SMED30012459

Overview
NameSMED30012459
Smed IDSMED30012459
Length (bp)2191
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30012459 (SMED30012459) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30012459 (SMED30012459) in cells (dots) of each of the 12 neoblast clusters.

 

back to top


 

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30012459 (SMED30012459) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30012459 (SMED30012459) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

back to top


 

Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

back to top
Anatomical Expression

PAGE et. al., 2020




SMED30012459

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 9

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
pharynxSMED30012459h1SMcG0010424 dd_Smed_v4_2446_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30012459h1SMcG0010424 dd_Smed_v4_2446_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
gutSMED30012459h1SMcG0010424 dd_Smed_v4_2446_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30012459h1SMcG0010424 dd_Smed_v4_2446_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30012459h1SMcG0010424 dd_Smed_v4_2446_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neuronSMED30012459h1SMcG0010424 dd_Smed_v4_2446_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
whole organism asexual adult colorimetric in situ hybridization evidence
cilated neuronSMED30012459h1SMcG0010424 dd_Smed_v4_2446_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30012459h1SMcG0010424 dd_Smed_v4_2446_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017
whole organism asexual adult single-cell RNA-sequencing evidence
ciliated epithelial cellSMED30012459h1SMcG0010424 dd_Smed_v4_2446_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017
whole organism asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30012459 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.002360:6435..23348 +8149
Homology
BLAST of SMED30012459 vs. Planmine SMEST
Match: SMESG000003146.1 (SMESG000003146.1)

HSP 1 Score: 472.626 bits (1215), Expect = 1.261e-163
Identity = 238/254 (93.70%), Postives = 244/254 (96.06%), Query Frame = 2
Query:  146 MKLEIVYAKNRKIINADENMLVAELKRGIAQLFQINANNMILKYASVLMVDEKPILRYGLTENSVIEVLNRKIDLKIISDTSEVLLKDLEVNMKIGDLKKRYSPQDWNNLIFYYRYEYSESNDKKIFDLKILNEKIDGKEDVSEMKKTEIKDRYYSKYGGDKLYWFIHGKLGNDNVTIAEYALNENCTIYIAFQIYVFKGGSVYTFDVFKDLSIRDLKSLIRLKIDKSILDFELTFQGEVLQDTKRIKDYEMDR 907
            MKLEIVYAKNRKIINADENMLVAELKRGIAQLFQINANNMILKYASVLMVD+KPILRYGLTENSVIEVLNRKIDLKIISDTSEVLLKDLE+NMKIGDLKKRYSPQD NNLIFYYRYEYSESNDKKIFDLKILNEKIDGKEDVSEMKKTEIKDRYYSKYGGDKLYWFIHGKLGNDN TI+EYALNENCTIYIAFQIYVF G S Y FDVFKDLSI +LKSLI  KIDKSILDF+LT QGEVLQDTKRIKDYEM+R
Sbjct:    1 MKLEIVYAKNRKIINADENMLVAELKRGIAQLFQINANNMILKYASVLMVDQKPILRYGLTENSVIEVLNRKIDLKIISDTSEVLLKDLELNMKIGDLKKRYSPQDGNNLIFYYRYEYSESNDKKIFDLKILNEKIDGKEDVSEMKKTEIKDRYYSKYGGDKLYWFIHGKLGNDNATISEYALNENCTIYIAFQIYVFNGASTYNFDVFKDLSISNLKSLITNKIDKSILDFDLTLQGEVLQDTKRIKDYEMER 254          
BLAST of SMED30012459 vs. Planmine SMEST
Match: SMESG000003156.1 (SMESG000003156.1)

HSP 1 Score: 448.743 bits (1153), Expect = 4.472e-154
Identity = 225/263 (85.55%), Postives = 244/263 (92.78%), Query Frame = 2
Query:  119 IKLDLRNSGMKLEIVYAKNRKIINADENMLVAELKRGIAQLFQINANNMILKYASVLMVDEKPILRYGLTENSVIEVLNRKIDLKIISDTSEVLLKDLEVNMKIGDLKKRYSPQDWNNLIFYYRYEYSESNDKKIFDLKILNEKIDGKEDVSEMKKTEIKDRYYSKYGGDKLYWFIHGKLGNDNVTIAEYALNENCTIYIAFQIYVFKGGSVYTFDVFKDLSIRDLKSLIRLKIDKSILDFELTFQGEVLQDTKRIKDYEMDR 907
            +K DLR   MKLEI+YAKNRK +NADENMLVA+LKR IA  FQINANNMIL  ASV M+DEK I++YG+TENSVI+VLNRKID+K+ISDTSEVLLKDL++NMKIGDLKKRYSPQ+WNNLIFYYRY+YSESN+ KI DLKILNEKIDGKE+VSEMKKTEIKDRYYSKYGG++LYWFIH KL NDN TIAEYALNENCTIYIAFQIYVFKGGSVYTFDVFKDLSIRDLKSLIR KIDKSILDFELTFQGEVLQDTK IKDYEMDR
Sbjct:    9 LKPDLRIPRMKLEILYAKNRKTVNADENMLVADLKRSIAISFQINANNMILLCASVFMIDEKTIIKYGVTENSVIQVLNRKIDIKVISDTSEVLLKDLDINMKIGDLKKRYSPQNWNNLIFYYRYKYSESNENKIVDLKILNEKIDGKEEVSEMKKTEIKDRYYSKYGGERLYWFIHRKLRNDNATIAEYALNENCTIYIAFQIYVFKGGSVYTFDVFKDLSIRDLKSLIRQKIDKSILDFELTFQGEVLQDTKIIKDYEMDR 271          
BLAST of SMED30012459 vs. Planmine SMEST
Match: SMESG000003156.1 (SMESG000003156.1)

HSP 1 Score: 443.736 bits (1140), Expect = 2.857e-152
Identity = 221/254 (87.01%), Postives = 239/254 (94.09%), Query Frame = 2
Query:  146 MKLEIVYAKNRKIINADENMLVAELKRGIAQLFQINANNMILKYASVLMVDEKPILRYGLTENSVIEVLNRKIDLKIISDTSEVLLKDLEVNMKIGDLKKRYSPQDWNNLIFYYRYEYSESNDKKIFDLKILNEKIDGKEDVSEMKKTEIKDRYYSKYGGDKLYWFIHGKLGNDNVTIAEYALNENCTIYIAFQIYVFKGGSVYTFDVFKDLSIRDLKSLIRLKIDKSILDFELTFQGEVLQDTKRIKDYEMDR 907
            MKLEI+YAKNRK +NADENMLVA+LKR IA  FQINANNMIL  ASV M+DEK I++YG+TENSVI+VLNRKID+K+ISDTSEVLLKDL++NMKIGDLKKRYSPQ+WNNLIFYYRY+YSESN+ KI DLKILNEKIDGKE+VSEMKKTEIKDRYYSKYGG++LYWFIH KL NDN TIAEYALNENCTIYIAFQIYVFKGGSVYTFDVFKDLSIRDLKSLIR KIDKSILDFELTFQGEVLQDTK IKDYEMDR
Sbjct:    1 MKLEILYAKNRKTVNADENMLVADLKRSIAISFQINANNMILLCASVFMIDEKTIIKYGVTENSVIQVLNRKIDIKVISDTSEVLLKDLDINMKIGDLKKRYSPQNWNNLIFYYRYKYSESNENKIVDLKILNEKIDGKEEVSEMKKTEIKDRYYSKYGGERLYWFIHRKLRNDNATIAEYALNENCTIYIAFQIYVFKGGSVYTFDVFKDLSIRDLKSLIRQKIDKSILDFELTFQGEVLQDTKIIKDYEMDR 254          
BLAST of SMED30012459 vs. Planmine SMEST
Match: SMESG000063594.1 (SMESG000063594.1)

HSP 1 Score: 53.5286 bits (127), Expect = 4.546e-7
Identity = 64/265 (24.15%), Postives = 119/265 (44.91%), Query Frame = 2
Query:  209 VAELKRGIAQLFQINANNMILKYASVLMVDEKPILRYGLTENSVIEVLNR-KIDLKIISDTSEVLLKDLEVNM--KIGDLKKRYSPQ-----DWNNLIFYYRYEYSESN--DKKIFDLKILN-------------EKIDGKEDVSEMKK----TEIKDRYYSKYG--GDKLYWFIHGKLGNDNVTIAEYALNENCTIYI------AFQIYV-FKGGSVYTFDVFKDLSIRDLKSLIRLKIDKSILDFELTFQGEVLQDTKRIKDY 895
            ++ +K+ + + F + ++   L Y   ++ DE+ +  Y ++E SVI +L R +  +KI + T +      EV    KI D+KK+   +     D + L++       E    D  I D  ++N               ++GK    E++K    ++IK +   K G   D+        + +D  T+  Y + +   I +        QI+     G    F+V K  +IRD+K  I+ KI  +  + +L +QG +LQD + ++DY
Sbjct:   80 ISSIKKKVQENFGLASDEQKLVYQGGILEDERTVDEYQISEKSVINILARLRGGMKIFAKTMDGKTVAFEVQKLEKISDIKKKIQEKIGLAPDEHRLVYQGGILEDERTVEDYGIADRSVINFVARLRGSMLIFARTMEGKTVAFEVQKAVTISDIKKKIQEKLGLAPDEQKLVYRSGILDDERTVEHYGIADGSVIDVVAMLRRGMQIFAKTMEGKTVAFNVQKSFTIRDVKKKIQEKIGLAPDEQKLVYQGGILQDERTVEDY 344          
BLAST of SMED30012459 vs. Planmine SMEST
Match: SMESG000048258.1 (SMESG000048258.1)

HSP 1 Score: 52.7582 bits (125), Expect = 1.089e-6
Identity = 66/263 (25.10%), Postives = 118/263 (44.87%), Query Frame = 2
Query:  209 VAELKRGIAQLFQINANNMILKYASVLMVDEKPILRYGLTENSVIEVLNRKIDLKIISDTSEVLLKDLEVNMK--IGDLKKRYSPQ-----DWNNLIFYYRYEYSESN-------DKKIFD------LKILNEKIDGKEDVSEMKKTE----IKDRYYSKYG---GDKLYWFIHGKLGNDNVTIAEYALNENCTIYI------AFQIYV-FKGGSVYTFDVFKDLSIRDLKSLIRLKIDKSILDFELTFQGEVLQDTKRIKDY 895
            + ++K  I +   +  +  IL Y   ++ DE+    YG+ + S+I+V+  + D++I   T +  +  +EV     I D+K R   Q     D   L++       E         D+ + D      + IL + +DGK    E++KT+    +K +   K G    +++  +  G L  D  T+ EY + E   I +        QI+     G    F+V K   IRD+K  I+ KI  +  +  L +QG +L+D + ++DY
Sbjct:  262 IRDVKLKIQEKVGVAPDEQILVYQGGILEDERTAEDYGIADESMIDVVAIR-DMQIFPKTGDGKIVPIEVQKTDTIRDVKLRIQNQIGLAPDEPKLVYQGGILEDERTAEDYGIADESMIDVVAIGGMVILAKTMDGKTVAFEVQKTDTIRDVKLKIQEKVGVAPDEQILVYQGGILYEDERTVEEYQIAEKSVINVVARPRGGMQIFAKTMDGKTVAFEVRKAEKIRDVKLKIQEKIGLAPGEQRLVYQGGILEDERTVEDY 523          
The following BLAST results are available for this feature:
BLAST of SMED30012459 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30012459 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30012459 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30012459 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30012459 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30012459 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30012459 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30012459 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30012459 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30012459 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30012459 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30012459 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30012459 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30012459 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000003146.11.261e-16393.70SMESG000003146.1[more]
SMESG000003156.14.472e-15485.55SMESG000003156.1[more]
SMESG000003156.12.857e-15287.01SMESG000003156.1[more]
SMESG000063594.14.546e-724.15SMESG000063594.1[more]
SMESG000048258.11.089e-625.10SMESG000048258.1[more]
back to top
Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30012459 ID=SMED30012459|Name=SMED30012459|organism=Schmidtea mediterranea sexual|type=transcript|length=2191bp
ATGTACGAAAAATCATTTTTTAATTTAAACTCCACTCAATGCATTATGAA
AGTAATGCAGTAAAGTAAACTGAAATTTCAACCAATCATAATTATTTGTT
TGTTACTAAATTTAGATCATAAAACTCGATCTAAGAAATTCCGGAATGAA
ATTGGAAATTGTGTATGCTAAAAATCGGAAAATTATTAATGCCGATGAAA
ATATGCTTGTTGCAGAACTGAAGCGAGGAATTGCCCAACTATTTCAAATA
AATGCGAATAATATGATTCTTAAATACGCAAGTGTTCTCATGGTAGATGA
GAAGCCGATTCTTAGATATGGACTCACTGAGAATTCTGTTATTGAAGTGT
TGAATCGGAAAATCGACCTTAAAATCATCAGTGACACTTCGGAAGTTTTA
TTGAAAGATTTGGAGGTGAACATGAAAATAGGGGATCTGAAAAAGAGATA
TTCTCCGCAAGACTGGAATAATTTAATTTTCTATTACCGATACGAATATT
CGGAATCCAATGATAAGAAGATTTTTGATTTAAAGATTCTTAATGAAAAG
ATTGACGGAAAAGAAGACGTTTCAGAAATGAAAAAAACTGAAATAAAGGA
TAGATATTACTCTAAATATGGGGGTGACAAATTATATTGGTTTATACATG
GAAAGCTGGGAAATGATAATGTAACTATAGCCGAATACGCATTAAATGAA
AATTGTACAATATATATTGCATTCCAAATATATGTATTCAAAGGCGGCTC
TGTTTATACATTTGATGTATTCAAGGATTTATCAATCCGTGACTTGAAGA
GTCTAATTAGACTAAAAATAGATAAATCTATTCTGGACTTTGAATTGACA
TTTCAAGGGGAAGTTCTCCAAGATACTAAGAGAATAAAGGATTACGAAAT
GGATCGAGGGTGCACATTAATAATGACCATTGGCACGGGCGGTGGATGAC
TGCATAACTGCTGGCTGATATTTTATATCTTTATTTATTTGAAAATTGAA
ATGTTGTTAAATTATTCTAAACAGAAATCAGTAAAATATTTTACTTGTAT
TTACCGAAAATGATTGCAGATGTCAGTTTTTATATGATTCCCTTTTTTGA
TGACAATATATTATCAAATACGACTGGGGGTTAGGAACACTGCTAGAAAT
ATTTAGACATTGCAACTCTATTAGGAAAACTAAATAATACACAACTTAAG
GAAATTACAAAGAAGAACCAAGCAAAGTATTATTAAAACGGAATTTCCAT
TTACCAACCTGATTAAATAAAATAAGCCATTCAATTTTTGATAAGTATTA
AGAACATGTTTTTAGCATAAATCAACCAATCAGGATTTAAACATTACCAA
AACCTGAAAATTACCAATTTTTAATGTTTCGACCTGATGATAACATTGAA
ACTGTCTAAATATGTTAAGTTATTTGAGTAACGGTTTCCATTATGTAAGT
CAATGATTTAATCTATATAAAATTTATGCTTTACTTGTTCTAGCATTCAA
AAAACATCTTGCAAAAAATATCCGTGAATGAAAAGCTGTTATTGATAGAA
TTGTATTTGTACAATGAAACTATTGAGCTTTGTTTGTGAGTATATTCTAT
ATTATAAGACTGGATTTCAAATTCTGTTTCAGCATCATGTTCGAATCTTG
GTTTTAAATATAAATATCATAAGGGTAATGCCACTTGCATAGAAGTGACT
TCCAATTATCTACTTTCTCAAATTCTTGATTACTTTTAGCGGAAGGAATT
GATTATTTTAAGTGAACACAGTTTTCGCTTTGTGTTTGTATTGTTGCATT
TGAAGCGATATTGATTTCTGCAAAGATAGGAATGACGCCCGTTATCTCCG
TATACTTGTTATAAACTATTTTTAGTAATATACAACAAATTATACATGTT
TGAAATTATATTAAGAAATAGGGGTGCCACAAGAAAAATTACCAAATTAA
GGCTCCTGTATTAGAAAAAGATTGAAAAACTCTGAATTATGGTCTACTTT
TGTGAAAATATGATATAATGAAACTATTTTTTGGTTATATTTTTTTACTA
GATTCAGGCTATACTGGCTGACTTTTTCATTGCTAAAATGGACATCAGGA
TGCACTAAAATGTCAGTAAAATATATTTTAATTTGAGTAATAAATCATTC
AGTTATTTATTTAGTGTTGCATAAATTTTAAGAGATCGGAA
back to top

protein sequence of SMED30012459-orf-1

>SMED30012459-orf-1 ID=SMED30012459-orf-1|Name=SMED30012459-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=268bp
MKLEIVYAKNRKIINADENMLVAELKRGIAQLFQINANNMILKYASVLMV
DEKPILRYGLTENSVIEVLNRKIDLKIISDTSEVLLKDLEVNMKIGDLKK
RYSPQDWNNLIFYYRYEYSESNDKKIFDLKILNEKIDGKEDVSEMKKTEI
KDRYYSKYGGDKLYWFIHGKLGNDNVTIAEYALNENCTIYIAFQIYVFKG
GSVYTFDVFKDLSIRDLKSLIRLKIDKSILDFELTFQGEVLQDTKRIKDY
EMDRGCTLIMTIGTGGG*
back to top
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000016pharynx
PLANA:0000026gut
PLANA:0000034epidermis
PLANA:0000099neuron
PLANA:0000106ciliated epithelial cell
PLANA:0002032epidermal cell
Vocabulary: INTERPRO
TermDefinition
IPR000626Ubiquitin-like_dom
IPR029071Ubiquitin-like_domsf
Vocabulary: molecular function
TermDefinition
GO:0005515protein binding