SMED30012451
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30012451 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 18Note: Hover over icons to view figure legend
Alignments
SMED30012451 aligns in the following genomic locations:
Homology
BLAST of SMED30012451 vs. Ensembl Human
Match: PSAP (prosaposin [Source:HGNC Symbol;Acc:HGNC:9498]) HSP 1 Score: 53.5286 bits (127), Expect = 2.238e-7 Identity = 35/175 (20.00%), Postives = 80/175 (45.71%), Query Frame = -3 Query: 190 CKICEWIVSRYELMINDLVPFFQILVKSFYVCFIYDQEIATQCYNSIFSVGHEVFEAILHKEDPTKVCKLMNVCVNGTEWNHFNYINLIMFVQQPQTTDKCKYCVDIITWNEKYINHNNMPRMDQSYLLDYCGIFKCPFNEDCVRFFSGPGYQVLKDVINKTDPIKVCQYLKVCP 714 C++CE++V +I++ +IL +C + ++ +C + + G + +L + P VC ++++C +GT L + V QP+ C+ C ++ + ++ + N+ + + L C P+ + C +F + +++ ++ DP VC + CP Sbjct: 315 CEVCEFLVKEVTKLIDNNKTEKEILDAFDKMCSKLPKSLSEECQEVVDTYGSSILSILLEEVSPELVCSMLHLC-SGT-----RLPALTVHVTQPKDGGFCEVCKKLVGYLDRNLEKNSTKQEILAALEKGCSFLPDPYQKQCDQFVAEYEPVLIEILVEVMDPSFVCLKIGACP 483
BLAST of SMED30012451 vs. Ensembl Human
Match: PSAP (prosaposin [Source:HGNC Symbol;Acc:HGNC:9498]) HSP 1 Score: 53.5286 bits (127), Expect = 2.390e-7 Identity = 35/175 (20.00%), Postives = 80/175 (45.71%), Query Frame = -3 Query: 190 CKICEWIVSRYELMINDLVPFFQILVKSFYVCFIYDQEIATQCYNSIFSVGHEVFEAILHKEDPTKVCKLMNVCVNGTEWNHFNYINLIMFVQQPQTTDKCKYCVDIITWNEKYINHNNMPRMDQSYLLDYCGIFKCPFNEDCVRFFSGPGYQVLKDVINKTDPIKVCQYLKVCP 714 C++CE++V +I++ +IL +C + ++ +C + + G + +L + P VC ++++C +GT L + V QP+ C+ C ++ + ++ + N+ + + L C P+ + C +F + +++ ++ DP VC + CP Sbjct: 318 CEVCEFLVKEVTKLIDNNKTEKEILDAFDKMCSKLPKSLSEECQEVVDTYGSSILSILLEEVSPELVCSMLHLC-SGT-----RLPALTVHVTQPKDGGFCEVCKKLVGYLDRNLEKNSTKQEILAALEKGCSFLPDPYQKQCDQFVAEYEPVLIEILVEVMDPSFVCLKIGACP 486
BLAST of SMED30012451 vs. Ensembl Zebrafish
Match: psap (prosaposin [Source:ZFIN;Acc:ZDB-GENE-020108-1]) HSP 1 Score: 55.8398 bits (133), Expect = 2.701e-8 Identity = 44/200 (22.00%), Postives = 81/200 (40.50%), Query Frame = -3 Query: 190 FDKPVQ-QPKKDLSPESSAIKDSNACKICEWIVSRYELMINDLVPFFQILVKSFYVCFIYDQEIATQCYNSIFSVGHEVFEAILHKEDPTKVCKLMNVCVNGTEWNHFNYINLIMFVQQPQTTDKCKYCVDIITWNEKYINHNNMPRMDQSYLLDYCGIFKCPFNEDCVRFFSGPGYQVLKDVINKTDPIKVCQYLKVCP 786 +KPV P K+L ++DS C ICE+++ E MI D +I+ VC I + QC + I + G + + ++ + DP VC + +C + +H ++ F C C + + + + N + +L C ++C + +++ ++ DP VC L CP Sbjct: 293 VEKPVATMPAKNLV----RVRDSPQCAICEYVMKEIENMIQDQTSEAEIVQAVEKVCNILPSTLTAQCKDLIETYGQAIIDLLVQEADPKTVCSFLALC---SGVSHVPVMDKQHFA----AGGFCDVCKMAVRYVDGILEQNATQSEIEEAVLKVCSFLPDAVKDECNQLIEQYEPLLVQLLLQTLDPDFVCMKLGACP 481
BLAST of SMED30012451 vs. Ensembl Zebrafish
Match: psap (prosaposin [Source:ZFIN;Acc:ZDB-GENE-020108-1]) HSP 1 Score: 55.8398 bits (133), Expect = 2.795e-8 Identity = 44/200 (22.00%), Postives = 81/200 (40.50%), Query Frame = -3 Query: 190 FDKPVQ-QPKKDLSPESSAIKDSNACKICEWIVSRYELMINDLVPFFQILVKSFYVCFIYDQEIATQCYNSIFSVGHEVFEAILHKEDPTKVCKLMNVCVNGTEWNHFNYINLIMFVQQPQTTDKCKYCVDIITWNEKYINHNNMPRMDQSYLLDYCGIFKCPFNEDCVRFFSGPGYQVLKDVINKTDPIKVCQYLKVCP 786 +KPV P K+L ++DS C ICE+++ E MI D +I+ VC I + QC + I + G + + ++ + DP VC + +C + +H ++ F C C + + + + N + +L C ++C + +++ ++ DP VC L CP Sbjct: 291 VEKPVATMPAKNLV----RVRDSPQCAICEYVMKEIENMIQDQTSEAEIVQAVEKVCNILPSTLTAQCKDLIETYGQAIIDLLVQEADPKTVCSFLALC---SGVSHVPVMDKQHFA----AGGFCDVCKMAVRYVDGILEQNATQSEIEEAVLKVCSFLPDAVKDECNQLIEQYEPLLVQLLLQTLDPDFVCMKLGACP 479
BLAST of SMED30012451 vs. Ensembl Zebrafish
Match: psap (prosaposin [Source:ZFIN;Acc:ZDB-GENE-020108-1]) HSP 1 Score: 51.2174 bits (121), Expect = 3.331e-7 Identity = 29/98 (29.59%), Postives = 48/98 (48.98%), Query Frame = -3 Query: 493 DKPVQ-QPKKDLSPESSAIKDSNACKICEWIVSRYELMINDLVPFFQILVKSFYVCFIYDQEIATQCYNSIFSVGHEVFEAILHKEDPTKVCKLMNVC 783 +KPV P K+L ++DS C ICE+++ E MI D +I+ VC I + QC + I + G + + ++ + DP VC + +C Sbjct: 54 EKPVATMPAKNLV----RVRDSPQCAICEYVMKEIENMIQDQTSEAEIVQAVEKVCNILPSTLTAQCKDLIETYGQAIIDLLVQEADPKTVCSFLALC 147
BLAST of SMED30012451 vs. UniProt/SwissProt
Match: sp|P07602|SAP_HUMAN (Prosaposin OS=Homo sapiens OX=9606 GN=PSAP PE=1 SV=2) HSP 1 Score: 53.5286 bits (127), Expect = 1.075e-6 Identity = 35/175 (20.00%), Postives = 80/175 (45.71%), Query Frame = -3 Query: 190 CKICEWIVSRYELMINDLVPFFQILVKSFYVCFIYDQEIATQCYNSIFSVGHEVFEAILHKEDPTKVCKLMNVCVNGTEWNHFNYINLIMFVQQPQTTDKCKYCVDIITWNEKYINHNNMPRMDQSYLLDYCGIFKCPFNEDCVRFFSGPGYQVLKDVINKTDPIKVCQYLKVCP 714 C++CE++V +I++ +IL +C + ++ +C + + G + +L + P VC ++++C +GT L + V QP+ C+ C ++ + ++ + N+ + + L C P+ + C +F + +++ ++ DP VC + CP Sbjct: 315 CEVCEFLVKEVTKLIDNNKTEKEILDAFDKMCSKLPKSLSEECQEVVDTYGSSILSILLEEVSPELVCSMLHLC-SGT-----RLPALTVHVTQPKDGGFCEVCKKLVGYLDRNLEKNSTKQEILAALEKGCSFLPDPYQKQCDQFVAEYEPVLIEILVEVMDPSFVCLKIGACP 483
BLAST of SMED30012451 vs. UniProt/SwissProt
Match: sp|P26779|SAP_BOVIN (Prosaposin OS=Bos taurus OX=9913 GN=PSAP PE=1 SV=3) HSP 1 Score: 51.2174 bits (121), Expect = 7.102e-6 Identity = 42/206 (20.39%), Postives = 86/206 (41.75%), Query Frame = -3 Query: 190 ISENVKSFDKPVQQPKKDLSPESSAIKDSNACKICEWIVSRYELMINDLVPFFQILVKSFYVCFIYDQEIATQCYNSIFSVGHEVFEAILHKEDPTKVCKLMNVCVNGTEWNHFNYINLIMFVQQPQTTDKCKYCVDIITWNEKYINHNNMPRMDQSYLLDYCGIFKCPFNEDCVRFFSGPGYQVLKDVINKTDPIKVCQYLKVCP 807 +SENV V+ KKD +P + I C++CE++V +I++ +IL VC +A QC + + G + +L + P VC ++++C + + V + C+ C ++ + ++ + N+ + L C + + C +F + +++ ++ DP VC + CP Sbjct: 289 VSENVIPALGLVEPIKKDPAPAKADIY----CEVCEFVVKEVAKLIDNNRTEEEILHALDKVCSKLPTSLAEQCQEVVDTYGSSILSILLDEASPELVCSMLHLC------SSRGLPAATVRVMPRKDGGFCEVCKKLVGYLDRNLEKNSTKEQILAALEKGCSFLPDQYRKQCDQFVTEYEPVLIEILVEVMDPSFVCLKIGACP 484
BLAST of SMED30012451 vs. TrEMBL
Match: E9IQG2 (Uncharacterized protein (Fragment) OS=Solenopsis invicta OX=13686 GN=SINV_15287 PE=4 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 9.253e-9 Identity = 50/224 (22.32%), Postives = 97/224 (43.30%), Query Frame = -3 Query: 148 ENVKSFDKPVQQPKKDLSP----ESSAIKDSNACKICEWIVSRYELMINDLVPFFQILVKSFY--VCFIYDQEIATQCYNSIFSVGHEVFEAILHKEDPTKVCKLMNVCVNGTEWNHFNYINLIMFVQQPQTTDKCKYCVDIITWNEKYINHNNMPRMDQSYLLDYCGIFKCPFNEDCVRFFSGPGYQVLKDVINKTDPIKVCQYLKVCPPKKSVKTFQNFLPK 801 E+ KS + +Q P + + P +S + + AC +CE+++ + I + P + VK F+ VC I +C + + G V ++ + DP++VC ++ +C + N + I + + + C C+ +T I +N ++ L C + C F +++ +I P +VC YL++C P K NF+P+ Sbjct: 418 EHPKSEAEEMQLPLERMMPFPLLQSESAGGTQACTLCEYLLHYIQDTITN--PTNEEKVKEFFKKVCTKIPSSIEGECQEFVNTYGDAVVALLVQEIDPSQVCSMIRICPSEALLNMWQKIPKEFILTKVEDKPSCPLCLLAVTQVYDVIKNNKTEASIEAELDKLCNHLPRSLTDQCTEFVKTYSKELVDMLIADMTPQEVCTYLRLCDPTKDPGPKHNFIPE 639
BLAST of SMED30012451 vs. TrEMBL
Match: A0A2I4B147 (prosaposin isoform X2 OS=Austrofundulus limnaeus OX=52670 GN=psap PE=4 SV=1) HSP 1 Score: 64.6994 bits (156), Expect = 8.959e-8 Identity = 41/186 (22.04%), Postives = 82/186 (44.09%), Query Frame = -3 Query: 181 IKDSNACKICEWIVSRYELMINDLVPFFQILVKSFYVCFIYDQEIATQCYNSIFSVGHEVFEAILHKEDPTKVCKLMNVCVNGTEWNHFNYINLIMFVQQPQ--TTDKCKYCVDIITWNEKYINHNNMPRMDQSYLLDYCGIFKCPFNEDCVRFFSGPGYQVLKDVINKTDPIKVCQYLKVCPPKK 732 +++S CKICE+++ + E M+ D QI+ VC + + QC + I + G + E ++ + DP VC +M +C NG + ++ + QP+ C+ C ++++ + + N + + C + +C + +++ ++ DP VC L CP K Sbjct: 318 VRESPTCKICEYVMKQLESMLEDQATEEQIIHAVESVCSVLPSHLTAQCKDLIETYGQAIIELLVQQADPKTVCTVMALC-NGANRQY------VVTLDQPRYKAGGYCEVCKMVVSYIDGILEKNATEAEIEEAVKKVCSFLPDAYRTECDQLIEQYEPMLVQLLLQMLDPDFVCTKLGACPEAK 496
BLAST of SMED30012451 vs. TrEMBL
Match: A0A2I4B111 (prosaposin isoform X1 OS=Austrofundulus limnaeus OX=52670 GN=psap PE=4 SV=1) HSP 1 Score: 64.6994 bits (156), Expect = 9.227e-8 Identity = 41/186 (22.04%), Postives = 82/186 (44.09%), Query Frame = -3 Query: 181 IKDSNACKICEWIVSRYELMINDLVPFFQILVKSFYVCFIYDQEIATQCYNSIFSVGHEVFEAILHKEDPTKVCKLMNVCVNGTEWNHFNYINLIMFVQQPQ--TTDKCKYCVDIITWNEKYINHNNMPRMDQSYLLDYCGIFKCPFNEDCVRFFSGPGYQVLKDVINKTDPIKVCQYLKVCPPKK 732 +++S CKICE+++ + E M+ D QI+ VC + + QC + I + G + E ++ + DP VC +M +C NG + ++ + QP+ C+ C ++++ + + N + + C + +C + +++ ++ DP VC L CP K Sbjct: 320 VRESPTCKICEYVMKQLESMLEDQATEEQIIHAVESVCSVLPSHLTAQCKDLIETYGQAIIELLVQQADPKTVCTVMALC-NGANRQY------VVTLDQPRYKAGGYCEVCKMVVSYIDGILEKNATEAEIEEAVKKVCSFLPDAYRTECDQLIEQYEPMLVQLLLQMLDPDFVCTKLGACPEAK 498
BLAST of SMED30012451 vs. TrEMBL
Match: A0A5A9P6K4 (Prosaposin Proactivator polypeptide OS=Triplophysa tibetana OX=1572043 GN=E1301_Tti013819 PE=4 SV=1) HSP 1 Score: 62.3882 bits (150), Expect = 4.064e-7 Identity = 42/200 (21.00%), Postives = 85/200 (42.50%), Query Frame = -3 Query: 190 FDKP-VQQPKKDLSPESSAIKDSNACKICEWIVSRYELMINDLVPFFQILVKSFYVCFIYDQEIATQCYNSIFSVGHEVFEAILHKEDPTKVCKLMNVCVNGTEWNHFNYINLIMFVQQPQTTDKCKYCVDIITWNEKYINHNNMPRMDQSYLLDYCGIFKCPFNEDCVRFFSGPGYQVLKDVINKTDPIKVCQYLKVCP 786 +KP V +P KD+ ++DS C ICE+++ E M+ D +I+ VC + + QC + I + G + E ++ + DP +C +++C + +I+ +M + + C C + + + + N + + C F ++C + +++ ++ DP VC L CP Sbjct: 291 LEKPAVGKPAKDMR----RVRDSPQCAICEFMMKELESMVQDQTSEQEIVQAVEKVCDVLPSSLTAQCKDLIEAYGQAIIELLVQEADPKTICTFLSLCKEASR----TFIS-VMDKTRYEAGGFCDVCKMAVRYVDGILQQNATQAQIEEAVRKVCDFLPDAFKDECDQLIEQYEPLMVQLLLQTLDPDFVCMKLGACP 481
BLAST of SMED30012451 vs. TrEMBL
Match: A0A1B6E2D6 (Uncharacterized protein OS=Clastoptera arizonana OX=38151 GN=g.11094 PE=4 SV=1) HSP 1 Score: 62.7734 bits (151), Expect = 4.379e-7 Identity = 47/200 (23.50%), Postives = 84/200 (42.00%), Query Frame = -3 Query: 175 VQQPKKDLSPESSAIKDSNACKICEWIVSRYELMINDLVPFFQILVKSFYVCFIYDQEIATQCYNSIFSVGHEVFEAILHKEDPTKVCKLMNVCVNGTEWNHFNYINLIMFVQQPQTTDKCKYCVDIITWNEKYINHNNMPRMDQSYLLDYCGIFKCPFNEDCVRFFSGPGYQVLKDVINKTDPIKVCQYLKVCPPKKSV 774 +Q P + L+P S K+ C+ CE+ + ++ I D + Q+ C +++QC + I + G + K DP++VC + VC TE + N + C C+ ++ + N + L D C + +DCV+ +V+ VI + P++VC Y+K+C K V Sbjct: 208 MQLPAERLTPLSMLPKNKEECEFCEYFLHYLQVEITDPMTEKQLKQLIERGCDKLPNSVSSQCKDFIETYGQAFVALLAQKIDPSQVCPSIGVCPGLTEKSLINE----------KDKPTCPLCLMVMETLTDELKDNKTEDNIRKTLDDICNLLPKTVTKDCVQLVDTYFEEVIDMVIAEFTPLEVCSYMKMCSAPKDV 397
BLAST of SMED30012451 vs. Ensembl Cavefish
Match: psap (prosaposin [Source:ZFIN;Acc:ZDB-GENE-020108-1]) HSP 1 Score: 51.2174 bits (121), Expect = 8.530e-7 Identity = 36/180 (20.00%), Postives = 68/180 (37.78%), Query Frame = -3 Query: 190 KDSNACKICEWIVSRYELMINDLVPFFQILVKSFYVCFIYDQEIATQCYNSIFSVGHEVFEAILHKEDPTKVCKLMNVCVNGTEWNHFNYINLIMFVQQPQTTDKCKYCVDIITWNEKYINHNNMPRMDQSYLLDYCGIFKCPFNEDCVRFFSGPGYQVLKDVINKTDPIKVCQYLKVCP 729 ++ C ICE+++ E MI D +++ VC I + QC + I + G + E ++ + DP +C ++ +C G + F Q C C + + + + N + + C F C + +++ ++ DP VC L CP Sbjct: 296 REPPQCAICEYVMKELEDMIQDQTTEEEVMQAVEKVCNILPSTLTAQCKDLIETYGQAIIELLVQEADPKTICTVLGLC-KGASRAFIPVMEKADF----QAGGFCDVCKMAVRYVDGILEQNATEAQIEEAVRKVCNFLPDEFKTQCDQLVQQYEPLLIQLLLQTLDPDFVCMKLGACP 470
BLAST of SMED30012451 vs. Ensembl Cavefish
Match: psap (prosaposin [Source:ZFIN;Acc:ZDB-GENE-020108-1]) HSP 1 Score: 48.1358 bits (113), Expect = 7.535e-6 Identity = 20/83 (24.10%), Postives = 40/83 (48.19%), Query Frame = -3 Query: 481 KDSNACKICEWIVSRYELMINDLVPFFQILVKSFYVCFIYDQEIATQCYNSIFSVGHEVFEAILHKEDPTKVCKLMNVCVNGT 729 ++ C ICE+++ E MI D +++ VC I + QC + I + G + E ++ + DP +C ++ +C + Sbjct: 296 REPPQCAICEYVMKELEDMIQDQTTEEEVMQAVEKVCNILPSTLTAQCKDLIETYGQAIIELLVQEADPKTICTVLGLCKGAS 378
BLAST of SMED30012451 vs. Ensembl Nematostella
Match: EDO31455 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SXX5]) HSP 1 Score: 59.3066 bits (142), Expect = 6.392e-10 Identity = 41/197 (20.81%), Postives = 84/197 (42.64%), Query Frame = -3 Query: 175 PKKDLSPESSAIKDSNACKICEWIVSRYELMINDLVPFFQILVKSFYVCFIYDQEIATQCYNSIFSVGHEVFEAILHKEDPTKVCKLMNVCVNGTEWNHFNYINLIMFVQQPQTTDKCKYCVDIITWNEKYINHNNMPRMDQSYLLDYCGIFKCPFNEDCVRFFSGPGYQVLKDVINKTDPIKVCQYLKVCPPKKSV 765 PKK + + +K S C +CE+++ + M++ +I+ VC I I ++C + G + E + + P VC + +C N + ++ + + C+ C ++T+ + ++N+N ++L C +C S G VL+ +I TDP +C+ + +C + V Sbjct: 225 PKKHVLKATYPVKTSTECVLCEFVMKELDDMLSKNSTQQEIIQAVEKVCSILPSTIKSKCDQFVQEYGPALIEILEQEVSPKLVCTTLGLCANREHRIAMRRSHKLVI----GSNETCEICTTVMTYLKAFLNNNATDEEIVNFLEKVCNYLPSQIASECNAIVSEYGSTVLQ-IIANTDPTTLCKEIGLCSANQHV 416
BLAST of SMED30012451 vs. Ensembl Medaka
Match: psap (prosaposin [Source:NCBI gene;Acc:101163196]) HSP 1 Score: 55.8398 bits (133), Expect = 2.447e-8 Identity = 35/183 (19.13%), Postives = 79/183 (43.17%), Query Frame = -3 Query: 190 IKDSNACKICEWIVSRYELMINDLVPFFQILVKSFYVCFIYDQEIATQCYNSIFSVGHEVFEAILHKEDPTKVCKLMNVCVNGTEWNHFNYINLIMFVQQPQ--TTDKCKYCVDIITWNEKYINHNNMPRMDQSYLLDYCGIFKCPFNEDCVRFFSGPGYQVLKDVINKTDPIKVCQYLKVCP 732 +K+S C ICE+++ + E M+ D +++ VC++ + QC + I + G + E ++ + DP VC ++ +C + + ++ + QP+ T C+ C + + + + N + + C + +C + +++ ++ DP VC + CP Sbjct: 316 VKESPQCAICEFVMKQVEAMLTDETTEEEVIQAVQKVCYLVPSSLTAQCKDLIETYGEAIIELLVQEVDPKTVCTMLALCNDASR-------AYVVALDQPRFKTGGYCEVCKMAVGYIDGILEKNATEAEIEEAVKKVCSFLPDAYKTECDQLVEQYEPVLVQLLLQMLDPDFVCTKVGACP 491
BLAST of SMED30012451 vs. Planmine SMEST
Match: SMESG000019984.1 (SMESG000019984.1) HSP 1 Score: 262.307 bits (669), Expect = 1.881e-87 Identity = 128/230 (55.65%), Postives = 162/230 (70.43%), Query Frame = -3 Query: 190 MRSIYFAGIFVLCYSFVQAGNTWISENVKSFDKPVQQPKKDLSPESSAIKDSNACKICEWIVSRYELMINDLVPFFQILVKSFYVCFIYDQEIATQCYNSIFSVGHEVFEAILHKEDPTKVCKLMNVCVNGTEWN-HFNYINLIMFVQQPQTTDKCKYCVDIITWNEKYINHNNMPRMDQSYLLDYCGIFKCPFNEDCVRFFSGPGYQVLKDVINKTDPIKVCQYLKVCP 876 MRSIYFAGIFVLCYSFVQA N + ++VK+FDKPV+QP KDL ESS S AC IC +V YE +IN+ +P IL+K C + + +I QC+ VG++V +AILHKE+ T VC+LMN+CVN TE + HF ++ L+M VQQPQT D C YCVD I W E IN+ N P Q+ LDYC IF+CP+N+ C F+SG GYQV+K ++ KTDPI+VCQYL VCP Sbjct: 1 MRSIYFAGIFVLCYSFVQADNIRLLKDVKTFDKPVEQPNKDLYQESSIGNASKACDICRKVVENYEAVINNDLPIRYILIKILQACDLLNYDIKRQCHEFYRGVGYKVLKAILHKENSTAVCRLMNICVNETELDQHFKFMGLMMLVQQPQTIDACTYCVDTIAWYEININYYNRPERVQTGFLDYCSIFRCPYNDLCSVFYSGTGYQVIKYILKKTDPIRVCQYLNVCP 230
BLAST of SMED30012451 vs. Planmine SMEST
Match: SMESG000019986.1 (SMESG000019986.1) HSP 1 Score: 116.316 bits (290), Expect = 1.431e-28 Identity = 66/197 (33.50%), Postives = 105/197 (53.30%), Query Frame = -3 Query: 178 KDLSPESSAIKDSNACKICEWIVSRYELMINDLVPFFQILVKSFYVCFIYDQEIATQCYNSIFSVGHEVFEAILHKEDPTKVCKLMNVCVNGTEW---NHFNYINLIMFVQQPQTTDKCKYCVDIITWNEKYINHNNMPRMDQSYLLDYCGIFKCPFNEDCVRFFSGPGYQVLKDVINKTDPIKVCQYLKVCPPKKS 759 K + P++ A + CK C WIV RYE ++N + I K +C IY+ + C G EV AIL E P K+C+L+N+C + E N+F + LI F ++P D C+ C+ +I + EK N++ Q LL+YC IF+ F CV +F+ G+++++ ++ K +P KVC+ L C + S Sbjct: 473 KMVKPKTVARHHNKGCKSCMWIVKRYENIVNKSLSAEYIQTKVIGLCDIYNATVKNLCITFYQGKGLEVINAILASESPRKICQLINLCQSDKERRQENNFLDLLLIHFHRKP-APDHCQSCITMIKFEEKNFNNSKSAVEIQGKLLEYCSIFQQKFANICVEYFNSTGFEIIESILKKENPKKVCEKLHYCHQRNS 668 HSP 2 Score: 98.5969 bits (244), Expect = 1.609e-22 Identity = 53/180 (29.44%), Postives = 92/180 (51.11%), Query Frame = -3 Query: 178 CKICEWIVSRYELMINDLVPFFQILVKSFYVCFIYDQEIATQCYNSIFSVGHEVFEAILHKEDPTKVCKLMNVCVNGTEW-NHFNYINLIMFVQQPQTTDKCKYCVDIITWNEKYINHNNMPRMDQSYLLDYCGIFKCPFNEDCVRFFSGPGYQVLKDVINKTDPIKVCQYLKVCPPKKS 714 CK+C+ V Y++ IN + I K C IY + T C + G +V +A+L + T +CKLM+ C+ +E +++L+ + ++ KC+ C+ +TW E+ +N N + Q + + C + + CV++FS G Q++KDV+N DP CQ K+C + S Sbjct: 689 CKLCKKRVEFYKISINKSLNPAVIQQKMIAGCAIYKLSLKTLCVFFYNTAGFDVIKAVLTNGESTTICKLMDFCLVDSEIEGSHQFLDLLQMLTSGKSEKKCQLCISSVTWLEENVNKENSSKFVQELMFEICSVLYQRYQRMCVKYFSTRGLQLIKDVLNDVDPNVSCQTQKLCRKRHS 868 HSP 3 Score: 88.1965 bits (217), Expect = 4.794e-19 Identity = 59/237 (24.89%), Postives = 108/237 (45.57%), Query Frame = -3 Query: 142 FVQAGNTWISENVKSFDKPVQQPKK----DLSPESSAIKDSNACKICEWIVSRYELMINDLVPFFQILVKSFYVCFIYDQEIATQCYNSIFSVGHEVFEAILHKEDPTKVCKLMNVCVNGTEWNH-FNYINLIMFVQQPQTTDKCKYCVDIITWNEKYINHNNMPRMDQSYLLDYCGIFKCPFNEDCVRFFSGPGYQVLKDVINKTDPIKVCQYLKVCPP--KKSVKTFQNFLPKMI 831 ++ I +N+ D V P ++S I + C +C+ ++ E+ +N + I + Y C ++ +C +G EV +++L EDPTKVCK + +C+ + + + +++L+ + +KCK C I E+ N + Q+ + D+CGIF CP+ C +F+ G +V + V+ P VCQ L+ C KK + + PK + Sbjct: 248 LARSDTKEICQNLTLCDMRVVDPNTLEVINMSEVFDEISVNQKCNLCKNMIKLLEISVNKTLNATNIQNRVLYACTVFTSPAKDKCIKFYQGLGLEVIKSVLVDEDPTKVCKKLTICLKHAQHHESYQFLDLLNTFTTINSNEKCKICRIHIQLIERIYNRSKTLEQMQAVVDDFCGIFNCPYEYPCKQFYVKVGLEVREKVL----PRTVCQKLEFCRADEKKRIPLIKMVKPKTV 480 HSP 4 Score: 82.4185 bits (202), Expect = 4.427e-17 Identity = 54/182 (29.67%), Postives = 90/182 (49.45%), Query Frame = -3 Query: 184 NACKICEWIVSRYELMINDLVPFFQILVKSFYVCFIYDQEIATQCYNSIFSVGHEVFEAILHKEDPTKVCKLMNVCV---NGTEWNHFNYINLIMFVQQPQTTDKCKYCVDIITWNEKYINHNNMPRMDQSYLLDYCGIFKCPFNEDCVRFFSGPGYQVLKDVINKTDPIKVCQYLKVCPPK 720 N C+IC+ I++RY+ I+ + I + +C D C G E+ E+I ED K+C+++N+C+ + ++N + LI QQP TT +C CV + + E++IN P Q L+ YC IFK C FS + +K V+ ++D ++CQ L +C + Sbjct: 86 NKCEICQGIMTRYKSAIDMSLSTKHIQNRFLQICDSADVPFRKICATFFKGKGLEMIESISRSEDSMKICQIINLCLYEDSDDKYNVLTDLLLIDIFQQP-TTKQCTNCVASLDFIEQHINPKLNPEQVQHSLVSYCEIFKPNSQTFCKGLFSTNILKTIKGVLARSDTKEICQNLTLCDMR 266 HSP 5 Score: 75.485 bits (184), Expect = 7.511e-15 Identity = 59/256 (23.05%), Postives = 108/256 (42.19%), Query Frame = -3 Query: 154 IYFAGIFVLCYSFVQAGNTWISENVKSFDKPVQ--------QPKKDLSPESSAIK----------DSNACKICEWIVSRYELMINDLVPFFQILVKSFYVCFIYDQEIATQCYNSIFSVGHEVFEAILHKEDPTKVCKLMNVCVNGTEWNHFNYINLIMFVQQPQTTDKCKYCVDIITWNEKYINHNNMPRMDQSYLLDYCGIFKCPFNEDCVRFFSGPGYQVLKDVINKTDPIKVCQYLKVCPPKKSVKTFQNFL 867 IY A + LC +F Q + + + + P + Q K+ E++ + + C+ C ++ E N+ +I K C I+ Q+ A C S G E+ E+IL KE+P KVC+ ++ C + L +F ++ + D CK C + + + IN + P + Q ++ C I+K CV F++ G+ V+K V+ + +C+ + C ++ FL Sbjct: 521 IYNATVKNLCITFYQGKGLEVINAILASESPRKICQLINLCQSDKERRQENNFLDLLLIHFHRKPAPDHCQSCITMIKFEEKNFNNSKSAVEIQGKLLEYCSIFQQKFANICVEYFNSTGFEIIESILKKENPKKVCEKLHYCHQRNSQGEESQDLLTLFYRKEKDED-CKLCKKRVEFYKISINKSLNPAVIQQKMIAGCAIYKLSLKTLCVFFYNTAGFDVIKAVLTNGESTTICKLMDFCLVDSEIEGSHQFL 775 HSP 6 Score: 63.1586 bits (152), Expect = 1.025e-10 Identity = 52/212 (24.53%), Postives = 86/212 (40.57%), Query Frame = -3 Query: 136 DLSPESSAIKDSNACKICEWIVSRYELMINDLVPFFQILVKSFYVCFIYDQEIATQCYNSIFSVGHEVFEAILHKEDPTKVCKLMNVCVNGTEWNHFNYINLIMFVQQPQTTDK-----CKYCVDIITWNEKYINHNNMPRMDQSYLLDYCGIFKCPFNEDCVRFFSGPGYQVLKDVINKTDPIKVCQYLKVCPPKKSVKTFQNFLPKMIFQ 756 DL + I + CKIC + E + N Q+ C I++ C VG EV E +L P VC+ + C + I LI V+ P+T + CK C+ I+ E +N + Q+ ++ C I+ C+ F+ G G +V+ ++ P K+CQ + +C K + NFL ++ Sbjct: 378 DLLNTFTTINSNEKCKICRIHIQLIERIYNRSKTLEQMQAVVDDFCGIFNCPYEYPCKQFYVKVGLEVREKVL----PRTVCQKLEFC----RADEKKRIPLIKMVK-PKTVARHHNKGCKSCMWIVKRYENIVNKSLSAEYIQTKVIGLCDIYNATVKNLCITFYQGKGLEVINAILASESPRKICQLINLCQSDKERRQENNFLDLLLIH 580 HSP 7 Score: 62.7734 bits (151), Expect = 1.273e-10 Identity = 32/123 (26.02%), Postives = 60/123 (48.78%), Query Frame = -3 Query: 193 EVFEAILHKEDPTKVCKLMNVC-VNGTEWNHFNYINLIMFVQQPQTTDKCKYCVDIITWNEKYINHNNMPRMDQSYLLDYCGIFKCPFNEDCVRFFSGPGYQVLKDVINKTDPIKVCQYLKVC 558 + + +L + D ++C+ + +C + + N IN+ + KC C ++I E +N Q+ +L C +F P + C++F+ G G +V+K V+ DP KVC+ L +C Sbjct: 242 KTIKGVLARSDTKEICQNLTLCDMRVVDPNTLEVINMSEVFDEISVNQKCNLCKNMIKLLEISVNKTLNATNIQNRVLYACTVFTSPAKDKCIKFYQGLGLEVIKSVLVDEDPTKVCKKLTIC 364
BLAST of SMED30012451 vs. Planmine SMEST
Match: SMESG000043279.1 (SMESG000043279.1) HSP 1 Score: 50.447 bits (119), Expect = 2.414e-7 Identity = 42/176 (23.86%), Postives = 72/176 (40.91%), Query Frame = -3 Query: 187 CKICEWIVSRYELMINDLVPFFQILVKSFYVCFIYDQEIATQCYNSIFSVGHEVFEAILHKEDPTKVCKLMNVCVNGTEWNHFNYINLIMFVQQPQTTDKCKYCVDIITWNEKYINHNNMPRMDQSYLLDYCGIFKCPFNEDCVRFFSGPGYQVLKDVINKTDPIKVCQYLKVCPP 714 C CE +V I+ + QIL VCF++ + I +C + + G ++ E++L E T VC+ + C + I + +C C +I W E + + ++ L +C ++ P DC + S Q + D I+ + CQYL CP Sbjct: 22 CDTCENLVDYIGNTIDKSLSAIQILNTLIDVCFVFKRIIHEKCCSYFYWKGMDIVESMLKNETSTFVCEKIIQCTRNVNIHSIVSI-----------SSRCSQCKMVIKWLENSLRTDGPITEMKNTLNKFCHLWTEP--RDCRQLISTANIQAVFDGIS---SVIACQYLSFCPS 181 The following BLAST results are available for this feature:
BLAST of SMED30012451 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 2
BLAST of SMED30012451 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of SMED30012451 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of SMED30012451 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 3
BLAST of SMED30012451 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of SMED30012451 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of SMED30012451 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 2
BLAST of SMED30012451 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of SMED30012451 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 2
BLAST of SMED30012451 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of SMED30012451 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of SMED30012451 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 1
BLAST of SMED30012451 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 1
BLAST of SMED30012451 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 3
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30012451 ID=SMED30012451|Name=SMED30012451|organism=Schmidtea mediterranea sexual|type=transcript|length=950bpback to top protein sequence of SMED30012451-orf-1 >SMED30012451-orf-1 ID=SMED30012451-orf-1|Name=SMED30012451-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=248bp MRSIYFAGIFVLCYSFVQAGNTWISENVKSFDKPVQQPKKDLSPESSAIKback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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