Intraflagellar transport 43

Overview
NameIntraflagellar transport 43
Smed IDSMED30012622
Length (bp)679
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Intraflagellar transport 43 (SMED30012622) t-SNE clustered cells

Violin plots show distribution of expression levels for Intraflagellar transport 43 (SMED30012622) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Intraflagellar transport 43 (SMED30012622) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Intraflagellar transport 43 (SMED30012622) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020




SMED30012622

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 6

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
head regionSMED30012622h1SMcG0016281 SmedASXL_004841SmedAsxl_ww_GCZZ01PMID:27034770
Currie et al., 2016
whole organism asexual adult RNA-sequencing evidence
pharynxSMED30012622h1SMcG0016281 dd_Smed_v4_5237_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
protonephridiaSMED30012622h1SMcG0016281 dd_Smed_v4_5237_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30012622h1SMcG0016281 dd_Smed_v4_5237_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
head regionSMED30012622h1SMcG0016281 dd_Smed_v6_5237_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017
whole organism asexual adult RNA-sequencing evidence
epidermisSMED30012622h1SMcG0016281 dd_Smed_v4_5237_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017
whole organism asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
BLAST of Intraflagellar transport 43 vs. Ensembl Human
Match: IFT43 (intraflagellar transport 43 [Source:HGNC Symbol;Acc:HGNC:29669])

HSP 1 Score: 79.7221 bits (195), Expect = 8.595e-18
Identity = 46/130 (35.38%), Postives = 73/130 (56.15%), Query Frame = 1
Query:  175 GWGEDSFNQKRVSQSKNSNKEETILNKDD-SDNDREMNIPTIP--EASNEE---PQIAQAPNVMVNRVSTYKELDRDLSEHVAFTVFEDEIDLKILSNCLMLKSEVEEDDEQWEYDHLFAEVTSDLIGDF 546
            GW  DS    +  +  +   E+  L     + +D   +IP IP  E   EE    Q+A  P++ + RV TY++LD DL ++ A    + EIDLK+L+  L  + EV EDD  W++DHLF EV+S+++ ++
Sbjct:   62 GWAGDSVKASKFRRKASEEIEDFRLRPQSLNGSDYGGDIPIIPDLEEVQEEDFVLQVAAPPSIQIKRVMTYRDLDNDLMKYSAIQTLDGEIDLKLLTKVLAPEHEVREDDVGWDWDHLFTEVSSEVLTEW 191          
BLAST of Intraflagellar transport 43 vs. Ensembl Human
Match: IFT43 (intraflagellar transport 43 [Source:HGNC Symbol;Acc:HGNC:29669])

HSP 1 Score: 79.7221 bits (195), Expect = 8.595e-18
Identity = 46/130 (35.38%), Postives = 73/130 (56.15%), Query Frame = 1
Query:  175 GWGEDSFNQKRVSQSKNSNKEETILNKDD-SDNDREMNIPTIP--EASNEE---PQIAQAPNVMVNRVSTYKELDRDLSEHVAFTVFEDEIDLKILSNCLMLKSEVEEDDEQWEYDHLFAEVTSDLIGDF 546
            GW  DS    +  +  +   E+  L     + +D   +IP IP  E   EE    Q+A  P++ + RV TY++LD DL ++ A    + EIDLK+L+  L  + EV EDD  W++DHLF EV+S+++ ++
Sbjct:   62 GWAGDSVKASKFRRKASEEIEDFRLRPQSLNGSDYGGDIPIIPDLEEVQEEDFVLQVAAPPSIQIKRVMTYRDLDNDLMKYSAIQTLDGEIDLKLLTKVLAPEHEVREDDVGWDWDHLFTEVSSEVLTEW 191          
BLAST of Intraflagellar transport 43 vs. Ensembl Human
Match: IFT43 (intraflagellar transport 43 [Source:HGNC Symbol;Acc:HGNC:29669])

HSP 1 Score: 78.5666 bits (192), Expect = 2.770e-17
Identity = 58/182 (31.87%), Postives = 88/182 (48.35%), Query Frame = 1
Query:   61 VKSGRRAHQPIDEPVENADD------IIPEASPQKSSNKQQITKGWGEDSFNQKRVSQSKNSNKEETILNKDDSDNDR---------EMNIPTIP--EASNEE---PQIAQAPNVMVNRVSTYKELDRDLSEHVAFTVFEDEIDLKILSNCLMLKSEVEEDDEQWEYDHLFAEVTSDLIGDF 546
             K GRRA Q   +   + +       +  E S  K    +Q   GW  DS    + S    + K++  LN                 E +IP IP  E   EE    Q+A  P++ + RV TY++LD DL ++ A    + EIDLK+L+  L  + EV EDD  W++DHLF EV+S+++ ++
Sbjct:   20 AKMGRRAQQESAQAENHLNGKNSSLTLTGETSSAKLPRCRQ--GGWAGDSV---KASNGTQTGKQQLDLNACYHKTHHRDLGLASLEEADIPIIPDLEEVQEEDFVLQVAAPPSIQIKRVMTYRDLDNDLMKYSAIQTLDGEIDLKLLTKVLAPEHEVREDDVGWDWDHLFTEVSSEVLTEW 196          
BLAST of Intraflagellar transport 43 vs. Ensembl Fly
Match: IFT43 (gene:FBgn0032446 transcript:FBtr0300273)

HSP 1 Score: 60.8474 bits (146), Expect = 5.140e-11
Identity = 39/134 (29.10%), Postives = 68/134 (50.75%), Query Frame = 1
Query:  160 QQITKGWGEDSFNQKRVSQSKNSNKEETILNKDDSDNDREMN-IPTIPEASNEEPQI-----AQAPNVMVNRVSTYKELDRDLSEHVAFTVFEDEIDLKILSNCLMLKSEVEEDDEQWEYDHLFAEVTSDLIGD 543
            ++I+ GW +     K +   KNS  +E       + N    + IP IP+  + + +I      + P +  +R +  KE + DL    AF+   D  DL IL++CL+ +  + E D+ W++D LF EVT+++  D
Sbjct:   79 RRISGGWADSGL--KGLKSKKNSFDDERFKQTKSATNSIPTDDIPVIPDMDDVKDEIMLNEIVEPPTIGTSRSAVLKEANSDLLSQYAFSAV-DGFDLSILTDCLVPQESLNEKDDLWQWDKLFTEVTAEIHSD 209          
BLAST of Intraflagellar transport 43 vs. Ensembl Xenopus
Match: rgs7bp (regulator of G-protein signaling 7 binding protein [Source:Xenbase;Acc:XB-GENE-1001518])

HSP 1 Score: 92.0485 bits (227), Expect = 2.068e-22
Identity = 59/172 (34.30%), Postives = 94/172 (54.65%), Query Frame = 1
Query:   52 KKTVKSGRRAHQPIDEPVENADDIIPEASPQKSSNKQQITKG-WGEDSFNQKRVSQSKNSNKEETILNKDDSD-NDREMNIPTIPEASNEEP-----QIAQAPNVMVNRVSTYKELDRDLSEHVAFTVFEDEIDLKILSNCLMLKSEVEEDDEQWEYDHLFAEVTSDLIGDF 546
            +  VK GRRA    +   E AD       P +    + + +G W +DS    + ++    + E++ L +   D +D   +IP IP+  + +      Q+A  P+V VNRV TYK+LD DL  H AF   + +IDLK+L+  L  + EV E++ QW++D LF EV+S+LI ++
Sbjct:   14 RSGVKMGRRARASQENQQETAD--ASRNQPGREGPPKPLRQGGWADDSSGPSKSTKRMTEDVEDSRLKQQSLDESDEGEDIPVIPDLEDVQEEDLALQVASPPSVQVNRVLTYKDLDNDLMRHAAFQTLDGDIDLKLLTKVLSPEPEVREENVQWDWDLLFTEVSSELITEW 183          
BLAST of Intraflagellar transport 43 vs. Ensembl Mouse
Match: Ift43 (intraflagellar transport 43 [Source:MGI Symbol;Acc:MGI:1923661])

HSP 1 Score: 85.1149 bits (209), Expect = 5.359e-20
Identity = 61/174 (35.06%), Postives = 95/174 (54.60%), Query Frame = 1
Query:   61 VKSGRRAHQPIDEPVENADDI-------IPEASPQKSSNKQQITKGWGEDSFNQKRVSQSKNSNKEETILNKDD---SDNDREMNIPTIPEASNEE--PQIAQAPNVMVNRVSTYKELDRDLSEHVAFTVFEDEIDLKILSNCLMLKSEVEEDDEQWEYDHLFAEVTSDLIGDF 546
             K GRRAHQ   +  EN  +          EA P K   +Q    GW +DS    ++ +  +   E+  L + +   SD+D    IP + +   E+   Q+A  P++ VNRV TY++LD DL ++ AF   + EIDLK+L+  L  + EV EDD  W++DHL+ EV+S+L+ ++
Sbjct:   20 AKMGRRAHQESTQ-AENYLNSKNSSLTQTGEAPPPKPPRRQ---GGWADDSMKMAKLGKKVSEEMEDHRLRQQNLMGSDDDDIPVIPDLEDVQEEDFVLQVASPPSIQVNRVMTYRDLDNDLMKYSAFQTLDGEIDLKLLTKVLAPEHEVREDDVGWDWDHLYTEVSSELLTEW 189          
BLAST of Intraflagellar transport 43 vs. Ensembl Mouse
Match: Ift43 (intraflagellar transport 43 [Source:MGI Symbol;Acc:MGI:1923661])

HSP 1 Score: 82.8037 bits (203), Expect = 4.241e-19
Identity = 57/169 (33.73%), Postives = 91/169 (53.85%), Query Frame = 1
Query:   61 VKSGRRAHQPIDEPVENADDI-------IPEASPQKSSNKQQITKGWGEDSFNQKRVSQSKNSNKEETILNKDDSDNDREMNIPTIPEASNEEPQIAQAPNVMVNRVSTYKELDRDLSEHVAFTVFEDEIDLKILSNCLMLKSEVEEDDEQWEYDHLFAEVTSDLIGDF 546
             K GRRAHQ   +  EN  +          EA P K   +Q    GW +DS        + +  +++ ++  DD D     ++  + E  +   Q+A  P++ VNRV TY++LD DL ++ AF   + EIDLK+L+  L  + EV EDD  W++DHL+ EV+S+L+ ++
Sbjct:   20 AKMGRRAHQESTQ-AENYLNSKNSSLTQTGEAPPPKPPRRQ---GGWADDSMKM-----ANHRLRQQNLMGSDDDDIPVIPDLEDVQE-EDFVLQVASPPSIQVNRVMTYRDLDNDLMKYSAFQTLDGEIDLKLLTKVLAPEHEVREDDVGWDWDHLYTEVSSELLTEW 178          
BLAST of Intraflagellar transport 43 vs. Ensembl Mouse
Match: Ift43 (intraflagellar transport 43 [Source:MGI Symbol;Acc:MGI:1923661])

HSP 1 Score: 55.0694 bits (131), Expect = 2.216e-9
Identity = 47/141 (33.33%), Postives = 72/141 (51.06%), Query Frame = 1
Query:   70 GRRAHQPIDEPVENADDI-------IPEASPQKSSNKQQITKGWGEDSFNQKRVSQSKNSNKEETILNKDD---SDNDREMNIPTIPEASNEE--PQIAQAPNVMVNRVSTYKELDRDLSEHVAFTVFEDEIDLKILSNCL 456
            GRRAHQ   +  EN  +          EA P K   +Q    GW +DS    ++ +  +   E+  L + +   SD+D    IP + +   E+   Q+A  P++ VNRV TY++LD DL ++ AF   + EIDLK+L+  L
Sbjct:    2 GRRAHQESTQ-AENYLNSKNSSLTQTGEAPPPKPPRRQ---GGWADDSMKMAKLGKKVSEEMEDHRLRQQNLMGSDDDDIPVIPDLEDVQEEDFVLQVASPPSIQVNRVMTYRDLDNDLMKYSAFQTLDGEIDLKLLTKVL 138          
BLAST of Intraflagellar transport 43 vs. UniProt/SwissProt
Match: sp|Q28CW2|IFT43_XENTR (Intraflagellar transport protein 43 homolog OS=Xenopus tropicalis OX=8364 GN=ift43 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.096e-21
Identity = 59/172 (34.30%), Postives = 94/172 (54.65%), Query Frame = 1
Query:   52 KKTVKSGRRAHQPIDEPVENADDIIPEASPQKSSNKQQITKG-WGEDSFNQKRVSQSKNSNKEETILNKDDSD-NDREMNIPTIPEASNEEP-----QIAQAPNVMVNRVSTYKELDRDLSEHVAFTVFEDEIDLKILSNCLMLKSEVEEDDEQWEYDHLFAEVTSDLIGDF 546
            +  VK GRRA    +   E AD       P +    + + +G W +DS    + ++    + E++ L +   D +D   +IP IP+  + +      Q+A  P+V VNRV TYK+LD DL  H AF   + +IDLK+L+  L  + EV E++ QW++D LF EV+S+LI ++
Sbjct:   14 RSGVKMGRRARASQENQQETAD--ASRNQPGREGPPKPLRQGGWADDSSGPSKSTKRMTEDVEDSRLKQQSLDESDEGEDIPVIPDLEDVQEEDLALQVASPPSVQVNRVLTYKDLDNDLMRHAAFQTLDGDIDLKLLTKVLSPEPEVREENVQWDWDLLFTEVSSELITEW 183          
BLAST of Intraflagellar transport 43 vs. UniProt/SwissProt
Match: sp|Q3B8E9|IFT43_XENLA (Intraflagellar transport protein 43 homolog OS=Xenopus laevis OX=8355 GN=ift43 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 8.433e-21
Identity = 56/171 (32.75%), Postives = 94/171 (54.97%), Query Frame = 1
Query:   52 KKTVKSGRRAHQPIDEPVENADDIIPEASPQKSSNKQQITKGWGEDSFNQKRVSQSKNSNKEETILNKDDSD-NDREMNIPTIPEASNEEP-----QIAQAPNVMVNRVSTYKELDRDLSEHVAFTVFEDEIDLKILSNCLMLKSEVEEDDEQWEYDHLFAEVTSDLIGDF 546
            +  VK GRRA    +   E AD +    + ++   K     GW +DS    + ++    + E++ L +   D +D   +IP IP+  + +      Q+A  P+V VNRV TY++LD DL  H AF   + ++DLK+L+  L  + EV E++ +W++D LF EV+S+LI ++
Sbjct:   14 RTGVKMGRRARAAQETQQETAD-VSRNQTGREGPPKPLRQGGWADDSSGPSKSTRRMTDDVEDSRLKQQSLDESDEGEDIPVIPDLEDVQEEDLALQVASPPSVQVNRVMTYRDLDNDLMRHAAFQSLDGDVDLKLLTKVLSPEPEVREENVRWDWDLLFTEVSSELITEW 183          
BLAST of Intraflagellar transport 43 vs. UniProt/SwissProt
Match: sp|B5G1P1|IFT43_TAEGU (Intraflagellar transport protein 43 homolog OS=Taeniopygia guttata OX=59729 GN=IFT43 PE=2 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 9.099e-21
Identity = 56/179 (31.28%), Postives = 93/179 (51.96%), Query Frame = 1
Query:   58 TVKSGRRAHQPI---------DEPVENADDIIPEASPQKSSNKQQITKGWGEDSFNQKRVSQSKNSNKEE--TILNKDDSDNDREMNIPTIPEASNEE-----PQIAQAPNVMVNRVSTYKELDRDLSEHVAFTVFEDEIDLKILSNCLMLKSEVEEDDEQWEYDHLFAEVTSDLIGDF 546
             +K GRRA Q I         + P  +  ++ P   P++         GW +D       S  K++ + E   +  +    +D   +IP IP+  + +      Q+A  P+V VNRV TY +LD+DL ++ AF   + E+DLK+L+  L  + E+ EDD  W++DHLF EV+S+L+ ++
Sbjct:   19 VLKMGRRARQDIFAGENLSRKNSPSASLGEVPPPKPPRRQG-------GWADDPVLAPTKSGRKHAEEVEDHRLRQQSLEASDDGGDIPVIPDLEDVQDEDLAMQVAAPPSVQVNRVLTYHDLDKDLMKYAAFQTLDGEVDLKLLTKVLAPEHELREDDVSWDWDHLFTEVSSELVTEW 190          
BLAST of Intraflagellar transport 43 vs. UniProt/SwissProt
Match: sp|E2QSX5|IFT43_CANLF (Intraflagellar transport protein 43 homolog OS=Canis lupus familiaris OX=9615 GN=IFT43 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.359e-20
Identity = 54/174 (31.03%), Postives = 92/174 (52.87%), Query Frame = 1
Query:   64 KSGRRAHQPIDE-----PVENADDIIPEASPQKSSNKQQITKGWGEDSFNQKRVSQSKNSNKEET---ILNKDDSDNDREMNIPTIPEASNEEP-----QIAQAPNVMVNRVSTYKELDRDLSEHVAFTVFEDEIDLKILSNCLMLKSEVEEDDEQWEYDHLFAEVTSDLIGDF 546
            + GRRA Q   +       +N+  +  E +P     ++Q   GW +DS    +  +  +   EE    +  +    +D   +IP IP+  + +      Q+A  P++ VNRV TY++LD DL ++ AF   + EIDLK+L+  L  + EV EDD  W++D L+ EV+S+L+ ++
Sbjct:   21 RMGRRAQQESAQVENHLSGKNSSILTGEVAPPPKPPRRQ--GGWADDSMKTSKSGRRASEEVEEGSHRLRQQSFGGSDDGGDIPVIPDLEDVQEEDFALQVAAPPSIQVNRVMTYRDLDNDLMKYAAFQTLDGEIDLKLLTKVLAPEHEVREDDVNWDWDRLYTEVSSELLSEW 192          
BLAST of Intraflagellar transport 43 vs. UniProt/SwissProt
Match: sp|Q2TBN9|IFT43_BOVIN (Intraflagellar transport protein 43 homolog OS=Bos taurus OX=9913 GN=IFT43 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.175e-19
Identity = 63/179 (35.20%), Postives = 94/179 (52.51%), Query Frame = 1
Query:   61 VKSGRRAHQPIDEPVEN-------ADDIIPEASPQKSSNKQQITKGWGEDSF----NQKRVSQSKNSNK-EETILNKDDSDNDREMNIPTIP--EASNEEP---QIAQAPNVMVNRVSTYKELDRDLSEHVAFTVFEDEIDLKILSNCLMLKSEVEEDDEQWEYDHLFAEVTSDLIGDF 546
             K GRRA Q   +  EN       +  +  E  P K   +Q     W E S     +Q+R S+    ++  +  L++ D   D    IP IP  E   EE    Q+A  P++ VNRV TY++LD DL ++ AF   + EIDLK+L+  L  + EV EDD  W++DHL+ EV+S+L+ ++
Sbjct:   20 AKMGRRAQQESTQ-AENHLSGKNSSLTLTAEVPPPKPPRRQ---GRWAEASVKVSKSQRRASEEIQDHRLRQQSLDRSDDGGD----IPVIPDLEEVQEEDFVLQVAAPPSIQVNRVMTYRDLDNDLMKYSAFQTLDGEIDLKLLTKVLAPEHEVREDDVSWDWDHLYTEVSSELLSEW 190          
BLAST of Intraflagellar transport 43 vs. TrEMBL
Match: A0A1I8HV32 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig025147g3 PE=4 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 4.150e-25
Identity = 67/183 (36.61%), Postives = 102/183 (55.74%), Query Frame = 1
Query:   40 SFRPKKTVKSGRRAHQPIDEPVENADDIIPEASPQKSSNKQQITKGWGEDSFNQKRVSQSKNSNKEETILN-----KDDSDNDREMNIPTI----PEAS--NEEPQIAQAPNVMVNRVSTYKELDRDLSEHVAFTVFEDEIDLKILSNCLMLKSEVEEDDEQWEYDHLFAEVTSDLIGDFSKQ 555
            S + KK  + GRRA++  D       D    A+P++         GWG++     R + S     ++ + +     K  SD+D    IP +    P AS  NE P++A+AP++ VNRV+TY+ELD DL+ H +F   ++EIDLK+L+ CL    +++E DE W++D LFAEVT DL+ D   Q
Sbjct:    9 STKGKKKARMGRRANEEEDSAGGTTADG--GAAPKRRG-------GWGDEP---PRTAGSGGRRADDELGDDKFREKRFSDSDGAAAIPELKEEAPVASSVNEPPEMAKAPSIAVNRVATYRELDFDLNRHASFATLDNEIDLKLLTRCLAADQDLQEPDEYWDWDRLFAEVTGDLLVDTGDQ 179          
BLAST of Intraflagellar transport 43 vs. TrEMBL
Match: A0A267DWM3 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig025147g2 PE=4 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 9.817e-25
Identity = 65/186 (34.95%), Postives = 101/186 (54.30%), Query Frame = 1
Query:   40 SFRPKKTVKSGRRAHQPIDEPVENADDIIPEASPQKSSNKQQITKGWGEDSFNQKRVSQSKNSNKEETILN-----KDDSDNDREMNIPTIPE---------ASNEEPQIAQAPNVMVNRVSTYKELDRDLSEHVAFTVFEDEIDLKILSNCLMLKSEVEEDDEQWEYDHLFAEVTSDLIGDFSKQ 555
            S + KK  + GRRA++  D       D    A+P++         GWG++     R + S     ++ + +     K  SD+D +     IPE         + NE P++A+AP++ VNRV+TY+ELD DL+ H +F   ++EIDLK+L+ CL    +++E DE W++D LFAEVT DL+ D   Q
Sbjct:    9 STKGKKKARMGRRANEEEDSAGGTTADG--GAAPKRRG-------GWGDEP---PRTAGSGGRRADDELGDDKFREKRFSDSDDDGGAAAIPELKEEAPVASSVNEPPEMAKAPSIAVNRVATYRELDFDLNRHASFATLDNEIDLKLLTRCLAADQDLQEPDEYWDWDRLFAEVTGDLLVDTGDQ 182          
BLAST of Intraflagellar transport 43 vs. TrEMBL
Match: V3Z7J6 (Uncharacterized protein OS=Lottia gigantea OX=225164 GN=LOTGIDRAFT_204506 PE=4 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.411e-23
Identity = 67/182 (36.81%), Postives = 100/182 (54.95%), Query Frame = 1
Query:   55 KTVKSGRRAHQ-------PIDEPVENADDIIPEASPQK-----SSNKQQITKGWGEDSFNQKR---VSQSKNSNKEETILNKDDSDND-REMNIPTIPEASNEE-----PQIAQAPNVMVNRVSTYKELDRDLSEHVAFTVFEDEIDLKILSNCLMLKSEVEEDDEQWEYDHLFAEVTSDLI 537
            + VK GRRA         P +   E   ++IPEAS Q           +   GWGE+   + R   + +   + ++E +  +   D+D  E +IP IPE   +       ++A APNV VNRV+T++ELD DL  HVAF   ++EIDLK+L+  L  + ++ EDD+ W++D LF EVTS+LI
Sbjct:   14 RNVKQGRRAKARKESAAPPPELDDEGQGELIPEASNQNLDEGPPGRPSRAVSGWGEEGGRRPRNRQLGEGFETYEDERLRPRSPVDSDGSESDIPIIPELEEQHEEDLSTKVAIAPNVSVNRVATFRELDNDLLRHVAFLTLDNEIDLKLLTKNLSPEEDLIEDDKPWDWDRLFTEVTSELI 195          
BLAST of Intraflagellar transport 43 vs. TrEMBL
Match: A0A2D4JYR3 (Uncharacterized protein OS=Micrurus paraensis OX=1970185 PE=4 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.324e-22
Identity = 69/175 (39.43%), Postives = 97/175 (55.43%), Query Frame = 1
Query:   52 KKTVKSGRRAHQPIDEPVENADDIIPEASPQKSSNKQQITKG-WGEDSFNQKRVSQSKNSNKEETI----LNKDDSDNDREMNIPTIP--EASNEE---PQIAQAPNVMVNRVSTYKELDRDLSEHVAFTVFEDEIDLKILSNCLMLKSEVEEDDEQWEYDHLFAEVTSDLIGDF 546
            K  VK GRRAHQ    P EN        + Q+ S+K  I +G W    F    VS+SK    E+ +    L +  ++ D   +IP IP  E   EE    Q+A  P+V VNRV TY++LD DL ++ AF   + EIDLK+LS  L  + EV EDD  W+++HL+ EV S+L+ ++
Sbjct:   13 KGVVKMGRRAHQDFF-PEENHLSQTNSPAAQRPSSKPHIREGVWS--GFVGVNVSKSKKKPAEQEVEDHRLRQQSTEADNGEDIPVIPDLEEVQEEDFAMQVAAPPSVQVNRVLTYRDLDNDLMKYAAFQTLDGEIDLKLLSKVLAPEQEVREDDVIWDWNHLYTEVASELLSEW 184          
BLAST of Intraflagellar transport 43 vs. TrEMBL
Match: A0A2D4N759 (Uncharacterized protein OS=Micrurus spixii OX=129469 PE=4 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.324e-22
Identity = 69/175 (39.43%), Postives = 97/175 (55.43%), Query Frame = 1
Query:   52 KKTVKSGRRAHQPIDEPVENADDIIPEASPQKSSNKQQITKG-WGEDSFNQKRVSQSKNSNKEETI----LNKDDSDNDREMNIPTIP--EASNEE---PQIAQAPNVMVNRVSTYKELDRDLSEHVAFTVFEDEIDLKILSNCLMLKSEVEEDDEQWEYDHLFAEVTSDLIGDF 546
            K  VK GRRAHQ    P EN        + Q+ S+K  I +G W    F    VS+SK    E+ +    L +  ++ D   +IP IP  E   EE    Q+A  P+V VNRV TY++LD DL ++ AF   + EIDLK+LS  L  + EV EDD  W+++HL+ EV S+L+ ++
Sbjct:   13 KGVVKMGRRAHQDFF-PEENHLSQTNSPAAQRPSSKPHIREGVWS--GFVGVNVSKSKKKPAEQEVEDHRLRQQSTEADNGEDIPVIPDLEEVQEEDFAMQVAAPPSVQVNRVLTYRDLDNDLMKYAAFQTLDGEIDLKLLSKVLAPEQEVREDDVIWDWNHLYTEVASELLSEW 184          
BLAST of Intraflagellar transport 43 vs. Ensembl Cavefish
Match: IFT43 (intraflagellar transport 43 [Source:NCBI gene;Acc:103033244])

HSP 1 Score: 87.8113 bits (216), Expect = 3.178e-21
Identity = 55/152 (36.18%), Postives = 80/152 (52.63%), Query Frame = 1
Query:  106 ENADDIIPEASPQKSSNKQQITKGWGEDSFNQKRVSQSKNSNKEET----ILNKDDSDNDREMNIPTIP---EASNEE--PQIAQAPNVMVNRVSTYKELDRDLSEHVAFTVFEDEIDLKILSNCLMLKSEVEEDDEQWEYDHLFAEVTSDL 534
            E  DD  P   P K   +Q    GW E++         +    EE     +  +    +D E +IP IP   E   E+   Q+A  P++ VNRV TY++LD DL ++ AF   + EIDLK+L+  L  + EV E+D  W++DHLF EV+S+L
Sbjct:   23 EEEDDTGP---PPKPPRRQ---GGWAEETSGTGSAKSGRRQGAEEVEDRRLRPQTPEGSDDESDIPVIPDLDEVQEEDLTMQVAAPPSIQVNRVMTYRDLDNDLMKYSAFQTLDGEIDLKLLTKVLAPEQEVREEDVGWDWDHLFTEVSSEL 168          
BLAST of Intraflagellar transport 43 vs. Ensembl Cavefish
Match: IFT43 (intraflagellar transport 43 [Source:NCBI gene;Acc:103033244])

HSP 1 Score: 64.6994 bits (156), Expect = 1.052e-12
Identity = 42/126 (33.33%), Postives = 62/126 (49.21%), Query Frame = 1
Query:  130 EASPQKSSNKQQITKGWGEDSFNQKRVSQSKNSNKEET----ILNKDDSDNDREMNIPTIP---EASNEE--PQIAQAPNVMVNRVSTYKELDRDLSEHVAFTVFEDEIDLKILSNCLMLKSEVEE 480
            E  P K   +Q    GW E++         +    EE     +  +    +D E +IP IP   E   E+   Q+A  P++ VNRV TY++LD DL ++ AF   + EIDLK+L+  L  + EV E
Sbjct:   23 EGPPPKPPRRQ---GGWAEETSGTGSAKSGRRQGAEEVEDRRLRPQTPEGSDDESDIPVIPDLDEVQEEDLTMQVAAPPSIQVNRVMTYRDLDNDLMKYSAFQTLDGEIDLKLLTKVLAPEQEVRE 145          
BLAST of Intraflagellar transport 43 vs. Ensembl Cavefish
Match: IFT43 (intraflagellar transport 43 [Source:NCBI gene;Acc:103033244])

HSP 1 Score: 63.5438 bits (153), Expect = 2.932e-12
Identity = 45/134 (33.58%), Postives = 65/134 (48.51%), Query Frame = 1
Query:  106 ENADDIIPEASPQKSSNKQQITKGWGEDSFNQKRVSQSKNSNKEET----ILNKDDSDNDREMNIPTIP---EASNEE--PQIAQAPNVMVNRVSTYKELDRDLSEHVAFTVFEDEIDLKILSNCLMLKSEVEE 480
            E  DD  P   P K   +Q    GW E++         +    EE     +  +    +D E +IP IP   E   E+   Q+A  P++ VNRV TY++LD DL ++ AF   + EIDLK+L+  L  + EV E
Sbjct:   23 EEEDDTGP---PPKPPRRQ---GGWAEETSGTGSAKSGRRQGAEEVEDRRLRPQTPEGSDDESDIPVIPDLDEVQEEDLTMQVAAPPSIQVNRVMTYRDLDNDLMKYSAFQTLDGEIDLKLLTKVLAPEQEVRE 150          
BLAST of Intraflagellar transport 43 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000008891.1 (pep scaffold:Pmarinus_7.0:GL476825:10523:32821:-1 gene:ENSPMAG00000008049.1 transcript:ENSPMAT00000008891.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 82.8037 bits (203), Expect = 3.900e-20
Identity = 46/146 (31.51%), Postives = 78/146 (53.42%), Query Frame = 1
Query:  136 SPQKSSNKQQITKGWGEDSFNQKRVSQSKNSNK---EETILNKDDSDNDRE-MNIPTIPEASNEE-----PQIAQAPNVMVNRVSTYKELDRDLSEHVAFTVFEDEIDLKILSNCLMLKSEVEEDDEQWEYDHLFAEVTSDLIGDF 546
            SP       +   GW +DS    R  + +++     E+T L +   +   +  +IP IP+  + +      Q+A  P++ VNRV T+K+LD DL  H AF   + +IDLK+L+  L  + E+ EDD  W++  L+ EV+S+L  ++
Sbjct:   10 SPGPPPKPSRRHGGWAQDSAGSARSGKIRSAGSVDVEDTRLRQASPEPSEDGADIPVIPDLDDMQEDDLTAQVAAPPSMQVNRVMTFKDLDSDLMTHAAFQTLDGDIDLKLLTRVLAPEPEIREDDGPWDWALLYTEVSSELTSEW 155          
BLAST of Intraflagellar transport 43 vs. Ensembl Nematostella
Match: EDO42250 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S2A2])

HSP 1 Score: 80.4925 bits (197), Expect = 2.433e-19
Identity = 54/143 (37.76%), Postives = 81/143 (56.64%), Query Frame = 1
Query:  139 PQKSSNKQQITKGWGEDSFNQKRVSQSKNSNKEETILNKDDSDNDREMNIPTIP--EASNEE---PQIAQAPNVMVNRVSTYKELDRDLSEHVAFTVFEDEIDLKILSNCLMLKSEVEEDDEQWEYDHLFAEVTSDLIGDFSK 552
            P + S +Q    GW +D+  +K+        K E +  ++D   D + +I  IP  E   EE    QIA  P+V VNRV+TYKELD    +H A    + +IDLK+LSN L  +SEV E+D+ W+++ LF E+ S+L  ++ K
Sbjct:    2 PPRPSRRQ---GGWADDTPKEKK--------KGERLRVENDKPKDEDNDILVIPDLEEVQEEDMATQIAAPPSVQVNRVATYKELDSYYQKHSALFSLDGDIDLKLLSNVLSPESEVFEEDKAWDWNRLFTEIASELQTEWDK 133          
BLAST of Intraflagellar transport 43 vs. Ensembl Medaka
Match: IFT43 (intraflagellar transport 43 [Source:NCBI gene;Acc:101166174])

HSP 1 Score: 85.8853 bits (211), Expect = 2.480e-20
Identity = 58/178 (32.58%), Postives = 93/178 (52.25%), Query Frame = 1
Query:   49 PKKTVKSGRRAHQPIDEPV--------ENADDIIPEASPQKSSNKQQITKGWGEDSFNQKRVSQSKNSN--KEETILNKDDSDNDREMNIPTIP---EASNEE--PQIAQAPNVMVNRVSTYKELDRDLSEHVAFTVFEDEIDLKILSNCLMLKSEVEEDDEQWEYDHLFAEVTSDLI 537
            PK   KSGRRA    ++          +++     E  P K + +Q    GW E+S      +   +++      +  +    +D E +IP IP   E   E+   Q+A  P++ V++V TY++LD DL  + AF   + EIDLK+L+  L  + EV+EDD  W++DHLF EV+S+L+
Sbjct:   13 PKNVAKSGRRARPQANQSSFEDSRHARKSSTSASLEGPPPKPARRQ---GGWAEESSGSAFSNSYAHTSCSYSHRLRPQTPKGSDDEGDIPVIPDLDEVQEEDLTMQVAVPPSIHVSQVMTYRDLDNDLKHYSAFQTLDGEIDLKLLTKVLAPEQEVKEDDVSWDWDHLFTEVSSELL 187          
BLAST of Intraflagellar transport 43 vs. Ensembl Medaka
Match: IFT43 (intraflagellar transport 43 [Source:NCBI gene;Acc:101166174])

HSP 1 Score: 84.3445 bits (207), Expect = 7.832e-20
Identity = 59/179 (32.96%), Postives = 93/179 (51.96%), Query Frame = 1
Query:   49 PKKTVKSGRRAHQPIDEPV--------ENADDIIPEASPQKSSNKQQITKGWGEDSFNQKRVSQSKNSNK---EETILNKDDSDNDREMNIPTIP---EASNEE--PQIAQAPNVMVNRVSTYKELDRDLSEHVAFTVFEDEIDLKILSNCLMLKSEVEEDDEQWEYDHLFAEVTSDLI 537
            PK   KSGRRA    ++          +++     E  P K + +Q    GW E+S        S+   +   +  +  +    +D E +IP IP   E   E+   Q+A  P++ V++V TY++LD DL  + AF   + EIDLK+L+  L  + EV+EDD  W++DHLF EV+S+L+
Sbjct:   13 PKNVAKSGRRARPQANQSSFEDSRHARKSSTSASLEGPPPKPARRQ---GGWAEESSGSGSAKSSRRHTENFEDHRLRPQTPKGSDDEGDIPVIPDLDEVQEEDLTMQVAVPPSIHVSQVMTYRDLDNDLKHYSAFQTLDGEIDLKLLTKVLAPEQEVKEDDVSWDWDHLFTEVSSELL 188          
BLAST of Intraflagellar transport 43 vs. Planmine SMEST
Match: SMESG000067883.1 (SMESG000067883.1)

HSP 1 Score: 357.066 bits (915), Expect = 2.762e-127
Identity = 174/175 (99.43%), Postives = 175/175 (100.00%), Query Frame = 1
Query:   37 MSFRPKKTVKSGRRAHQPIDEPVENADDIIPEASPQKSSNKQQITKGWGEDSFNQKRVSQSKNSNKEETILNKDDSDNDREMNIPTIPEASNEEPQIAQAPNVMVNRVSTYKELDRDLSEHVAFTVFEDEIDLKILSNCLMLKSEVEEDDEQWEYDHLFAEVTSDLIGDFSKQIS 561
            MSFRPKKTVKSGRRAHQPIDEPVENADDIIPEASPQKSSNKQQITKGWGEDSFNQKRVSQSKNSNKEETILNKDDSD+DREMNIPTIPEASNEEPQIAQAPNVMVNRVSTYKELDRDLSEHVAFTVFEDEIDLKILSNCLMLKSEVEEDDEQWEYDHLFAEVTSDLIGDFSKQIS
Sbjct:    1 MSFRPKKTVKSGRRAHQPIDEPVENADDIIPEASPQKSSNKQQITKGWGEDSFNQKRVSQSKNSNKEETILNKDDSDSDREMNIPTIPEASNEEPQIAQAPNVMVNRVSTYKELDRDLSEHVAFTVFEDEIDLKILSNCLMLKSEVEEDDEQWEYDHLFAEVTSDLIGDFSKQIS 175          
BLAST of Intraflagellar transport 43 vs. Planmine SMEST
Match: SMESG000067883.1 (SMESG000067883.1)

HSP 1 Score: 352.443 bits (903), Expect = 1.994e-125
Identity = 174/176 (98.86%), Postives = 175/176 (99.43%), Query Frame = 1
Query:   37 MSFRPKKTVKSGRRAHQPIDEPVENADDIIPEASPQKSSNKQQITKGWGEDSFNQKRVSQSKNSNKEETILNKD-DSDNDREMNIPTIPEASNEEPQIAQAPNVMVNRVSTYKELDRDLSEHVAFTVFEDEIDLKILSNCLMLKSEVEEDDEQWEYDHLFAEVTSDLIGDFSKQIS 561
            MSFRPKKTVKSGRRAHQPIDEPVENADDIIPEASPQKSSNKQQITKGWGEDSFNQKRVSQSKNSNKEETILNKD DSD+DREMNIPTIPEASNEEPQIAQAPNVMVNRVSTYKELDRDLSEHVAFTVFEDEIDLKILSNCLMLKSEVEEDDEQWEYDHLFAEVTSDLIGDFSKQIS
Sbjct:    1 MSFRPKKTVKSGRRAHQPIDEPVENADDIIPEASPQKSSNKQQITKGWGEDSFNQKRVSQSKNSNKEETILNKDADSDSDREMNIPTIPEASNEEPQIAQAPNVMVNRVSTYKELDRDLSEHVAFTVFEDEIDLKILSNCLMLKSEVEEDDEQWEYDHLFAEVTSDLIGDFSKQIS 176          
The following BLAST results are available for this feature:
BLAST of Intraflagellar transport 43 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 3
Match NameE-valueIdentityDescription
IFT438.595e-1835.38intraflagellar transport 43 [Source:HGNC Symbol;Ac... [more]
IFT438.595e-1835.38intraflagellar transport 43 [Source:HGNC Symbol;Ac... [more]
IFT432.770e-1731.87intraflagellar transport 43 [Source:HGNC Symbol;Ac... [more]
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BLAST of Intraflagellar transport 43 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Intraflagellar transport 43 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 1
Match NameE-valueIdentityDescription
IFT435.140e-1129.10gene:FBgn0032446 transcript:FBtr0300273[more]
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BLAST of Intraflagellar transport 43 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Intraflagellar transport 43 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 1
Match NameE-valueIdentityDescription
rgs7bp2.068e-2234.30regulator of G-protein signaling 7 binding protein... [more]
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BLAST of Intraflagellar transport 43 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 3
Match NameE-valueIdentityDescription
Ift435.359e-2035.06intraflagellar transport 43 [Source:MGI Symbol;Acc... [more]
Ift434.241e-1933.73intraflagellar transport 43 [Source:MGI Symbol;Acc... [more]
Ift432.216e-933.33intraflagellar transport 43 [Source:MGI Symbol;Acc... [more]
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BLAST of Intraflagellar transport 43 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|Q28CW2|IFT43_XENTR1.096e-2134.30Intraflagellar transport protein 43 homolog OS=Xen... [more]
sp|Q3B8E9|IFT43_XENLA8.433e-2132.75Intraflagellar transport protein 43 homolog OS=Xen... [more]
sp|B5G1P1|IFT43_TAEGU9.099e-2131.28Intraflagellar transport protein 43 homolog OS=Tae... [more]
sp|E2QSX5|IFT43_CANLF5.359e-2031.03Intraflagellar transport protein 43 homolog OS=Can... [more]
sp|Q2TBN9|IFT43_BOVIN1.175e-1935.20Intraflagellar transport protein 43 homolog OS=Bos... [more]
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BLAST of Intraflagellar transport 43 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A1I8HV324.150e-2536.61Uncharacterized protein OS=Macrostomum lignano OX=... [more]
A0A267DWM39.817e-2534.95Uncharacterized protein OS=Macrostomum lignano OX=... [more]
V3Z7J63.411e-2336.81Uncharacterized protein OS=Lottia gigantea OX=2251... [more]
A0A2D4JYR31.324e-2239.43Uncharacterized protein OS=Micrurus paraensis OX=1... [more]
A0A2D4N7591.324e-2239.43Uncharacterized protein OS=Micrurus spixii OX=1294... [more]
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BLAST of Intraflagellar transport 43 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 3
Match NameE-valueIdentityDescription
IFT433.178e-2136.18intraflagellar transport 43 [Source:NCBI gene;Acc:... [more]
IFT431.052e-1233.33intraflagellar transport 43 [Source:NCBI gene;Acc:... [more]
IFT432.932e-1233.58intraflagellar transport 43 [Source:NCBI gene;Acc:... [more]
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BLAST of Intraflagellar transport 43 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 1
Match NameE-valueIdentityDescription
ENSPMAT00000008891.13.900e-2031.51pep scaffold:Pmarinus_7.0:GL476825:10523:32821:-1 ... [more]
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BLAST of Intraflagellar transport 43 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Intraflagellar transport 43 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 1
Match NameE-valueIdentityDescription
EDO422502.433e-1937.76Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of Intraflagellar transport 43 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 2
Match NameE-valueIdentityDescription
IFT432.480e-2032.58intraflagellar transport 43 [Source:NCBI gene;Acc:... [more]
IFT437.832e-2032.96intraflagellar transport 43 [Source:NCBI gene;Acc:... [more]
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BLAST of Intraflagellar transport 43 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 2
Match NameE-valueIdentityDescription
SMESG000067883.12.762e-12799.43SMESG000067883.1[more]
SMESG000067883.11.994e-12598.86SMESG000067883.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30012622 ID=SMED30012622|Name=Intraflagellar transport 43|organism=Schmidtea mediterranea sexual|type=transcript|length=679bp
GCATAATTCAAATTTTTAGTGTTTATCATAGTTACAATGTCATTTAGACC
TAAAAAAACAGTTAAAAGTGGACGAAGAGCTCATCAACCAATTGATGAGC
CCGTTGAGAATGCTGATGATATTATTCCAGAAGCATCTCCTCAAAAATCA
AGTAACAAGCAACAAATAACAAAAGGTTGGGGAGAAGATTCTTTTAACCA
AAAACGCGTCAGTCAGAGTAAAAATTCGAATAAAGAAGAGACTATTTTGA
ATAAAGATGATTCTGACAATGACAGAGAAATGAACATTCCAACTATTCCG
GAAGCATCGAATGAAGAACCACAAATCGCGCAAGCCCCAAACGTTATGGT
AAACCGGGTATCAACCTACAAGGAATTAGACCGAGATCTCAGTGAACATG
TCGCATTTACCGTGTTTGAGGACGAGATCGATTTGAAAATCTTATCTAAT
TGTTTGATGTTGAAATCTGAAGTTGAAGAGGACGACGAACAGTGGGAATA
TGATCACTTGTTTGCTGAGGTCACGTCGGATTTAATTGGAGATTTTTCAA
AGCAAATTTCATAAATAAACTTTCCAAATTTGTTTGTTATGATTTCTTTA
TTAATTTACAACAAAAAAGTATTTCATTATAAATTTGAATATTTTCTTAA
TCTAGATCGATATTTGGATCAGAGTTCCC
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protein sequence of SMED30012622-orf-1

>SMED30012622-orf-1 ID=SMED30012622-orf-1|Name=SMED30012622-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=176bp
MSFRPKKTVKSGRRAHQPIDEPVENADDIIPEASPQKSSNKQQITKGWGE
DSFNQKRVSQSKNSNKEETILNKDDSDNDREMNIPTIPEASNEEPQIAQA
PNVMVNRVSTYKELDRDLSEHVAFTVFEDEIDLKILSNCLMLKSEVEEDD
EQWEYDHLFAEVTSDLIGDFSKQIS*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: cellular component
TermDefinition
GO:0034451centriolar satellite
GO:0030991intraciliary transport particle A
GO:0005737cytoplasm
GO:0005815microtubule organizing center
GO:0005856cytoskeleton
GO:0005929cilium
GO:0015630microtubule cytoskeleton
GO:0042995cell projection
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000016pharynx
PLANA:0000020protonephridia
PLANA:0000034epidermis
PLANA:0000099neuron
PLANA:0000418head
Vocabulary: INTERPRO
TermDefinition
IPR029302IFT43
Vocabulary: molecular function
TermDefinition
GO:0003674molecular_function
Vocabulary: biological process
TermDefinition
GO:0030030cell projection organization
GO:0035721intraciliary retrograde transport
GO:0060271cilium morphogenesis
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR029302Intraflagellar transport protein 43PFAMPF15305IFT43coord: 54..166
e-value: 3.9E-26
score: 91.8
IPR029302Intraflagellar transport protein 43PANTHERPTHR33724FAMILY NOT NAMEDcoord: 6..167
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 32..60
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 61..82
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..97