAGTTTAGGTGAGCTTGA
AAATTGGCTTCAATCATCATCTTCTATACCAGAGTTAGAAGATGAAGCCT
TTGTAGTCAATTATAAAATAACTTATGCCGATGAATATGAGTGTGAAGAG
AGTAATGAAGAAAGCGATGAAGATGAAGAAAACCACGGCTCTAAATTTAG
ATTTTTTATAAGTACAATAAGATTACTTAAGCTAGCCTCAGCATCAACAA
TTTTAAATGCTGATGCAACTTATAAACTGGTTTGGCAGGGCTATCCAATT
TTAATCATTGGTACAACCGATTTAGATAGGCATTTTCATTCGTTTGGCCT
AGGTATATGTACCAATGAAAAAACTGCTGATTTTAATTTTATTTTTTCAA
GTATCAATATTGGCTTGAAAAAAATAAATGCATCATTATTCAATCCTCGT
GTATTGATTTCTGATGCTTCTAACGCTATACGTAAAGCTTATTCACAAGT
TTTTAATAAAAATGAAATTGTGATGTGTTGGGCACATATGCGTAGAAATT
TTGTCAAAAAAATCGAGTCTTTAGTAGCTAAAGAAGATCAAAACGAATTA
ATTGAAGATGTAGATCAACTTCAATTGTCACAAAGCCAAGTCATTTTTGA
AAAAGCAAGTTCTCTATTTGTTAAAAAATGGAGACAAAAAAAAGCGACTG
AGTTTTTAGACTATATGAATATGATGTGGCTTACGACACACAATACTTGG
TATGAAGGATACATGCCCTTCACGCCAAGTACTAACAATAATCTAGAGTC
AAATAATCGAGTTCTTAAAGACGAAGAAACTATTAGAGAGCGCACGCCAT
TATCTAGATTTAGCAAACAAGCTTTAGATATTGTTAAAAAGTGGTCACTA
GCATATCCTCGAAGTCTGAAGGAGTTTATTACAAAACAATCAATCGACAC
AGCATTATGGACACAGTCTTATCAATGGGCTAAAGAAAGCAAAGCAATTC
TTTCGGTGCCCCAAGAACAGTCGACAAACTACTATGTTTCAGCTAGTGAC
GCAACTATAACTCAAGAAGACATTGACAAAGTTGAAAAAATGCGCTGGAC
AACATTCGATCAATTTACGAAGCGAGCTTTTACTGTCTGGCGCATTAATT
TACCAAACGATAAAGCCAATTGGGCCGACGGTCAGTGCAATTGTCCAGCA
TTTTTTAAAAAATTTATTTGCAAGCATGTTGTCGGCATTTCAATCAGACT
TAAATATTGCAAAGTACCGGCAGTAGCTAAGAATACTTCTATTGGAAGTA
AACTACCAAGAGGAAGACCAACTAAAGCTAAAAAAGCCTTATTAAAACAA
TAATTTCAAATATTTTTATAATAGTCTTTGTGAAATAGTCTTTGTATTTT
TATGGATTTTTTTATTGTGTCACTTTTTGTTTATTCTTATGAATTTTTCA
TTGTTTTACTTAGTTTTTGTATTTTTTTACTTATAAAAATTAAAAATATT
ACCTATAATAAAATAATTAAATACCTAATGAATTTTATTTTTTACTTATA
CAATTAATATAATACTTAGCATTTTATAAATATTTACTTAGAAAAAAATA
CATAAAGGCACTAATAAAATACATAGCGTTTAGTAAAAATACATAGCGTA
TAAATAGGAGCCTAATAAAAAATACTAGTAAATTAGTCAAT
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protein sequence of SMED30012666-orf-1

>SMED30012666-orf-1 ID=SMED30012666-orf-1|Name=SMED30012666-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=638bp
MFFYVKSLFIINKIKTNTELIMANNFAEVEDYQSDLEFDVEVTSLKKPRA
KKVSKVWTHEKVFKSAEEAKNAIKEEKIWSYSYSNKTEEGKKVYYRCNQV
KFKGKQCDSALHLLYDSRSDEVILFRAEAEHKHEENMSKSAISNEAKELI
KELFKLKIKPKRMLEIFHERGIKPVPTTIQLRNQLNKIRNEVYGPPVISL
GELENWLQSSSSIPELEDEAFVVNYKITYADEYECEESNEESDEDEENHG
SKFRFFISTIRLLKLASASTILNADATYKLVWQGYPILIIGTTDLDRHFH
SFGLGICTNEKTADFNFIFSSINIGLKKINASLFNPRVLISDASNAIRKA
YSQVFNKNEIVMCWAHMRRNFVKKIESLVAKEDQNELIEDVDQLQLSQSQ
VIFEKASSLFVKKWRQKKATEFLDYMNMMWLTTHNTWYEGYMPFTPSTNN
NLESNNRVLKDEETIRERTPLSRFSKQALDIVKKWSLAYPRSLKEFITKQ
SIDTALWTQSYQWAKESKAILSVPQEQSTNYYVSASDATITQEDIDKVEK
MRWTTFDQFTKRAFTVWRINLPNDKANWADGQCNCPAFFKKFICKHVVGI
SIRLKYCKVPAVAKNTSIGSKLPRGRPTKAKKALLKQ*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000099neuron
PLANA:0002089reproductive organ
Vocabulary: INTERPRO
TermDefinition
IPR018289MULE_transposase_dom
IPR007527Znf_SWIM
Vocabulary: molecular function
TermDefinition
GO:0008270zinc ion binding