SMED30012615

Overview
NameSMED30012615
Smed IDSMED30012615
Length (bp)1809
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30012615 (SMED30012615) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30012615 (SMED30012615) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020




SMED30012615

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 2

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
parenchymal cellSMED30012615SMESG000062786.1 dd_Smed_v4_2820_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
whole organism asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30012615SMESG000062786.1 dd_Smed_v6_2820_0dd_Smed_v6PMID:29674432
Plass et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30012615 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.000395:20879..22681 +8908
Homology
BLAST of SMED30012615 vs. Planmine SMEST
Match: SMESG000062786.1 (SMESG000062786.1)

HSP 1 Score: 946.036 bits (2444), Expect = 0.000e+0
Identity = 547/549 (99.64%), Postives = 547/549 (99.64%), Query Frame = 1
Query:   64 MTDDSDCDSNVNVPVNLIYKRQVIIKTIQFVGLIYIVYGIFVAFAGVCINLDKEANGKGQFLRFWDPIIAILSLANLAVFIMTVYYKYWNYKKGYSRLISLPIDHMIVCFILVPLFFFSSXXXXXXXXXXXXXXPCHGYLSFMAPXXXXXXXXXXXXXXXDIGQNVPMTGNWKMNVLKTNVIFFTIIGIANCFVISFSFQHMLIFRNESLNSTYKDKFKPNESCIMEDWTKKYISNTYEKCDKYLRSTVLLFCVCSFAYLIQPMLQREKSVNMIELQVHSLESVDSTVNNISMSQEGDEDDQLLVVVEKNPLISTPQNPSFRLPSAAXXXXXXXXXXXXXXXXXXXXXNNNTHLQLIGGLIFTTFPIFVYALGSGLSIVHINEVERWPIFLERHGKVIEKCLIWIGAAGQLSISMATVAISFESLIVKNGTEIEMARXXXXXXXXXXXVFQTFLQTILISLAIDRKWIRPEINSWAELLCPAVGXXXXXXXXXXXXXXEMNFPIIKHNENSLFIDLFYNGLRSIGGTLSTLQRLHASILFASMIVYTHN 1710
            MTDDSDCDSNV VPVNLIYKRQVIIKTIQFVGLIYIVYGIFVAFAGVCINLDKEANGKGQFLRFWDPIIAILSLANLAVFIMTVYYKYWNYKKGYSRLISLPIDHMIVCFILVPLFFFSSINLIIEVIKEIIIIPCHGYLSFMAPLSFFLIFISAAILIFDIGQNVPMTGNWKMNVLKTNVIFFTIIGIANCFVISFSFQHMLIFRNESLNSTYKDKFKPNESCIMEDWTKK ISNTYEKCDKYLRSTVLLFCVCSFAYLIQPMLQREKSVNMIELQVHSLESVDSTVNNISMSQEGDEDDQLLVVVEKNPLISTPQNPSFRLPSAALVLCIIFLSLSFLSFIIMLSLNNNTHLQLIGGLIFTTFPIFVYALGSGLSIVHINEVERWPIFLERHGKVIEKCLIWIGAAGQLSISMATVAISFESLIVKNGTEIEMARNILLIPNNILIVFQTFLQTILISLAIDRKWIRPEINSWAELLCPAVGMMGLNIGLLLLSISEMNFPIIKHNENSLFIDLFYNGLRSIGGTLSTLQRLHASILFASMIVYTHN
Sbjct:    1 MTDDSDCDSNVTVPVNLIYKRQVIIKTIQFVGLIYIVYGIFVAFAGVCINLDKEANGKGQFLRFWDPIIAILSLANLAVFIMTVYYKYWNYKKGYSRLISLPIDHMIVCFILVPLFFFSSINLIIEVIKEIIIIPCHGYLSFMAPLSFFLIFISAAILIFDIGQNVPMTGNWKMNVLKTNVIFFTIIGIANCFVISFSFQHMLIFRNESLNSTYKDKFKPNESCIMEDWTKKSISNTYEKCDKYLRSTVLLFCVCSFAYLIQPMLQREKSVNMIELQVHSLESVDSTVNNISMSQEGDEDDQLLVVVEKNPLISTPQNPSFRLPSAALVLCIIFLSLSFLSFIIMLSLNNNTHLQLIGGLIFTTFPIFVYALGSGLSIVHINEVERWPIFLERHGKVIEKCLIWIGAAGQLSISMATVAISFESLIVKNGTEIEMARNILLIPNNILIVFQTFLQTILISLAIDRKWIRPEINSWAELLCPAVGMMGLNIGLLLLSISEMNFPIIKHNENSLFIDLFYNGLRSIGGTLSTLQRLHASILFASMIVYTHN 549          
BLAST of SMED30012615 vs. Planmine SMEST
Match: SMESG000040891.1 (SMESG000040891.1)

HSP 1 Score: 164.466 bits (415), Expect = 7.542e-44
Identity = 160/543 (29.47%), Postives = 267/543 (49.17%), Query Frame = 1
Query:  118 YKRQVIIKTIQFVGLIYIVYGIFVAFAGVCINLDKEANGKGQFLRFWDPIIAILSLANLAVFIMTVYYKYWNYKKGYSRL-ISLPIDHMIVCFILVPLFFFSSXXXXXXXXXXXXXXPCHGYLSFMAPXXXXXXXXXXXXXXXDIGQNVPMTGNWKMNVLKTNVIFFTIIGIANCFVISFSFQHMLIFRN-----ESLNSTYKDKFKPNESCIMEDWTKKYISNTYEKCDKYLRSTVLLFCVCSFAYLIQPMLQREKSVNMIELQVHSLESVDSTVNNISMSQEGDEDDQLLVVVEKNPLISTPQNP-SFRLPSAAXXXXXXXXXXXXXXXXXXXXXNNNTHLQLIGGLIFTTFPIFVYALGSGLSIVHINEVERWPIFLERHGKVIEKCLIWIGAAGQLSISMATVAISFESLIVKNGTEIEMARXXXXXXXXXXXVFQTFLQTILISLAIDRKWIRPEINSWAELLCPAVGXXXXXXX-----XXXXXXXEMNFPIIKHNENSLFIDLFYNGLRSIGGTLSTLQRLHASILFASMIVYTHN 1710
            YK ++  K +Q  GL Y V G F  +   C  LDK  +   Q   FW+PI  +  + N   FI+T+        +G  ++     I+  ++ ++L    F ++I   I  I    +      L+ +  +    +FI    LI +I     +    KM +L   V+  + IGI N F+   + Q +  F +     ++ +  Y +  KP E               + +  KY++  V+LFC     YLI+    R  S     L  +S E  + T++ I+     D + + L++ E   + S  +NP SFRLP  +LVL I+ +++S L+  I+ SL  +T L   G  + T FPI +  L   L  + I E+ERWP  ++++  +++  L+WIGA GQ++I+ + + +   + I   G                +++ QT LQT+ ISL++DR+WI PE  SW E +CPAVG++ +NI      + +L    +N  + K+N   LF+ +F NG  S+G TL  LQRLH+S++F  +I+YT+N
Sbjct:    5 YKYEIFEKLLQLTGLFYFVSGFFTTYCWACKELDK-VSPHEQINNFWNPIAVVSGIINCFNFILTII----TISQGKRQVQTERNIEGNLLFYVLCAPLFLATIVFTILEITVFSMKLHENDLTMLMSIGEMFLFIGTFFLILNINFKFWIFLGSKMKLLNRFVMLTSFIGIINYFMFHMTDQQITNFISIASDYDAYSKYYNNSTKPREGPFH-----------FSRIKKYVQPLVILFCCTCMVYLIKFYFSRTSSQK--NLDDNSTELSEETLDKIN-----DSETENLIIRENEVVRSNTKNPPSFRLPPLSLVLGILLITVSLLAVAILNSLLKSTSLYFTGQYLSTIFPIPIDILSLFLLYMQIIEMERWPK-IKKNENIVDSTLVWIGAIGQITIAFSQLELY--TFIRDPGL------VAAKDCYYFVLILQTILQTLTISLSLDREWISPERKSWQEYICPAVGILSINISFLIINVFILMGDVLNEQMAKNNITELFLKMFGNGFSSLGETLGILQRLHSSLIFIKIIIYTNN 515          
BLAST of SMED30012615 vs. Planmine SMEST
Match: SMESG000020517.1 (SMESG000020517.1)

HSP 1 Score: 110.923 bits (276), Expect = 1.704e-25
Identity = 97/321 (30.22%), Postives = 168/321 (52.34%), Query Frame = 1
Query:  781 KCDKYLRSTVLLFCVCSFAYLIQPMLQREKSVNMIELQVHSLESVDSTVNNISMSQEGDEDDQLLVVVEKNPLISTPQN--PSFRLPSAAXXXXXXXXXXXXXXXXXXXXXNNNTHLQLIGGLIFTTFPIFVYALGSGLSIVHINEVERWPIFLERHGK---VIEKCLIWIGAAGQLSISMATVAISFESLIVKNGTEIEMARXXXXXXXXXXXVFQTFLQTILISLAIDRKWIRPEINSWAELLCPAVGXXXXXXXXXXXXXXE------MNFPIIKHNENSLFIDLFYNGLRSIGGTLSTLQRLHASILFASMIVYTHN 1710
            K + +L+  V+LFC    +YLI          N    ++   E +   ++ I++     E+D   ++   NP IS       S  LP  +L L I+F++++F    I  ++ N+      G LI + FPI +Y     L I+ +N++ RW    E+ G    +I++ ++W+GA GQ+   +A +++        N  +     +  +I    ++ FQT  QT++ISLA+DRKW +P++ SW E LCP VGM+ LN+  ++ S+ +      +N   ++ N   LF+ +F NG +S G  L+ LQRLH+S++F  MI + +N
Sbjct:  217 KINSFLQPFVILFCFVILSYLIL-------FYNSAHYEIQETEKL--LIDEINLRTGASEED---IIASSNPTISFSFKVFQSINLPPFSLGLAILFITVTFFIIAIANNMMNSPKFATEGQLISSIFPIPIYLFSIFLLIIQMNDICRW----EKLGTDKYLIDRMILWVGATGQVVEIVAQISM--------NSYQYYPKLSGWIIAEYAILFFQTMFQTLVISLALDRKWSQPKLESWHEYLCPPVGMLSLNLSFMIFSLFDIINTKSLNVFSVELNP-YLFMRIFTNGFQSFGVALAILQRLHSSLIFGKMIFFNNN 512          
BLAST of SMED30012615 vs. Planmine SMEST
Match: SMESG000062787.1 (SMESG000062787.1)

HSP 1 Score: 107.071 bits (266), Expect = 5.251e-24
Identity = 117/337 (34.72%), Postives = 178/337 (52.82%), Query Frame = 1
Query:  544 DIGQNVPMTGNWKMNVLKTNVIFFTIIGIANCFVISFSFQHMLIF-----RNESLNSTYKDKFKPNESCIMEDWTKKYISNTYEKCDKYLRSTVLLFCVCSFAYLIQPMLQREKSVNMIE---LQVHSLESVDSTVNNISMSQEGDEDDQLLVVVEKNPLISTPQNPSFRLPSAAXXXXXXXXXXXXXXXXXXXXXNNNTHLQL-IGGLIFTTFPIFVYALGSGLSIVHINEVERWPIFLERHGKVIEKCLIWIGAAGQLSISMATVAISFESLIVKNGTEIE----MARXXXXXXXXXXXVFQTFLQTILISLAIDRKWIRPEINSWAELLCPAVG 1515
            D  +N+  T N  +N+L    IF T+IG++   + +    H+ +F       E+   T+  K   N S    D    Y+ NT     KYL+ST  LF   SF  L++ +L+    + +I+   +  + L ++  T  ++  S      D L          ST + PSFRL SA+LV CI FLSLSF+ F IM  L    + ++ +  L++     F++ LG  LSIVHI E+ RWPI L   G ++ + ++WIGA G +  S+ ++  S   LI+KN T+      ++ N L I   IL + QT LQ  L++LAI+R+W +P+INSW+E L PAVG
Sbjct:  150 DHDKNLSKT-NRNLNLLNVAAIFLTVIGLSISGIHAVIGHHVDLFLQPCEHRENCTITFSGKMCTNSS----DSQLVYVVNT--TIHKYLQSTSFLFPFYSFVCLLRLLLKNLNGIKIIDDFFIMNNDLLNLSLTEFSLGNSIPSHFRDNL-----NGNGQSTNRIPSFRLSSASLVQCITFLSLSFIGFYIMNGLIKTDNFRINLYNLLYIILKTFIFILGISLSIVHIFEISRWPIELNCQGNLVNRFMMWIGAGGNIFWSILSITSSL--LILKNPTDFNSQFLLSNNCLSIIACILDIIQTILQVTLMNLAIERQWTQPKINSWSEFLSPAVG 472          
BLAST of SMED30012615 vs. Planmine SMEST
Match: SMESG000040908.1 (SMESG000040908.1)

HSP 1 Score: 103.219 bits (256), Expect = 5.623e-23
Identity = 162/540 (30.00%), Postives = 255/540 (47.22%), Query Frame = 1
Query:  118 YKRQVIIKTIQFVGLIYIVYGIFVAFAGVCINLD-KEANGKGQFLRFWDPIIAILSLANLAVFIMTVYYKYWNYKKGYSRLISLPIDHMIVCFIL-VPLFFFSSXXXXXXXXXXXXXXPCHGYLSFMAPXXXXXXXXXXXXXXXDIGQNVPMTGNWKMNVLKTNVIFFTIIGIANCFVISFSFQHMLIFRNESLNSTYKDKFKPNESCIMEDWTKKYISNTYEKCDKYLRSTVLLFCVCSFAYLIQPMLQREKSVNMIELQVHSLESVDSTVNNISMSQEGDEDDQLLVVVEKNPLISTPQ---NPSF----RLPSAAXXXXXXXXXXXXXXXXXXXXXNNNTHLQLIGGLIFTTFPIFVYALGSGLSIVHINEVERWPIFLERHGKVIEKCLIWIGAAGQLSISMATVAISFESLIVKNGTEIEMARXXXXXXXXXXXVFQTFLQTILISLAIDRKWIRPEINSWAELLCPAVGXXXXXXXXXXXXXXEMNFPIIKHN--------ENSLFIDLFYNGLRSIGGTLSTLQRLHASILFA 1686
            YK  ++ K ++F  LIY V G   +++     LD K  N +   L FW+PI AI+ + N+   I+  ++ Y N KK   +     I+  I+ +IL +PL   S   LI+ +I++       G  S          FI+  + I  I  +  +    +M      +   TIIG+ N F      Q +  F + + N++   K        + +     +   ++    Y++  V+LFC     YL+  ++ R                  +  NN S+S E DE  QL+  V     +S      N SF    +LP  +L+L I+ ++ S L  II+ S  N+  L   G +I  TF  F+Y +   L I+ I E++RW    E +  +++K L WIG  GQL IS A +++        N  + E A   LLI    LIV Q  LQ + ++LA+DR+ I P+I +W E +CPAVG++ +N+GLL LS+    F +I  N        E  +FI +F  G +S G TLS LQRLH+ ++F 
Sbjct:    5 YKFDILEKILEFSCLIYFVLGCLTSYSWASKELDYKTLNSR--ILLFWEPIAAIMGIVNVFHIILIGFFIYKNSKKKIMKKSHKEIN--ILFYILSIPLLLVSMSYLILLIIRDFHCQETIGKFSIFLCFGELGFFIATIVFITFINISKLIIPTKQMAQFFRFLKLITIIGMVNYFFFHIVSQQIYNFISVASNTSIYPK--------INNRNIPALPFDFDSLRNYMQPLVILFCCICVIYLV--IIFRL-----------------ANANNPSIS-ENDEYIQLIESVHNQQNLSQTSKNSNKSFMKNLQLPPISLILGILLITSSILIIIIINSFLNDKLLYKSGQIISATFASFIYLISIVLLILQIFEMKRWRK-NEENFNIVDKILTWIGVCGQLMISTAQISL--------NIYKFEPASAFLLIEYFFLIV-QILLQYVTVTLALDRQCIPPKIKTWQEFICPAVGILSINLGLLFLSL----FDVINANSQKSFNSYETDMFIQIFGAGFQSFGETLSILQRLHSLLIFG 498          
The following BLAST results are available for this feature:
BLAST of SMED30012615 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30012615 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30012615 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30012615 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30012615 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30012615 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30012615 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30012615 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30012615 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30012615 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30012615 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30012615 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30012615 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30012615 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000062786.10.000e+099.64SMESG000062786.1[more]
SMESG000040891.17.542e-4429.47SMESG000040891.1[more]
SMESG000020517.11.704e-2530.22SMESG000020517.1[more]
SMESG000062787.15.251e-2434.72SMESG000062787.1[more]
SMESG000040908.15.623e-2330.00SMESG000040908.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30012615 ID=SMED30012615|Name=SMED30012615|organism=Schmidtea mediterranea sexual|type=transcript|length=1809bp
GAGATTTGTATGCAGTTTTATATATATTTGAAAAGGTCTTACAAATTATA
ATATTATTTTAAAATGACTGATGATAGCGATTGTGATTCAAATGTAAACG
TCCCAGTAAACCTGATTTACAAAAGGCAAGTCATCATAAAAACCATTCAA
TTTGTTGGACTGATTTACATTGTTTACGGGATATTTGTGGCGTTCGCCGG
AGTATGCATTAATCTCGACAAAGAAGCCAACGGTAAAGGGCAATTCTTAC
GATTTTGGGATCCAATAATTGCTATTCTTTCTCTTGCAAATCTTGCCGTA
TTTATCATGACAGTATACTACAAATATTGGAATTACAAGAAAGGCTATTC
CAGGTTGATATCGTTGCCCATTGACCATATGATAGTGTGTTTTATTTTGG
TTCCTTTGTTTTTCTTTTCCTCCATCAATCTCATTATCGAAGTCATTAAA
GAAATAATTATCATCCCATGCCACGGCTATTTATCCTTCATGGCGCCTTT
GAGCTTTTTTTTAATTTTCATTAGCGCTGCCATTCTAATATTCGACATTG
GACAAAACGTTCCGATGACGGGCAACTGGAAAATGAATGTATTGAAAACC
AACGTGATATTTTTCACGATAATTGGAATAGCGAATTGTTTCGTTATAAG
CTTTTCCTTCCAACATATGCTTATCTTTAGAAATGAATCCTTAAACAGCA
CCTATAAGGATAAATTTAAACCAAATGAAAGTTGCATTATGGAAGATTGG
ACAAAAAAGTATATCAGCAATACTTACGAGAAATGCGATAAATATTTACG
GTCAACGGTGCTTTTGTTCTGCGTCTGCAGTTTTGCATATTTAATTCAAC
CAATGCTGCAACGTGAAAAGTCAGTAAATATGATAGAACTGCAAGTTCAT
TCATTGGAATCTGTAGATTCAACCGTGAACAATATCTCAATGTCACAGGA
AGGGGATGAAGATGATCAACTCTTAGTTGTTGTTGAAAAGAATCCTTTAA
TTAGCACACCACAGAATCCGTCATTTCGACTTCCGTCAGCTGCATTAGTT
CTGTGTATTATATTTCTCAGTTTGAGTTTTTTGAGTTTTATAATAATGCT
TAGTTTGAATAACAATACACATCTGCAACTCATTGGGGGACTGATTTTCA
CAACATTCCCAATTTTTGTGTACGCCTTAGGATCAGGTCTATCAATTGTA
CACATAAATGAAGTCGAAAGGTGGCCGATTTTCTTAGAAAGGCATGGAAA
GGTAATTGAAAAGTGTCTAATTTGGATTGGAGCAGCAGGGCAGTTGTCAA
TTTCAATGGCCACAGTAGCGATATCCTTTGAATCATTGATAGTGAAAAAT
GGCACGGAGATTGAAATGGCAAGAAATATCCTTTTAATTCCTAACAATAT
TCTAATTGTTTTTCAAACCTTTCTTCAGACGATTTTGATAAGTCTTGCAA
TTGATAGGAAATGGATCCGACCCGAGATCAATTCATGGGCGGAATTGCTA
TGCCCAGCAGTTGGAATGATGGGTCTCAATATTGGCCTATTACTGCTTAG
TATTAGTGAAATGAATTTTCCAATTATTAAGCACAATGAAAACTCTCTTT
TCATTGACTTATTCTACAACGGGCTAAGATCAATAGGTGGCACTTTGAGC
ACCCTTCAAAGGCTTCATGCGTCTATTTTATTTGCCAGTATGATTGTGTA
TACTCATAACTAATTACTAACACACAGAATAATAATATTCTGATTACATT
CAATGATTTAAAAATTATTTTAATTACTTTTAATTAAATTATCAATATTT
AAAAAAAAA
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protein sequence of SMED30012615-orf-1

>SMED30012615-orf-1 ID=SMED30012615-orf-1|Name=SMED30012615-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=550bp
MTDDSDCDSNVNVPVNLIYKRQVIIKTIQFVGLIYIVYGIFVAFAGVCIN
LDKEANGKGQFLRFWDPIIAILSLANLAVFIMTVYYKYWNYKKGYSRLIS
LPIDHMIVCFILVPLFFFSSINLIIEVIKEIIIIPCHGYLSFMAPLSFFL
IFISAAILIFDIGQNVPMTGNWKMNVLKTNVIFFTIIGIANCFVISFSFQ
HMLIFRNESLNSTYKDKFKPNESCIMEDWTKKYISNTYEKCDKYLRSTVL
LFCVCSFAYLIQPMLQREKSVNMIELQVHSLESVDSTVNNISMSQEGDED
DQLLVVVEKNPLISTPQNPSFRLPSAALVLCIIFLSLSFLSFIIMLSLNN
NTHLQLIGGLIFTTFPIFVYALGSGLSIVHINEVERWPIFLERHGKVIEK
CLIWIGAAGQLSISMATVAISFESLIVKNGTEIEMARNILLIPNNILIVF
QTFLQTILISLAIDRKWIRPEINSWAELLCPAVGMMGLNIGLLLLSISEM
NFPIIKHNENSLFIDLFYNGLRSIGGTLSTLQRLHASILFASMIVYTHN*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0003116parenchymal cell
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableTMHMMTMhelixcoord: 27..49
NoneNo IPR availableTMHMMTMhelixcoord: 138..160
NoneNo IPR availableTMHMMTMhelixcoord: 106..128
NoneNo IPR availableTMHMMTMhelixcoord: 440..462
NoneNo IPR availableTMHMMTMhelixcoord: 64..86
NoneNo IPR availableTMHMMTMhelixcoord: 401..420
NoneNo IPR availableTMHMMTMhelixcoord: 181..203
NoneNo IPR availableTMHMMTMhelixcoord: 358..380
NoneNo IPR availableTMHMMTMhelixcoord: 326..348
NoneNo IPR availableTMHMMTMhelixcoord: 244..261
NoneNo IPR availableTMHMMTMhelixcoord: 475..497