C2H2-type domain-containing protein

Overview
NameC2H2-type domain-containing protein
Smed IDSMED30012385
Length (bp)869
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of C2H2-type domain-containing protein (SMED30012385) t-SNE clustered cells

Violin plots show distribution of expression levels for C2H2-type domain-containing protein (SMED30012385) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of C2H2-type domain-containing protein (SMED30012385) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for C2H2-type domain-containing protein (SMED30012385) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020




SMED30012385

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 2

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
pharynxSMED30012385h1SMcG0004964 dd_Smed_v4_17695_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
muscle cellSMED30012385h1SMcG0004964 dd_Smed_v4_17695_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
BLAST of C2H2-type domain-containing protein vs. Ensembl Celegans
Match: ZC53.4 (pep chromosome:WBcel235:X:1925750:1937689:1 gene:WBGene00022511.1 transcript:ZC53.4.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ZC53.4)

HSP 1 Score: 91.6633 bits (226), Expect = 2.125e-30
Identity = 59/154 (38.31%), Postives = 89/154 (57.79%), Query Frame = 1
Query:  388 IQKLD--IFLEVDLEYPKEIHEKTIYFPFAPVKTIIKYEELSP*QKQ*NVEKKKSSTKLVCNQ-YGKEKYLCHYRNL*FYVRYEMKLKQVHNIISFNQKPFMSSFIQDNIKNRKETTSKQDEF*KMLYKLLNNSVFGKTMENID*YVNITLLTN 840
            ++KLD     EVDLEYPKEIH +    P  P                 NV+      K +CN  + +EKY+ HY NL   ++  +KLK++H II+F +  +++S+I+ N   RK   + +++F K  YKL+NNSVFGKTMEN+   V++ L+T+
Sbjct: 1255 LKKLDRGCIFEVDLEYPKEIHSRHNDSPLCPE----------------NVKIDNHVIKKLCNTLFDREKYVIHYENLLQCLQLGLKLKKIHRIITFKESNWLASYIEMNTNPRK---NAKNDFEKDFYKLMNNSVFGKTMENVRERVDVRLVTD 1389          

HSP 2 Score: 59.3066 bits (142), Expect = 2.125e-30
Identity = 37/112 (33.04%), Postives = 56/112 (50.00%), Query Frame = 3
Query:    6 YISTPS*SWDLMLNNSGVVLDLLTDVDMFNVIKNNIRGGVSSVTGNRLITSWNEKYLYDKYSEPITEFKDEKEYQEAMKCLNDKSDLIYIDATALYSGIMTQVLPFKNFKWE 341
            Y ++P  +WD ML  + V LD L DV+M+ +I+  IRGG+  V   +  +  N KY  +   + +T F                  L+Y+DA  LY   M Q+LP  +FK+E
Sbjct: 1139 YFTSPGLAWDAMLKKTKVELDKLHDVEMYLMIEKGIRGGI--VNAVKRYSKVNNKYTKNFNEKQLTNF------------------LLYLDANNLYGWAMCQMLPTGDFKFE 1230          
BLAST of C2H2-type domain-containing protein vs. Ensembl Celegans
Match: H12I13.3 (pep chromosome:WBcel235:II:6071386:6073251:-1 gene:WBGene00019192.1 transcript:H12I13.3.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:H12I13.3)

HSP 1 Score: 58.5362 bits (140), Expect = 1.536e-9
Identity = 33/77 (42.86%), Postives = 50/77 (64.94%), Query Frame = 1
Query:  625 YEMKLKQVHNIISFNQKPFMSSFIQDNIKNRKETTSKQDEF*KMLYKLLNNSVFGKTMENID*YVNITLLTNSRQDL 855
            + +KLK++H I++F +  +M  +I  N   RK+    +++F K  +KL+NNSVFGKTMENI   VNI L+T+    L
Sbjct:  298 HGLKLKKIHRILTFKESAWMKKYIMLNTNLRKQA---KNDFEKDFFKLMNNSVFGKTMENIRNRVNIRLVTDDDSAL 371          
BLAST of C2H2-type domain-containing protein vs. TrEMBL
Match: A0A158P4L3 (Uncharacterized protein OS=Tetranychus urticae OX=32264 PE=4 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.389e-36
Identity = 64/161 (39.75%), Postives = 97/161 (60.25%), Query Frame = 1
Query:  391 QKLDIFLEVDLEYPKEIHEKTIYFPFAPVKTIIKYEELSP*QKQ*------NVEKKKSSTKLVCNQYGKEKYLCHYRNL*FYVRYEMKLKQVHNIISFNQKPFMSSFIQDNIKNRKETTSKQDEF*KMLYKLLNNSVFGKTMENID*YVNITLLTNSRQDL 855
            +K    LEVDL+YP+ +H++   +P AP K I+  ++LS  QK+       N  K+  + KLV N   K+KY+ H RNL FY+   + LK+VH II F Q+P++ S+IQ   +NRK  TS    F K  +KL+ NS++GK++E+   +  + + TN RQ L
Sbjct:  345 RKTGYILEVDLDYPESLHDEHNDYPLAPEKIIVDNDQLSNFQKEIVIMLEENGVKRYKTKKLVPNLMNKKKYVLHERNLKFYIEKGLILKKVHRIIKFEQEPWLRSYIQMCTENRKRATS---SFEKDFWKLMVNSLYGKSIEDKRKHSKVKVATNGRQAL 502          

HSP 2 Score: 78.9518 bits (193), Expect = 1.389e-36
Identity = 47/136 (34.56%), Postives = 74/136 (54.41%), Query Frame = 3
Query:    3 NYISTPS*SWDLMLNNSGVVLDLLTDVDMFNVIKNNIRGGVSSVTGNRLITSWNEKYLYDKYSEPITEFKDEKEYQEAMKCLNDKSDLIYIDATALYSGIMTQVLPFKNFKW--ENVTYEIKNEILSTSKDSKIGY 404
            +Y STP  +WD  L  +G+ LDLLTD+DM  +I+N IRGG+S V                +Y++   EF +E   +E        S + Y+D   LY   ++ +LP +NF W  +N+   + +EIL+T+++ K GY
Sbjct:  234 HYFSTPGLTWDAALKFTGMKLDLLTDIDMILMIENAIRGGISCVMS--------------RYAKANNEFTEEYNSEEPT------SFIAYLDVNNLYGYALSDILPCRNFAWVPQNMVDGVIDEILNTNQERKTGY 349          
BLAST of C2H2-type domain-containing protein vs. TrEMBL
Match: A0A158P5L8 (C2H2-type domain-containing protein OS=Tetranychus urticae OX=32264 PE=4 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.231e-36
Identity = 64/161 (39.75%), Postives = 97/161 (60.25%), Query Frame = 1
Query:  391 QKLDIFLEVDLEYPKEIHEKTIYFPFAPVKTIIKYEELSP*QKQ*------NVEKKKSSTKLVCNQYGKEKYLCHYRNL*FYVRYEMKLKQVHNIISFNQKPFMSSFIQDNIKNRKETTSKQDEF*KMLYKLLNNSVFGKTMENID*YVNITLLTNSRQDL 855
            +K    LEVDL+YP+ +H++   +P AP K I+  ++LS  QK+       N  K+  + KLV N   K+KY+ H RNL FY+   + LK+VH II F Q+P++ S+IQ   +NRK  TS    F K  +KL+ NS++GK++E+   +  + + TN RQ L
Sbjct:  810 RKTGYILEVDLDYPESLHDEHNDYPLAPEKIIVDNDQLSNFQKEIVSMLEENGVKRYKTKKLVPNLMNKKKYVLHERNLKFYIEKGLILKKVHRIIKFEQEPWLRSYIQMCTENRKRATS---SFEKDFWKLMVNSLYGKSIEDKRKHSKVKVATNGRQAL 967          

HSP 2 Score: 77.7962 bits (190), Expect = 2.231e-36
Identity = 47/136 (34.56%), Postives = 73/136 (53.68%), Query Frame = 3
Query:    3 NYISTPS*SWDLMLNNSGVVLDLLTDVDMFNVIKNNIRGGVSSVTGNRLITSWNEKYLYDKYSEPITEFKDEKEYQEAMKCLNDKSDLIYIDATALYSGIMTQVLPFKNFKW--ENVTYEIKNEILSTSKDSKIGY 404
            +Y STP  +WD  L  +G+ LDLLTD+DM  +I+N IRGG+S V                +Y++   EF +E   +E        S + Y+D   LY   ++ +LP +NF W  +N    + +EIL+T+++ K GY
Sbjct:  699 HYFSTPGLTWDAALKFTGMKLDLLTDIDMILMIENAIRGGISCVMS--------------RYAKANNEFTEEYNSEEPT------SFIAYLDVNNLYGYALSDILPCRNFAWVPQNEVDGVIDEILNTNQERKTGY 814          
BLAST of C2H2-type domain-containing protein vs. TrEMBL
Match: A0A087TYZ6 (Uncharacterized protein (Fragment) OS=Stegodyphus mimosarum OX=407821 GN=X975_09790 PE=4 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 5.686e-35
Identity = 67/153 (43.79%), Postives = 96/153 (62.75%), Query Frame = 1
Query:  409 LEVDLEYPKEIHEKTIYFPFAPVKTIIKYEELSP*QKQ*NVEKKKSST------KLVCNQYGKEKYLCHYRNL*FYVRYEMKLKQVHNIISFNQKPFMSSFIQDNIKNRKETTSKQDEF*KMLYKLLNNSVFGKTMENID*YVNITLLTNSRQ 849
            LEVDLEYP+E+H+    +P AP K  I  EELSP     ++ +K+  T      KLV N   K+ Y+ HYRNL +Y+   +KL +VH I+ F QKP++S +IQ N + RK+  +    F K  +KL+NNSV+GKTMEN+   V+I ++ N R+
Sbjct:  229 LEVDLEYPQELHDLHNEYPLAPEKCCITTEELSPYSL--SLLQKEGRTNPGNIQKLVPNLKKKQNYVLHYRNLKYYLEKGLKLTKVHKILKFLQKPWLSPYIQFNTEERKKVNTT---FEKNFFKLMNNSVYGKTMENVRNRVDIQIVNNVRK 376          

HSP 2 Score: 67.3958 bits (163), Expect = 5.686e-35
Identity = 45/134 (33.58%), Postives = 68/134 (50.75%), Query Frame = 3
Query:    9 ISTPS*SWDLMLNNSGVVLDLLTDVDMFNVIKNNIRGGVSSVTGNRLITSWNEKYL--YDKYSEPITEFKDEKEYQEAMKCLNDKSDLIYIDATALYSGIMTQVLPFKNFKWENVTYEIKNEILSTSKDSKIGY 404
            +++P  +W   L  +G+ L+LLTD+DM   I+  IRGG+S ++        N KYL  YD  S+P                    S +IY+DA  LY   M+Q LP+  F+W + +      ILS+S+D  +GY
Sbjct:  116 MTSPGLAWQACLKMTGIELELLTDLDMHLFIERGIRGGISMISHR--WAEANNKYLPHYDP-SKP-------------------SSYIIYLDANNLYGWAMSQPLPYGGFQWVSPSAIDIEAILSSSEDGAVGY 227          
BLAST of C2H2-type domain-containing protein vs. TrEMBL
Match: A0A4Y2QVZ0 (Uncharacterized protein OS=Araneus ventricosus OX=182803 GN=AVEN_149573_1 PE=4 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 3.173e-34
Identity = 69/150 (46.00%), Postives = 92/150 (61.33%), Query Frame = 1
Query:  409 LEVDLEYPKEIHEKTIYFPFAPVKTIIKYEELSP*QKQ*----NVEKKKSSTKLVCNQYGKEKYLCHYRNL*FYVRYEMKLKQVHNIISFNQKPFMSSFIQDNIKNRKETTSKQDEF*KMLYKLLNNSVFGKTMENID*YVNITLLTNSR 846
            LEVDLEYP E+H     +P AP K ++   E S   K+     N+ K K S KL+ N   KEKY+ HYRNL FYV+  +K+ +VH I+ F Q  ++ ++I  N   RK  TS    F K L+KLLNN+VFGKTMEN+   VNI L+T+ +
Sbjct:  875 LEVDLEYPSELHHLHNCYPLAPEKVLVSPSEYSDYTKELLYKLNLSKSKPSEKLIPNLRNKEKYVVHYRNLKFYVQLGLKVTKVHRILKFKQSAWLKNYIDFNTDQRKRATSN---FEKDLFKLLNNAVFGKTMENLRNRVNIDLVTDEK 1021          

HSP 2 Score: 57.7658 bits (138), Expect = 3.173e-34
Identity = 47/136 (34.56%), Postives = 62/136 (45.59%), Query Frame = 3
Query:    9 ISTPS*SWDLMLNNSGVVLDLLTDVDMFNVIKNNIRGGVSSVTGNRLITSWNEKYL--YDKYSEPITEFKDEKEYQEAMKCLNDKSDLIYIDATALYSGIMTQVLPFKNFKW--ENVTYEIKNEILSTSKDSKIGY 404
             + P  +W   L  +GV L+LLTD+DM   I+  IRGGV+ ++      S N  YL  YD    P T                  S ++Y DA  LY   M+Q LP  +F W  ENV Y      L+   DS +GY
Sbjct:  766 FTAPGLAWQACLRMTGVELELLTDIDMHLFIEKGIRGGVAMISHR--FASANNPYLPTYD----PDTP----------------NSYIMYWDANNLYGWAMSQNLPTHDFSWTEENVDY------LNIPDDSDVGY 873          
BLAST of C2H2-type domain-containing protein vs. TrEMBL
Match: A0A087TB85 (Protein NYNRIN (Fragment) OS=Stegodyphus mimosarum OX=407821 GN=X975_21590 PE=4 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 7.767e-34
Identity = 67/153 (43.79%), Postives = 96/153 (62.75%), Query Frame = 1
Query:  409 LEVDLEYPKEIHEKTIYFPFAPVKTIIKYEELSP*QKQ*NVEKKKSST------KLVCNQYGKEKYLCHYRNL*FYVRYEMKLKQVHNIISFNQKPFMSSFIQDNIKNRKETTSKQDEF*KMLYKLLNNSVFGKTMENID*YVNITLLTNSRQ 849
            LEVDLEYP+E+H+    +P AP K  I  EELSP     ++ +K+  T      KLV N   K+ Y+ HYRNL +Y+   +KL +VH I+ F QKP++S +IQ N + RK+  +    F K  +KL+NNSV+GKTMEN+   V+I ++ N R+
Sbjct:  597 LEVDLEYPQELHDLHNEYPLAPEKCCITTEELSPYSL--SLLQKEGRTNPGNIQKLVPNLKKKQNYVLHYRNLKYYLEKGLKLTKVHKILKFLQKPWLSPYIQFNTEERKKVNTT---FEKNFFKLMNNSVYGKTMENVRNRVDIQIVNNVRK 744          

HSP 2 Score: 63.5438 bits (153), Expect = 7.767e-34
Identity = 45/136 (33.09%), Postives = 70/136 (51.47%), Query Frame = 3
Query:    9 ISTPS*SWDLMLNNSGVVLDLLTDVDMFNVIKNNIRGGVSSVTGNRLITSWNEKYL--YDKYSEPITEFKDEKEYQEAMKCLNDKSDLIYIDATALYSGIMTQVLPFKNFKWENVTYEIKNEILSTSKDSKIGYFF 410
            +++P  +W   L  +G+ L+LLTD+DM   I+  IRGG+S ++ +R   + N KYL  YD  S+P                    S +IY+DA  LY   M+Q LP+  F+W + +      ILS+ +D  +GY  
Sbjct:  484 MTSPRLAWQACLKMNGIELELLTDLDMHLFIERGIRGGISMIS-HRWAEA-NNKYLPHYDP-SKP-------------------SSYIIYLDANNLYGWAMSQPLPYGGFQWVSPSAIDIEAILSSPEDGAVGYIL 597          
BLAST of C2H2-type domain-containing protein vs. Ensembl Nematostella
Match: EDO46109 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RR56])

HSP 1 Score: 81.2629 bits (199), Expect = 4.963e-25
Identity = 51/147 (34.69%), Postives = 79/147 (53.74%), Query Frame = 1
Query:  409 LEVDLEYPKEIHEKTIYFPFAPVKTIIKYEELSP*QKQ*NVEKKKSSTKLVCNQYGKEKYLCHYRNL*FYVRYEMKLKQVHNIISFNQKPFMSSFIQDNIKNRKETTSKQDEF*KMLYKLLNNSVFGKTMENID*YVNITLLTNSRQ 849
            +EVD+ YP+ +H+    +P AP    IK  ++                KL+ N   K KY+ H+  L  Y    +K+ +VH  I+F +  ++ ++I  N   R + T   ++F K  +KL+NNSVFGKTMENI   V+I L+TN +Q
Sbjct: 1260 VEVDMAYPRHLHDSHDDYPLAPES--IKINKVG---------------KLIPNLNDKTKYVVHHETLKLYESLGLKVTKVHRGITFEESGWLKTYIDLNTSLRAKAT---NDFEKDFFKLMNNSVFGKTMENIRNRVDIRLITNEKQ 1386          

HSP 2 Score: 50.447 bits (119), Expect = 4.963e-25
Identity = 33/111 (29.73%), Postives = 50/111 (45.05%), Query Frame = 3
Query:    6 YISTPS*SWDLMLNNSGVVLDLLTDVDMFNVIKNNIRGGVSSVTGNRLITSWNEKYLYDKYSEPITEFKDEKEYQEAMKCLNDKSDLIYIDATALYSGIMTQVLPFKNFKW 338
            Y + P  +WD  L  + V L+LLTD DM  + +  IRGGVS ++     +  N  Y+              +EY   +        + Y+DA  LY   M++ LP   F+W
Sbjct: 1154 YYTAPGLAWDAALKITRVELELLTDCDMLLMFEEGIRGGVSMISTRH--SKANNPYM--------------REYDPNLP----TKYITYLDANNLYGWAMSKPLPTHGFRW 1244          
BLAST of C2H2-type domain-containing protein vs. Planmine SMEST
Match: SMESG000009121.1 (SMESG000009121.1)

HSP 1 Score: 235.343 bits (599), Expect = 3.085e-76
Identity = 118/142 (83.10%), Postives = 128/142 (90.14%), Query Frame = 1
Query:  385 KIQKLDIFLEVDLEYPKEIHEKTIYFPFAPVKTIIKYEELSP*QKQ*NVEKKKSSTKLVCNQYGKEKYLCHYRNL*FYVRYEMKLKQVHNIISFNQKPFMSSFIQDNIKNRKETTSKQDEF*KMLYKLLNNSVFGKTMENID 810
            K  K+  FLEVDLEYPKE H+KTIYFPFAPVKTIIKYEELSP QKQ ++EKKKSSTKL+CNQY KEKYLCHY+NL FY+R  MKLKQVHNIISFNQKPFM+SFIQDNIKNRKE TSK+DEF KM+YKLLNNSVFGKTME ID
Sbjct:  154 KDSKIGYFLEVDLEYPKETHDKTIYFPFAPVKTIIKYEELSPWQKQRSLEKKKSSTKLLCNQYDKEKYLCHYKNLQFYLRRGMKLKQVHNIISFNQKPFMASFIQDNIKNRKEATSKKDEFGKMVYKLLNNSVFGKTMETID 295          

HSP 2 Score: 111.309 bits (277), Expect = 1.957e-28
Identity = 63/124 (50.81%), Postives = 71/124 (57.26%), Query Frame = 3
Query:  117 GGVSSVTGNRLITSWNEKYLYDKYSEPIT---EFKDEKEYQEAMKCLNDKSDLIYIDATALYSGIMTQVLPFKNFKWENVTYEIKNEILSTSKDSKIGYFFRS*FGISKRNSRKDNLFSICASK 479
            G  + +T NR          Y    +P+    E +++ EY E +KCLN K DLIYID TALYSGIMTQ LPFKNFKWENVT EI NEILST KDSKIGYF        K    K   F     K
Sbjct:   72 GDAAKMTFNR----------YGNLVQPLAVVYEIENDDEYNEVLKCLNKKCDLIYIDTTALYSGIMTQYLPFKNFKWENVTDEIINEILSTPKDSKIGYFLEVDLEYPKETHDKTIYFPFAPVK 185          
BLAST of C2H2-type domain-containing protein vs. Planmine SMEST
Match: SMESG000031227.1 (SMESG000031227.1)

HSP 1 Score: 168.318 bits (425), Expect = 1.616e-64
Identity = 89/135 (65.93%), Postives = 99/135 (73.33%), Query Frame = 3
Query:    3 NYISTPS*SWDLMLNNSGVVLDLLTDVDMFNVIKNNIRGGVSSVTGNRLITSWNEKYLYDKYSEPITEFKDEKEYQEAMKCLNDKSDLIYIDATALYSGIMTQVLPFKNFKWENVTYEIKNEILSTSKDSKIGYF 407
            NYISTPS S DL+L  SGVVLDLLTDV+MFN+  NNIRGGVSSV GN LITS NEK+LY+KY E + + KDE E+++ MKCL DKSDLIYIDATALYSGIM Q LPF NFK E              K  KIGYF
Sbjct:  237 NYISTPSLSGDLILKKSGVVLDLLTDVNMFNMKNNNIRGGVSSVMGNTLITSRNEKFLYNKYPEDLMKIKDEDEFEQVMKCLKDKSDLIYIDATALYSGIMKQYLPFANFKREE------------PKGFKIGYF 359          

HSP 2 Score: 97.0561 bits (240), Expect = 1.616e-64
Identity = 47/77 (61.04%), Postives = 61/77 (79.22%), Query Frame = 1
Query:  394 KLDIFLEVDLEYPKEIHEKTIYFPFAPVKTIIKYEELSP*QKQ*NVEKKKSSTKLVCNQYGKEKYLCHYRNL*FYVR 624
            K+  F+EVDLEY +EIH+KT+YFP AP+KT IK EE+S  QK+ N+EKK S+ KL+C Q  KEKY+C+YR L FY+R
Sbjct:  355 KIGYFVEVDLEYTEEIHDKTMYFPLAPIKTKIKNEEISNWQKERNLEKKDSAVKLLCTQNNKEKYMCNYRTLQFYLR 431          
BLAST of C2H2-type domain-containing protein vs. Planmine SMEST
Match: SMESG000068485.1 (SMESG000068485.1)

HSP 1 Score: 205.682 bits (522), Expect = 5.584e-63
Identity = 101/136 (74.26%), Postives = 115/136 (84.56%), Query Frame = 3
Query:    3 NYISTPS*SWDLMLNNSGVVLDLLTDVDMFNVIKNNIRGGVSSVTGNRLITSWNEKYLYDKYSEPITEFKDEKEYQEAMKCLNDKSDLIYIDATALYSGIMTQVLPFKNFKWENVTYEIKNEILSTSKDSKIGYFF 410
            NYISTPS SWDLML  S VVL+LLTDVDMFN+IKNNIR G+SSV GNRLI SWNEK++Y+KYSE IT  KDE+EY++ +KCLN+K DLIYIDATALYSGI+TQ LPF NF WE  T EI ++ILST KDSKIGYF 
Sbjct:  297 NYISTPSLSWDLMLKKSDVVLNLLTDVDMFNMIKNNIREGLSSVMGNRLINSWNEKFIYNKYSEDITPIKDEEEYEQVLKCLNNKFDLIYIDATALYSGIVTQYLPFANFIWEEPTSEIMDKILSTKKDSKIGYFL 432          

HSP 2 Score: 48.9062 bits (115), Expect = 2.185e-6
Identity = 21/33 (63.64%), Postives = 28/33 (84.85%), Query Frame = 1
Query:  382 QKIQKLDIFLEVDLEYPKEIHEKTIYFPFAPVK 480
            +K  K+  FLEVDLE+P+EIH+KT+YFP AP+K
Sbjct:  423 KKDSKIGYFLEVDLEHPEEIHDKTMYFPLAPIK 455          
BLAST of C2H2-type domain-containing protein vs. Planmine SMEST
Match: SMESG000010659.1 (SMESG000010659.1)

HSP 1 Score: 159.458 bits (402), Expect = 5.281e-47
Identity = 84/157 (53.50%), Postives = 109/157 (69.43%), Query Frame = 1
Query:  394 KLDIFLEVDLEYPKEIHEKTIYFPFAPVKTIIKYEELSP*QKQ*NVEKKKSSTKLVCNQYGKEKYLCHYRNL*FYVRYEMKLKQVHNIISFNQKPFMSSFIQDNIKNRKETTSKQDEF*KMLYKLLNNSVFGKTMENID*YVNITLLTNSRQDLIKY 864
            K+  F+EVDL+YPKEIH+KT YFPFA  K I+KY+ELSP QK  N ++  SS KL+C+Q+ K+ Y+ HYR L FY+R+ MK+K++HNIISF QKP+M  ++  NI NR      +  F   +YKLLNN+VFGKTME  D Y  I L T  + DL  Y
Sbjct:   31 KIGYFVEVDLKYPKEIHDKTKYFPFALHKRIVKYQELSPWQKTRNPQQDDSSEKLICDQHDKKYYMVHYRMLQFYIRHGMKIKRIHNIISFKQKPWMEPYLNGNITNRNIAKKNKQFFLDTIYKLLNNAVFGKTMEKQDKYRTIKLFT--KHDLDSY 185          

HSP 2 Score: 51.2174 bits (121), Expect = 2.597e-7
Identity = 28/59 (47.46%), Postives = 31/59 (52.54%), Query Frame = 3
Query:  303 MTQVLPFKNFKWENVTYEIKNEILSTSKDSKIGYFFRS*FGISKRNSRKDNLFSICASK 479
            MTQ LPFKNFKWE  T E+  +ILS  K+SKIGYF        K    K   F     K
Sbjct:    1 MTQYLPFKNFKWETPTDELLEKILSIPKESKIGYFVEVDLKYPKEIHDKTKYFPFALHK 59          
BLAST of C2H2-type domain-containing protein vs. Planmine SMEST
Match: SMESG000081498.1 (SMESG000081498.1)

HSP 1 Score: 131.339 bits (329), Expect = 5.583e-41
Identity = 72/139 (51.80%), Postives = 92/139 (66.19%), Query Frame = 1
Query:  394 KLDIFLEVDLEYPKEIHEKTIYFPFAPVKTIIKYEELSP*QKQ*NVEKKKSSTKLVCNQYGKEKYLCHYRNL*FYVRYEMKLKQVHNIISFNQKPFMSSFIQDNIKNRKETTSKQDEF*KMLYKLLNNSVFGKTMENID 810
            K +   ++DL+YPKEI+           KTI KYEELSP QK  N ++  SS KL+CNQ+ K+ YL HYR L FY+R+ MKLK+VHNIISF QKP+   +I  NI NR      +  F   ++KLLNN+VFGKTMEN+D
Sbjct:   70 KWETSTKLDLKYPKEIY-----------KTIAKYEELSPWQKSRNPQQDDSSEKLICNQHDKKYYLVHYRMLQFYLRHGMKLKRVHNIISFKQKPWKEPYINGNITNRNIAKKNKQSFLDTIFKLLNNAVFGKTMENLD 197          

HSP 2 Score: 55.0694 bits (131), Expect = 5.583e-41
Identity = 31/75 (41.33%), Postives = 45/75 (60.00%), Query Frame = 3
Query:  138 GNRLITSWNEKYLYDKY----SEPITEFKDEKEYQEAMKCLNDKSDLIYIDATALYSGIMTQVLPFKNFKWENVT 350
            G+R IT+ N +  ++      +EP  +  +  E  + ++ LN+ + + Y DATALY GIMTQ LPF NFKWE  T
Sbjct:    2 GSRKITTNNIQQFFNSRDPDCNEPFVQISNN-ELPDVLEKLNNPTQIKYFDATALYFGIMTQYLPFSNFKWETST 75          
The following BLAST results are available for this feature:
BLAST of C2H2-type domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of C2H2-type domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 2
Match NameE-valueIdentityDescription
ZC53.42.125e-3038.31pep chromosome:WBcel235:X:1925750:1937689:1 gene:W... [more]
H12I13.31.536e-942.86pep chromosome:WBcel235:II:6071386:6073251:-1 gene... [more]
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BLAST of C2H2-type domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of C2H2-type domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of C2H2-type domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of C2H2-type domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of C2H2-type domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of C2H2-type domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A158P4L31.389e-3639.75Uncharacterized protein OS=Tetranychus urticae OX=... [more]
A0A158P5L82.231e-3639.75C2H2-type domain-containing protein OS=Tetranychus... [more]
A0A087TYZ65.686e-3543.79Uncharacterized protein (Fragment) OS=Stegodyphus ... [more]
A0A4Y2QVZ03.173e-3446.00Uncharacterized protein OS=Araneus ventricosus OX=... [more]
A0A087TB857.767e-3443.79Protein NYNRIN (Fragment) OS=Stegodyphus mimosarum... [more]
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BLAST of C2H2-type domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of C2H2-type domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of C2H2-type domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of C2H2-type domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 1
Match NameE-valueIdentityDescription
EDO461094.963e-2534.69Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of C2H2-type domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of C2H2-type domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000009121.13.085e-7683.10SMESG000009121.1[more]
SMESG000031227.11.616e-6465.93SMESG000031227.1[more]
SMESG000068485.15.584e-6374.26SMESG000068485.1[more]
SMESG000010659.15.281e-4753.50SMESG000010659.1[more]
SMESG000081498.15.583e-4151.80SMESG000081498.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30012385 ID=SMED30012385|Name=C2H2-type domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=869bp
GTAATTATATTTCAACACCTTCATAATCTTGGGATTTGATGTTGAACAAT
AGTGGTGTTGTTTTAGATTTATTAACTGATGTTGACATGTTTAATGTTAT
AAAAAATAATATCCGTGGAGGAGTTAGTTCTGTAACGGGAAATAGATTGA
TTACTTCTTGGAATGAAAAATATCTTTATGATAAATATTCCGAACCAATA
ACAGAATTTAAGGATGAAAAAGAATATCAAGAAGCTATGAAGTGTTTGAA
TGATAAATCTGATTTAATTTACATTGACGCAACCGCATTGTATTCAGGAA
TAATGACACAAGTTTTACCATTTAAAAATTTTAAATGGGAAAATGTTACT
TATGAAATTAAAAATGAAATATTGTCAACATCAAAAGATTCAAAAATTGG
ATATTTTTTTAGAAGTTGATTTGGAATATCCAAAAGAAATTCACGAAAAG
ACAATTTATTTTCCATTTGCGCCAGTAAAAACAATAATAAAATATGAAGA
ATTGTCTCCATAGCAAAAACAATGAAATGTAGAAAAGAAAAAATCTTCAA
CTAAATTAGTATGTAATCAATATGGTAAAGAAAAATATCTTTGTCATTAT
AGAAATTTATAATTTTATGTTCGTTATGAAATGAAATTGAAACAAGTTCA
TAATATAATTTCTTTCAATCAAAAACCATTCATGTCAAGTTTTATCCAAG
ATAATATTAAAAACAGAAAAGAAACAACATCAAAACAAGATGAATTTTGA
AAAATGTTGTACAAACTTTTAAATAATTCAGTCTTTGGTAAAACAATGGA
AAATATTGACTAGTATGTAAATATAACTTTATTAACAAATAGTCGTCAAG
ATTTAATAAAATATTCTAA
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protein sequence of SMED30012385-orf-1

>SMED30012385-orf-1 ID=SMED30012385-orf-1|Name=SMED30012385-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=127bp
MLNNSGVVLDLLTDVDMFNVIKNNIRGGVSSVTGNRLITSWNEKYLYDKY
SEPITEFKDEKEYQEAMKCLNDKSDLIYIDATALYSGIMTQVLPFKNFKW
ENVTYEIKNEILSTSKDSKIGYFFRS*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000016pharynx
PLANA:0000101muscle cell
Vocabulary: molecular function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: biological process
TermDefinition
GO:0015074DNA integration