C2H2-type domain-containing protein
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30012385 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 2
Homology
BLAST of C2H2-type domain-containing protein vs. Ensembl Celegans
Match: ZC53.4 (pep chromosome:WBcel235:X:1925750:1937689:1 gene:WBGene00022511.1 transcript:ZC53.4.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ZC53.4) HSP 1 Score: 91.6633 bits (226), Expect = 2.125e-30 Identity = 59/154 (38.31%), Postives = 89/154 (57.79%), Query Frame = 1 Query: 388 IQKLD--IFLEVDLEYPKEIHEKTIYFPFAPVKTIIKYEELSP*QKQ*NVEKKKSSTKLVCNQ-YGKEKYLCHYRNL*FYVRYEMKLKQVHNIISFNQKPFMSSFIQDNIKNRKETTSKQDEF*KMLYKLLNNSVFGKTMENID*YVNITLLTN 840 ++KLD EVDLEYPKEIH + P P NV+ K +CN + +EKY+ HY NL ++ +KLK++H II+F + +++S+I+ N RK + +++F K YKL+NNSVFGKTMEN+ V++ L+T+ Sbjct: 1255 LKKLDRGCIFEVDLEYPKEIHSRHNDSPLCPE----------------NVKIDNHVIKKLCNTLFDREKYVIHYENLLQCLQLGLKLKKIHRIITFKESNWLASYIEMNTNPRK---NAKNDFEKDFYKLMNNSVFGKTMENVRERVDVRLVTD 1389 HSP 2 Score: 59.3066 bits (142), Expect = 2.125e-30 Identity = 37/112 (33.04%), Postives = 56/112 (50.00%), Query Frame = 3 Query: 6 YISTPS*SWDLMLNNSGVVLDLLTDVDMFNVIKNNIRGGVSSVTGNRLITSWNEKYLYDKYSEPITEFKDEKEYQEAMKCLNDKSDLIYIDATALYSGIMTQVLPFKNFKWE 341 Y ++P +WD ML + V LD L DV+M+ +I+ IRGG+ V + + N KY + + +T F L+Y+DA LY M Q+LP +FK+E Sbjct: 1139 YFTSPGLAWDAMLKKTKVELDKLHDVEMYLMIEKGIRGGI--VNAVKRYSKVNNKYTKNFNEKQLTNF------------------LLYLDANNLYGWAMCQMLPTGDFKFE 1230
BLAST of C2H2-type domain-containing protein vs. Ensembl Celegans
Match: H12I13.3 (pep chromosome:WBcel235:II:6071386:6073251:-1 gene:WBGene00019192.1 transcript:H12I13.3.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:H12I13.3) HSP 1 Score: 58.5362 bits (140), Expect = 1.536e-9 Identity = 33/77 (42.86%), Postives = 50/77 (64.94%), Query Frame = 1 Query: 625 YEMKLKQVHNIISFNQKPFMSSFIQDNIKNRKETTSKQDEF*KMLYKLLNNSVFGKTMENID*YVNITLLTNSRQDL 855 + +KLK++H I++F + +M +I N RK+ +++F K +KL+NNSVFGKTMENI VNI L+T+ L Sbjct: 298 HGLKLKKIHRILTFKESAWMKKYIMLNTNLRKQA---KNDFEKDFFKLMNNSVFGKTMENIRNRVNIRLVTDDDSAL 371
BLAST of C2H2-type domain-containing protein vs. TrEMBL
Match: A0A158P4L3 (Uncharacterized protein OS=Tetranychus urticae OX=32264 PE=4 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 1.389e-36 Identity = 64/161 (39.75%), Postives = 97/161 (60.25%), Query Frame = 1 Query: 391 QKLDIFLEVDLEYPKEIHEKTIYFPFAPVKTIIKYEELSP*QKQ*------NVEKKKSSTKLVCNQYGKEKYLCHYRNL*FYVRYEMKLKQVHNIISFNQKPFMSSFIQDNIKNRKETTSKQDEF*KMLYKLLNNSVFGKTMENID*YVNITLLTNSRQDL 855 +K LEVDL+YP+ +H++ +P AP K I+ ++LS QK+ N K+ + KLV N K+KY+ H RNL FY+ + LK+VH II F Q+P++ S+IQ +NRK TS F K +KL+ NS++GK++E+ + + + TN RQ L Sbjct: 345 RKTGYILEVDLDYPESLHDEHNDYPLAPEKIIVDNDQLSNFQKEIVIMLEENGVKRYKTKKLVPNLMNKKKYVLHERNLKFYIEKGLILKKVHRIIKFEQEPWLRSYIQMCTENRKRATS---SFEKDFWKLMVNSLYGKSIEDKRKHSKVKVATNGRQAL 502 HSP 2 Score: 78.9518 bits (193), Expect = 1.389e-36 Identity = 47/136 (34.56%), Postives = 74/136 (54.41%), Query Frame = 3 Query: 3 NYISTPS*SWDLMLNNSGVVLDLLTDVDMFNVIKNNIRGGVSSVTGNRLITSWNEKYLYDKYSEPITEFKDEKEYQEAMKCLNDKSDLIYIDATALYSGIMTQVLPFKNFKW--ENVTYEIKNEILSTSKDSKIGY 404 +Y STP +WD L +G+ LDLLTD+DM +I+N IRGG+S V +Y++ EF +E +E S + Y+D LY ++ +LP +NF W +N+ + +EIL+T+++ K GY Sbjct: 234 HYFSTPGLTWDAALKFTGMKLDLLTDIDMILMIENAIRGGISCVMS--------------RYAKANNEFTEEYNSEEPT------SFIAYLDVNNLYGYALSDILPCRNFAWVPQNMVDGVIDEILNTNQERKTGY 349
BLAST of C2H2-type domain-containing protein vs. TrEMBL
Match: A0A158P5L8 (C2H2-type domain-containing protein OS=Tetranychus urticae OX=32264 PE=4 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 2.231e-36 Identity = 64/161 (39.75%), Postives = 97/161 (60.25%), Query Frame = 1 Query: 391 QKLDIFLEVDLEYPKEIHEKTIYFPFAPVKTIIKYEELSP*QKQ*------NVEKKKSSTKLVCNQYGKEKYLCHYRNL*FYVRYEMKLKQVHNIISFNQKPFMSSFIQDNIKNRKETTSKQDEF*KMLYKLLNNSVFGKTMENID*YVNITLLTNSRQDL 855 +K LEVDL+YP+ +H++ +P AP K I+ ++LS QK+ N K+ + KLV N K+KY+ H RNL FY+ + LK+VH II F Q+P++ S+IQ +NRK TS F K +KL+ NS++GK++E+ + + + TN RQ L Sbjct: 810 RKTGYILEVDLDYPESLHDEHNDYPLAPEKIIVDNDQLSNFQKEIVSMLEENGVKRYKTKKLVPNLMNKKKYVLHERNLKFYIEKGLILKKVHRIIKFEQEPWLRSYIQMCTENRKRATS---SFEKDFWKLMVNSLYGKSIEDKRKHSKVKVATNGRQAL 967 HSP 2 Score: 77.7962 bits (190), Expect = 2.231e-36 Identity = 47/136 (34.56%), Postives = 73/136 (53.68%), Query Frame = 3 Query: 3 NYISTPS*SWDLMLNNSGVVLDLLTDVDMFNVIKNNIRGGVSSVTGNRLITSWNEKYLYDKYSEPITEFKDEKEYQEAMKCLNDKSDLIYIDATALYSGIMTQVLPFKNFKW--ENVTYEIKNEILSTSKDSKIGY 404 +Y STP +WD L +G+ LDLLTD+DM +I+N IRGG+S V +Y++ EF +E +E S + Y+D LY ++ +LP +NF W +N + +EIL+T+++ K GY Sbjct: 699 HYFSTPGLTWDAALKFTGMKLDLLTDIDMILMIENAIRGGISCVMS--------------RYAKANNEFTEEYNSEEPT------SFIAYLDVNNLYGYALSDILPCRNFAWVPQNEVDGVIDEILNTNQERKTGY 814
BLAST of C2H2-type domain-containing protein vs. TrEMBL
Match: A0A087TYZ6 (Uncharacterized protein (Fragment) OS=Stegodyphus mimosarum OX=407821 GN=X975_09790 PE=4 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 5.686e-35 Identity = 67/153 (43.79%), Postives = 96/153 (62.75%), Query Frame = 1 Query: 409 LEVDLEYPKEIHEKTIYFPFAPVKTIIKYEELSP*QKQ*NVEKKKSST------KLVCNQYGKEKYLCHYRNL*FYVRYEMKLKQVHNIISFNQKPFMSSFIQDNIKNRKETTSKQDEF*KMLYKLLNNSVFGKTMENID*YVNITLLTNSRQ 849 LEVDLEYP+E+H+ +P AP K I EELSP ++ +K+ T KLV N K+ Y+ HYRNL +Y+ +KL +VH I+ F QKP++S +IQ N + RK+ + F K +KL+NNSV+GKTMEN+ V+I ++ N R+ Sbjct: 229 LEVDLEYPQELHDLHNEYPLAPEKCCITTEELSPYSL--SLLQKEGRTNPGNIQKLVPNLKKKQNYVLHYRNLKYYLEKGLKLTKVHKILKFLQKPWLSPYIQFNTEERKKVNTT---FEKNFFKLMNNSVYGKTMENVRNRVDIQIVNNVRK 376 HSP 2 Score: 67.3958 bits (163), Expect = 5.686e-35 Identity = 45/134 (33.58%), Postives = 68/134 (50.75%), Query Frame = 3 Query: 9 ISTPS*SWDLMLNNSGVVLDLLTDVDMFNVIKNNIRGGVSSVTGNRLITSWNEKYL--YDKYSEPITEFKDEKEYQEAMKCLNDKSDLIYIDATALYSGIMTQVLPFKNFKWENVTYEIKNEILSTSKDSKIGY 404 +++P +W L +G+ L+LLTD+DM I+ IRGG+S ++ N KYL YD S+P S +IY+DA LY M+Q LP+ F+W + + ILS+S+D +GY Sbjct: 116 MTSPGLAWQACLKMTGIELELLTDLDMHLFIERGIRGGISMISHR--WAEANNKYLPHYDP-SKP-------------------SSYIIYLDANNLYGWAMSQPLPYGGFQWVSPSAIDIEAILSSSEDGAVGY 227
BLAST of C2H2-type domain-containing protein vs. TrEMBL
Match: A0A4Y2QVZ0 (Uncharacterized protein OS=Araneus ventricosus OX=182803 GN=AVEN_149573_1 PE=4 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 3.173e-34 Identity = 69/150 (46.00%), Postives = 92/150 (61.33%), Query Frame = 1 Query: 409 LEVDLEYPKEIHEKTIYFPFAPVKTIIKYEELSP*QKQ*----NVEKKKSSTKLVCNQYGKEKYLCHYRNL*FYVRYEMKLKQVHNIISFNQKPFMSSFIQDNIKNRKETTSKQDEF*KMLYKLLNNSVFGKTMENID*YVNITLLTNSR 846 LEVDLEYP E+H +P AP K ++ E S K+ N+ K K S KL+ N KEKY+ HYRNL FYV+ +K+ +VH I+ F Q ++ ++I N RK TS F K L+KLLNN+VFGKTMEN+ VNI L+T+ + Sbjct: 875 LEVDLEYPSELHHLHNCYPLAPEKVLVSPSEYSDYTKELLYKLNLSKSKPSEKLIPNLRNKEKYVVHYRNLKFYVQLGLKVTKVHRILKFKQSAWLKNYIDFNTDQRKRATSN---FEKDLFKLLNNAVFGKTMENLRNRVNIDLVTDEK 1021 HSP 2 Score: 57.7658 bits (138), Expect = 3.173e-34 Identity = 47/136 (34.56%), Postives = 62/136 (45.59%), Query Frame = 3 Query: 9 ISTPS*SWDLMLNNSGVVLDLLTDVDMFNVIKNNIRGGVSSVTGNRLITSWNEKYL--YDKYSEPITEFKDEKEYQEAMKCLNDKSDLIYIDATALYSGIMTQVLPFKNFKW--ENVTYEIKNEILSTSKDSKIGY 404 + P +W L +GV L+LLTD+DM I+ IRGGV+ ++ S N YL YD P T S ++Y DA LY M+Q LP +F W ENV Y L+ DS +GY Sbjct: 766 FTAPGLAWQACLRMTGVELELLTDIDMHLFIEKGIRGGVAMISHR--FASANNPYLPTYD----PDTP----------------NSYIMYWDANNLYGWAMSQNLPTHDFSWTEENVDY------LNIPDDSDVGY 873
BLAST of C2H2-type domain-containing protein vs. TrEMBL
Match: A0A087TB85 (Protein NYNRIN (Fragment) OS=Stegodyphus mimosarum OX=407821 GN=X975_21590 PE=4 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 7.767e-34 Identity = 67/153 (43.79%), Postives = 96/153 (62.75%), Query Frame = 1 Query: 409 LEVDLEYPKEIHEKTIYFPFAPVKTIIKYEELSP*QKQ*NVEKKKSST------KLVCNQYGKEKYLCHYRNL*FYVRYEMKLKQVHNIISFNQKPFMSSFIQDNIKNRKETTSKQDEF*KMLYKLLNNSVFGKTMENID*YVNITLLTNSRQ 849 LEVDLEYP+E+H+ +P AP K I EELSP ++ +K+ T KLV N K+ Y+ HYRNL +Y+ +KL +VH I+ F QKP++S +IQ N + RK+ + F K +KL+NNSV+GKTMEN+ V+I ++ N R+ Sbjct: 597 LEVDLEYPQELHDLHNEYPLAPEKCCITTEELSPYSL--SLLQKEGRTNPGNIQKLVPNLKKKQNYVLHYRNLKYYLEKGLKLTKVHKILKFLQKPWLSPYIQFNTEERKKVNTT---FEKNFFKLMNNSVYGKTMENVRNRVDIQIVNNVRK 744 HSP 2 Score: 63.5438 bits (153), Expect = 7.767e-34 Identity = 45/136 (33.09%), Postives = 70/136 (51.47%), Query Frame = 3 Query: 9 ISTPS*SWDLMLNNSGVVLDLLTDVDMFNVIKNNIRGGVSSVTGNRLITSWNEKYL--YDKYSEPITEFKDEKEYQEAMKCLNDKSDLIYIDATALYSGIMTQVLPFKNFKWENVTYEIKNEILSTSKDSKIGYFF 410 +++P +W L +G+ L+LLTD+DM I+ IRGG+S ++ +R + N KYL YD S+P S +IY+DA LY M+Q LP+ F+W + + ILS+ +D +GY Sbjct: 484 MTSPRLAWQACLKMNGIELELLTDLDMHLFIERGIRGGISMIS-HRWAEA-NNKYLPHYDP-SKP-------------------SSYIIYLDANNLYGWAMSQPLPYGGFQWVSPSAIDIEAILSSPEDGAVGYIL 597
BLAST of C2H2-type domain-containing protein vs. Ensembl Nematostella
Match: EDO46109 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RR56]) HSP 1 Score: 81.2629 bits (199), Expect = 4.963e-25 Identity = 51/147 (34.69%), Postives = 79/147 (53.74%), Query Frame = 1 Query: 409 LEVDLEYPKEIHEKTIYFPFAPVKTIIKYEELSP*QKQ*NVEKKKSSTKLVCNQYGKEKYLCHYRNL*FYVRYEMKLKQVHNIISFNQKPFMSSFIQDNIKNRKETTSKQDEF*KMLYKLLNNSVFGKTMENID*YVNITLLTNSRQ 849 +EVD+ YP+ +H+ +P AP IK ++ KL+ N K KY+ H+ L Y +K+ +VH I+F + ++ ++I N R + T ++F K +KL+NNSVFGKTMENI V+I L+TN +Q Sbjct: 1260 VEVDMAYPRHLHDSHDDYPLAPES--IKINKVG---------------KLIPNLNDKTKYVVHHETLKLYESLGLKVTKVHRGITFEESGWLKTYIDLNTSLRAKAT---NDFEKDFFKLMNNSVFGKTMENIRNRVDIRLITNEKQ 1386 HSP 2 Score: 50.447 bits (119), Expect = 4.963e-25 Identity = 33/111 (29.73%), Postives = 50/111 (45.05%), Query Frame = 3 Query: 6 YISTPS*SWDLMLNNSGVVLDLLTDVDMFNVIKNNIRGGVSSVTGNRLITSWNEKYLYDKYSEPITEFKDEKEYQEAMKCLNDKSDLIYIDATALYSGIMTQVLPFKNFKW 338 Y + P +WD L + V L+LLTD DM + + IRGGVS ++ + N Y+ +EY + + Y+DA LY M++ LP F+W Sbjct: 1154 YYTAPGLAWDAALKITRVELELLTDCDMLLMFEEGIRGGVSMISTRH--SKANNPYM--------------REYDPNLP----TKYITYLDANNLYGWAMSKPLPTHGFRW 1244
BLAST of C2H2-type domain-containing protein vs. Planmine SMEST
Match: SMESG000009121.1 (SMESG000009121.1) HSP 1 Score: 235.343 bits (599), Expect = 3.085e-76 Identity = 118/142 (83.10%), Postives = 128/142 (90.14%), Query Frame = 1 Query: 385 KIQKLDIFLEVDLEYPKEIHEKTIYFPFAPVKTIIKYEELSP*QKQ*NVEKKKSSTKLVCNQYGKEKYLCHYRNL*FYVRYEMKLKQVHNIISFNQKPFMSSFIQDNIKNRKETTSKQDEF*KMLYKLLNNSVFGKTMENID 810 K K+ FLEVDLEYPKE H+KTIYFPFAPVKTIIKYEELSP QKQ ++EKKKSSTKL+CNQY KEKYLCHY+NL FY+R MKLKQVHNIISFNQKPFM+SFIQDNIKNRKE TSK+DEF KM+YKLLNNSVFGKTME ID Sbjct: 154 KDSKIGYFLEVDLEYPKETHDKTIYFPFAPVKTIIKYEELSPWQKQRSLEKKKSSTKLLCNQYDKEKYLCHYKNLQFYLRRGMKLKQVHNIISFNQKPFMASFIQDNIKNRKEATSKKDEFGKMVYKLLNNSVFGKTMETID 295 HSP 2 Score: 111.309 bits (277), Expect = 1.957e-28 Identity = 63/124 (50.81%), Postives = 71/124 (57.26%), Query Frame = 3 Query: 117 GGVSSVTGNRLITSWNEKYLYDKYSEPIT---EFKDEKEYQEAMKCLNDKSDLIYIDATALYSGIMTQVLPFKNFKWENVTYEIKNEILSTSKDSKIGYFFRS*FGISKRNSRKDNLFSICASK 479 G + +T NR Y +P+ E +++ EY E +KCLN K DLIYID TALYSGIMTQ LPFKNFKWENVT EI NEILST KDSKIGYF K K F K Sbjct: 72 GDAAKMTFNR----------YGNLVQPLAVVYEIENDDEYNEVLKCLNKKCDLIYIDTTALYSGIMTQYLPFKNFKWENVTDEIINEILSTPKDSKIGYFLEVDLEYPKETHDKTIYFPFAPVK 185
BLAST of C2H2-type domain-containing protein vs. Planmine SMEST
Match: SMESG000031227.1 (SMESG000031227.1) HSP 1 Score: 168.318 bits (425), Expect = 1.616e-64 Identity = 89/135 (65.93%), Postives = 99/135 (73.33%), Query Frame = 3 Query: 3 NYISTPS*SWDLMLNNSGVVLDLLTDVDMFNVIKNNIRGGVSSVTGNRLITSWNEKYLYDKYSEPITEFKDEKEYQEAMKCLNDKSDLIYIDATALYSGIMTQVLPFKNFKWENVTYEIKNEILSTSKDSKIGYF 407 NYISTPS S DL+L SGVVLDLLTDV+MFN+ NNIRGGVSSV GN LITS NEK+LY+KY E + + KDE E+++ MKCL DKSDLIYIDATALYSGIM Q LPF NFK E K KIGYF Sbjct: 237 NYISTPSLSGDLILKKSGVVLDLLTDVNMFNMKNNNIRGGVSSVMGNTLITSRNEKFLYNKYPEDLMKIKDEDEFEQVMKCLKDKSDLIYIDATALYSGIMKQYLPFANFKREE------------PKGFKIGYF 359 HSP 2 Score: 97.0561 bits (240), Expect = 1.616e-64 Identity = 47/77 (61.04%), Postives = 61/77 (79.22%), Query Frame = 1 Query: 394 KLDIFLEVDLEYPKEIHEKTIYFPFAPVKTIIKYEELSP*QKQ*NVEKKKSSTKLVCNQYGKEKYLCHYRNL*FYVR 624 K+ F+EVDLEY +EIH+KT+YFP AP+KT IK EE+S QK+ N+EKK S+ KL+C Q KEKY+C+YR L FY+R Sbjct: 355 KIGYFVEVDLEYTEEIHDKTMYFPLAPIKTKIKNEEISNWQKERNLEKKDSAVKLLCTQNNKEKYMCNYRTLQFYLR 431
BLAST of C2H2-type domain-containing protein vs. Planmine SMEST
Match: SMESG000068485.1 (SMESG000068485.1) HSP 1 Score: 205.682 bits (522), Expect = 5.584e-63 Identity = 101/136 (74.26%), Postives = 115/136 (84.56%), Query Frame = 3 Query: 3 NYISTPS*SWDLMLNNSGVVLDLLTDVDMFNVIKNNIRGGVSSVTGNRLITSWNEKYLYDKYSEPITEFKDEKEYQEAMKCLNDKSDLIYIDATALYSGIMTQVLPFKNFKWENVTYEIKNEILSTSKDSKIGYFF 410 NYISTPS SWDLML S VVL+LLTDVDMFN+IKNNIR G+SSV GNRLI SWNEK++Y+KYSE IT KDE+EY++ +KCLN+K DLIYIDATALYSGI+TQ LPF NF WE T EI ++ILST KDSKIGYF Sbjct: 297 NYISTPSLSWDLMLKKSDVVLNLLTDVDMFNMIKNNIREGLSSVMGNRLINSWNEKFIYNKYSEDITPIKDEEEYEQVLKCLNNKFDLIYIDATALYSGIVTQYLPFANFIWEEPTSEIMDKILSTKKDSKIGYFL 432 HSP 2 Score: 48.9062 bits (115), Expect = 2.185e-6 Identity = 21/33 (63.64%), Postives = 28/33 (84.85%), Query Frame = 1 Query: 382 QKIQKLDIFLEVDLEYPKEIHEKTIYFPFAPVK 480 +K K+ FLEVDLE+P+EIH+KT+YFP AP+K Sbjct: 423 KKDSKIGYFLEVDLEHPEEIHDKTMYFPLAPIK 455
BLAST of C2H2-type domain-containing protein vs. Planmine SMEST
Match: SMESG000010659.1 (SMESG000010659.1) HSP 1 Score: 159.458 bits (402), Expect = 5.281e-47 Identity = 84/157 (53.50%), Postives = 109/157 (69.43%), Query Frame = 1 Query: 394 KLDIFLEVDLEYPKEIHEKTIYFPFAPVKTIIKYEELSP*QKQ*NVEKKKSSTKLVCNQYGKEKYLCHYRNL*FYVRYEMKLKQVHNIISFNQKPFMSSFIQDNIKNRKETTSKQDEF*KMLYKLLNNSVFGKTMENID*YVNITLLTNSRQDLIKY 864 K+ F+EVDL+YPKEIH+KT YFPFA K I+KY+ELSP QK N ++ SS KL+C+Q+ K+ Y+ HYR L FY+R+ MK+K++HNIISF QKP+M ++ NI NR + F +YKLLNN+VFGKTME D Y I L T + DL Y Sbjct: 31 KIGYFVEVDLKYPKEIHDKTKYFPFALHKRIVKYQELSPWQKTRNPQQDDSSEKLICDQHDKKYYMVHYRMLQFYIRHGMKIKRIHNIISFKQKPWMEPYLNGNITNRNIAKKNKQFFLDTIYKLLNNAVFGKTMEKQDKYRTIKLFT--KHDLDSY 185 HSP 2 Score: 51.2174 bits (121), Expect = 2.597e-7 Identity = 28/59 (47.46%), Postives = 31/59 (52.54%), Query Frame = 3 Query: 303 MTQVLPFKNFKWENVTYEIKNEILSTSKDSKIGYFFRS*FGISKRNSRKDNLFSICASK 479 MTQ LPFKNFKWE T E+ +ILS K+SKIGYF K K F K Sbjct: 1 MTQYLPFKNFKWETPTDELLEKILSIPKESKIGYFVEVDLKYPKEIHDKTKYFPFALHK 59
BLAST of C2H2-type domain-containing protein vs. Planmine SMEST
Match: SMESG000081498.1 (SMESG000081498.1) HSP 1 Score: 131.339 bits (329), Expect = 5.583e-41 Identity = 72/139 (51.80%), Postives = 92/139 (66.19%), Query Frame = 1 Query: 394 KLDIFLEVDLEYPKEIHEKTIYFPFAPVKTIIKYEELSP*QKQ*NVEKKKSSTKLVCNQYGKEKYLCHYRNL*FYVRYEMKLKQVHNIISFNQKPFMSSFIQDNIKNRKETTSKQDEF*KMLYKLLNNSVFGKTMENID 810 K + ++DL+YPKEI+ KTI KYEELSP QK N ++ SS KL+CNQ+ K+ YL HYR L FY+R+ MKLK+VHNIISF QKP+ +I NI NR + F ++KLLNN+VFGKTMEN+D Sbjct: 70 KWETSTKLDLKYPKEIY-----------KTIAKYEELSPWQKSRNPQQDDSSEKLICNQHDKKYYLVHYRMLQFYLRHGMKLKRVHNIISFKQKPWKEPYINGNITNRNIAKKNKQSFLDTIFKLLNNAVFGKTMENLD 197 HSP 2 Score: 55.0694 bits (131), Expect = 5.583e-41 Identity = 31/75 (41.33%), Postives = 45/75 (60.00%), Query Frame = 3 Query: 138 GNRLITSWNEKYLYDKY----SEPITEFKDEKEYQEAMKCLNDKSDLIYIDATALYSGIMTQVLPFKNFKWENVT 350 G+R IT+ N + ++ +EP + + E + ++ LN+ + + Y DATALY GIMTQ LPF NFKWE T Sbjct: 2 GSRKITTNNIQQFFNSRDPDCNEPFVQISNN-ELPDVLEKLNNPTQIKYFDATALYFGIMTQYLPFSNFKWETST 75 The following BLAST results are available for this feature:
BLAST of C2H2-type domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of C2H2-type domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 2
BLAST of C2H2-type domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of C2H2-type domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of C2H2-type domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of C2H2-type domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of C2H2-type domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 0
BLAST of C2H2-type domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of C2H2-type domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 0
BLAST of C2H2-type domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of C2H2-type domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of C2H2-type domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 1
BLAST of C2H2-type domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of C2H2-type domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30012385 ID=SMED30012385|Name=C2H2-type domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=869bpback to top protein sequence of SMED30012385-orf-1 >SMED30012385-orf-1 ID=SMED30012385-orf-1|Name=SMED30012385-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=127bp MLNNSGVVLDLLTDVDMFNVIKNNIRGGVSSVTGNRLITSWNEKYLYDKYback to top Annotated Terms
The following terms have been associated with this transcript:
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