SWIM-type domain-containing protein
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30012666 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 22Note: Hover over icons to view figure legend
Homology
BLAST of SWIM-type domain-containing protein vs. TrEMBL
Match: A0A4Y2WAS5 (SWIM-type domain-containing protein OS=Araneus ventricosus OX=182803 GN=AVEN_1295_1 PE=4 SV=1) HSP 1 Score: 320.472 bits (820), Expect = 2.088e-95 Identity = 201/609 (33.00%), Postives = 327/609 (53.69%), Query Frame = 1 Query: 130 DYQSDLEFDVEVTSLKKPRAKKVSKVWTHEKVFXXXXXXXXXXXXXXIWSYSYSNKTEEGKKVYYRCNQVKFKGKQCDSALHLLYDSRSDEVILFRAEAEHKH--EENMSKSAISNEAXXXXXXXXXXXXXXXRMLEIFHERGIKPVPTTIQLRNQLNKIRNEVYGPPVISLGELENWLQSSSSIPELEDEAFVVNYKITYAXXXXXXXXXXXXXXXXXXHGSK--FRFFISTIRLLKLASASTILNADATYKLVWQGYPILIIGTTDLDRHFHSFGLGICTNEKTADFNFIFSSINIGLKKINASLFNPRVLISDASNAIRKAYSQVFN-KNEIVMCWAHMRRNFVKKIESLVAKEDQNELIEDVDQLQLSQSQVIFEKASSLFVKKWRQK---KATEFLDYMNMMWLTTHNTWYEGYMPFTPSTNNNLESNNRVLKDEETIRERTPLSRFSKQALD-IVKKWS---LAYPRSLKEFITKQSIDTALWTQSYQWAKESKAILSVPQEQSTNYYVSASDA--TITQEDIDKVEK--MRWTTFDQF-TKRAFTVWRINLPNDKANWADGQCNCPAFFKKFICKHVVGISIRLKYCKVPAVAKNTSIGSKL 1905 +Y S+ + ++ T+++K + +K ++W K F++AE A N + K W + + G KV YRC +++ +C + ++LL+ S S V L+ A+ EH + + N S ++ E + E K ++ F G+K P ++L+N L K+R E +GPP IS+ ++ NW + +P ED FV+ + E + G K + IST RLL+L + + DATYKL+WQGYP+LI+G++D++R FH F + +C NE +DF FIF + KIN + +NP++L++DAS+AI + VF +MC+ H +N K+ + +D++E+ D++ L L F S LF+KKW++K T F +Y +WLT++ WY G + P TNN LE+ N V+K E T RER P+ +F + + IVKKWS + K F K T +WT++YQWAK IL + +Y+ +S I+ E + E ++WT+FD++ T+ + +W++ + ++ + C+CP F KK+ICKH +G+ IR+ KVP AK +G KL Sbjct: 10 NYHSESDDEINETNVRKRKEQK-KRIWIKSKEFETAELAINYVDNFKTWKKITTYNSSAGCKVTYRCTAGEYRKNECPAGIYLLFHSESSVVSLYEAKNEHSNHVDGNRGLSMVTREMVRQLFEDGIRKPNA--IIAAFQNHGLKE-PEKLKLKNFLAKVRQEKFGPPTISVKDVFNWCNARMDVPVEEDTPFVLGVNV------------------EVDDGDKHDLKIVISTKRLLRLMIKTEGVQTDATYKLIWQGYPVLIVGSSDMNRTFHPFAIAVCNNETESDFAFIFKCVKDSCYKINETEWNPKILLADASSAITNGFKAVFGFPFRRLMCYFHAVKNIDGKLRGI---QDKDEIRNDIECLHLCPDDETFNIVSELFLKKWKEKNDVNITTFTEYFKSVWLTSNRHWYIGSRNYFPITNNGLEATNAVIKKEHTFRERLPVGQFLEVLENAIVKKWSNERDPVNPNYKPFYMKPQYSTKVWTEAYQWAKLEVKILEGKNGNQSVFYLPSSQVKQNISAEMVRSHENAYLKWTSFDEYKTEYSNCIWKVIVSASDSDGSVSTCSCPVFAKKYICKHSLGMLIRMGKEKVPNEAKGLPLGQKL 593
BLAST of SWIM-type domain-containing protein vs. TrEMBL
Match: A0A226D5N1 (Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Folsomia candida OX=158441 GN=Fcan01_25381 PE=4 SV=1) HSP 1 Score: 283.878 bits (725), Expect = 3.171e-82 Identity = 194/554 (35.02%), Postives = 286/554 (51.62%), Query Frame = 1 Query: 301 EEGKKVYYRCNQVKFKGKQCDSALHLLYDSRSDEVILFRAEAEHKHEENMSKSAISNEAXXXXXXXXXXXXXXXRMLEI-FHERGIKPVPTTIQLRNQLNKIRNEVYGPPVISLGELENWLQSSSSIPELEDEAFVVNYKITYAXXXXXXXXXXXXXXXXXXHGSKFRFFISTIRLLKLASASTILNADATYKLVWQGYPILIIGTTDLDRHFHSFGLGICTNEKTADFNFIFSSINIGLKKINASLFNPRVLISDASNAIRKAYSQVFN-KNEIVMCWAHMRRNFVKKIESLVAKEDQNELIE-DVDQLQLSQSQVIFEKASSLFVKKWRQKKATEFLDYMNMMWLTTHNTWYEGYMPFTPSTNNNLESNNRVLKDEETIRERTPLSRFSKQALDIVKKWSLAY-PRSL--KEFITKQSIDTALWTQSYQWAKESK-AILSVPQ--EQSTNYYVSASD-ATITQEDI----DKVEKMRWTTFDQFTKRAFTVWRINLPNDKANWADGQCNCPAFFKKFICKHVVGISIRLKYCKVPAVAKNTSIGSKLPRGRP 1920 ++GKK+YY FK K C +HL S V L H H+ K I +EAKE+I L K I ++++ +GI P P+ Q+ N++N + N ++SLG++ + + SS IP D+AFV Y I + +F F+ST RLL + S +L ADATYKL W+G+P+L++GT+D D HFH FG+ I + E DF+ +F LK + + F P VL++D + AI A+ VF + + V CW H+++N K ++S E Q + I D+D LQL+ ++ F A LF+KKW+ +F DY +L N WYEGY P P TNN E+ N +K+E T R+R PL IV WSL P SL K F T + L T+S+ W+ + K A L + + YY++ S + EDI +K+ K WT FD + K +W +N ++ W+ +CN +F KK++CKHV+GI++ K V A +G+K PRGRP Sbjct: 67 QDGKKIYYN-----FKIKDCPGKVHLYLPGNSQIVNLLTNGKPHDHD-GEGKHGIPSEAKEIIDSLRKDGITQPKLIQTNLRRQGIDP-PSRTQISNRINYL-NSKDENRIVSLGQISDLCRRSSEIPTQMDDAFVAGYSIEFEI-------------------KRFSLFMSTKRLLSMTSQCKLLQADATYKLNWEGFPVLVVGTSDKDSHFHPFGIAITSGETVEDFSSVFQV----LKGYDEN-FEPEVLVADCAEAITNAFQTVFRVEFKRVYCWFHVKQNVKKFLKSSKIPESQKKGISFDIDCLQLADNEEEFNIAKKLFIKKWKTGDTKDFYDYFETEYLNQRNGWYEGYAPGYPCTNNGPEAINATIKNENTFRKRLPLGELFVTLKKIVSGWSLDRNPVSLDCKIFATSPTYSLQLQTKSFNWSIDKKRAPLKSKKGCPGTVVYYITPSGLPALKSEDIIQYNNKMCKKTWTKFDTYKKCKERLWIVNY--NEEEWSSSRCNYTSFKKKYMCKHVMGIAVIRKDFTVRDEAVTVPVGTKRPRGRP 586
BLAST of SWIM-type domain-containing protein vs. TrEMBL
Match: A0A5N4A066 (Uncharacterized protein (Fragment) OS=Photinus pyralis OX=7054 GN=PPYR_14849 PE=4 SV=1) HSP 1 Score: 243.047 bits (619), Expect = 4.120e-69 Identity = 145/394 (36.80%), Postives = 212/394 (53.81%), Query Frame = 1 Query: 796 FRFFISTIRLLKLASASTILNADATYKLVWQGYPILIIGTTDLDRHFHSFGLGICTNEKTADFNFIFSSINIGLKKINASLFNPRVLISDASNAIRKAYSQVFNK-NEIVMCWAHMRRNFVKKIESLVAKEDQNELIEDVDQLQLSQSQVIFEKASSLFVKKWRQKKAT------EFLDYMNMMWLTTHNTWYEGYMPFTPSTNNNLESNNRVLKDEETIRERTPLSRFSKQAL--DIVKKWSLAYPR-----SLKEFITKQSIDTALWTQSYQWAKESKAILSVPQEQSTNYYVSASDAT--ITQEDID--KVEKMRWTTFDQFTKRAFTVWRINLPNDKANWADGQCNCPAFFKKFICKHVVGISIRLKYCKVPAVAKNTSIGSKLPRGRPT 1923 + +ST RLLKL + ADATYKLVWQGYP+LI+GT+D+ R FH + +C E ADF FIF ++ I+ ++ P VL++DAS AI + VF + C+ H+ +N I + K E+ D+ LQL +F A +LF+KKW K T +F++Y WL + WYEG PSTNN LES N +K E T+RER P+ +F +AL +V+KWS Y R + K F + + T LWT +YQW K + + T YY +++AT + QE++ K ++W FD F +++ TV ++ ++ QC C F K++IC+H +G+ + L KVP AK+ +G K RGRPT Sbjct: 15 LKIVLSTKRLLKLLGEVDKVQADATYKLVWQGYPVLIVGTSDICRKFHPLAVAVCFGEAEADFAFIFQAMKQSYMNIHQMIWKPNVLLADASVAITNGFKSVFGTPARRLQCFFHVLKNVDSVIRGITEK---TEIGRDLHALQLCIDDEVFIIAENLFLKKWESKNVTNHQAIKDFINYFKKTWLGINRFWYEGACARFPSTNNGLESINATIKKEHTLRERLPVGQFM-EALRTSLVEKWS--YERNPENPNYKPFFSTIKLTTKLWTDAYQWVKLKPKMFEEKSNEKTIYYTKSTNATEVLNQEEMQTWKNTYLKWECFDDF-RKSQTVLKLACYSENEELV-SQCTCSRFLKEYICEHSLGLLVILGKAKVPIEAKSVPLGQKRKRGRPT 400
BLAST of SWIM-type domain-containing protein vs. TrEMBL
Match: A0A226D022 (SWIM-type domain-containing protein OS=Folsomia candida OX=158441 GN=Fcan01_26941 PE=4 SV=1) HSP 1 Score: 244.973 bits (624), Expect = 1.000e-67 Identity = 163/563 (28.95%), Postives = 272/563 (48.31%), Query Frame = 1 Query: 274 WSYSYSNKTEEGKKVYYRCNQVKFKGKQCDSALHLLYDSRSDEVILFRAEAEHKHEENMSKSAISNEAXXXXXXXXXXXXXXXRMLEIFHERGIKPVPTTIQLRNQLNKIRNEVYGPPVISLGELENWLQSSSSIPELEDEAFVVNYKITYAXXXXXXXXXXXXXXXXXXHGSKFRFFISTIRLLKLASASTILNADATYKLVWQGYPILIIGTTDLDRHFHSFGLGICTNEKTADFNFIFSSINIGLKKINASLFNPRVLISDASNAIRKAYSQVFNKNEI-VMCWAHMRRNFVKKIESLVAKEDQNELIEDVDQLQLSQSQVIFEKASSLFVKKWRQKKATE-FLDYMNMMWLTTHNTWYEGYMPFTPSTNNNLESNNRVLKDEETIRERTPLSRFSKQALDIVKKWSLAYPRSL---KEFITKQSIDTALWTQSYQWAKESKAILSVPQEQSTN----YYVSASDA-TITQEDIDK----VEKMRWTTFDQFTKRAFTVWRINLPNDKANWADGQCNCPAFFKKFICKHVVGISIRLKYCKVPAVAKNTSIGSKLPRGRP 1920 + + +N+TE G K +Y+C +C + L+LL +VI ++ H H + S + ++L+ +L K I ++ P+P Q+ N +++ + P ++SLG+LE L + + P +D+ +V I + + F F +ST RL+++ + L+AD TYKLVW+ +P+L++GT+D +R+FH + + T E D+ IF L + + P+VLI+D++ AI + VF N + V CW H+ +++ + E + EL D+D LQL++ ++ F+ A LF +KW A + F+ Y ++ WYEG P PSTNN LES N ++K + T+R+R PL F ++ WS L K F + I A T +Y W K++ + S Q++ + ++V A ++ ++DI EK W F+ + K +W I D NW +CNCP F K+ ICKH++G++ K + KN IG K GRP Sbjct: 59 FRFKSANQTECGMKHFYKCKV----SSKCSAKLYLLLAEDGQDVIRYQTNTAHDHLQKNKTSGVQGPTRQLMVKLLKNGISGPSQIQASIRDSGLPIPNRKQISNAKAYLKS-IEAPRIVSLGDLEKQLSALLTEPTSQDQTILVGKIIDFEKKT-------------------FHFMLSTPRLMQVLTFGDCLHADGTYKLVWENFPVLVLGTSDKNRNFHPISIAVSTGETEQDYGNIFRI----LASSCGTKYEPKVLIADSAEAITNGFESVFGSNFVRVYCWYHVSAKIKDRLKQIECPETRRELKSDIDLLQLAEDKLDFDAAVHLFRQKWSGVDAVKNFVGYFIGEYIDQRCGWYEGTAPGFPSTNNGLESINGLIKRQGTLRKRLPLGEFVNCISKLLSGWSSERDPQLPDYKRFRLEPVITIAAMTDAYNWLKDT-SRPSTRQKKINDTIIKFFVPAKGTRSLDEKDIANYIQLTEKKSWRKFETYRKTKEKLWVIEY--DIINWMQSRCNCPMFKKQHICKHLIGLAANRKDFNISDACKNVPIGIKRRPGRP 590
BLAST of SWIM-type domain-containing protein vs. TrEMBL
Match: A0A226DBB1 (SWIM-type domain-containing protein OS=Folsomia candida OX=158441 GN=Fcan01_23227 PE=4 SV=1) HSP 1 Score: 244.588 bits (623), Expect = 1.165e-67 Identity = 164/563 (29.13%), Postives = 272/563 (48.31%), Query Frame = 1 Query: 274 WSYSYSNKTEEGKKVYYRCNQVKFKGKQCDSALHLLYDSRSDEVILFRAEAEHKHEENMSKSAISNEAXXXXXXXXXXXXXXXRMLEIFHERGIKPVPTTIQLRNQLNKIRNEVYGPPVISLGELENWLQSSSSIPELEDEAFVVNYKITYAXXXXXXXXXXXXXXXXXXHGSKFRFFISTIRLLKLASASTILNADATYKLVWQGYPILIIGTTDLDRHFHSFGLGICTNEKTADFNFIFSSINIGLKKINASLFNPRVLISDASNAIRKAYSQVFNKNEI-VMCWAHMRRNFVKKIESLVAKEDQNELIEDVDQLQLSQSQVIFEKASSLFVKKWRQKKATE-FLDYMNMMWLTTHNTWYEGYMPFTPSTNNNLESNNRVLKDEETIRERTPLSRFSKQALDIVKKWSLAYPRSL---KEFITKQSIDTALWTQSYQWAKESKAILSVPQEQSTN----YYVSASDA-TITQEDIDK----VEKMRWTTFDQFTKRAFTVWRINLPNDKANWADGQCNCPAFFKKFICKHVVGISIRLKYCKVPAVAKNTSIGSKLPRGRP 1920 + + +N+TE G K +Y+C +C + L+LL +VI ++ H H + S + ++L+ EL K I ++ P+P Q+ N +++ + P ++SLG+LE L + + P +D+ +V I + + F F +ST RL+++ + L+AD TYKLVW+ +P+L++GT+D +R+FH + + T E D+ IF L + + P+VLI+D++ AI + VF N + V CW H+ +++ + E + EL D+D LQL++ ++ F+ A LF +KW A + F+ Y ++ WYEG P PSTNN LES N ++K + T+R+R PL F ++ WS L K F + I A T +Y W K++ + S Q++ + ++V A ++ ++DI EK W F+ + K +W I D NW +CNCP F K+ ICKH++G++ K + KN IG K GRP Sbjct: 59 FRFKSANQTECGMKHFYKCKV----SSKCSAKLYLLLAEDGQDVIRYQTNTAHDHLQKNKTSGVQGPTRQLMVELLKNGISGPSQIQASIRDSGLPIPNRKQISNAKAYLKS-IEAPRIVSLGDLEKQLSALLTEPTSQDQTILVGNIIDFEKKT-------------------FHFMLSTPRLMQVLTFGDCLHADGTYKLVWENFPVLVLGTSDKNRNFHPISIAVSTGETEQDYGNIFRI----LASSCGTKYEPKVLIADSAEAITNGFESVFGSNFVRVYCWYHVSAKIKDRLKQIECPETRRELKSDIDLLQLAEDKLDFDAAVHLFRQKWSGVDAVKNFVGYFIGEYIDQRCGWYEGTAPGFPSTNNGLESINGLIKRQGTLRKRLPLGEFVNCISKLLSGWSSERDPQLPDYKRFRLEPVITIAAMTDAYNWLKDT-SRPSTRQKKINDTIIKFFVPAKGTRSLDEKDIANYIQLTEKKSWRKFETYRKTKEKLWVIEY--DIINWMQSRCNCPMFKKQHICKHLIGLAANRKDFNISDACKNVPIGIKRRPGRP 590
BLAST of SWIM-type domain-containing protein vs. Planmine SMEST
Match: SMESG000040512.1 (SMESG000040512.1) HSP 1 Score: 244.973 bits (624), Expect = 1.302e-76 Identity = 137/153 (89.54%), Postives = 142/153 (92.81%), Query Frame = 1 Query: 598 KIRNEVYGPPVISLGELENWLQSSSSIPELEDEAFVVNYKITYAXXXXXXXXXXXXXXXXXXHGSKFRFFISTIRLLKLASASTILNADATYKLVWQGYPILIIGTTDLDRHFHSFGLGICTNEKTADFNFIFSSINIGLKKINASLFNPRVL 1056 +IRNEVYGPPVISLGELENWLQSSSSIPEL+DE FVVNYKITY+ EYECEESNEESDEDEENHG KFRFFISTIRLLKLASASTILNADATYKLVWQGYPILIIGTTDLDRHFHSFGLGICTNEKTADFNFIFSSINIGLKK +F + Sbjct: 21 EIRNEVYGPPVISLGELENWLQSSSSIPELKDEGFVVNYKITYSYEYECEESNEESDEDEENHGFKFRFFISTIRLLKLASASTILNADATYKLVWQGYPILIIGTTDLDRHFHSFGLGICTNEKTADFNFIFSSINIGLKKNKCIIFQSSCI 173
BLAST of SWIM-type domain-containing protein vs. Planmine SMEST
Match: SMESG000003282.1 (SMESG000003282.1) HSP 1 Score: 194.126 bits (492), Expect = 6.610e-55 Identity = 88/99 (88.89%), Postives = 93/99 (93.94%), Query Frame = 1 Query: 1603 SVPQEQSTNYYVSASDATITQEDIDKVEKMRWTTFDQFTKRAFTVWRINLPNDKANWADGQCNCPAFFKKFICKHVVGISIRLKYCKVPAVAKNTSIGS 1899 + ++QSTNYYVSASDATITQEDIDKVEKM WT FDQFTKRAFTVWRINLPNDKANWADGQCNCPAFFKK ICKHVV ISIRLKYCKVPA+AKNTSIG+ Sbjct: 228 CIDKQQSTNYYVSASDATITQEDIDKVEKMHWTIFDQFTKRAFTVWRINLPNDKANWADGQCNCPAFFKKLICKHVVCISIRLKYCKVPALAKNTSIGN 326
BLAST of SWIM-type domain-containing protein vs. Planmine SMEST
Match: SMESG000003282.1 (SMESG000003282.1) HSP 1 Score: 190.274 bits (482), Expect = 2.413e-53 Identity = 87/94 (92.55%), Postives = 90/94 (95.74%), Query Frame = 1 Query: 1618 QSTNYYVSASDATITQEDIDKVEKMRWTTFDQFTKRAFTVWRINLPNDKANWADGQCNCPAFFKKFICKHVVGISIRLKYCKVPAVAKNTSIGS 1899 +STNYYVSASDATITQEDIDKVEKM WT FDQFTKRAFTVWRINLPNDKANWADGQCNCPAFFKK ICKHVV ISIRLKYCKVPA+AKNTSIG+ Sbjct: 253 ESTNYYVSASDATITQEDIDKVEKMHWTIFDQFTKRAFTVWRINLPNDKANWADGQCNCPAFFKKLICKHVVCISIRLKYCKVPALAKNTSIGN 346
BLAST of SWIM-type domain-containing protein vs. Planmine SMEST
Match: SMESG000026165.1 (SMESG000026165.1) HSP 1 Score: 99.7525 bits (247), Expect = 4.266e-24 Identity = 51/113 (45.13%), Postives = 73/113 (64.60%), Query Frame = 1 Query: 1051 VLISDASNAIRKAYSQVFNKNE-IVMCWAHMRRNFVKKIESLVAKEDQNELIEDVDQLQLSQSQVIFEKASSLFVKKWRQKKATEFLDYMNMMWLTTHNTWYEGYMPFTPSTN 1386 VLI+D SNAIR +S+VF + + MCW HMR KK+ + K+ +E+++DVD LQLS+++ IF+ A +LF+KKW K+ E DY + WL + WYEG + PSTN Sbjct: 7 VLIADGSNAIRNPFSEVFGPDHSMAMCWYHMRERVAKKLCVIDDKDLCSEIMDDVDALQLSKNKPIFDMAVNLFLKKW---KSQERFDYFSREWLGLKSDWYEGLELYVPSTN 116
BLAST of SWIM-type domain-containing protein vs. Planmine SMEST
Match: SMESG000004378.1 (SMESG000004378.1) HSP 1 Score: 83.9593 bits (206), Expect = 5.709e-19 Identity = 59/127 (46.46%), Postives = 84/127 (66.14%), Query Frame = 1 Query: 271 IWSYSYSNKTEEGKKVYYRCNQVKFKGKQCDSALHLLYDSRSDEVILFRAEAEHKHEENMSKSAISNEAXXXXXXXXXXXXXXXRMLEIFHERGIKPVPTTIQLRNQLNKIRNEVYGPPVISLGELE 651 IWS S N T EGK++ YRCN+V+ KQC + ++L+ S +D V +F ++H H+E+ S + I+ + + LI ELFKL+IKPK +LE E+G+ VP QL N L +R ++YG P ISLGELE Sbjct: 4 IWSQSNKNTTSEGKRICYRCNKVERHDKQCPAVANILHRSENDCVTIFETGSDHFHDESKS-TRINEQLRMLIDELFKLQIKPKHILETLKEKGL-LVPLRKQLSNYLVSLRKKLYGTPSISLGELE 128 The following BLAST results are available for this feature:
BLAST of SWIM-type domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of SWIM-type domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of SWIM-type domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of SWIM-type domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of SWIM-type domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of SWIM-type domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of SWIM-type domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 0
BLAST of SWIM-type domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of SWIM-type domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 0
BLAST of SWIM-type domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of SWIM-type domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of SWIM-type domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of SWIM-type domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of SWIM-type domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30012666 ID=SMED30012666|Name=SWIM-type domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=2291bpback to top protein sequence of SMED30012666-orf-1 >SMED30012666-orf-1 ID=SMED30012666-orf-1|Name=SMED30012666-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=638bp MFFYVKSLFIINKIKTNTELIMANNFAEVEDYQSDLEFDVEVTSLKKPRAback to top Annotated Terms
The following terms have been associated with this transcript:
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