SMED30012606
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30012606 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 5
Homology
BLAST of SMED30012606 vs. Planmine SMEST
Match: SMESG000052914.1 (SMESG000052914.1) HSP 1 Score: 1107.43 bits (2863), Expect = 0.000e+0 Identity = 559/640 (87.34%), Postives = 583/640 (91.09%), Query Frame = 1 Query: 28 MNTNLILVTNIPKHIKLFDLIKELENKWARLIFIDNPYACLYDAFIYNPTSLLTHFEMGVSRLRNKVINGAKPLKVYHLWFPPPNVYLTSLVIIFLIMKVTRKSFASYLTC*NIFL*KLNVXXXXXXXXXXXPENATMLPVIFVDNLPKECDSYEIIGDLPFQTNEIKHWDIPQKEDKWMILRLPVNQDEAIRDYVLKYIRTRRLSNGLFPRVLEVFVSEDIRLSKNMVPKTLQILPITTSFKSNLFFLYDLPTKLTVKAISDAAKAIGVKGSKAFFVDVVDSLRVGFLFVPKSFPDSKFDSFQEALKEKEIVVDSNQTVMLNLNEVYLQPKGALPPKVHRKRDDERTIEYVLTNYVYVHNVAACIDHNQLTKGSPINFKVYLFQINENTTQVGFVCLRGLSDVGISQLIDHLRSLVFEGFQVMVDNIYLKCYDMPDNNSERRAVHVPREPLDNVDNITSHVDNTFVDITEINTXXXXXXXXXXXXXXXXXXLAEFSVEISSDPPPEYNLMKSDFIFVNYLPNTVEYSSFSLLPLECDSLTIMSCDEHKIAFLYYPDTTTDKWMGALNKLVTTKIKETNVEVSEVYLQSDENEEMLDKGLDMISPSNYVFVYNIGDCSDTRKLEGNTNIVRFSTMTQESG 1947 MNTNLILVTNIPKHI+ FDLIKELENKWARLIFIDNPYA L +AFIYNPTSLLTHFEMGVSRLR+KVING +PLKVYHLWFPPPNVYLT+L+ PENATMLPV+FVDNLPKECDSYE+IGDLPFQ+N++KHWDIPQKEDKWM+LRLPVNQDEAIRDYVLKYIRTRRLSNGLFPRVLEVFVSEDIRLSKNMVPKTLQILPIT SFKSNL FLYDLPTKLTVK ISDAAKA+GVKGSKAFF+DVVDSLRVGFLFVPKSFPDSKF+ FQEALKEKEIVVDSNQTVMLNLNEVYLQPKGALPPKVH+KRDD+RTIEYVLTNYVYVHNVAA IDHNQL KGS INFK+YLFQI ENTTQVGFVCLRGLSDV ISQLIDHLRSLVFEGFQVMVDNIYLKCYDMPDNNSERR VHVPREPLDNVDNITSHVDNTFVDITE+N EESEVEVID+D+E+D+E+L E SVEISSDPPPEYNLMKSDFIFVNYLPNTVEYSSFSLLPLECDSLTIMSCDEHKIAFLYYPDTTTDKWMGALNKLVTTKIKETNVEVSEVYLQSDENEEMLDKGLDMISPSNYVFVYNIGDCSDTRKLEGNTNIVRFSTMTQESG Sbjct: 1 MNTNLILVTNIPKHIRHFDLIKELENKWARLIFIDNPYADLQEAFIYNPTSLLTHFEMGVSRLRSKVINGIRPLKVYHLWFPPPNVYLTNLI----------------------------------------PENATMLPVLFVDNLPKECDSYEVIGDLPFQSNDVKHWDIPQKEDKWMVLRLPVNQDEAIRDYVLKYIRTRRLSNGLFPRVLEVFVSEDIRLSKNMVPKTLQILPITASFKSNLLFLYDLPTKLTVKGISDAAKALGVKGSKAFFIDVVDSLRVGFLFVPKSFPDSKFEFFQEALKEKEIVVDSNQTVMLNLNEVYLQPKGALPPKVHKKRDDDRTIEYVLTNYVYVHNVAAGIDHNQLAKGSTINFKIYLFQIFENTTQVGFVCLRGLSDVAISQLIDHLRSLVFEGFQVMVDNIYLKCYDMPDNNSERRTVHVPREPLDNVDNITSHVDNTFVDITEVNLEESEVEVIDTDEENDIEMLKECSVEISSDPPPEYNLMKSDFIFVNYLPNTVEYSSFSLLPLECDSLTIMSCDEHKIAFLYYPDTTTDKWMGALNKLVTTKIKETNVEVSEVYLQSDENEEMLDKGLDMISPSNYVFVYNIGDCSDTRKLEGNTNIVRFSTMTQESG 600
BLAST of SMED30012606 vs. Planmine SMEST
Match: SMESG000052914.1 (SMESG000052914.1) HSP 1 Score: 1100.5 bits (2845), Expect = 0.000e+0 Identity = 559/649 (86.13%), Postives = 583/649 (89.83%), Query Frame = 1 Query: 28 MNTNLILVTNIPKHIKLFDLIKELENKWARLIFIDNPYACLYDAFIYNPTSLLTHFEMGVSRLRNKVINGAKPLKVYHLWFPPPNVYLTSLVIIFLIMKVTRKSFASYLTC*NIFL*KLNVXXXXXXXXXXXPENATMLPVIFVDNLPKECDSYEIIGDLPFQTNEIKHWDIPQKEDK---------WMILRLPVNQDEAIRDYVLKYIRTRRLSNGLFPRVLEVFVSEDIRLSKNMVPKTLQILPITTSFKSNLFFLYDLPTKLTVKAISDAAKAIGVKGSKAFFVDVVDSLRVGFLFVPKSFPDSKFDSFQEALKEKEIVVDSNQTVMLNLNEVYLQPKGALPPKVHRKRDDERTIEYVLTNYVYVHNVAACIDHNQLTKGSPINFKVYLFQINENTTQVGFVCLRGLSDVGISQLIDHLRSLVFEGFQVMVDNIYLKCYDMPDNNSERRAVHVPREPLDNVDNITSHVDNTFVDITEINTXXXXXXXXXXXXXXXXXXLAEFSVEISSDPPPEYNLMKSDFIFVNYLPNTVEYSSFSLLPLECDSLTIMSCDEHKIAFLYYPDTTTDKWMGALNKLVTTKIKETNVEVSEVYLQSDENEEMLDKGLDMISPSNYVFVYNIGDCSDTRKLEGNTNIVRFSTMTQESG 1947 MNTNLILVTNIPKHI+ FDLIKELENKWARLIFIDNPYA L +AFIYNPTSLLTHFEMGVSRLR+KVING +PLKVYHLWFPPPNVYLT+L+ PENATMLPV+FVDNLPKECDSYE+IGDLPFQ+N++KHWDIPQKEDK WM+LRLPVNQDEAIRDYVLKYIRTRRLSNGLFPRVLEVFVSEDIRLSKNMVPKTLQILPIT SFKSNL FLYDLPTKLTVK ISDAAKA+GVKGSKAFF+DVVDSLRVGFLFVPKSFPDSKF+ FQEALKEKEIVVDSNQTVMLNLNEVYLQPKGALPPKVH+KRDD+RTIEYVLTNYVYVHNVAA IDHNQL KGS INFK+YLFQI ENTTQVGFVCLRGLSDV ISQLIDHLRSLVFEGFQVMVDNIYLKCYDMPDNNSERR VHVPREPLDNVDNITSHVDNTFVDITE+N EESEVEVID+D+E+D+E+L E SVEISSDPPPEYNLMKSDFIFVNYLPNTVEYSSFSLLPLECDSLTIMSCDEHKIAFLYYPDTTTDKWMGALNKLVTTKIKETNVEVSEVYLQSDENEEMLDKGLDMISPSNYVFVYNIGDCSDTRKLEGNTNIVRFSTMTQESG Sbjct: 1 MNTNLILVTNIPKHIRHFDLIKELENKWARLIFIDNPYADLQEAFIYNPTSLLTHFEMGVSRLRSKVINGIRPLKVYHLWFPPPNVYLTNLI----------------------------------------PENATMLPVLFVDNLPKECDSYEVIGDLPFQSNDVKHWDIPQKEDKYAIFNMLVKWMVLRLPVNQDEAIRDYVLKYIRTRRLSNGLFPRVLEVFVSEDIRLSKNMVPKTLQILPITASFKSNLLFLYDLPTKLTVKGISDAAKALGVKGSKAFFIDVVDSLRVGFLFVPKSFPDSKFEFFQEALKEKEIVVDSNQTVMLNLNEVYLQPKGALPPKVHKKRDDDRTIEYVLTNYVYVHNVAAGIDHNQLAKGSTINFKIYLFQIFENTTQVGFVCLRGLSDVAISQLIDHLRSLVFEGFQVMVDNIYLKCYDMPDNNSERRTVHVPREPLDNVDNITSHVDNTFVDITEVNLEESEVEVIDTDEENDIEMLKECSVEISSDPPPEYNLMKSDFIFVNYLPNTVEYSSFSLLPLECDSLTIMSCDEHKIAFLYYPDTTTDKWMGALNKLVTTKIKETNVEVSEVYLQSDENEEMLDKGLDMISPSNYVFVYNIGDCSDTRKLEGNTNIVRFSTMTQESG 609
BLAST of SMED30012606 vs. Planmine SMEST
Match: SMESG000054602.1 (SMESG000054602.1) HSP 1 Score: 1051.97 bits (2719), Expect = 0.000e+0 Identity = 540/583 (92.62%), Postives = 542/583 (92.97%), Query Frame = 1 Query: 199 MGVSRLRNKVINGAKPLKVYHLWFPPPNVYLTSLVIIFLIMKVTRKSFASYLTC*NIFL*KLNVXXXXXXXXXXXPENATMLPVIFVDNLPKECDSYEIIGDLPFQTNEIKHWDIPQKEDKWMILRLPVNQDEAIRDYVLKYIRTRRLSNGLFPRVLEVFVSEDIRLSKNMVPKTLQILPITTSFKSNLFFLYDLPTKLTVKAISDAAKAIGVKGSKAFFVDVVDSLRVGFLFVPKSFPDSKFDSFQEALKEKEIVVDSNQTVMLNLNEVYLQPKGALPPKVHRKRDDERTIEYVLTNYVYVHNVAACIDHNQLTKGSPINFKVYLFQINENTTQVGFVCLRGLSDVGISQLIDHLRSLVFEGFQVMVDNIYLKCYDMPDNNSERRAVHVPREPLDNVDNITSHVDNTFVDITEINTXXXXXXXXXXXXXXXXXXLAEFSVEISSDPPPEYNLMKSDFIFVNYLPNTVEYSSFSLLPLECDSLTIMSCDEHKIAFLYYPDTTTDKWMGALNKLVTTKIKETNVEVSEVYLQSDENEEMLDKGLDMISPSNYVFVYNIGDCSDTRKLEGNTNIVRFSTMTQESG 1947 MGVSRLRNKVINGAKPLKVYHLWFPPPNVYLTSL+ PENATMLPVIFVDNLPKECDSYEIIGDLPFQTNEIKHWDIPQKEDKWMILRLPVNQDEAIRDYVLKYIRTRRLSNGLFPRVLEVFVSEDIRLSKNMVPKTLQILPITTSFKSNLFFLYDLPTKLTVKAISDAAKA+GVKGSKAFFVDVVDSLRVGFLFVPKSFPDSKFDSFQEALKEKEIVVDSNQTVMLNLNEVYLQPKGALPPKVHRKRDDERTIEY LTNYVYVHNVAACIDHNQLTKGSPINFKVYLFQINENTTQVGFVCLRGLSDVGISQLIDHLRSLVFEGFQVMVDNIYLKCYDMPDNNSERRAVHVPREPLDNVDNITSHVDNTFVDITEINTEESEVEVIDSDDEDDVEILAEFSVEISSDPPPEYNLMKSDFIFVNYLPNTVEYSSFSLLPLECDSLTIMSCDEHKIAFLYYPDTTTDKWMGALNKLVTTKIKETNVEVSEVYLQSDENEEMLDKGLDMISPSNYVFVYNIGDCSDTRKLEGNTNIVRFSTMTQESG Sbjct: 1 MGVSRLRNKVINGAKPLKVYHLWFPPPNVYLTSLI----------------------------------------PENATMLPVIFVDNLPKECDSYEIIGDLPFQTNEIKHWDIPQKEDKWMILRLPVNQDEAIRDYVLKYIRTRRLSNGLFPRVLEVFVSEDIRLSKNMVPKTLQILPITTSFKSNLFFLYDLPTKLTVKAISDAAKALGVKGSKAFFVDVVDSLRVGFLFVPKSFPDSKFDSFQEALKEKEIVVDSNQTVMLNLNEVYLQPKGALPPKVHRKRDDERTIEYALTNYVYVHNVAACIDHNQLTKGSPINFKVYLFQINENTTQVGFVCLRGLSDVGISQLIDHLRSLVFEGFQVMVDNIYLKCYDMPDNNSERRAVHVPREPLDNVDNITSHVDNTFVDITEINTEESEVEVIDSDDEDDVEILAEFSVEISSDPPPEYNLMKSDFIFVNYLPNTVEYSSFSLLPLECDSLTIMSCDEHKIAFLYYPDTTTDKWMGALNKLVTTKIKETNVEVSEVYLQSDENEEMLDKGLDMISPSNYVFVYNIGDCSDTRKLEGNTNIVRFSTMTQESG 543
BLAST of SMED30012606 vs. Planmine SMEST
Match: SMESG000054635.1 (SMESG000054635.1) HSP 1 Score: 1013.45 bits (2619), Expect = 0.000e+0 Identity = 523/640 (81.72%), Postives = 546/640 (85.31%), Query Frame = 1 Query: 28 MNTNLILVTNIPKHIKLFDLIKELENKWARLIFIDNPYACLYDAFIYNPTSLLTHFEMGVSRLRNKVINGAKPLKVYHLWFPPPNVYLTSLVIIFLIMKVTRKSFASYLTC*NIFL*KLNVXXXXXXXXXXXPENATMLPVIFVDNLPKECDSYEIIGDLPFQTNEIKHWDIPQKEDKWMILRLPVNQDEAIRDYVLKYIRTRRLSNGLFPRVLEVFVSEDIRLSKNMVPKTLQILPITTSFKSNLFFLYDLPTKLTVKAISDAAKAIGVKGSKAFFVDVVDSLRVGFLFVPKSFPDSKFDSFQEALKEKEIVVDSNQTVMLNLNEVYLQPKGALPPKVHRKRDDERTIEYVLTNYVYVHNVAACIDHNQLTKGSPINFKVYLFQINENTTQVGFVCLRGLSDVGISQLIDHLRSLVFEGFQVMVDNIYLKCYDMPDNNSERRAVHVPREPLDNVDNITSHVDNTFVDITEINTXXXXXXXXXXXXXXXXXXLAEFSVEISSDPPPEYNLMKSDFIFVNYLPNTVEYSSFSLLPLECDSLTIMSCDEHKIAFLYYPDTTTDKWMGALNKLVTTKIKETNVEVSEVYLQSDENEEMLDKGLDMISPSNYVFVYNIGDCSDTRKLEGNTNIVRFSTMTQESG 1947 MNTNLILVTNIPKHI+ FDLIKELENKWARLIFIDNPYA L +AFIYNPTSLLTHFEMGVSRLR+KVING +PLKVYHLWFPPPNVYLT+L+ PENATMLPV+FVDNLPKECDSYE+IGDLPFQ+N++KHWDIPQKEDKWM+LRLPVNQDEAIRDYVLKYIRTRRLSNGLFPRVLEVFVSEDIRLSKNMVPKTLQILPIT SFKSNL FLYDLPTKLTVK ISDAAKA+GVKGSKAFF+DVVDSLRVGFLFVPKSFPDSKF+ FQEALKEKEIVVDSNQTVMLNLNEVYLQPKGALPPKVH+KRDDERTIEYVLTNYVYVHNVAA IDH+QL KGS INFK+YLFQI ENTTQVGFVCLRGLSD RR VHVPREPLDNVDNITSHVDNTFVDITE+N EESEVEVIDSD+E+D+E+L E SVEISSDPPPEYNLMKSDFIFVNYLPNTVEYSSFSLLPLECDSLTIMSCDEHKIAFLYYPDTTTDKWMGALNKLVTTKIKETNVEVSEVYLQSDENEEMLDKGLDMISPSNYVFVYNIGDCSDTRKLEGNTNIVRFSTMTQESG Sbjct: 1 MNTNLILVTNIPKHIRHFDLIKELENKWARLIFIDNPYADLQEAFIYNPTSLLTHFEMGVSRLRSKVINGIRPLKVYHLWFPPPNVYLTNLI----------------------------------------PENATMLPVLFVDNLPKECDSYEVIGDLPFQSNDVKHWDIPQKEDKWMVLRLPVNQDEAIRDYVLKYIRTRRLSNGLFPRVLEVFVSEDIRLSKNMVPKTLQILPITASFKSNLLFLYDLPTKLTVKGISDAAKALGVKGSKAFFIDVVDSLRVGFLFVPKSFPDSKFEFFQEALKEKEIVVDSNQTVMLNLNEVYLQPKGALPPKVHKKRDDERTIEYVLTNYVYVHNVAAGIDHSQLAKGSTINFKIYLFQIFENTTQVGFVCLRGLSD------------------------------------DSRRTVHVPREPLDNVDNITSHVDNTFVDITEVNLEESEVEVIDSDEENDIEMLKECSVEISSDPPPEYNLMKSDFIFVNYLPNTVEYSSFSLLPLECDSLTIMSCDEHKIAFLYYPDTTTDKWMGALNKLVTTKIKETNVEVSEVYLQSDENEEMLDKGLDMISPSNYVFVYNIGDCSDTRKLEGNTNIVRFSTMTQESG 564
BLAST of SMED30012606 vs. Planmine SMEST
Match: SMESG000054635.1 (SMESG000054635.1) HSP 1 Score: 1006.13 bits (2600), Expect = 0.000e+0 Identity = 525/649 (80.89%), Postives = 549/649 (84.59%), Query Frame = 1 Query: 28 MNTNLILVTNIPKHIKLFDLIKELENKWARLIFIDNPYACLYDAFIYNPTSLLTHFEMGVSRLRNKVINGAKPLKVYHLWFPPPNVYLTSLVIIFLIMKVTRKSFASYLTC*NIFL*KLNVXXXXXXXXXXXPENATMLPVIFVDNLPKECDSYEIIGDLPFQTNEIKHWDIPQKEDK---------WMILRLPVNQDEAIRDYVLKYIRTRRLSNGLFPRVLEVFVSEDIRLSKNMVPKTLQILPITTSFKSNLFFLYDLPTKLTVKAISDAAKAIGVKGSKAFFVDVVDSLRVGFLFVPKSFPDSKFDSFQEALKEKEIVVDSNQTVMLNLNEVYLQPKGALPPKVHRKRDDERTIEYVLTNYVYVHNVAACIDHNQLTKGSPINFKVYLFQINENTTQVGFVCLRGLSDVGISQLIDHLRSLVFEGFQVMVDNIYLKCYDMPDNNSERRAVHVPREPLDNVDNITSHVDNTFVDITEINTXXXXXXXXXXXXXXXXXXLAEFSVEISSDPPPEYNLMKSDFIFVNYLPNTVEYSSFSLLPLECDSLTIMSCDEHKIAFLYYPDTTTDKWMGALNKLVTTKIKETNVEVSEVYLQSDENEEMLDKGLDMISPSNYVFVYNIGDCSDTRKLEGNTNIVRFSTMTQESG 1947 MNTNLILVTNIPKHI+ FDLIKELENKWARLIFIDNPYA L +AFIYNPTSLLTHFEMGVSRLR+KVING +PLKVYHLWFPPPNVYLT+L+ PENATMLPV+FVDNLPKECDSYE+IGDLPFQ+N++KHWDIPQKEDK WM+LRLPVNQDEAIRDYVLKYIRTRRLSNGLFPRVLEVFVSEDIRLSKNMVPKTLQILPIT SFKSNL FLYDLPTKLTVK ISDAAKA+GVKGSKAFF+DVVDSLRVGFLFVPKSFPDSKF+ FQEALKEKEIVVDSNQTVMLNLNEVYLQPKGALPPKVH+KRDDERTIEYVLTNYVYVHNVAA IDH+QL KGS INFK+YLFQI ENTTQVGFVCLRGLSD +LK RR VHVPREPLDNVDNITSHVDNTFVDITE+N EESEVEVIDSD+E+D+E+L E SVEISSDPPPEYNLMKSDFIFVNYLPNTVEYSSFSLLPLECDSLTIMSCDEHKIAFLYYPDTTTDKWMGALNKLVTTKIKETNVEVSEVYLQSDENEEMLDKGLDMISPSNYVFVYNIGDCSDTRKLEGNTNIVRFSTMTQESG Sbjct: 1 MNTNLILVTNIPKHIRHFDLIKELENKWARLIFIDNPYADLQEAFIYNPTSLLTHFEMGVSRLRSKVINGIRPLKVYHLWFPPPNVYLTNLI----------------------------------------PENATMLPVLFVDNLPKECDSYEVIGDLPFQSNDVKHWDIPQKEDKYAIFNMLVKWMVLRLPVNQDEAIRDYVLKYIRTRRLSNGLFPRVLEVFVSEDIRLSKNMVPKTLQILPITASFKSNLLFLYDLPTKLTVKGISDAAKALGVKGSKAFFIDVVDSLRVGFLFVPKSFPDSKFEFFQEALKEKEIVVDSNQTVMLNLNEVYLQPKGALPPKVHKKRDDERTIEYVLTNYVYVHNVAAGIDHSQLAKGSTINFKIYLFQIFENTTQVGFVCLRGLSD-------------------------FLK--------DSRRTVHVPREPLDNVDNITSHVDNTFVDITEVNLEESEVEVIDSDEENDIEMLKECSVEISSDPPPEYNLMKSDFIFVNYLPNTVEYSSFSLLPLECDSLTIMSCDEHKIAFLYYPDTTTDKWMGALNKLVTTKIKETNVEVSEVYLQSDENEEMLDKGLDMISPSNYVFVYNIGDCSDTRKLEGNTNIVRFSTMTQESG 576 The following BLAST results are available for this feature:
BLAST of SMED30012606 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of SMED30012606 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of SMED30012606 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of SMED30012606 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of SMED30012606 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of SMED30012606 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of SMED30012606 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 0
BLAST of SMED30012606 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 0
BLAST of SMED30012606 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 0
BLAST of SMED30012606 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of SMED30012606 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of SMED30012606 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of SMED30012606 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of SMED30012606 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30012606 ID=SMED30012606|Name=SMED30012606|organism=Schmidtea mediterranea sexual|type=transcript|length=2709bpback to top protein sequence of SMED30012606-orf-1 >SMED30012606-orf-1 ID=SMED30012606-orf-1|Name=SMED30012606-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=112bp MNTNLILVTNIPKHIKLFDLIKELENKWARLIFIDNPYACLYDAFIYNPTback to top protein sequence of SMED30012606-orf-2 >SMED30012606-orf-2 ID=SMED30012606-orf-2|Name=SMED30012606-orf-2|organism=Schmidtea mediterranea sexual|type=polypeptide|length=552bp MLPVIFVDNLPKECDSYEIIGDLPFQTNEIKHWDIPQKEDKWMILRLPVNback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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