SMED30012612

Overview
NameSMED30012612
Smed IDSMED30012612
Length (bp)1517
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30012612 (SMED30012612) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30012612 (SMED30012612) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30012612 (SMED30012612) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30012612 (SMED30012612) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30012612

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 2

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
head regionSMED30012612h1SMcG0018993 SmedASXL_015194SmedAsxl_ww_GCZZ01PMID:27034770
Currie et al., 2016		whole organism asexual adult RNA-sequencing evidence
parenchymal cellSMED30012612h1SMcG0018993 dd_Smed_v4_20831_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30012612 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.003267:8655..10173 -7560
v31.001260:69273..70791 -7479
Homology
[Close]
BLAST of SMED30012612 vs. Planmine SMEST
Match: SMESG000027091.1 (SMESG000027091.1)

HSP 1 Score: 516.153 bits (1328), Expect = 0.000e+0
Identity = 321/326 (98.47%), Postives = 322/326 (98.77%), Query Frame = 3 
Query:    3 MLLRFSKYFDSISPYRLEIYKDAIISMFLFSISVAIIQNYSIYTLRVTPYTVKEIAYWQSILAITTILFIINVMLAFLNSRINYINRNFFQKGPTENPKIVYLICLPLIVIIXXXXXXXXXXXXXXVDCXXXXXXXXXXXXXXXXXXXXXXXXNILSSSNTGELPLVNIVNAFTLLISLASIWNLTVYNSIYMLSADFKITVSSVFNDSAFKNECRIRNVADNKWAXXXXXXXXXXXXXXXXMLGICLTPYFLKPIQSHFSFINKSILKSISCIEEENPSRINYNRYYSVLILFALCFTFYVGQKLYPSTNFYEIELILRLCILVS 980
            MLLRFSKYFDSISPYRLEIYKDAIISMFLFSISVAIIQNYSIYTLRVTPYTVKEIAYWQSILAITTILFIINVMLAFLNSRINYINRNFFQKGPTENPKIVYLICLPLIVIIFSSLSYTTLFLFLYVDCGSVIDIVFSGSIVIFFISMMFVIINILSSSNTGELPLVNIVNAFTLLISLASIWNLTVYNSIYMLSADFK TV  VFNDSAFKNECRIRNV DNKWAINLNSILLSSLNISILMLGICLTPYFLKPIQSHFSFINKSI+KSISCIEEENPSRINYNRYYSVLILFALCFTFYVGQKLYPSTNFYEIELILRLCILVS
Sbjct:    1 MLLRFSKYFDSISPYRLEIYKDAIISMFLFSISVAIIQNYSIYTLRVTPYTVKEIAYWQSILAITTILFIINVMLAFLNSRINYINRNFFQKGPTENPKIVYLICLPLIVIIFSSLSYTTLFLFLYVDCGSVIDIVFSGSIVIFFISMMFVIINILSSSNTGELPLVNIVNAFTLLISLASIWNLTVYNSIYMLSADFKRTVRIVFNDSAFKNECRIRNVTDNKWAINLNSILLSSLNISILMLGICLTPYFLKPIQSHFSFINKSIIKSISCIEEENPSRINYNRYYSVLILFALCFTFYVGQKLYPSTNFYEIELILRLCILVS 326

HSP 2 Score: 262.692 bits (670), Expect = 0.000e+0
Identity = 173/181 (95.58%), Postives = 175/181 (96.69%), Query Frame = 1 
Query:  961 VCAFWCPNLVTIVVMRDLKYVSTVTKKESRETYYIILSIGIIGEFATIIQQLILKINTIFYSTNQSIVTSIXXXXXXXXXXXXXXXQSMLLLVIIKVNSEYETIMTRSNIYILSLILCLYNGFYFIYEISSLNQYYENAIGFNIHLFEVGLLKISIPXXXXXXXXXXXXXXXHFISVLRSK 1503
            +C     NLVTIVVMRDLKYVSTVTKKESRETYYIILSIGIIGEFATIIQQLILKINTIFYSTNQSIVTSILLFGFFGLSLVNGFLQSMLLLVIIKVNSEYETIM RSNIYILSLILCLYNGFYFIYEISSLNQYYENAIGFNIHLFEVGLLKISIPLKLLYRLFSSMLLLKHFIS+LRSK
Sbjct:  321 LCILVSINLVTIVVMRDLKYVSTVTKKESRETYYIILSIGIIGEFATIIQQLILKINTIFYSTNQSIVTSILLFGFFGLSLVNGFLQSMLLLVIIKVNSEYETIMKRSNIYILSLILCLYNGFYFIYEISSLNQYYENAIGFNIHLFEVGLLKISIPLKLLYRLFSSMLLLKHFISILRSK 501
[Close]
BLAST of SMED30012612 vs. Planmine SMEST
Match: SMESG000027096.1 (SMESG000027096.1)

HSP 1 Score: 504.982 bits (1299), Expect = 0.000e+0
Identity = 325/326 (99.69%), Postives = 326/326 (100.00%), Query Frame = 3 
Query:    3 MLLRFSKYFDSISPYRLEIYKDAIISMFLFSISVAIIQNYSIYTLRVTPYTVKEIAYWQSILAITTILFIINVMLAFLNSRINYINRNFFQKGPTENPKIVYLICLPLIVIIXXXXXXXXXXXXXXVDCXXXXXXXXXXXXXXXXXXXXXXXXNILSSSNTGELPLVNIVNAFTLLISLASIWNLTVYNSIYMLSADFKITVSSVFNDSAFKNECRIRNVADNKWAXXXXXXXXXXXXXXXXMLGICLTPYFLKPIQSHFSFINKSILKSISCIEEENPSRINYNRYYSVLILFALCFTFYVGQKLYPSTNFYEIELILRLCILVS 980
            MLLRFSKYFDSISPYRLEIYKDAIISMFLFSISVAIIQNYSIYTLRVTPYTVKEIAYWQSILAITTILFIINVMLAFLNSRINYINRNFFQKGPTENPKIVYLICLPLI+IIFSSLSYTTLFLFLYVDCGSVIDIVFSGSIVIFFISMMFVIINILSSSNTGELPLVNIVNAFTLLISLASIWNLTVYNSIYMLSADFKITVSSVFNDSAFKNECRIRNVADNKWAINLNSILLSSLNISILMLGICLTPYFLKPIQSHFSFINKSILKSISCIEEENPSRINYNRYYSVLILFALCFTFYVGQKLYPSTNFYEIELILRLCILVS
Sbjct:    1 MLLRFSKYFDSISPYRLEIYKDAIISMFLFSISVAIIQNYSIYTLRVTPYTVKEIAYWQSILAITTILFIINVMLAFLNSRINYINRNFFQKGPTENPKIVYLICLPLIIIIFSSLSYTTLFLFLYVDCGSVIDIVFSGSIVIFFISMMFVIINILSSSNTGELPLVNIVNAFTLLISLASIWNLTVYNSIYMLSADFKITVSSVFNDSAFKNECRIRNVADNKWAINLNSILLSSLNISILMLGICLTPYFLKPIQSHFSFINKSILKSISCIEEENPSRINYNRYYSVLILFALCFTFYVGQKLYPSTNFYEIELILRLCILVS 326

HSP 2 Score: 265.388 bits (677), Expect = 0.000e+0
Identity = 175/181 (96.69%), Postives = 176/181 (97.24%), Query Frame = 1 
Query:  961 VCAFWCPNLVTIVVMRDLKYVSTVTKKESRETYYIILSIGIIGEFATIIQQLILKINTIFYSTNQSIVTSIXXXXXXXXXXXXXXXQSMLLLVIIKVNSEYETIMTRSNIYILSLILCLYNGFYFIYEISSLNQYYENAIGFNIHLFEVGLLKISIPXXXXXXXXXXXXXXXHFISVLRSK 1503
            +C     NLVTIVVMRDLKYVSTVTKKESRETYYIILSIGIIGEFATIIQQLILKINTIFYSTNQSIVTSILLFGFFGLSLVNGFLQSMLLLVIIKVNSEYETIMTRSNIYILSLILCLYNGFYFIYEISSLNQYYENAIGFNIHLFEVGLLKISIPLKLLYRLFSSMLLLKHFISVLRSK
Sbjct:  321 LCILVSINLVTIVVMRDLKYVSTVTKKESRETYYIILSIGIIGEFATIIQQLILKINTIFYSTNQSIVTSILLFGFFGLSLVNGFLQSMLLLVIIKVNSEYETIMTRSNIYILSLILCLYNGFYFIYEISSLNQYYENAIGFNIHLFEVGLLKISIPLKLLYRLFSSMLLLKHFISVLRSK 501
[Close]
BLAST of SMED30012612 vs. Planmine SMEST
Match: SMESG000027093.1 (SMESG000027093.1)

HSP 1 Score: 251.521 bits (641), Expect = 2.372e-90
Identity = 168/319 (52.66%), Postives = 231/319 (72.41%), Query Frame = 3 
Query:   18 SKYFDSISPYRLEIYKDAIISMFLFSISVAIIQNYSIYTLRVTPYTVKEIAYWQSILAITTILFIINVMLAFLNSRINYINRNFFQKGPTENPKIVYLICLPLIVIIXXXXXXXXXXXXXXVDCXXXXXXXXXXXXXXXXXXXXXXXXNILSSSNTGELPLVNIVNAFTLLISLASIWNLTVYNSIYMLSADFKITVSSVFNDSAFKNECRIRNVADNKWAXXXXXXXXXXXXXXXXMLGICLTPYFLKPIQSHFSFINKSILKSISCIEEENPSRINYNRYYSVLILFALCFTFYVGQKLYPSTNFYEIELILRLCIL 974
             K  DS S ++  I K +I++ F+F++ V I+ NY+IYTL +TPYT+  I YW++IL I+TILF++NV L   N R+NY+NRNFF KGPTENPKIVYLIC PLI++I SSLSYT  FLF + DCGS IDI+F+GSI++FF SM+F+IIN+LSSS+TGELPLVNI+NAFTL++SLAS+WNLT+YN   +L+  FK TV  VFN++ F N+C  +N+ ++ W ++L+  +L  L IS ++LGICL PY  +P++SH SFINKSI  +    + E  SR NY  YY  +++  L F  ++ +K  PS     I L L  C++
Sbjct:    6 GKSSDSYSFHKYFIIKYSIVTAFMFTVGVGIVWNYTIYTLSLTPYTIIRIEYWKTILFISTILFLLNVGLILTNYRVNYMNRNFFLKGPTENPKIVYLICFPLIILILSSLSYTAAFLFHFNDCGSFIDIIFAGSIILFFTSMIFLIINVLSSSDTGELPLVNIINAFTLMVSLASVWNLTLYNIELVLTNSFKTTVKRVFNEATFFNQCSNKNIPNSPWPVDLDVNMLPLLRISSIILGICLMPYLFRPLKSHISFINKSIPNASHYFDVEFVSRKNYKNYYLSIVMIVLNFAIFIAKKFSPSNIIDTIALFLFFCVM 324

HSP 2 Score: 101.293 bits (251), Expect = 2.372e-90
Identity = 61/141 (43.26%), Postives = 91/141 (64.54%), Query Frame = 1 
Query: 1009 DLKYVSTVTKKESRETYYIILSIGIIGEFATIIQQLILKINTIFYSTNQSIVTSIXXXXXXXXXXXXXXXQSMLLLVIIKVNSEYETIMTRSNIYILSLILCLYNGFYFIYEISSLNQYYENAIGFNIHLFEVGLLKISIP 1431
            D++Y+ T     +  T+YI L IG+IGEF ++I++LIL I  ++Y  N S++ S++     GL L+NGF+QS+LL ++IK  SEYE   + +NIYIL L+LC YNG YFIY +  ++  Y +   FNI     GL +I +P
Sbjct:  337 DMQYIPTTGNGSASVTHYIFLWIGVIGEFVSVIERLILCIYNLYYGPNNSLILSVINLCNVGLLLINGFVQSVLLSIVIKDKSEYEVNKSGTNIYILPLVLCFYNGLYFIYNLFLVDPCYYHCNVFNIAFLTSGLYQICLP 477
[Close]
BLAST of SMED30012612 vs. Planmine SMEST
Match: SMESG000025369.1 (SMESG000025369.1)

HSP 1 Score: 56.6102 bits (135), Expect = 2.824e-8
Identity = 32/84 (38.10%), Postives = 48/84 (57.14%), Query Frame = 3 
Query:   72 IISMFLFSISVAIIQNYSIYTLRVTPYTVKEIAYWQSILAITTILFIINVMLAFLNSRINYINRNFFQKGPTENPKIVYLICLP 323
            +IS+ L   S+  + NYS++ +R TP   + I   + I     I+ + N++L   N+RINY  RN   + P E P I+YLICLP
Sbjct:   51 MISIKLLIFSIVYLTNYSLFIVRFTPLKDRCIGIPKIITCAMVIVKLTNILLIIYNARINYRFRNLRIRNPVERPMILYLICLP 134
[Close]
BLAST of SMED30012612 vs. Planmine SMEST
Match: SMESG000027122.1 (SMESG000027122.1)

HSP 1 Score: 56.225 bits (134), Expect = 3.213e-8
Identity = 52/192 (27.08%), Postives = 101/192 (52.60%), Query Frame = 3 
Query:   54 EIYKDAIISMFLFSISVAIIQNYSIYTLRVTPYTVKEIAYWQSILAITTILFIINVMLAFLNSRINYINRNFFQKGPTENPKIVYLICLPLIVIIXXXXXXXXXXXXXXVDCXXXXXXXXXXXXXXXXXXXXXXXXNILSSSNTGELPLVNIVNAFTLLISLASIWNLTVYNSIYMLSADFKITVSSVFNDS 629
            EI +  I   +LF++S++I+  YS + +  T    +    ++ I     IL ++NV+L   N+++NY  RN       E P + YLICLPL+++I  +L+  T+          +  ++  G     F +++ +I++I   S+TGE P +N VN+ T++++L S+         ++ S +F +   ++F +S
Sbjct:    3 EIVEKLIACAYLFTVSLSILLTYSTFIILNTQVQERCSYCFEFIQWPVNILMMVNVLLIVYNTKMNYKYRNLRFSLQIEQPLVFYLICLPLLLVILVALTLLTINSISRWFATRIGFVIEIGLAATEFFAVIILILDISGFSDTGEEPFINSVNSVTIIVTLISMG--------FLFSKNFILKSRNIFKNS 186
The following BLAST results are available for this feature:
BLAST of SMED30012612 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30012612 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30012612 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30012612 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30012612 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30012612 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30012612 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30012612 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30012612 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30012612 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30012612 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30012612 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30012612 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30012612 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000027091.10.000e+098.47SMESG000027091.1[more]
SMESG000027096.10.000e+099.69SMESG000027096.1[more]
SMESG000027093.12.372e-9052.66SMESG000027093.1[more]
SMESG000025369.12.824e-838.10SMESG000025369.1[more]
SMESG000027122.13.213e-827.08SMESG000027122.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30012612 ID=SMED30012612|Name=SMED30012612|organism=Schmidtea mediterranea sexual|type=transcript|length=1517bp
AAATGCTTCTGAGATTTTCCAAATATTTTGATTCCATTTCTCCATACAGA
TTGGAAATTTATAAAGATGCGATAATTTCCATGTTTTTGTTTTCCATAAG
TGTGGCGATAATTCAAAATTACTCAATTTACACTCTACGAGTCACCCCGT
ATACGGTTAAGGAAATCGCATATTGGCAGTCGATCCTCGCCATCACGACG
ATTCTGTTTATCATCAATGTCATGCTTGCATTTCTAAACTCCCGAATCAA
CTATATCAATCGGAATTTCTTTCAAAAGGGTCCGACTGAAAATCCGAAAA
TCGTATATTTGATTTGTTTACCATTGATAGTTATCATATTCTCCTCATTG
TCATACACAACGCTTTTCCTATTTCTCTATGTCGACTGTGGCAGTGTTAT
TGATATTGTCTTTTCCGGTTCGATTGTTATTTTCTTTATATCGATGATGT
TTGTGATAATCAACATTCTCAGCTCAAGCAATACCGGAGAGTTGCCTTTG
GTAAATATTGTCAACGCATTTACTTTGCTGATATCTTTAGCGTCAATCTG
GAACTTGACTGTCTACAATTCGATTTACATGTTGTCCGCGGATTTTAAGA
TAACCGTCAGCAGCGTTTTCAATGATTCCGCTTTCAAGAACGAATGCCGT
ATCAGGAATGTGGCAGACAACAAATGGGCAATAAATTTAAATTCGATTCT
TCTTTCAAGCCTTAATATCTCGATACTGATGCTGGGAATTTGTCTGACTC
CTTATTTCCTCAAGCCAATACAATCTCATTTTTCTTTCATCAATAAAAGC
ATCCTAAAATCCATTAGTTGTATCGAAGAAGAAAATCCGAGTCGAATAAA
TTATAACAGATATTACTCGGTGTTAATTTTATTTGCTTTGTGTTTCACAT
TTTATGTAGGTCAAAAGTTATATCCTAGCACTAATTTCTATGAAATAGAA
TTGATTCTCCGTTTGTGCATTCTGGTGTCCAAATCTAGTGACGATCGTCG
TGATGAGGGATTTGAAATACGTTTCAACAGTCACTAAAAAGGAAAGCCGT
GAGACATATTATATTATTCTATCCATTGGAATAATAGGAGAATTTGCGAC
AATTATCCAACAATTGATATTGAAAATCAACACTATATTCTATTCGACTA
ATCAATCAATAGTAACATCAATTCTTCTTTTCGGTTTCTTCGGCTTGTCA
TTGGTTAATGGATTTTTGCAATCAATGCTCCTATTGGTTATTATAAAAGT
AAACTCGGAATATGAAACCATTATGACAAGGTCAAATATTTATATTTTAT
CTCTTATTCTCTGCCTCTATAATGGATTTTATTTTATTTACGAAATTTCT
TCTCTCAATCAATACTATGAAAATGCCATCGGATTCAATATTCATTTATT
TGAAGTTGGCTTACTCAAAATTTCGATTCCTTTGAAACTTCTTTATAGGC
TATTTTCATCGATGTTATTGTTGAAACATTTTATATCGGTTTTGCGCTCG
AAATGACTTAATGAATG
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protein sequence of SMED30012612-orf-1

>SMED30012612-orf-1 ID=SMED30012612-orf-1|Name=SMED30012612-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=168bp
MRDLKYVSTVTKKESRETYYIILSIGIIGEFATIIQQLILKINTIFYSTN
QSIVTSILLFGFFGLSLVNGFLQSMLLLVIIKVNSEYETIMTRSNIYILS
LILCLYNGFYFIYEISSLNQYYENAIGFNIHLFEVGLLKISIPLKLLYRL
FSSMLLLKHFISVLRSK*
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protein sequence of SMED30012612-orf-2

>SMED30012612-orf-2 ID=SMED30012612-orf-2|Name=SMED30012612-orf-2|organism=Schmidtea mediterranea sexual|type=polypeptide|length=345bp
MLLRFSKYFDSISPYRLEIYKDAIISMFLFSISVAIIQNYSIYTLRVTPY
TVKEIAYWQSILAITTILFIINVMLAFLNSRINYINRNFFQKGPTENPKI
VYLICLPLIVIIFSSLSYTTLFLFLYVDCGSVIDIVFSGSIVIFFISMMF
VIINILSSSNTGELPLVNIVNAFTLLISLASIWNLTVYNSIYMLSADFKI
TVSSVFNDSAFKNECRIRNVADNKWAINLNSILLSSLNISILMLGICLTP
YFLKPIQSHFSFINKSILKSISCIEEENPSRINYNRYYSVLILFALCFTF
YVGQKLYPSTNFYEIELILRLCILVSKSSDDRRDEGFEIRFNSH*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000418head
PLANA:0003116parenchymal cell
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableTMHMMTMhelixcoord: 57..79
NoneNo IPR availableTMHMMTMhelixcoord: 164..186
NoneNo IPR availableTMHMMTMhelixcoord: 100..122
NoneNo IPR availableTMHMMTMhelixcoord: 287..304
NoneNo IPR availableTMHMMTMhelixcoord: 317..334
NoneNo IPR availableTMHMMTMhelixcoord: 231..253
NoneNo IPR availableTMHMMTMhelixcoord: 23..42
NoneNo IPR availableTMHMMTMhelixcoord: 135..157