Intraflagellar transport 43
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30012622 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 6
Homology
BLAST of Intraflagellar transport 43 vs. Ensembl Human
Match: IFT43 (intraflagellar transport 43 [Source:HGNC Symbol;Acc:HGNC:29669]) HSP 1 Score: 79.7221 bits (195), Expect = 8.595e-18 Identity = 46/130 (35.38%), Postives = 73/130 (56.15%), Query Frame = 1 Query: 175 GWGEDSFNQKRVSQSKNSNKEETILNKDD-SDNDREMNIPTIP--EASNEE---PQIAQAPNVMVNRVSTYKELDRDLSEHVAFTVFEDEIDLKILSNCLMLKSEVEEDDEQWEYDHLFAEVTSDLIGDF 546 GW DS + + + E+ L + +D +IP IP E EE Q+A P++ + RV TY++LD DL ++ A + EIDLK+L+ L + EV EDD W++DHLF EV+S+++ ++ Sbjct: 62 GWAGDSVKASKFRRKASEEIEDFRLRPQSLNGSDYGGDIPIIPDLEEVQEEDFVLQVAAPPSIQIKRVMTYRDLDNDLMKYSAIQTLDGEIDLKLLTKVLAPEHEVREDDVGWDWDHLFTEVSSEVLTEW 191
BLAST of Intraflagellar transport 43 vs. Ensembl Human
Match: IFT43 (intraflagellar transport 43 [Source:HGNC Symbol;Acc:HGNC:29669]) HSP 1 Score: 79.7221 bits (195), Expect = 8.595e-18 Identity = 46/130 (35.38%), Postives = 73/130 (56.15%), Query Frame = 1 Query: 175 GWGEDSFNQKRVSQSKNSNKEETILNKDD-SDNDREMNIPTIP--EASNEE---PQIAQAPNVMVNRVSTYKELDRDLSEHVAFTVFEDEIDLKILSNCLMLKSEVEEDDEQWEYDHLFAEVTSDLIGDF 546 GW DS + + + E+ L + +D +IP IP E EE Q+A P++ + RV TY++LD DL ++ A + EIDLK+L+ L + EV EDD W++DHLF EV+S+++ ++ Sbjct: 62 GWAGDSVKASKFRRKASEEIEDFRLRPQSLNGSDYGGDIPIIPDLEEVQEEDFVLQVAAPPSIQIKRVMTYRDLDNDLMKYSAIQTLDGEIDLKLLTKVLAPEHEVREDDVGWDWDHLFTEVSSEVLTEW 191
BLAST of Intraflagellar transport 43 vs. Ensembl Human
Match: IFT43 (intraflagellar transport 43 [Source:HGNC Symbol;Acc:HGNC:29669]) HSP 1 Score: 78.5666 bits (192), Expect = 2.770e-17 Identity = 58/182 (31.87%), Postives = 88/182 (48.35%), Query Frame = 1 Query: 61 VKSGRRAHQPIDEPVENADD------IIPEASPQKSSNKQQITKGWGEDSFNQKRVSQSKNSNKEETILNKDDSDNDR---------EMNIPTIP--EASNEE---PQIAQAPNVMVNRVSTYKELDRDLSEHVAFTVFEDEIDLKILSNCLMLKSEVEEDDEQWEYDHLFAEVTSDLIGDF 546 K GRRA Q + + + + E S K +Q GW DS + S + K++ LN E +IP IP E EE Q+A P++ + RV TY++LD DL ++ A + EIDLK+L+ L + EV EDD W++DHLF EV+S+++ ++ Sbjct: 20 AKMGRRAQQESAQAENHLNGKNSSLTLTGETSSAKLPRCRQ--GGWAGDSV---KASNGTQTGKQQLDLNACYHKTHHRDLGLASLEEADIPIIPDLEEVQEEDFVLQVAAPPSIQIKRVMTYRDLDNDLMKYSAIQTLDGEIDLKLLTKVLAPEHEVREDDVGWDWDHLFTEVSSEVLTEW 196
BLAST of Intraflagellar transport 43 vs. Ensembl Fly
Match: IFT43 (gene:FBgn0032446 transcript:FBtr0300273) HSP 1 Score: 60.8474 bits (146), Expect = 5.140e-11 Identity = 39/134 (29.10%), Postives = 68/134 (50.75%), Query Frame = 1 Query: 160 QQITKGWGEDSFNQKRVSQSKNSNKEETILNKDDSDNDREMN-IPTIPEASNEEPQI-----AQAPNVMVNRVSTYKELDRDLSEHVAFTVFEDEIDLKILSNCLMLKSEVEEDDEQWEYDHLFAEVTSDLIGD 543 ++I+ GW + K + KNS +E + N + IP IP+ + + +I + P + +R + KE + DL AF+ D DL IL++CL+ + + E D+ W++D LF EVT+++ D Sbjct: 79 RRISGGWADSGL--KGLKSKKNSFDDERFKQTKSATNSIPTDDIPVIPDMDDVKDEIMLNEIVEPPTIGTSRSAVLKEANSDLLSQYAFSAV-DGFDLSILTDCLVPQESLNEKDDLWQWDKLFTEVTAEIHSD 209
BLAST of Intraflagellar transport 43 vs. Ensembl Xenopus
Match: rgs7bp (regulator of G-protein signaling 7 binding protein [Source:Xenbase;Acc:XB-GENE-1001518]) HSP 1 Score: 92.0485 bits (227), Expect = 2.068e-22 Identity = 59/172 (34.30%), Postives = 94/172 (54.65%), Query Frame = 1 Query: 52 KKTVKSGRRAHQPIDEPVENADDIIPEASPQKSSNKQQITKG-WGEDSFNQKRVSQSKNSNKEETILNKDDSD-NDREMNIPTIPEASNEEP-----QIAQAPNVMVNRVSTYKELDRDLSEHVAFTVFEDEIDLKILSNCLMLKSEVEEDDEQWEYDHLFAEVTSDLIGDF 546 + VK GRRA + E AD P + + + +G W +DS + ++ + E++ L + D +D +IP IP+ + + Q+A P+V VNRV TYK+LD DL H AF + +IDLK+L+ L + EV E++ QW++D LF EV+S+LI ++ Sbjct: 14 RSGVKMGRRARASQENQQETAD--ASRNQPGREGPPKPLRQGGWADDSSGPSKSTKRMTEDVEDSRLKQQSLDESDEGEDIPVIPDLEDVQEEDLALQVASPPSVQVNRVLTYKDLDNDLMRHAAFQTLDGDIDLKLLTKVLSPEPEVREENVQWDWDLLFTEVSSELITEW 183
BLAST of Intraflagellar transport 43 vs. Ensembl Mouse
Match: Ift43 (intraflagellar transport 43 [Source:MGI Symbol;Acc:MGI:1923661]) HSP 1 Score: 85.1149 bits (209), Expect = 5.359e-20 Identity = 61/174 (35.06%), Postives = 95/174 (54.60%), Query Frame = 1 Query: 61 VKSGRRAHQPIDEPVENADDI-------IPEASPQKSSNKQQITKGWGEDSFNQKRVSQSKNSNKEETILNKDD---SDNDREMNIPTIPEASNEE--PQIAQAPNVMVNRVSTYKELDRDLSEHVAFTVFEDEIDLKILSNCLMLKSEVEEDDEQWEYDHLFAEVTSDLIGDF 546 K GRRAHQ + EN + EA P K +Q GW +DS ++ + + E+ L + + SD+D IP + + E+ Q+A P++ VNRV TY++LD DL ++ AF + EIDLK+L+ L + EV EDD W++DHL+ EV+S+L+ ++ Sbjct: 20 AKMGRRAHQESTQ-AENYLNSKNSSLTQTGEAPPPKPPRRQ---GGWADDSMKMAKLGKKVSEEMEDHRLRQQNLMGSDDDDIPVIPDLEDVQEEDFVLQVASPPSIQVNRVMTYRDLDNDLMKYSAFQTLDGEIDLKLLTKVLAPEHEVREDDVGWDWDHLYTEVSSELLTEW 189
BLAST of Intraflagellar transport 43 vs. Ensembl Mouse
Match: Ift43 (intraflagellar transport 43 [Source:MGI Symbol;Acc:MGI:1923661]) HSP 1 Score: 82.8037 bits (203), Expect = 4.241e-19 Identity = 57/169 (33.73%), Postives = 91/169 (53.85%), Query Frame = 1 Query: 61 VKSGRRAHQPIDEPVENADDI-------IPEASPQKSSNKQQITKGWGEDSFNQKRVSQSKNSNKEETILNKDDSDNDREMNIPTIPEASNEEPQIAQAPNVMVNRVSTYKELDRDLSEHVAFTVFEDEIDLKILSNCLMLKSEVEEDDEQWEYDHLFAEVTSDLIGDF 546 K GRRAHQ + EN + EA P K +Q GW +DS + + +++ ++ DD D ++ + E + Q+A P++ VNRV TY++LD DL ++ AF + EIDLK+L+ L + EV EDD W++DHL+ EV+S+L+ ++ Sbjct: 20 AKMGRRAHQESTQ-AENYLNSKNSSLTQTGEAPPPKPPRRQ---GGWADDSMKM-----ANHRLRQQNLMGSDDDDIPVIPDLEDVQE-EDFVLQVASPPSIQVNRVMTYRDLDNDLMKYSAFQTLDGEIDLKLLTKVLAPEHEVREDDVGWDWDHLYTEVSSELLTEW 178
BLAST of Intraflagellar transport 43 vs. Ensembl Mouse
Match: Ift43 (intraflagellar transport 43 [Source:MGI Symbol;Acc:MGI:1923661]) HSP 1 Score: 55.0694 bits (131), Expect = 2.216e-9 Identity = 47/141 (33.33%), Postives = 72/141 (51.06%), Query Frame = 1 Query: 70 GRRAHQPIDEPVENADDI-------IPEASPQKSSNKQQITKGWGEDSFNQKRVSQSKNSNKEETILNKDD---SDNDREMNIPTIPEASNEE--PQIAQAPNVMVNRVSTYKELDRDLSEHVAFTVFEDEIDLKILSNCL 456 GRRAHQ + EN + EA P K +Q GW +DS ++ + + E+ L + + SD+D IP + + E+ Q+A P++ VNRV TY++LD DL ++ AF + EIDLK+L+ L Sbjct: 2 GRRAHQESTQ-AENYLNSKNSSLTQTGEAPPPKPPRRQ---GGWADDSMKMAKLGKKVSEEMEDHRLRQQNLMGSDDDDIPVIPDLEDVQEEDFVLQVASPPSIQVNRVMTYRDLDNDLMKYSAFQTLDGEIDLKLLTKVL 138
BLAST of Intraflagellar transport 43 vs. UniProt/SwissProt
Match: sp|Q28CW2|IFT43_XENTR (Intraflagellar transport protein 43 homolog OS=Xenopus tropicalis OX=8364 GN=ift43 PE=2 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 1.096e-21 Identity = 59/172 (34.30%), Postives = 94/172 (54.65%), Query Frame = 1 Query: 52 KKTVKSGRRAHQPIDEPVENADDIIPEASPQKSSNKQQITKG-WGEDSFNQKRVSQSKNSNKEETILNKDDSD-NDREMNIPTIPEASNEEP-----QIAQAPNVMVNRVSTYKELDRDLSEHVAFTVFEDEIDLKILSNCLMLKSEVEEDDEQWEYDHLFAEVTSDLIGDF 546 + VK GRRA + E AD P + + + +G W +DS + ++ + E++ L + D +D +IP IP+ + + Q+A P+V VNRV TYK+LD DL H AF + +IDLK+L+ L + EV E++ QW++D LF EV+S+LI ++ Sbjct: 14 RSGVKMGRRARASQENQQETAD--ASRNQPGREGPPKPLRQGGWADDSSGPSKSTKRMTEDVEDSRLKQQSLDESDEGEDIPVIPDLEDVQEEDLALQVASPPSVQVNRVLTYKDLDNDLMRHAAFQTLDGDIDLKLLTKVLSPEPEVREENVQWDWDLLFTEVSSELITEW 183
BLAST of Intraflagellar transport 43 vs. UniProt/SwissProt
Match: sp|Q3B8E9|IFT43_XENLA (Intraflagellar transport protein 43 homolog OS=Xenopus laevis OX=8355 GN=ift43 PE=2 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 8.433e-21 Identity = 56/171 (32.75%), Postives = 94/171 (54.97%), Query Frame = 1 Query: 52 KKTVKSGRRAHQPIDEPVENADDIIPEASPQKSSNKQQITKGWGEDSFNQKRVSQSKNSNKEETILNKDDSD-NDREMNIPTIPEASNEEP-----QIAQAPNVMVNRVSTYKELDRDLSEHVAFTVFEDEIDLKILSNCLMLKSEVEEDDEQWEYDHLFAEVTSDLIGDF 546 + VK GRRA + E AD + + ++ K GW +DS + ++ + E++ L + D +D +IP IP+ + + Q+A P+V VNRV TY++LD DL H AF + ++DLK+L+ L + EV E++ +W++D LF EV+S+LI ++ Sbjct: 14 RTGVKMGRRARAAQETQQETAD-VSRNQTGREGPPKPLRQGGWADDSSGPSKSTRRMTDDVEDSRLKQQSLDESDEGEDIPVIPDLEDVQEEDLALQVASPPSVQVNRVMTYRDLDNDLMRHAAFQSLDGDVDLKLLTKVLSPEPEVREENVRWDWDLLFTEVSSELITEW 183
BLAST of Intraflagellar transport 43 vs. UniProt/SwissProt
Match: sp|B5G1P1|IFT43_TAEGU (Intraflagellar transport protein 43 homolog OS=Taeniopygia guttata OX=59729 GN=IFT43 PE=2 SV=2) HSP 1 Score: 89.3521 bits (220), Expect = 9.099e-21 Identity = 56/179 (31.28%), Postives = 93/179 (51.96%), Query Frame = 1 Query: 58 TVKSGRRAHQPI---------DEPVENADDIIPEASPQKSSNKQQITKGWGEDSFNQKRVSQSKNSNKEE--TILNKDDSDNDREMNIPTIPEASNEE-----PQIAQAPNVMVNRVSTYKELDRDLSEHVAFTVFEDEIDLKILSNCLMLKSEVEEDDEQWEYDHLFAEVTSDLIGDF 546 +K GRRA Q I + P + ++ P P++ GW +D S K++ + E + + +D +IP IP+ + + Q+A P+V VNRV TY +LD+DL ++ AF + E+DLK+L+ L + E+ EDD W++DHLF EV+S+L+ ++ Sbjct: 19 VLKMGRRARQDIFAGENLSRKNSPSASLGEVPPPKPPRRQG-------GWADDPVLAPTKSGRKHAEEVEDHRLRQQSLEASDDGGDIPVIPDLEDVQDEDLAMQVAAPPSVQVNRVLTYHDLDKDLMKYAAFQTLDGEVDLKLLTKVLAPEHELREDDVSWDWDHLFTEVSSELVTEW 190
BLAST of Intraflagellar transport 43 vs. UniProt/SwissProt
Match: sp|E2QSX5|IFT43_CANLF (Intraflagellar transport protein 43 homolog OS=Canis lupus familiaris OX=9615 GN=IFT43 PE=3 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 5.359e-20 Identity = 54/174 (31.03%), Postives = 92/174 (52.87%), Query Frame = 1 Query: 64 KSGRRAHQPIDE-----PVENADDIIPEASPQKSSNKQQITKGWGEDSFNQKRVSQSKNSNKEET---ILNKDDSDNDREMNIPTIPEASNEEP-----QIAQAPNVMVNRVSTYKELDRDLSEHVAFTVFEDEIDLKILSNCLMLKSEVEEDDEQWEYDHLFAEVTSDLIGDF 546 + GRRA Q + +N+ + E +P ++Q GW +DS + + + EE + + +D +IP IP+ + + Q+A P++ VNRV TY++LD DL ++ AF + EIDLK+L+ L + EV EDD W++D L+ EV+S+L+ ++ Sbjct: 21 RMGRRAQQESAQVENHLSGKNSSILTGEVAPPPKPPRRQ--GGWADDSMKTSKSGRRASEEVEEGSHRLRQQSFGGSDDGGDIPVIPDLEDVQEEDFALQVAAPPSIQVNRVMTYRDLDNDLMKYAAFQTLDGEIDLKLLTKVLAPEHEVREDDVNWDWDRLYTEVSSELLSEW 192
BLAST of Intraflagellar transport 43 vs. UniProt/SwissProt
Match: sp|Q2TBN9|IFT43_BOVIN (Intraflagellar transport protein 43 homolog OS=Bos taurus OX=9913 GN=IFT43 PE=2 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.175e-19 Identity = 63/179 (35.20%), Postives = 94/179 (52.51%), Query Frame = 1 Query: 61 VKSGRRAHQPIDEPVEN-------ADDIIPEASPQKSSNKQQITKGWGEDSF----NQKRVSQSKNSNK-EETILNKDDSDNDREMNIPTIP--EASNEEP---QIAQAPNVMVNRVSTYKELDRDLSEHVAFTVFEDEIDLKILSNCLMLKSEVEEDDEQWEYDHLFAEVTSDLIGDF 546 K GRRA Q + EN + + E P K +Q W E S +Q+R S+ ++ + L++ D D IP IP E EE Q+A P++ VNRV TY++LD DL ++ AF + EIDLK+L+ L + EV EDD W++DHL+ EV+S+L+ ++ Sbjct: 20 AKMGRRAQQESTQ-AENHLSGKNSSLTLTAEVPPPKPPRRQ---GRWAEASVKVSKSQRRASEEIQDHRLRQQSLDRSDDGGD----IPVIPDLEEVQEEDFVLQVAAPPSIQVNRVMTYRDLDNDLMKYSAFQTLDGEIDLKLLTKVLAPEHEVREDDVSWDWDHLYTEVSSELLSEW 190
BLAST of Intraflagellar transport 43 vs. TrEMBL
Match: A0A1I8HV32 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig025147g3 PE=4 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 4.150e-25 Identity = 67/183 (36.61%), Postives = 102/183 (55.74%), Query Frame = 1 Query: 40 SFRPKKTVKSGRRAHQPIDEPVENADDIIPEASPQKSSNKQQITKGWGEDSFNQKRVSQSKNSNKEETILN-----KDDSDNDREMNIPTI----PEAS--NEEPQIAQAPNVMVNRVSTYKELDRDLSEHVAFTVFEDEIDLKILSNCLMLKSEVEEDDEQWEYDHLFAEVTSDLIGDFSKQ 555 S + KK + GRRA++ D D A+P++ GWG++ R + S ++ + + K SD+D IP + P AS NE P++A+AP++ VNRV+TY+ELD DL+ H +F ++EIDLK+L+ CL +++E DE W++D LFAEVT DL+ D Q Sbjct: 9 STKGKKKARMGRRANEEEDSAGGTTADG--GAAPKRRG-------GWGDEP---PRTAGSGGRRADDELGDDKFREKRFSDSDGAAAIPELKEEAPVASSVNEPPEMAKAPSIAVNRVATYRELDFDLNRHASFATLDNEIDLKLLTRCLAADQDLQEPDEYWDWDRLFAEVTGDLLVDTGDQ 179
BLAST of Intraflagellar transport 43 vs. TrEMBL
Match: A0A267DWM3 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig025147g2 PE=4 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 9.817e-25 Identity = 65/186 (34.95%), Postives = 101/186 (54.30%), Query Frame = 1 Query: 40 SFRPKKTVKSGRRAHQPIDEPVENADDIIPEASPQKSSNKQQITKGWGEDSFNQKRVSQSKNSNKEETILN-----KDDSDNDREMNIPTIPE---------ASNEEPQIAQAPNVMVNRVSTYKELDRDLSEHVAFTVFEDEIDLKILSNCLMLKSEVEEDDEQWEYDHLFAEVTSDLIGDFSKQ 555 S + KK + GRRA++ D D A+P++ GWG++ R + S ++ + + K SD+D + IPE + NE P++A+AP++ VNRV+TY+ELD DL+ H +F ++EIDLK+L+ CL +++E DE W++D LFAEVT DL+ D Q Sbjct: 9 STKGKKKARMGRRANEEEDSAGGTTADG--GAAPKRRG-------GWGDEP---PRTAGSGGRRADDELGDDKFREKRFSDSDDDGGAAAIPELKEEAPVASSVNEPPEMAKAPSIAVNRVATYRELDFDLNRHASFATLDNEIDLKLLTRCLAADQDLQEPDEYWDWDRLFAEVTGDLLVDTGDQ 182
BLAST of Intraflagellar transport 43 vs. TrEMBL
Match: V3Z7J6 (Uncharacterized protein OS=Lottia gigantea OX=225164 GN=LOTGIDRAFT_204506 PE=4 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 3.411e-23 Identity = 67/182 (36.81%), Postives = 100/182 (54.95%), Query Frame = 1 Query: 55 KTVKSGRRAHQ-------PIDEPVENADDIIPEASPQK-----SSNKQQITKGWGEDSFNQKR---VSQSKNSNKEETILNKDDSDND-REMNIPTIPEASNEE-----PQIAQAPNVMVNRVSTYKELDRDLSEHVAFTVFEDEIDLKILSNCLMLKSEVEEDDEQWEYDHLFAEVTSDLI 537 + VK GRRA P + E ++IPEAS Q + GWGE+ + R + + + ++E + + D+D E +IP IPE + ++A APNV VNRV+T++ELD DL HVAF ++EIDLK+L+ L + ++ EDD+ W++D LF EVTS+LI Sbjct: 14 RNVKQGRRAKARKESAAPPPELDDEGQGELIPEASNQNLDEGPPGRPSRAVSGWGEEGGRRPRNRQLGEGFETYEDERLRPRSPVDSDGSESDIPIIPELEEQHEEDLSTKVAIAPNVSVNRVATFRELDNDLLRHVAFLTLDNEIDLKLLTKNLSPEEDLIEDDKPWDWDRLFTEVTSELI 195
BLAST of Intraflagellar transport 43 vs. TrEMBL
Match: A0A2D4JYR3 (Uncharacterized protein OS=Micrurus paraensis OX=1970185 PE=4 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 1.324e-22 Identity = 69/175 (39.43%), Postives = 97/175 (55.43%), Query Frame = 1 Query: 52 KKTVKSGRRAHQPIDEPVENADDIIPEASPQKSSNKQQITKG-WGEDSFNQKRVSQSKNSNKEETI----LNKDDSDNDREMNIPTIP--EASNEE---PQIAQAPNVMVNRVSTYKELDRDLSEHVAFTVFEDEIDLKILSNCLMLKSEVEEDDEQWEYDHLFAEVTSDLIGDF 546 K VK GRRAHQ P EN + Q+ S+K I +G W F VS+SK E+ + L + ++ D +IP IP E EE Q+A P+V VNRV TY++LD DL ++ AF + EIDLK+LS L + EV EDD W+++HL+ EV S+L+ ++ Sbjct: 13 KGVVKMGRRAHQDFF-PEENHLSQTNSPAAQRPSSKPHIREGVWS--GFVGVNVSKSKKKPAEQEVEDHRLRQQSTEADNGEDIPVIPDLEEVQEEDFAMQVAAPPSVQVNRVLTYRDLDNDLMKYAAFQTLDGEIDLKLLSKVLAPEQEVREDDVIWDWNHLYTEVASELLSEW 184
BLAST of Intraflagellar transport 43 vs. TrEMBL
Match: A0A2D4N759 (Uncharacterized protein OS=Micrurus spixii OX=129469 PE=4 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 1.324e-22 Identity = 69/175 (39.43%), Postives = 97/175 (55.43%), Query Frame = 1 Query: 52 KKTVKSGRRAHQPIDEPVENADDIIPEASPQKSSNKQQITKG-WGEDSFNQKRVSQSKNSNKEETI----LNKDDSDNDREMNIPTIP--EASNEE---PQIAQAPNVMVNRVSTYKELDRDLSEHVAFTVFEDEIDLKILSNCLMLKSEVEEDDEQWEYDHLFAEVTSDLIGDF 546 K VK GRRAHQ P EN + Q+ S+K I +G W F VS+SK E+ + L + ++ D +IP IP E EE Q+A P+V VNRV TY++LD DL ++ AF + EIDLK+LS L + EV EDD W+++HL+ EV S+L+ ++ Sbjct: 13 KGVVKMGRRAHQDFF-PEENHLSQTNSPAAQRPSSKPHIREGVWS--GFVGVNVSKSKKKPAEQEVEDHRLRQQSTEADNGEDIPVIPDLEEVQEEDFAMQVAAPPSVQVNRVLTYRDLDNDLMKYAAFQTLDGEIDLKLLSKVLAPEQEVREDDVIWDWNHLYTEVASELLSEW 184
BLAST of Intraflagellar transport 43 vs. Ensembl Cavefish
Match: IFT43 (intraflagellar transport 43 [Source:NCBI gene;Acc:103033244]) HSP 1 Score: 87.8113 bits (216), Expect = 3.178e-21 Identity = 55/152 (36.18%), Postives = 80/152 (52.63%), Query Frame = 1 Query: 106 ENADDIIPEASPQKSSNKQQITKGWGEDSFNQKRVSQSKNSNKEET----ILNKDDSDNDREMNIPTIP---EASNEE--PQIAQAPNVMVNRVSTYKELDRDLSEHVAFTVFEDEIDLKILSNCLMLKSEVEEDDEQWEYDHLFAEVTSDL 534 E DD P P K +Q GW E++ + EE + + +D E +IP IP E E+ Q+A P++ VNRV TY++LD DL ++ AF + EIDLK+L+ L + EV E+D W++DHLF EV+S+L Sbjct: 23 EEEDDTGP---PPKPPRRQ---GGWAEETSGTGSAKSGRRQGAEEVEDRRLRPQTPEGSDDESDIPVIPDLDEVQEEDLTMQVAAPPSIQVNRVMTYRDLDNDLMKYSAFQTLDGEIDLKLLTKVLAPEQEVREEDVGWDWDHLFTEVSSEL 168
BLAST of Intraflagellar transport 43 vs. Ensembl Cavefish
Match: IFT43 (intraflagellar transport 43 [Source:NCBI gene;Acc:103033244]) HSP 1 Score: 64.6994 bits (156), Expect = 1.052e-12 Identity = 42/126 (33.33%), Postives = 62/126 (49.21%), Query Frame = 1 Query: 130 EASPQKSSNKQQITKGWGEDSFNQKRVSQSKNSNKEET----ILNKDDSDNDREMNIPTIP---EASNEE--PQIAQAPNVMVNRVSTYKELDRDLSEHVAFTVFEDEIDLKILSNCLMLKSEVEE 480 E P K +Q GW E++ + EE + + +D E +IP IP E E+ Q+A P++ VNRV TY++LD DL ++ AF + EIDLK+L+ L + EV E Sbjct: 23 EGPPPKPPRRQ---GGWAEETSGTGSAKSGRRQGAEEVEDRRLRPQTPEGSDDESDIPVIPDLDEVQEEDLTMQVAAPPSIQVNRVMTYRDLDNDLMKYSAFQTLDGEIDLKLLTKVLAPEQEVRE 145
BLAST of Intraflagellar transport 43 vs. Ensembl Cavefish
Match: IFT43 (intraflagellar transport 43 [Source:NCBI gene;Acc:103033244]) HSP 1 Score: 63.5438 bits (153), Expect = 2.932e-12 Identity = 45/134 (33.58%), Postives = 65/134 (48.51%), Query Frame = 1 Query: 106 ENADDIIPEASPQKSSNKQQITKGWGEDSFNQKRVSQSKNSNKEET----ILNKDDSDNDREMNIPTIP---EASNEE--PQIAQAPNVMVNRVSTYKELDRDLSEHVAFTVFEDEIDLKILSNCLMLKSEVEE 480 E DD P P K +Q GW E++ + EE + + +D E +IP IP E E+ Q+A P++ VNRV TY++LD DL ++ AF + EIDLK+L+ L + EV E Sbjct: 23 EEEDDTGP---PPKPPRRQ---GGWAEETSGTGSAKSGRRQGAEEVEDRRLRPQTPEGSDDESDIPVIPDLDEVQEEDLTMQVAAPPSIQVNRVMTYRDLDNDLMKYSAFQTLDGEIDLKLLTKVLAPEQEVRE 150
BLAST of Intraflagellar transport 43 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000008891.1 (pep scaffold:Pmarinus_7.0:GL476825:10523:32821:-1 gene:ENSPMAG00000008049.1 transcript:ENSPMAT00000008891.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 82.8037 bits (203), Expect = 3.900e-20 Identity = 46/146 (31.51%), Postives = 78/146 (53.42%), Query Frame = 1 Query: 136 SPQKSSNKQQITKGWGEDSFNQKRVSQSKNSNK---EETILNKDDSDNDRE-MNIPTIPEASNEE-----PQIAQAPNVMVNRVSTYKELDRDLSEHVAFTVFEDEIDLKILSNCLMLKSEVEEDDEQWEYDHLFAEVTSDLIGDF 546 SP + GW +DS R + +++ E+T L + + + +IP IP+ + + Q+A P++ VNRV T+K+LD DL H AF + +IDLK+L+ L + E+ EDD W++ L+ EV+S+L ++ Sbjct: 10 SPGPPPKPSRRHGGWAQDSAGSARSGKIRSAGSVDVEDTRLRQASPEPSEDGADIPVIPDLDDMQEDDLTAQVAAPPSMQVNRVMTFKDLDSDLMTHAAFQTLDGDIDLKLLTRVLAPEPEIREDDGPWDWALLYTEVSSELTSEW 155
BLAST of Intraflagellar transport 43 vs. Ensembl Nematostella
Match: EDO42250 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S2A2]) HSP 1 Score: 80.4925 bits (197), Expect = 2.433e-19 Identity = 54/143 (37.76%), Postives = 81/143 (56.64%), Query Frame = 1 Query: 139 PQKSSNKQQITKGWGEDSFNQKRVSQSKNSNKEETILNKDDSDNDREMNIPTIP--EASNEE---PQIAQAPNVMVNRVSTYKELDRDLSEHVAFTVFEDEIDLKILSNCLMLKSEVEEDDEQWEYDHLFAEVTSDLIGDFSK 552 P + S +Q GW +D+ +K+ K E + ++D D + +I IP E EE QIA P+V VNRV+TYKELD +H A + +IDLK+LSN L +SEV E+D+ W+++ LF E+ S+L ++ K Sbjct: 2 PPRPSRRQ---GGWADDTPKEKK--------KGERLRVENDKPKDEDNDILVIPDLEEVQEEDMATQIAAPPSVQVNRVATYKELDSYYQKHSALFSLDGDIDLKLLSNVLSPESEVFEEDKAWDWNRLFTEIASELQTEWDK 133
BLAST of Intraflagellar transport 43 vs. Ensembl Medaka
Match: IFT43 (intraflagellar transport 43 [Source:NCBI gene;Acc:101166174]) HSP 1 Score: 85.8853 bits (211), Expect = 2.480e-20 Identity = 58/178 (32.58%), Postives = 93/178 (52.25%), Query Frame = 1 Query: 49 PKKTVKSGRRAHQPIDEPV--------ENADDIIPEASPQKSSNKQQITKGWGEDSFNQKRVSQSKNSN--KEETILNKDDSDNDREMNIPTIP---EASNEE--PQIAQAPNVMVNRVSTYKELDRDLSEHVAFTVFEDEIDLKILSNCLMLKSEVEEDDEQWEYDHLFAEVTSDLI 537 PK KSGRRA ++ +++ E P K + +Q GW E+S + +++ + + +D E +IP IP E E+ Q+A P++ V++V TY++LD DL + AF + EIDLK+L+ L + EV+EDD W++DHLF EV+S+L+ Sbjct: 13 PKNVAKSGRRARPQANQSSFEDSRHARKSSTSASLEGPPPKPARRQ---GGWAEESSGSAFSNSYAHTSCSYSHRLRPQTPKGSDDEGDIPVIPDLDEVQEEDLTMQVAVPPSIHVSQVMTYRDLDNDLKHYSAFQTLDGEIDLKLLTKVLAPEQEVKEDDVSWDWDHLFTEVSSELL 187
BLAST of Intraflagellar transport 43 vs. Ensembl Medaka
Match: IFT43 (intraflagellar transport 43 [Source:NCBI gene;Acc:101166174]) HSP 1 Score: 84.3445 bits (207), Expect = 7.832e-20 Identity = 59/179 (32.96%), Postives = 93/179 (51.96%), Query Frame = 1 Query: 49 PKKTVKSGRRAHQPIDEPV--------ENADDIIPEASPQKSSNKQQITKGWGEDSFNQKRVSQSKNSNK---EETILNKDDSDNDREMNIPTIP---EASNEE--PQIAQAPNVMVNRVSTYKELDRDLSEHVAFTVFEDEIDLKILSNCLMLKSEVEEDDEQWEYDHLFAEVTSDLI 537 PK KSGRRA ++ +++ E P K + +Q GW E+S S+ + + + + +D E +IP IP E E+ Q+A P++ V++V TY++LD DL + AF + EIDLK+L+ L + EV+EDD W++DHLF EV+S+L+ Sbjct: 13 PKNVAKSGRRARPQANQSSFEDSRHARKSSTSASLEGPPPKPARRQ---GGWAEESSGSGSAKSSRRHTENFEDHRLRPQTPKGSDDEGDIPVIPDLDEVQEEDLTMQVAVPPSIHVSQVMTYRDLDNDLKHYSAFQTLDGEIDLKLLTKVLAPEQEVKEDDVSWDWDHLFTEVSSELL 188
BLAST of Intraflagellar transport 43 vs. Planmine SMEST
Match: SMESG000067883.1 (SMESG000067883.1) HSP 1 Score: 357.066 bits (915), Expect = 2.762e-127 Identity = 174/175 (99.43%), Postives = 175/175 (100.00%), Query Frame = 1 Query: 37 MSFRPKKTVKSGRRAHQPIDEPVENADDIIPEASPQKSSNKQQITKGWGEDSFNQKRVSQSKNSNKEETILNKDDSDNDREMNIPTIPEASNEEPQIAQAPNVMVNRVSTYKELDRDLSEHVAFTVFEDEIDLKILSNCLMLKSEVEEDDEQWEYDHLFAEVTSDLIGDFSKQIS 561 MSFRPKKTVKSGRRAHQPIDEPVENADDIIPEASPQKSSNKQQITKGWGEDSFNQKRVSQSKNSNKEETILNKDDSD+DREMNIPTIPEASNEEPQIAQAPNVMVNRVSTYKELDRDLSEHVAFTVFEDEIDLKILSNCLMLKSEVEEDDEQWEYDHLFAEVTSDLIGDFSKQIS Sbjct: 1 MSFRPKKTVKSGRRAHQPIDEPVENADDIIPEASPQKSSNKQQITKGWGEDSFNQKRVSQSKNSNKEETILNKDDSDSDREMNIPTIPEASNEEPQIAQAPNVMVNRVSTYKELDRDLSEHVAFTVFEDEIDLKILSNCLMLKSEVEEDDEQWEYDHLFAEVTSDLIGDFSKQIS 175
BLAST of Intraflagellar transport 43 vs. Planmine SMEST
Match: SMESG000067883.1 (SMESG000067883.1) HSP 1 Score: 352.443 bits (903), Expect = 1.994e-125 Identity = 174/176 (98.86%), Postives = 175/176 (99.43%), Query Frame = 1 Query: 37 MSFRPKKTVKSGRRAHQPIDEPVENADDIIPEASPQKSSNKQQITKGWGEDSFNQKRVSQSKNSNKEETILNKD-DSDNDREMNIPTIPEASNEEPQIAQAPNVMVNRVSTYKELDRDLSEHVAFTVFEDEIDLKILSNCLMLKSEVEEDDEQWEYDHLFAEVTSDLIGDFSKQIS 561 MSFRPKKTVKSGRRAHQPIDEPVENADDIIPEASPQKSSNKQQITKGWGEDSFNQKRVSQSKNSNKEETILNKD DSD+DREMNIPTIPEASNEEPQIAQAPNVMVNRVSTYKELDRDLSEHVAFTVFEDEIDLKILSNCLMLKSEVEEDDEQWEYDHLFAEVTSDLIGDFSKQIS Sbjct: 1 MSFRPKKTVKSGRRAHQPIDEPVENADDIIPEASPQKSSNKQQITKGWGEDSFNQKRVSQSKNSNKEETILNKDADSDSDREMNIPTIPEASNEEPQIAQAPNVMVNRVSTYKELDRDLSEHVAFTVFEDEIDLKILSNCLMLKSEVEEDDEQWEYDHLFAEVTSDLIGDFSKQIS 176 The following BLAST results are available for this feature:
BLAST of Intraflagellar transport 43 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 3
BLAST of Intraflagellar transport 43 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of Intraflagellar transport 43 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 1
BLAST of Intraflagellar transport 43 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of Intraflagellar transport 43 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 1
BLAST of Intraflagellar transport 43 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 3
BLAST of Intraflagellar transport 43 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of Intraflagellar transport 43 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of Intraflagellar transport 43 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 3
BLAST of Intraflagellar transport 43 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 1
BLAST of Intraflagellar transport 43 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of Intraflagellar transport 43 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 1
BLAST of Intraflagellar transport 43 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 2
BLAST of Intraflagellar transport 43 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 2
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30012622 ID=SMED30012622|Name=Intraflagellar transport 43|organism=Schmidtea mediterranea sexual|type=transcript|length=679bpback to top protein sequence of SMED30012622-orf-1 >SMED30012622-orf-1 ID=SMED30012622-orf-1|Name=SMED30012622-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=176bp MSFRPKKTVKSGRRAHQPIDEPVENADDIIPEASPQKSSNKQQITKGWGEback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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