SMED30012578
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny AppSub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30012578 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 27
Alignments
SMED30012578 aligns in the following genomic locations:
Homology
BLAST of SMED30012578 vs. Planmine SMEST
Match: SMESG000064314.1 (SMESG000064314.1) HSP 1 Score: 357.451 bits (916), Expect = 4.305e-113 Identity = 209/287 (72.82%), Postives = 222/287 (77.35%), Query Frame = 1 Query: 1 HYIIEIDQGENNVADPVYVDEGSNVYGKDDSSDLNE-------------------------------ETDHSADQIEREPAESNINEADE-EEITQEKFNLEDLSKVYEKDDSGDSNESEPSESYINEVDEGEPKQQEQFNPEEVLKVNKKDNSDDPNQSELVESHIIEIDQGENNIADHVNVDEVSKVEETDHTGNLNESEPYESNIKEVDEGEPKQQEQVNPEEVSKVNEKGDSGDTYESEIVEPNIKNVYEGETDISEEPNVNELSKIDEIDRSVYPNESKLAE 765 HYIIEIDQ +NN+ DPV ++E S V K S+DLNE E D+S D E E A+ NI E D+ E + N++++SKV EK S DS ESEPSE INEVDEGEPKQQEQFNPEEVLKVNKKDNSDDPNQSELVESHIIEIDQGENNIADHVNVDEVSKVEETDHTGNLNESEPYESNIKEVDEGEPKQQEQVNPEEVSKVNEKGDSGDT ESEIVEPNIKNVYEGETDISEEPNVNELSKIDEIDRSVY NESKLAE Sbjct: 2959 HYIIEIDQSKNNITDPVNLNEISKVDEKGHSADLNENEPSEYNINEVDEGEPKQQEQVNPEGVSKVNEKDNSYDPNECELAQHNITEIDQGENNIADSVNVDEVSKVDEKYHSADSKESEPSEDNINEVDEGEPKQQEQFNPEEVLKVNKKDNSDDPNQSELVESHIIEIDQGENNIADHVNVDEVSKVEETDHTGNLNESEPYESNIKEVDEGEPKQQEQVNPEEVSKVNEKGDSGDTNESEIVEPNIKNVYEGETDISEEPNVNELSKIDEIDRSVYTNESKLAE 3245 HSP 2 Score: 350.903 bits (899), Expect = 8.119e-111 Identity = 198/255 (77.65%), Postives = 217/255 (85.10%), Query Frame = 1 Query: 1 HYIIEIDQGENNVADPVYVDEGSNVYGKDDSSDLNEETDHSADQIEREPAESNINEADEEEITQEKFNLEDLSKVYEKDDSGDSNESEPSESYINEVDEGEPKQQEQFNPEEVLKVNKKDNSDDPNQSELVESHIIEIDQGENNIADHVNVDEVSKVEETDHTGNLNESEPYESNIKEVDEGEPKQQEQVNPEEVSKVNEKGDSGDTYESEIVEPNIKNVYEGETDISEEPNVNELSKIDEIDRSVYPNESKLAE 765 HYIIEIDQGENNVADPVYVDEGSN YGKDDS DLNEETDHSADQIEREPAESNINEA EEEITQEKFNLEDLSKVYEKDDSGDSNESEPSESYINEVDEGEPKQQEQ NPEEV KVN+KDNS DPN+S L E +I+EIDQG+NNI D VN++E+SKV+E DH+ +LNE+EP ESNI EVDEGEPKQQEQVNPE VSKVNEK +S D E E E NI N + GE +E+ N+ E SKI E D S PN+S+LAE Sbjct: 3246 HYIIEIDQGENNVADPVYVDEGSNFYGKDDSGDLNEETDHSADQIEREPAESNINEAGEEEITQEKFNLEDLSKVYEKDDSGDSNESEPSESYINEVDEGEPKQQEQVNPEEVSKVNEKDNSYDPNESGLAEYYIVEIDQGKNNITDPVNLNEISKVDEEDHSADLNENEPSESNINEVDEGEPKQQEQVNPEGVSKVNEKDNSNDPSEIEPAESNI-NEFGGEM-TNEKFNLVEASKIFEKDDSFDPNKSELAE 3498 HSP 3 Score: 224.172 bits (570), Expect = 1.101e-66 Identity = 160/292 (54.79%), Postives = 184/292 (63.01%), Query Frame = 1 Query: 7 IIEIDQGENNVADPVYVDEGSNVYGKDDSSDLNEETDHSADQIEREPAESNINEADEEEITQEKFNLEDLSKVYEKDDSGDSNESEPSESYINEVDEGEPKQQEQFNPEEVLKVNKKDNSDDPNQSELVESHIIEIDQGENNIADHVNVDEVSKVEETDHTGNLNESEPYESNIKEVDEGEPKQQEQVNPEEVSKVN---------------------------------------EKGDSGDTYESEIVEPNIKNVYEGETDISEEPNVNELSKIDEIDRSVYPNESKLAE 765 I EI QGE N++D V VD+ S KDD E+DHS D + EP +S INE E EIT +K NL+++ KV E +DS D NE E ES I V+EG+ E+ N E +++ D S DPN+SEL E +IIEIDQ E NI+D VNVDEVSKVEETD T NLNESEPYESNIKEVD GEPKQ+EQVN EEVSKVN E DS D E EIV+PNIK + EGET+ISEE NVNELSKIDEIDRSVYPNESKLAE Sbjct: 2678 INEIGQGEKNISDKVNVDQVS----KDD------ESDHSVDPNKSEPGKSYINEI-EGEITHKKINLDEVPKVDENNDSVDPNEIEIVESNIENVEEGKTNLSEESNINESSTIDEPDLSVDPNKSELSEHYIIEIDQVEKNISDPVNVDEVSKVEETDRTANLNESEPYESNIKEVDVGEPKQKEQVNLEEVSKVNENDYSRDPNGSEPDDSNINELGGKMTHEKFNLEEVSKARENDDSVDPNEREIVQPNIKCLDEGETNISEESNVNELSKIDEIDRSVYPNESKLAE 2958 HSP 4 Score: 199.904 bits (507), Expect = 3.297e-58 Identity = 134/248 (54.03%), Postives = 171/248 (68.95%), Query Frame = 1 Query: 16 IDQGENNVADPVYVDEGSNVYGKDDSSDLNEETDHSADQIEREPAESNINEADEEE--ITQEKFNLEDLSKVYEKDDSGDSNESEPSESYINEVDEGEPKQQEQFNPEEVLKVNKKDNSDDPNQSELVESHIIEIDQGENNIADHVNVDEVSKVEETDHTGNLNESEPYESNIKEVDEGEPKQQEQVNPEEVSKVNEKGDSGDTYESEIVEPNIKNVYEGETDISEEPNVNELSKIDEIDRSVYPNES 753 +D+GE N+++ V+E S + +E D S E + AE I E D+ + IT + NL ++SKV EK S D NE+EPSE INEVDEGEPKQQEQ NPE V KVN+KDNS DPN+ EL + +I EIDQGENNIAD VNVDEVSKV+E H+ + ESEP E NI EVDEGEPKQQEQ NPEEV KVN+K +S D +SE+VE +I + +GE +I++ NV+E+SK++E D + NES Sbjct: 2923 LDEGETNISEESNVNELSKI----------DEIDRSVYPNESKLAEHYIIEIDQSKNNIT-DPVNLNEISKVDEKGHSADLNENEPSEYNINEVDEGEPKQQEQVNPEGVSKVNEKDNSYDPNECELAQHNITEIDQGENNIADSVNVDEVSKVDEKYHSADSKESEPSEDNINEVDEGEPKQQEQFNPEEVLKVNKKDNSDDPNQSELVESHIIEIDQGENNIADHVNVDEVSKVEETDHTGNLNES 3159 HSP 5 Score: 195.667 bits (496), Expect = 9.451e-57 Identity = 131/272 (48.16%), Postives = 171/272 (62.87%), Query Frame = 1 Query: 1 HYIIEIDQGENNVADPVYVDEGSNVYGKDDSSDLNE-------------------------------ETDHSADQIEREPAESNINEADEEEITQEKFNLEDLSKVYEKDDSGDSNESEPSESYINEVDEGEPKQQEQFNPEEVLKVNKKDNSDDPNQSELVESHIIEIDQGENNIADHVNVDEVSKVEETDHTGNLNESEPYESNIKEVDEGEPKQQEQVNPEEVSKVNEKGDSGDTYESEIVEPNIKNVYEGETDISEEPNVNELSKIDE 723 HYIIEIDQ E N++DPV VDE S V D +++LNE E D+S D EP +SNINE + +T EKFNLE++SK E DDS D NE E + I +DEGE E+ N E+ K+++ D S PN+S+L E +IIEIDQ +NNI D VN++E+SKV+E H+ +LNE+EP E NI EVDEGEPKQQEQVNPE VSKVNEK +S D E E+ + NI + +GE +I++ NV+E+SK+DE Sbjct: 2797 HYIIEIDQVEKNISDPVNVDEVSKVEETDRTANLNESEPYESNIKEVDVGEPKQKEQVNLEEVSKVNENDYSRDPNGSEPDDSNINELGGK-MTHEKFNLEEVSKARENDDSVDPNEREIVQPNIKCLDEGETNISEESNVNELSKIDEIDRSVYPNESKLAEHYIIEIDQSKNNITDPVNLNEISKVDEKGHSADLNENEPSEYNINEVDEGEPKQQEQVNPEGVSKVNEKDNSYDPNECELAQHNITEIDQGENNIADSVNVDEVSKVDE 3067 HSP 6 Score: 177.178 bits (448), Expect = 3.046e-50 Identity = 141/318 (44.34%), Postives = 181/318 (56.92%), Query Frame = 1 Query: 1 HYIIEIDQGENNVADPVYVDEGSNVYGKDDSSDLNE-------------------------------ETDHSADQIEREPAESNINEADEEEITQEKFNLEDLSKVYEKDDSGDSNESEPSESYINEVDEGEPKQQEQ-FNPEEVLKVNKKDNSDDPNQSELVESHIIEIDQGENNIA-------------------------------DHVNVDEVSKVEETDHTGNLNESEPYESNIKEVDEGEPKQQEQVNPEEVSKVNEKGDSGDTYESEIVEPNIKNVYEGETDISEEPNVNELSKIDEIDRSVYPNESKLAE 765 +YI+EIDQG+NN+ DPV ++E S V +D S+DLNE E D+S D E EPAESNINE E +T EKFNL + SK++EKDDS D N+SE +E IN VDE EPKQQ+Q FN EE KV++KDNSDDPN++ELVE HI I +GE NI+ D VN +VS V+ETDH + NESEP ESN EVDE E +E+ SKV+EK +S D Y++E+VEP IKN GE +IS E + +L K+D+ + SV + K+ E Sbjct: 3378 YYIVEIDQGKNNITDPVNLNEISKVDEEDHSADLNENEPSESNINEVDEGEPKQQEQVNPEGVSKVNEKDNSNDPSEIEPAESNINEFGGE-MTNEKFNLVEASKIFEKDDSFDPNKSELAELNINGVDEEEPKQQQQNFNFEEASKVHEKDNSDDPNENELVEPHIKNIVEGEKNISEESNVKELTKVFGKQHSFDQIEGNSEERNITDDVNYKDVSHVDETDHADDSNESEPAESNFNEVDEEEGNSEEE------SKVDEKDNSDDPYKNELVEPLIKNFNVGEKNISGESCLKDLLKVDKTEHSVNQMKCKIEE 3688 HSP 7 Score: 170.244 bits (430), Expect = 7.094e-48 Identity = 153/388 (39.43%), Postives = 185/388 (47.68%), Query Frame = 1 Query: 1 HYIIEIDQGENNVADPVYVDEGSNVYGKDDSSDLNEETDHSADQIEREPAESNINEADE-EEITQEKFN-----------------------------------------LEDLSKVYEKDDSGDSNESEPSESYINEVDEGEPKQQEQFNPEEVLKVNKKDNSDDPNQSELV-----------------------------------------ESHIIEIDQGENNIADHVNVDEVSKV----------EETDHTGNLNESEPYESN----------------------------------------IKEVDEGEPKQQEQVNPEEVSKVNEKGDSGDTYESEIVEPNIKNVYEGETDISEEPNVNELSKIDEIDRSVYPNESKLAE 765 H I EIDQGENN+AD V VDE S V +E HSAD E EP+E NINE DE E QE+FN ++++SKV E D +G+ NESEP ES I EVDEGEPKQQEQ NPEEV KVN+K +S D N+SE+V E +IIEIDQGENN+AD V VDE S EETDH+ + E EP ESN I EVDEGEPKQQEQVNPEEVSKVNEK +S D ES + E I + +G+ +I++ N+NE+SK+DE D S NE++ +E Sbjct: 3041 HNITEIDQGENNIADSVNVDEVSKV----------DEKYHSADSKESEPSEDNINEVDEGEPKQQEQFNPEEVLKVNKKDNSDDPNQSELVESHIIEIDQGENNIADHVNVDEVSKVEETDHTGNLNESEPYESNIKEVDEGEPKQQEQVNPEEVSKVNEKGDSGDTNESEIVEPNIKNVYEGETDISEEPNVNELSKIDEIDRSVYTNESKLAEHYIIEIDQGENNVADPVYVDEGSNFYGKDDSGDLNEETDHSADQIEREPAESNINEAGEEEITQEKFNLEDLSKVYEKDDSGDSNESEPSESYINEVDEGEPKQQEQVNPEEVSKVNEKDNSYDPNESGLAEYYIVEIDQGKNNITDPVNLNEISKVDEEDHSADLNENEPSE 3418 HSP 8 Score: 168.318 bits (425), Expect = 3.310e-47 Identity = 130/293 (44.37%), Postives = 168/293 (57.34%), Query Frame = 1 Query: 7 IIEIDQGENNVADPVYVDEGSNVYGKDDSSDLNEETDHSADQIEREPAESNINEADEEEITQEKFNLEDLSKVYEKD----------------------------------------DSGDSNESEPSESYINEVDEGEPKQQEQFNPEEVLKVNKKDNSDDPNQSELVESHIIEIDQGENNIADHVNVDEVSKVEETDHTGNLNESEPYESNIKEVDEGEPKQQEQVNPEEVSKVNEKGDSGDTYESEIVEPNIKNVYEGETDISEEPNVNELSKIDEIDRSVYPNESKLAE 765 IIE+D GE N+++ ++E SNV+ D S DLNE EP ESNIN+ DEEE TQE+ E++SKV EKD S D+NES+P ES I EVD+GE QQEQ N EEV V+K +S D N+SEL +II+ID+GE NI D VNV + +TDH+ + N+ + E NI EVD GEPKQQEQVN +EVSKV+ K S DT ESE+ EPN+ + E E +ISE+ NV EL ++E D S N+ +LA+ Sbjct: 1831 IIEVDVGERNISEQDNLEEVSNVFETDPSVDLNE----------NEPTESNINKVDEEETTQEQLISEEVSKVGEKDVSVDPNESDFVEHNIKKVDEDEKKQHKQINLDVSKLDETDHSVDTNESKPVESNIIEVDDGEWTQQEQVNSEEVSNVDKTYHSVDQNESELANQNIIKIDKGEKNILDQVNV-----LYKTDHSVDPNKIKLAEFNINEVDNGEPKQQEQVNSDEVSKVDVKDKSVDTNESELCEPNVIEIDEVEKNISEKSNVKELLNVNETDHSDDQNDGELAK 2108 HSP 9 Score: 163.696 bits (413), Expect = 1.283e-45 Identity = 124/256 (48.44%), Postives = 161/256 (62.89%), Query Frame = 1 Query: 1 HYIIEIDQGENNVADPVYVDEGSNVYGKDDSSDLNEETDHSADQIEREPAESNINEADEEEITQEK-FNLEDLSKVYEKDDSGDSNESEPSESYINEVDEGEPKQQEQFNPEEVLKVNKKDNSDDPNQSELVESHIIEIDQGENNIADHVNVDEVSKVEETDHTGNLNESEPYESNIKEVDEGEPKQQEQVNPEEVSKVNEKGDSGDTYESEIVEPNIKNVYEGETDISEEPNVNELSKIDEIDRSVYPNESKLAE 765 IIEID+ E N+ D V V + ETDHSA+ + EP+ES INE DE + Q+K +L+ +SKV +KD S + NESE +ES I+EVDE E KQ EQ N EEV V+ D+S +PN+ EL E +IIE+D + NI++ VN+DEVSKV+E D + NESE ESNI +VDEGE KQQEQVN EEVS V E +S E+ + EP K V E + N E SK+DE D S++PN+S+ AE Sbjct: 2109 QIIIEIDEVEKNILDQVNVVD---------------ETDHSANSNKSEPSESKINEVDEADWKQQKKVDLDGVSKVDKKDRSINLNESELAESNISEVDERETKQLEQVNSEEVSNVDITDHSGEPNEHELAEQNIIEVDVDKRNISEKVNLDEVSKVDEIDQFVDPNESESAESNINDVDEGETKQQEQVNFEEVSNVFELENSVILNENTLTEPIKKEVDNVENIQNVHANSEEESKVDETDHSIFPNQSEPAE 2349 HSP 10 Score: 144.436 bits (363), Expect = 5.864e-39 Identity = 122/254 (48.03%), Postives = 157/254 (61.81%), Query Frame = 1 Query: 7 IIEIDQGENNVADPVYVDEGSNVYGKDDSSDLNEETDHSADQIEREPAESNINEAD-EEEITQEKFNLEDLSKVYEKDDSGDSNESEPSESYINEVDEGEPKQQEQFNPEEVLKVNKKDNSDDPNQSELVESHIIEIDQGENNIADHVNVDEVSKVEETDHTGNLNESEPYESNIKEVDEGEPKQQEQVNPEEVSKVNEKGDSGDTYESEIVEPNIKNVYEGETDISEEPNVNELSKIDEIDRSVYPNESKLAE 765 I E+D+GE + V +E SNV D+ TDHS + E E AE NI D ++ EK NL+++SKV E D D NESE +ES IN+VDEGE KQQEQ N EEV V + +NS N++ L ES E+D EN H N +E SKV+ETDH+ N+SEP ESNI +VDE E KQQ+QVN E+V +V EK +S D E ++PN+KNV E E +I EE NV LS +DE + S +S+LAE Sbjct: 1462 ISEVDEGETKQLEQVNSEEVSNV-------DI---TDHSGEPNEHELAEQNIIGVDVDKRNISEKVNLDEVSKVDEIDQFVDPNESESAESNINDVDEGETKQQEQVNFEEVSNVYELENSVILNENTLTESIKKEVDNVENIQNVHANSEEESKVDETDHSIFPNQSEPAESNINKVDEEETKQQDQVNSEKVIEVVEKYNSDDPNYGEFIDPNMKNVDEEEKNIIEESNVKSLSNVDEKEHSTDQIKSELAE 1705 HSP 11 Score: 141.739 bits (356), Expect = 5.710e-38 Identity = 110/243 (45.27%), Postives = 151/243 (62.14%), Query Frame = 1 Query: 28 ENNVADPVY-----VDEGSNVYGKDDSSDLNEETDHSADQIEREPAESNINEADEEEITQ-EKFNLEDLSKVYEKDDSGDSNESEPSESYINEVDEGEPKQQEQFNPEEVLKVNKKDNSDDPNQSELVESHIIEIDQGENNIADHVNVDEVSKVEETDHTGNLNESEPYESNIKEVDEGEPKQQEQVNPEEVSKVNEKGDSGDTYESEIVEPNIKNVYEGETDISEEPNVNELSKIDEIDRSV 738 EN + +P+ V+ NV+ + +ETDHS + EPAESNIN+ DEEE Q E+ N +++ V KD S + +ESE E E+ E + E+ N +E+LKV + ++S D N+ EL E +IIEID+ E NI+D VNVDE+SKV+E DH+ + NESE SNI EV++ E KQQE VN +E+S+V EK +S + + E VEPNIKNV E E +I EE + LS ID SV Sbjct: 2303 ENTLTEPIKKEVDNVENIQNVHANSEEESKVDETDHSIFPNQSEPAESNINKVDEEETKQQEQVNSDEVINVDVKDKSVNPDESELGEPNCIEIVEVDKNISEESNVKELLKVTETNHSVDQNEGELDEQNIIEIDKSEKNISDQVNVDELSKVDEIDHSADPNESESANSNINEVNKKETKQQELVNSKELSEVYEKDNSYNPNKKEFVEPNIKNVDEVEKNIIEESYLKALSMIDGTKHSV 2545 HSP 12 Score: 140.584 bits (353), Expect = 1.491e-37 Identity = 111/219 (50.68%), Postives = 139/219 (63.47%), Query Frame = 1 Query: 112 TDHSADQIEREPAESNINEAD-EEEITQEKFNLEDLSKVYEKDDSGDSNESEPSESYINEVDEGEPKQQEQFNPEEVLKVNKKDNSDDPNQSELVESHIIEIDQGENNIADHVNVDEVSKVEETDHTGNLNESEPYESNIKEVDEGEPKQQEQVNPEEVSKVNEKGDSGDTYESEIVEPNIKNVYEGETDISEEPNVNELSKIDEIDRSVYPNESKLAE 765 TDHS + E E AE NI E D ++ EK NL+++SKV E D D NESE +ES IN+VDEGE KQQEQ N EEV V + +NS N++ L E E+D EN H N +E SKV+ETDH+ N+SEP ESNI +VDE E KQQEQVN +EV V+ K S + ESE+ EPN + E + +ISEE NV EL K+ E + SV NE +L E Sbjct: 2213 TDHSGEPNEHELAEQNIIEVDVDKRNISEKVNLDEVSKVDEIDQFVDPNESESAESNINDVDEGETKQQEQVNFEEVSNVFELENSVILNENTLTEPIKKEVDNVENIQNVHANSEEESKVDETDHSIFPNQSEPAESNINKVDEEETKQQEQVNSDEVINVDVKDKSVNPDESELGEPNCIEIVEVDKNISEESNVKELLKVTETNHSVDQNEGELDE 2431 HSP 13 Score: 140.198 bits (352), Expect = 2.028e-37 Identity = 119/289 (41.18%), Postives = 160/289 (55.36%), Query Frame = 1 Query: 7 IIEIDQGENNVADPVYVDEGSNVYGKDDSSDLNEETDHSADQIEREPAESNINEADEEEITQEKFNLEDLSKVYEKDDSGDSNESEPSESYINEVDEGEPKQQEQFNPEEVLKVNKKDNSDDPNQSELVESHIIEIDQGENNIADHVNV------------------------------------DEVSKVEETDHTGNLNESEPYESNIKEVDEGEPKQQEQVNPEEVSKVNEKGDSGDTYESEIVEPNIKNVYEGETDISEEPNVNELSKIDEIDRSVYPNESKLAE 765 IIE+D GE + V +E SNV ++T HS DQ E E A NI + D+ EK L+ ++ +Y+ D S D N+ + +E INEVD GEPKQQEQ N +EV KV+ KD S D N+SEL E ++IEID+ E NI++ NV D+V+ V+ETDH+ N N+SEP ES I EVDE + KQQ++V+ + VSKV++K S + ESE+ E NI V E ET E+ N E+S +D D S PNE +LAE Sbjct: 1952 IIEVDDGEWTQQEQVNSEEVSNV----------DKTYHSVDQNESELANQNIIKIDK----GEKNILDQVNVLYKTDHSVDPNKIKLAEFNINEVDNGEPKQQEQVNSDEVSKVDVKDKSVDTNESELCEPNVIEIDEVEKNISEKSNVKELLNVNETDHSDDQNDGELAKQIIIEIDEVEKNILDQVNVVDETDHSANSNKSEPSESKINEVDEADWKQQKKVDLDGVSKVDKKDRSINLNESELAESNISEVDERETKQLEQVNSEEVSNVDITDHSGEPNEHELAE 2226 HSP 14 Score: 139.813 bits (351), Expect = 2.578e-37 Identity = 110/218 (50.46%), Postives = 143/218 (65.60%), Query Frame = 1 Query: 115 DHSADQIEREPAESNINEADEEEITQEKFNL-EDLSKVYEKDDSGDSNESEPSESYINEVDEGEPKQQEQFNPEEVLKVNKKDNSDDPNQSELVESHIIEIDQGENNIADHVNVDEVSKVEETDHTGNLNESEPYESNIKEVDEGEPKQQEQVNPEEVSKVNEKGDSGDTYESEIVEPNIKNVYEGETDISEEPNVNELSKIDEIDRSVYPNESKLAE 765 DHS + E+ E E D+ E TQ + E+ SK+ EK S D NESEP+ES INEVD+ E KQQ++ + EEV V+K D+S D N+S+L E +IIE+D GE NI++ N++EVS V ETD + +LNE+EP ESNI +VDE E QEQ+ EEVSKV EK S D ES+ VE NIK V E E ++ N+ ++SK+DE D SV NESK E Sbjct: 1734 DHSVNLNEKTLTEPITKEIDKNEQTQTDHVISEEKSKLDEKYYSADPNESEPAESNINEVDKAERKQQKKIDLEEVSNVDKTDHSADSNESKLAEQNIIEVDVGERNISEQDNLEEVSNVFETDPSVDLNENEPTESNINKVDE-EETTQEQLISEEVSKVGEKDVSVDPNESDFVEHNIKKVDEDEKKQHKQINL-DVSKLDETDHSVDTNESKPVE 1949 HSP 15 Score: 137.117 bits (344), Expect = 2.579e-36 Identity = 104/219 (47.49%), Postives = 143/219 (65.30%), Query Frame = 1 Query: 109 ETDHSADQIEREPAESNINEADEEEITQEKFNLEDLSKVYEKDDSGDSNESEPSESYINEVDEGEPKQQEQFNPEEVLKVNKKDNSDDPNQSELVESHIIEIDQGENNIADHVNVDEVSKVEETDHTGNLNESEPYESNIKEVDEGEPKQQEQVNPEEVSKVNEKGDSGDTYESEIVEPNIKNVYEGETDISEEPNVNELSKIDEIDRSVYPNESKLAE 765 + D+S D E E+ IN+ DEE I Q++ NLE++ KV E ++ + N SE ++ I +V+E E K+QEQ N EEV V+++D S D N+ L E + E+ EN VN +E SK++ETDH+ +LNESE ESNI EVDEGE KQ EQVN EEVS V+ SG+ E E+ E NI V + +ISE+ N++E+SK+DEID+ V PNES+ AE Sbjct: 1324 QKDNSVDPYESAHIEAKINKIDEETIKQKQVNLEEVPKVDETEEFINPNRSELADHNIIKVEE-ETKKQEQINLEEVTNVDERDYSVDQNEITLTEPIMKEVYNVENIQIQRVNSEENSKLDETDHSVDLNESELAESNISEVDEGETKQLEQVNSEEVSNVDITDHSGEPNEHELAEQNIIGVDVDKRNISEKVNLDEVSKVDEIDQFVDPNESESAE 1541 HSP 16 Score: 135.961 bits (341), Expect = 6.058e-36 Identity = 107/220 (48.64%), Postives = 138/220 (62.73%), Query Frame = 1 Query: 109 ETDHSADQIEREPAESNINEA-DEEEITQEKFNLEDLSKVYEKDDSGDSNESEPSESYINEVDEGEPKQQEQFNPEEVLKVNKKDNSDDPNQSELVESHIIEIDQGENNIADHVNVDEVSKVEETDHTGNLNESEPYESNIKEVDEGEPKQQEQVNPEEVSKVNEKGDSGDTYESEIVEPNIKNVYEGETDISEEPNVNELSKIDEIDRSVYPNESKLAE 765 E D+S DQ E E + E + E I ++ N E+ SK+ E D S D NESE +ES I+EVDEGE KQ EQ N EEV V+ D+S +PN+ EL E +II +D + NI++ VN+DEVSKV+E D + NESE ESNI +VDEGE KQQEQVN EEVS V E +S E+ + E K V E + N E SK+DE D S++PN+S+ AE Sbjct: 1404 ERDYSVDQNEITLTEPIMKEVYNVENIQIQRVNSEENSKLDETDHSVDLNESELAESNISEVDEGETKQLEQVNSEEVSNVDITDHSGEPNEHELAEQNIIGVDVDKRNISEKVNLDEVSKVDEIDQFVDPNESESAESNINDVDEGETKQQEQVNFEEVSNVYELENSVILNENTLTESIKKEVDNVENIQNVHANSEEESKVDETDHSIFPNQSEPAE 1623 HSP 17 Score: 111.309 bits (277), Expect = 1.696e-27 Identity = 115/336 (34.23%), Postives = 155/336 (46.13%), Query Frame = 1 Query: 7 IIEIDQGENNVADPVYVDEGSNVYGKDDSSDLNEETDHSADQIEREPAESNINEADEEEITQ-EKFNLEDLSKVYE-----------------------------------------KDDSGDSNESEPSESYINEVDEGEPKQQEQFNPEEVLKVNKKDNSDDPN-----------------------------------------QSELVESHIIEIDQGENNIADHVNVDEVSKVEETDHTGNLNESEPYESNIKEVDEGEPKQQEQVNPEEVSKVNEKGDSGDTYESEIVEPNIKNVYEGETDISEEPNVNELSKIDEIDRSVYPNESKLAE 765 II +D + N+++ V +DE S V +E D D E E AESNIN+ DE E Q E+ N E++S VYE D S N+SEP+ES IN+VDE E KQQ+Q N E+V++V +K NSDDPN +SEL E +I +D+ E NI N+ E SKV++ DH+ NLNE E KE+D+ E Q + V EE SK++EK S D ESE E NI V + E ++ ++ E+S +D+ D S NESKLAE Sbjct: 1503 IIGVDVDKRNISEKVNLDEVSKV----------DEIDQFVDPNESESAESNINDVDEGETKQQEQVNFEEVSNVYELENSVILNENTLTESIKKEVDNVENIQNVHANSEEESKVDETDHSIFPNQSEPAESNINKVDEEETKQQDQVNSEKVIEVVEKYNSDDPNYGEFIDPNMKNVDEEEKNIIEESNVKSLSNVDEKEHSTDQIKSELAEPNIRNVDEEERNITADANLKEESKVDKIDHSVNLNEKTLTEPITKEIDKNEQTQTDHVISEEKSKLDEKYYSADPNESEPAESNINEVDKAERKQQKKIDLEEVSNVDKTDHSADSNESKLAE 1828 HSP 18 Score: 111.309 bits (277), Expect = 1.849e-27 Identity = 91/208 (43.75%), Postives = 126/208 (60.58%), Query Frame = 1 Query: 142 EPAESNINEADEEEITQEKFNLEDLSKVYEKDDSGDSNESEPSESYINEVDEGEPKQQEQFNPEEVLKVNKKDNSDDPNQSELVESHIIEIDQGENNIADHVNVDEVSKVEETDHTGNLNESEPYESNIKEVDEGEPKQQEQVNPEEVSKVNEKGDSGDTYESEIVEPNIKNVYEGETDISEEPNVNELSKIDEIDRSVYPNESKLAE 765 E A+ NI + +EE QE+ NLE+++ V E+D S D NE +E + EV E Q ++ N EE K+++ D+S D N+SEL ES+I E+D+GE + VN +EVS V+ TDH+G NE E E NI VD + E+VN +EVSKV+E D ESE E NI +V EGET E+ N E+S + E++ SV NE+ L E Sbjct: 1375 ELADHNIIKVEEETKKQEQINLEEVTNVDERDYSVDQNEITLTEPIMKEVYNVENIQIQRVNSEENSKLDETDHSVDLNESELAESNISEVDEGETKQLEQVNSEEVSNVDITDHSGEPNEHELAEQNIIGVDVDKRNISEKVNLDEVSKVDEIDQFVDPNESESAESNINDVDEGETKQQEQVNFEEVSNVYELENSVILNENTLTE 1582 HSP 19 Score: 110.153 bits (274), Expect = 5.281e-27 Identity = 115/321 (35.83%), Postives = 156/321 (48.60%), Query Frame = 1 Query: 7 IIEIDQGENNVADPVYVDEGSNVYGKDDSSDLNE-------------------------------ETDHSADQIEREPAESNINEADEEEITQ-------------EKFNLED-----------------------------LSKVYEKDDSGDSNESEPSESYINEVDEGEPKQQEQFNPEEVLKVNKKDNSDDPNQSELVESHIIEIDQGENNIADHVNVDEVSKVEETDHTGNLNESEPYESNIKEVDEGEPKQQEQVNPEEVSKVNEKGDSGDTYESEIVEPNIKNVYEGETDISEEPNVNELSKIDEIDRSVYPNE 750 I ++D+GE + V +E SNVY ++S LNE ETDHS + EPAESNIN+ DEEE Q EK+N +D LS V EK+ S D +SE +E I VDE E N +E KV+K D+S + N+ L E EID+ E DHV +E SK++E ++ + NESEP ESNI EVD+ E KQQ++++ EEVS V++ S D+ ES++ E NI V GE +ISE+ N+ E+S + E D SV NE Sbjct: 1544 INDVDEGETKQQEQVNFEEVSNVYELENSVILNENTLTESIKKEVDNVENIQNVHANSEEESKVDETDHSIFPNQSEPAESNINKVDEEETKQQDQVNSEKVIEVVEKYNSDDPNYGEFIDPNMKNVDEEEKNIIEESNVKSLSNVDEKEHSTDQIKSELAEPNIRNVDEEERNITADANLKEESKVDKIDHSVNLNEKTLTEPITKEIDKNEQTQTDHVISEEKSKLDEKYYSADPNESEPAESNINEVDKAERKQQKKIDLEEVSNVDKTDHSADSNESKLAEQNIIEVDVGERNISEQDNLEEVSNVFETDPSVDLNE 1864 HSP 20 Score: 96.6709 bits (239), Expect = 2.194e-22 Identity = 91/254 (35.83%), Postives = 136/254 (53.54%), Query Frame = 1 Query: 4 YIIEIDQGENNVADPVYVDEGSNVYGKDDSSDLNEETDHSADQIEREPAESNINEADEEEITQEKFNLEDLSKVYEKDDSGDSNESEPSESYINEVDEGEPKQQEQFNPEEVLKVNKKDNSDDPNQSELVESHIIEIDQGENNIADHVNVDEVSKVEETDHTGNLNESEPYESNIKEVDEGEPKQQEQVNPEEVSKVNEKGDSGDTYESEIVEPNIKNVYEGETDISEEPNVNELSKIDEIDRSVYPNESKLAE 765 +I I +GE N+++ V E + V+GK HS DQIE E NI + N +D+S V E D + DSNESEP+ES NEVDE E +E+ KV++KDNSDDP ++ELVE I + GE NI+ + ++ KV++T+H+ N + + E NI + N ++S+V+E S ++ E + N+ V +G+ + E N+ E+SK+DEI S PNES+L E Sbjct: 3542 HIKNIVEGEKNISEESNVKELTKVFGKQ----------HSFDQIEGNSEERNITD---------DVNYKDVSHVDETDHADDSNESEPAESNFNEVDEEEGNSEEE------SKVDEKDNSDDPYKNELVEPLIKNFNVGEKNISGESCLKDLLKVDKTEHSVNQMKCKIEERNI----------TDDANLRDLSQVDEIDHSVNSNERTLTGDNVIEVDKGQKNQHEPANLEEMSKVDEIHHSANPNESELDE 3760 HSP 21 Score: 94.3597 bits (233), Expect = 1.345e-21 Identity = 98/255 (38.43%), Postives = 136/255 (53.33%), Query Frame = 1 Query: 109 ETDHSADQIEREPAESNINEADEEEI-TQEKFNLEDLSKVYEKDDSGDSNESEPSESYINEVDEGEPKQQEQFNPEEVLKVNKKDNSDDPNQSELVESHIIEIDQGENNIADHVNVDEVSKVEETDHTGNLNESEPYESNIKEVDEGEPKQQEQVNPEEVSKVNEKGDSGDTYESEIVEP------NIKNVY------------------------EGETDI---------SEEPNVNELSKIDEIDRSVYPNES 753 ET+HS DQ E E E NI E D+ E ++ N+++LSKV E D S D NESE + S INEV++ E KQQE N +E+ +V +KDNS +PN+ E VE +I +D+ E NI + + +S ++ T H+ + NE E E NIK V+E E N EVSKV+E S D E+ + EP NI+N+ E++I E+ N+ E+SK+DE D SV PNES Sbjct: 2417 ETNHSVDQNEGELDEQNIIEIDKSEKNISDQVNVDELSKVDEIDHSADPNESESANSNINEVNKKETKQQELVNSKELSEVYEKDNSYNPNKKEFVEPNIKNVDEVEKNIIEESYLKALSMIDGTKHSVDENEEELAELNIKNVNEKERSLIYNANLIEVSKVDEIYYSEDPNENTLTEPITKEVDNIENIQTDYVKSEELKADETEYSVDQIERESAESNIDEVDEEEITQEKFNLKEVSKVDETDHSVDPNES 2671 HSP 22 Score: 86.2705 bits (212), Expect = 8.249e-19 Identity = 78/208 (37.50%), Postives = 111/208 (53.37%), Query Frame = 1 Query: 70 NVYGKDDSSDLNE--ETDHSADQIEREPAESNINEADEEEITQEKFNLEDLSKVYEKDDSGDSNESEPSESYINEVDEGEPKQQEQFNPEEVLKVNKKDNSDDPNQSELVESHIIEIDQGENNIADHVNVDEVSKVEETDHTGNLNESEPYESNIKEVDEGEPKQQEQVNPEEVSKVNEKGDSGDTYESEIVEPNIKNVYEGETDISE 687 N+ G+ DL + +T+HS +Q++ + E NI + NL DLS+V E D S +SNE + + EVD+G+ Q E N EE+ KV++ +S +PN+SEL ES+I E+D+GE N VN NES P E N EVD GE Q E VN EE S V++ + D ES +P++ V EGE + +E Sbjct: 3659 NISGESCLKDLLKVDKTEHSVNQMKCKIEERNITD---------DANLRDLSQVDEIDHSVNSNERTLTGDNVIEVDKGQKNQHEPANLEEMSKVDEIHHSANPNESELDESNIYEVDEGETNQQKQVNP---------------NESTPIECNTNEVDGGEKYQTEHVNLEEESMVDKIDNFVDPKESPFTKPDVNKVSEGEKNKAE 3842 HSP 23 Score: 83.9593 bits (206), Expect = 4.866e-18 Identity = 71/165 (43.03%), Postives = 101/165 (61.21%), Query Frame = 1 Query: 271 ESYINEVDEGEPKQQEQFNPEEVLKVNKKDNSDDPNQSELVESHIIEIDQGENNIADHVNVDEVSKVEETDHTGNLNESEPYESNIKEVDEGEPKQQEQVNPEEVSKVNEKGDSGDTYESEIVEPNIKNVYEGETDISEEPNVNELSKIDEIDRSVYPNESKLAE 765 E+ IN++ E + E FN + K+++KDNS DP +S +E+ I +ID+ E VN++EV KV+ET+ N N SE + NI +V+E E K+QEQ+N EEV+ V+E+ S D E + EP +K VY E + N E SK+DE D SV NES+LAE Sbjct: 1297 ETQINKLGENVDQVNETFNLYVMTKMDQKDNSVDPYESAHIEAKINKIDE-ETIKQKQVNLEEVPKVDETEEFINPNRSELADHNIIKVEE-ETKKQEQINLEEVTNVDERDYSVDQNEITLTEPIMKEVYNVENIQIQRVNSEENSKLDETDHSVDLNESELAE 1459 HSP 24 Score: 56.6102 bits (135), Expect = 6.345e-9 Identity = 52/144 (36.11%), Postives = 70/144 (48.61%), Query Frame = 1 Query: 7 IIEIDQGENNVADPVYVDEGSNVYGKDDSSDLNEETDHSADQIEREPAESNINEADEEEITQEKFNLEDLSKVYEKDDSGDSNESEPSESYINEVDEGEPKQQEQFNPEEVLKVNKKDNSDDPNQSELVESHIIEIDQGENNIA 438 +IE+D+G+ N +P ++E S V +E HSA+ E E ESNI E DE E Q+K + NES P E NEVD GE Q E N EE V+K DN DP +S + + ++ +GE N A Sbjct: 3722 VIEVDKGQKNQHEPANLEEMSKV----------DEIHHSANPNESELDESNIYEVDEGETNQQK--------------QVNPNESTPIECNTNEVDGGEKYQTEHVNLEEESMVDKIDNFVDPKESPFTKPDVNKVSEGEKNKA 3841 The following BLAST results are available for this feature:
BLAST of SMED30012578 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of SMED30012578 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of SMED30012578 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of SMED30012578 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of SMED30012578 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of SMED30012578 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of SMED30012578 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 0
BLAST of SMED30012578 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 0
BLAST of SMED30012578 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 0
BLAST of SMED30012578 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of SMED30012578 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of SMED30012578 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of SMED30012578 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of SMED30012578 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 1
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30012578 ID=SMED30012578|Name=SMED30012578|organism=Schmidtea mediterranea sexual|type=transcript|length=765bpback to top protein sequence of SMED30012578-orf-1 >SMED30012578-orf-1 ID=SMED30012578-orf-1|Name=SMED30012578-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=255bp HYIIEIDQGENNVADPVYVDEGSNVYGKDDSSDLNEETDHSADQIEREPAback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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