ZP domain-containing protein

Overview
NameZP domain-containing protein
Smed IDSMED30012272
Length (bp)2589
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of ZP domain-containing protein (SMED30012272) t-SNE clustered cells

Violin plots show distribution of expression levels for ZP domain-containing protein (SMED30012272) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of ZP domain-containing protein (SMED30012272) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for ZP domain-containing protein (SMED30012272) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30012272

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 6

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
head regionSMED30012272h1SMcG0010738 SmedASXL_011469SmedAsxl_ww_GCZZ01PMID:27034770
Currie et al., 2016		whole organism asexual adult RNA-sequencing evidence
nervous systemSMED30012272h1SMcG0010738 dd_Smed_v4_13456_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30012272h1SMcG0010738 dd_Smed_v4_13456_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
head regionSMED30012272h1SMcG0010738 dd_Smed_v6_13456_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017		whole organism asexual adult RNA-sequencing evidence
head regionSMED30012272h1SMcG0010738 OX_Smed_1.0.10778ox_Smed_v2PMID:24238224
Kao et al., 2013		whole organism asexual adult RNA-sequencing evidence
Category 2 cellSMED30012272h1SMcG0010738 dd_Smed_v4_13456_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017		whole organism asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of ZP domain-containing protein vs. TrEMBL
Match: A0A0R3U7J3 (Uncharacterized protein OS=Mesocestoides corti OX=53468 GN=MCOS_LOCUS2797 PE=4 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 5.326e-51
Identity = 102/258 (39.53%), Postives = 135/258 (52.33%), Query Frame = 3 
Query:  141 ADNFHIVASGPCLKKGKNYCQNIVPNSFCSEEKNECFCQNGFVAIKEKNGLICKTLLTDLKCSTDRDCKDVYGSSCHPGPGQCSCPAETFYVAQEHVCKDYPKNIPDPLCKHCRNIGGKCYFNTISPLSVIPKQNIYSGKCNCP--GILSTPTATNEKSQLMPSLEICQGIMVDLGSYCNDYDITCRAKIAECAHSTVMKYKVCVCPKDYIAVYQHYLKYYECYPKIERLTKFCEHCQNSQGSCIDVNSDGNEDSCYC 908
            AD +H+VA+GPC+ +G  YC   V NS CS  KNECFCQ  FVAI+E+ G+ CK LLT L C  DRDC  V  S CHPG G C+CP  T YV Q H C++         C+ CR + G CY+      S     +     C CP    + +P+      + +P    C+ I+VD+G  CN  D+ CR + +EC  S     + C C K Y  VYQ  L Y+EC+  +  +TK       S   C+D+N DG  D   C
Sbjct:   21 ADEYHVVAAGPCVAEGDAYCIRRVTNSVCSATKNECFCQPSFVAIQEEYGITCKPLLTSLSCHVDRDCVHVRNSICHPGAGFCACPGGTIYVPQAHACRNLADKENSTFCETCRQVNGVCYYEEQPGGSNNRNSSSPGLGCTCPFDTAMPSPSPDAASKEPVPHWAFCKAILVDIGGLCNQIDLLCRPRNSECT-SVGGSLRSCRCQKGYFPVYQQSLHYHECFRSVPCVTK------GSGDLCVDINGDGTADEHVC 271
[Close]
BLAST of ZP domain-containing protein vs. TrEMBL
Match: A0A158QE86 (Uncharacterized protein OS=Hymenolepis diminuta OX=6216 GN=HDID_LOCUS7029 PE=4 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 1.527e-48
Identity = 109/268 (40.67%), Postives = 150/268 (55.97%), Query Frame = 3 
Query:  141 ADNFHIVASGPCLKKGKNYCQNIVPNSFCSEEKNECFCQNGFVAIKEKNGLICKTLLTDLKCSTDRDCKDVYGSSCHPGPGQCSCPAETFYVAQEHVCKDYP-KNIPDPLCKHCRNIGGKCYFNTISPLSVIPKQNIYSGKCNCPGILSTPT-----ATNEKSQLMPSLEICQGIMVDLGSYCNDYDITCRAKIAECAHSTVMKYKVCVCPKDYIAVYQHYLKYYECYPKIERLTKFCEHCQNSQGS----CIDVNSDGNEDSCYCGK 914
            AD +H+VASGPC+ +G  YC   VPNSFCS  KNECFCQ  +VAI+E+ G+ CK LLT L C  D+DC  V  S CHPG G C+CP  T YVAQEH C++   K   +  C+ C  I G C++   +P     +       C+CP   + P      A+N++S  +     C+ I+VD+G  CND D+ CR + AEC+ S     + C C   Y  VYQ  L Y+EC+ ++      C+  +NS G     C+D+N DG  D  +C +
Sbjct:   29 ADEYHVVASGPCVDEGDAYCIKRVPNSFCSVTKNECFCQPAYVAIQEEYGITCKPLLTSLSCHVDKDCIHVKNSICHPGAGFCACPGGTVYVAQEHACRNLAEKQTNNSFCEKCTQINGICFY-ADTPDKGDSENKTPKFGCSCPYKTAMPMPKQVYASNDQS--LSPWAFCRAILVDVGELCNDADLICRPRNAECS-SRNGDPRTCRCKSGYFPVYQQSLHYHECFKQVP-----CKRQRNSNGHDSDICVDLNGDGIPDDNFCSR 287
[Close]
BLAST of ZP domain-containing protein vs. TrEMBL
Match: A0A5K3FMK4 (Uncharacterized protein OS=Mesocestoides corti OX=53468 PE=4 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 5.132e-48
Identity = 102/258 (39.53%), Postives = 135/258 (52.33%), Query Frame = 3 
Query:  141 ADNFHIVASGPCLKKGKNYCQNIVPNSFCSEEKNECFCQNGFVAIKEKNGLICKTLLTDLKCSTDRDCKDVYGSSCHPGPGQCSCPAETFYVAQEHVCKDYPKNIPDPLCKHCRNIGGKCYFNTISPLSVIPKQNIYSGKCNCP--GILSTPTATNEKSQLMPSLEICQGIMVDLGSYCNDYDITCRAKIAECAHSTVMKYKVCVCPKDYIAVYQHYLKYYECYPKIERLTKFCEHCQNSQGSCIDVNSDGNEDSCYC 908
            AD +H+VA+GPC+ +G  YC   V NS CS  KNECFCQ  FVAI+E+ G+ CK LLT L C  DRDC  V  S CHPG G C+CP  T YV Q H C++         C+ CR + G CY+      S     +     C CP    + +P+      + +P    C+ I+VD+G  CN  D+ CR + +EC  S     + C C K Y  VYQ  L Y+EC+  +  +TK       S   C+D+N DG  D   C
Sbjct:   21 ADEYHVVAAGPCVAEGDAYCIRRVTNSVCSATKNECFCQPSFVAIQEEYGITCKPLLTSLSCHVDRDCVHVRNSICHPGAGFCACPGGTIYVPQAHACRNLADKENSTFCETCRQVNGVCYYEEQPGGSNNRNSSSPGLGCTCPFDTAMPSPSPDAASKEPVPHWAFCKAILVDIGGLCNQIDLLCRPRNSECT-SVGGSLRSCRCQKGYFPVYQQSLHYHECFRSVPCVTK------GSGDLCVDINGDGTADEHVC 271
[Close]
BLAST of ZP domain-containing protein vs. TrEMBL
Match: A0A4E0RS07 (Uncharacterized protein OS=Fasciola hepatica OX=6192 GN=D915_000222 PE=4 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 1.628e-47
Identity = 147/559 (26.30%), Postives = 236/559 (42.22%), Query Frame = 3 
Query:  168 GPCLKKGKNYCQNIVPNSFCSEEKNECFCQNGFVAIKEKNGLICKTLLTDLKCSTDRDCKDVYGSSCHPGPGQCSCPAETFYVAQEHVCK---DYPKNIPDPLCKHCRNIGGKCY----FNTISPLSVIPKQNI---------------------YSGKCNCPGILSTPTATNEKSQL---------------------MPSLEICQGIMVDLGSYCNDYDITCRAKIAECAHSTVMKYK---------VCVCPKDYIAVYQHYLKYYECYPKIERLTKFCEHCQNSQGSCIDVN-SDGNEDSCYCGKWKS---------------ISNQEDTELSQPICKDDMLIIKCSSVHLEVCINNDKYIPKKRMAISEYSTGIF------YTNLVSKSTNFCSVTGLRKSKSLTCFQMSKPIQSTSFENN--CSTISFGQD--------------NSVYYSTFLFIPMDKFIFDPINDFNYEISCKADFKRSNPSMGQITEKSWKGEINSIEPLIETMEDLLSLKVVDFQSKTLKEVKIEQMFALDVFMKKRNVKFNYFLPEKC 1556
            GPCL +G ++C   V NS CS EKNECFC+ G+V+I+E  G+ CKTLLT+LKC  D DC  ++ S+CHPG G C+CP+ T YVAQ+H C+   +Y  NI    C  CR + G CY     +  SP  +  + N                      Y   C CP   + P AT  ++ +                     +P    C+ I V++G YCN+ D+ CRAK + C  +     +          C C   Y+ VYQ++L YYEC+ +I      C  C  + G C  +N  +     C C   ++               I N   +++    C + +  + C   HLEVC       P  R++    S   F        NLV   T  C +T   K        +S  +  +  E++  C  + +  D              +   YS +L I  D     P+    ++ +CK + +      GQ+ E++W  E + I+     ++  ++L++V+   ++++         L   +  ++ K++    E C
Sbjct:   61 GPCLHEGDSFCTRRVANSMCSTEKNECFCKPGYVSIQESYGITCKTLLTNLKCQVDADCVHIFNSACHPGAGLCACPSGTIYVAQDHACQQMAEYESNI---FCNKCRQVNGMCYKRDKTSAESPTILHSQTNSDDTYHAAWYQTHRSIRSLLLGYPYGCLCPYNTAMPLATPRRTWITNETHKKLPVRQADELDRLEDLPQWSFCKAIFVNVGEYCNNIDVLCRAKFSHCIQNEDGSNRRGQSSPFVFTCTCAPGYVPVYQNHLGYYECFQQIAANHTDCSACIKTGGRCFSMNLQNPTATGCLCPHDRAPGIASKPIGSDDSHGIPNFASSDVGSDSCTESLAEVSCFRSHLEVCYRPPTQPPYNRLSNDLASQKAFAFVTDARPNLVFDDT--CVLTPTTKHPFSLSAGLSPKLNESMKEDSLWCLVLDWRNDPGRQPCAVKVTEYMSGHLYSGYLAIVTDAEYQSPMRSMLFQFTCKTNNEIPQRVPGQVFERAWISENHDIDNSWSKVD--IALELVNQTGQSIETAFEYTPIRLRAQLHDQSGKYHALHMEAC 612
[Close]
BLAST of ZP domain-containing protein vs. TrEMBL
Match: A0A4E0RJA6 (ZP domain-containing protein OS=Fasciola hepatica OX=6192 GN=D915_000016 PE=4 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.070e-46
Identity = 170/643 (26.44%), Postives = 251/643 (39.04%), Query Frame = 3 
Query:  147 NFHIVASGPCLKKGKNYCQNIVPNSFCSEEKNECFCQNGFVAIKEKNGLICKTLLTDLKCSTDRDCKDVYGSSCHPGPGQCSCPAETFYVAQEHVCKDYPKNIPDPLCKHCRNIGGKCYFNTISPLSVIPKQ-NIYSGKCNCP-GILSTPTATNEKSQLMPSLEICQGIMVDLGSYCNDYDITCRAKIAEC-------------------------------AHSTVMKYKVCVCPKDYIAVYQHYLKYYECYPKIERLTKFCEHCQNSQGSCIDVNSDGNEDSCYCGKWKSISNQEDTELSQPICKDDMLIIKCSSVHLEVCINNDKYIPKKRMAISEYSTGIFYTNLVSKSTNFCSVTG--LRKSKSLT-------CFQMSKPIQSTSFENNCSTISFGQD------------------------------------------------NSVYYSTFLFIPMDKFIFDPINDFNYEISCKADFKRSNPSMGQITEKSWKGEINSIEPLIETMEDLLSLKVVDFQSKTLKEVKIEQMFALDVFMKKRNVKFNYFLPEKCSLINGKSNQVIYSRIKSISM--SPSPNQNELNMFAFSTTPKVDQNEPHKLRSNYFPAFMLKSKGISTFSCVFRLCQDSSMCNQ 1799
            N H+V SG C      +C   V NS C++ KNECFC+  FVAI+E   + CKTLLTDLKC  DRDC  V  SSCHPG G CSCP  T YV Q+H C+       D +CK C+   G C+      LS + K+ N     C CP G +      +  ++      IC G +VD+G  C+     CR+K A C                               A+      ++C C    +AVYQ  L Y EC+P++      C  C  S G C D+N+DG  D C C   KS+ ++  +   Q  C    + + CS  HL VC       P + +A ++ + G     LV  +    +V    + + K+ T         Q   P Q    E+N + +S   D                                                N+V Y   L I +++    P  DF   + C +   +  P++     K+ K   +            L  +VV+ +++ +   +I     LD  +   + ++     EKC   N  ++    +  K +       P  N      F+      Q     ++S  FPAF   +     F CVF+LC D   C Q
Sbjct:   34 NEHLVYSGACALYDTQFCSRQVENSVCNKVKNECFCKKDFVAIRENGRVTCKTLLTDLKCRVDRDCIHVNRSSCHPGAGYCSCPGNTIYVPQQHACRTRVSYNQDSVCKSCQLQNGSCFLYESFELSDVEKRFNPSRIGCVCPDGKIPVGMQFDGWTK-----NICSGKLVDMGFECDQKHAVCRSKRAICDSVSTQTSRSFSPHKVPANFLWPNIVDYSSMANGEQGPKRICQCQNTMVAVYQSTLGYTECFPQLGPKAAQCHSCIASGGLCYDLNNDGVGDGCVCPPHKSLGSKLRSTGEQS-CTGLQVSLNCSDGHLSVCYRPHSAPPYEHLA-TDLTEGKAVAQLVPTNAENMAVFHEYMNEEKNATSSDTDARSLQFRDPCQLNKMESNLARLSNQMDGFTGPHSTGLDQSIQEQHCVHFDVWQMKQTCGVRIYRLNVSSFISYVENAVQYEALLEIMVNRTRRTPNKDFQIPLKCISPPPKRMPTLDYHLRKTVKQSAD------------LEFRVVNKENREIYATQIGTTIRLDALLLDSSGQYKVLTVEKCQYGNRSTSHTSDASHKMVPFIYKGCPLTNAKVQIPFTN----GQYPSDHVQSAPFPAFREGTLFSLFFKCVFQLCVDPQQCFQ 653
[Close]
BLAST of ZP domain-containing protein vs. Planmine SMEST
Match: SMESG000039966.1 (SMESG000039966.1)

HSP 1 Score: 1504.96 bits (3895), Expect = 0.000e+0
Identity = 764/821 (93.06%), Postives = 767/821 (93.42%), Query Frame = 3 
Query:   63 MKTFWKCPMXXXXXXXXXXXXXXXGFADNFHIVASGPCLKKGKNYCQNIVPNSFCSEEKNECFCQNGFVAIKEKNGLICKTLLTDLKCSTDRDCKDVYGSSCHPGPGQCSCPAETFYVAQEHVCKDYPKNIPDPLCKHCRNIGGKCYFNTISPLSVIPKQNIYSGKCNCPGILSTPTATNEKSQLMPSLEICQGIMVDLGSYCNDYDITCRAKIAECAHSTVMKYKVCVCPKDYIAVYQHYLKYYECYPKIERLTKFCEHCQNSQGSCIDVNSDGNEDSCYCGKWKSISNQEDTELSQPICKDDMLIIKCSSVHLEVCINNDKYIPKKRMAISEYSTGIFYTNLVSKSTNFCSVTGLRKSKSLTCFQMSKPIQSTSFENNCSTISFGQDNSVYYSTFLFIPMDKFIFDPINDFNYEISCKADFKRSNPSMGQITEKSWKGEINSIEPLIETMEDLLSLKVVDFQSKTLKEVKIEQMFALDVFMKKRNVKFNYFLPEKCSLINGKSNQVIYSRIKSISMSPSPNQNELNMFAFSTTPKVDQNEPHKLRSNYFPAFMLKSKGISTFSCVFRLCQDSSMCNQNFEWKSQNKEEIKIPASHDDIKFVESHFEFFIGDENCCTRTSVAKENKVPCSDSLCLTPAQILTIVISVCTLTILLSFIVIILFKKRNRT---KYSDTNPKPNIEQSDFYELSILKPHQSTFQRFSLEDIDGENSNIYVTNKFTDDQFTERLNPTQHDVTLAKEYDFYVNLSALNFANRPGPSAPISLINRSRVNAEISTDPVNILENHCTLLDSQPPYHIQHHICTFDKVKSAKCSKSTAV 2516
            MKTFWKCPMILLQLTFLLILLIDIGFADNFHIVASGPCLKKGKNYCQNIVPNSFCSEEKNECFCQNGFVAIKEKNGLICKTLLTDLKCSTDRDCKDVYGSSCHPGPGQCSCPAETFYVAQEHVCKDYPKNIPDPLCKHCRNIGGKCYFNTISPLSVIPKQNIYSGKCNCPGILSTPTATNEKSQLMPSLEICQGIMVDLGSYCNDYDITCRAKIAECAHSTVMKYKVCVCPKDYIAVYQHYLKYYECYPKIERLTKFCEHCQNSQGSCIDVNSDGNEDSCYCGKWKSISNQEDTELSQPICKDDMLIIKCSSVHLEVCINNDKYIPKKRMAISEYSTGIFYTNLVSKSTNFCSVTGLRKSKSLTCFQMSKPIQSTSFENNCSTISFGQDNSVYYSTFLFIPMDKFIFDPINDFNYEISCKADFKRSNPSMGQITEKSWKGEINSIEPLIETMEDLLSLKVVDFQSKTLKEVKIEQMFALDVFMKKRNVKFNYFLPEKCSLINGKSNQVIYSRIKSISMS SPNQNELNMFAFSTTPKVDQNEPHKLRSNYFPAFMLKSKGISTFSCVFRLCQDSSMCNQNFEWKSQNKEEIKIPASHDDIKFVESHFEFFIGDENCCTRTSVAKENKVPCSDSLCLTPAQILTIVISVCTLTILLSFI  IL +  +R     Y  +NP                PH                        F DDQFTERLNPTQHDVTLAKEYDFYVNLSALNFANRPGPSAPISLINRSRVNAEISTDPVNILENHCTLLDSQPPYHIQHHICTFDKVKSAKCSKSTAV
Sbjct:    1 MKTFWKCPMILLQLTFLLILLIDIGFADNFHIVASGPCLKKGKNYCQNIVPNSFCSEEKNECFCQNGFVAIKEKNGLICKTLLTDLKCSTDRDCKDVYGSSCHPGPGQCSCPAETFYVAQEHVCKDYPKNIPDPLCKHCRNIGGKCYFNTISPLSVIPKQNIYSGKCNCPGILSTPTATNEKSQLMPSLEICQGIMVDLGSYCNDYDITCRAKIAECAHSTVMKYKVCVCPKDYIAVYQHYLKYYECYPKIERLTKFCEHCQNSQGSCIDVNSDGNEDSCYCGKWKSISNQEDTELSQPICKDDMLIIKCSSVHLEVCINNDKYIPKKRMAISEYSTGIFYTNLVSKSTNFCSVTGLRKSKSLTCFQMSKPIQSTSFENNCSTISFGQDNSVYYSTFLFIPMDKFIFDPINDFNYEISCKADFKRSNPSMGQITEKSWKGEINSIEPLIETMEDLLSLKVVDFQSKTLKEVKIEQMFALDVFMKKRNVKFNYFLPEKCSLINGKSNQVIYSRIKSISMSSSPNQNELNMFAFSTTPKVDQNEPHKLRSNYFPAFMLKSKGISTFSCVFRLCQDSSMCNQNFEWKSQNKEEIKIPASHDDIKFVESHFEFFIGDENCCTRTSVAKENKVPCSDSLCLTPAQILTIVISVCTLTILLSFITPILNQILSRVISMNYQFSNPT--------------NPH------------------------FKDDQFTERLNPTQHDVTLAKEYDFYVNLSALNFANRPGPSAPISLINRSRVNAEISTDPVNILENHCTLLDSQPPYHIQHHICTFDKVKSAKCSKSTAV 783

HSP 2 Score: 59.6918 bits (143), Expect = 7.813e-9
Identity = 27/28 (96.43%), Postives = 27/28 (96.43%), Query Frame = 1 
Query: 2080 TPILNQILSRVISMNYQFSNPTNPHFKG 2163
            TPILNQILSRVISMNYQFSNPTNPHFK 
Sbjct:  659 TPILNQILSRVISMNYQFSNPTNPHFKD 686
[Close]
BLAST of ZP domain-containing protein vs. Planmine SMEST
Match: SMESG000039966.1 (SMESG000039966.1)

HSP 1 Score: 1492.25 bits (3862), Expect = 0.000e+0
Identity = 740/797 (92.85%), Postives = 743/797 (93.22%), Query Frame = 3 
Query:  135 GFADNFHIVASGPCLKKGKNYCQNIVPNSFCSEEKNECFCQNGFVAIKEKNGLICKTLLTDLKCSTDRDCKDVYGSSCHPGPGQCSCPAETFYVAQEHVCKDYPKNIPDPLCKHCRNIGGKCYFNTISPLSVIPKQNIYSGKCNCPGILSTPTATNEKSQLMPSLEICQGIMVDLGSYCNDYDITCRAKIAECAHSTVMKYKVCVCPKDYIAVYQHYLKYYECYPKIERLTKFCEHCQNSQGSCIDVNSDGNEDSCYCGKWKSISNQEDTELSQPICKDDMLIIKCSSVHLEVCINNDKYIPKKRMAISEYSTGIFYTNLVSKSTNFCSVTGLRKSKSLTCFQMSKPIQSTSFENNCSTISFGQDNSVYYSTFLFIPMDKFIFDPINDFNYEISCKADFKRSNPSMGQITEKSWKGEINSIEPLIETMEDLLSLKVVDFQSKTLKEVKIEQMFALDVFMKKRNVKFNYFLPEKCSLINGKSNQVIYSRIKSISMSPSPNQNELNMFAFSTTPKVDQNEPHKLRSNYFPAFMLKSKGISTFSCVFRLCQDSSMCNQNFEWKSQNKEEIKIPASHDDIKFVESHFEFFIGDENCCTRTSVAKENKVPCSDSLCLTPAQILTIVISVCTLTILLSFIVIILFKKRNRT---KYSDTNPKPNIEQSDFYELSILKPHQSTFQRFSLEDIDGENSNIYVTNKFTDDQFTERLNPTQHDVTLAKEYDFYVNLSALNFANRPGPSAPISLINRSRVNAEISTDPVNILENHCTLLDSQPPYHIQHHICTFDKVKSAKCSKSTAV 2516
            GFADNFHIVASGPCLKKGKNYCQNIVPNSFCSEEKNECFCQNGFVAIKEKNGLICKTLLTDLKCSTDRDCKDVYGSSCHPGPGQCSCPAETFYVAQEHVCKDYPKNIPDPLCKHCRNIGGKCYFNTISPLSVIPKQNIYSGKCNCPGILSTPTATNEKSQLMPSLEICQGIMVDLGSYCNDYDITCRAKIAECAHSTVMKYKVCVCPKDYIAVYQHYLKYYECYPKIERLTKFCEHCQNSQGSCIDVNSDGNEDSCYCGKWKSISNQEDTELSQPICKDDMLIIKCSSVHLEVCINNDKYIPKKRMAISEYSTGIFYTNLVSKSTNFCSVTGLRKSKSLTCFQMSKPIQSTSFENNCSTISFGQDNSVYYSTFLFIPMDKFIFDPINDFNYEISCKADFKRSNPSMGQITEKSWKGEINSIEPLIETMEDLLSLKVVDFQSKTLKEVKIEQMFALDVFMKKRNVKFNYFLPEKCSLINGKSNQVIYSRIKSISMS SPNQNELNMFAFSTTPKVDQNEPHKLRSNYFPAFMLKSKGISTFSCVFRLCQDSSMCNQNFEWKSQNKEEIKIPASHDDIKFVESHFEFFIGDENCCTRTSVAKENKVPCSDSLCLTPAQILTIVISVCTLTILLSFI  IL +  +R     Y  +NP                PH                        F DDQFTERLNPTQHDVTLAKEYDFYVNLSALNFANRPGPSAPISLINRSRVNAEISTDPVNILENHCTLLDSQPPYHIQHHICTFDKVKSAKCSKSTAV
Sbjct:   17 GFADNFHIVASGPCLKKGKNYCQNIVPNSFCSEEKNECFCQNGFVAIKEKNGLICKTLLTDLKCSTDRDCKDVYGSSCHPGPGQCSCPAETFYVAQEHVCKDYPKNIPDPLCKHCRNIGGKCYFNTISPLSVIPKQNIYSGKCNCPGILSTPTATNEKSQLMPSLEICQGIMVDLGSYCNDYDITCRAKIAECAHSTVMKYKVCVCPKDYIAVYQHYLKYYECYPKIERLTKFCEHCQNSQGSCIDVNSDGNEDSCYCGKWKSISNQEDTELSQPICKDDMLIIKCSSVHLEVCINNDKYIPKKRMAISEYSTGIFYTNLVSKSTNFCSVTGLRKSKSLTCFQMSKPIQSTSFENNCSTISFGQDNSVYYSTFLFIPMDKFIFDPINDFNYEISCKADFKRSNPSMGQITEKSWKGEINSIEPLIETMEDLLSLKVVDFQSKTLKEVKIEQMFALDVFMKKRNVKFNYFLPEKCSLINGKSNQVIYSRIKSISMSSSPNQNELNMFAFSTTPKVDQNEPHKLRSNYFPAFMLKSKGISTFSCVFRLCQDSSMCNQNFEWKSQNKEEIKIPASHDDIKFVESHFEFFIGDENCCTRTSVAKENKVPCSDSLCLTPAQILTIVISVCTLTILLSFITPILNQILSRVISMNYQFSNPT--------------NPH------------------------FKDDQFTERLNPTQHDVTLAKEYDFYVNLSALNFANRPGPSAPISLINRSRVNAEISTDPVNILENHCTLLDSQPPYHIQHHICTFDKVKSAKCSKSTAV 775

HSP 2 Score: 59.6918 bits (143), Expect = 7.845e-9
Identity = 27/28 (96.43%), Postives = 27/28 (96.43%), Query Frame = 1 
Query: 2080 TPILNQILSRVISMNYQFSNPTNPHFKG 2163
            TPILNQILSRVISMNYQFSNPTNPHFK 
Sbjct:  651 TPILNQILSRVISMNYQFSNPTNPHFKD 678
[Close]
BLAST of ZP domain-containing protein vs. Planmine SMEST
Match: SMESG000068315.1 (SMESG000068315.1)

HSP 1 Score: 277.33 bits (708), Expect = 1.757e-80
Identity = 203/707 (28.71%), Postives = 332/707 (46.96%), Query Frame = 3 
Query:  150 FHIVASGPCLKKGKNYCQNIVPNSFCSEEKNECFCQNGFVAIKEKNGLICKTLLTDLKCSTDRDCKDVYGSSCHPGPGQCSCPAETFYVAQEHVCKDYPKNIPDP-----LCKHCRNIGGKC--YFNTISPLSVIPKQNIYSG----KCNCPGILSTPTATNEKSQLMPSLEICQGIMVDLGSYCNDYDITCRAKIAECAHSTVMKYKVCVCPKDYIAVYQHYLKYYECYPKIERLTKFCEHCQNSQGSCIDVNSDGNEDSCYCGKWKSISNQEDTELSQP---------ICKDDMLIIKCSSVHLEVCI------NNDKY---IPKKRMAISEYSTGIFYTNLVSKSTNFCSVT---GLRKSKSLTCFQMSKPIQSTSFENNCSTISFGQDNSVYYSTFLFIPMDKFIFDPINDFNYEISCKADFKRSNPSMGQITEKSWKGEINSIEPLIE--TMEDLLSLKVVDFQSKTLKEVKIEQMFALDVFMKKRNVKFNYFLPEKCSLINGKSNQVIYSRIKSISMSPSPNQNELN--MFAFSTTPKVDQNEPHK-----LRSNYFPAFMLKSKGISTFSCVFRLCQDSSMCNQNFEWKSQNKEEIKI--PASHDDIKFVESHFEFFIGDENCCTRTSVAKENKVPCSDSLCLTPAQILTIVISVCTLTILLSFIVIILFKKRNRTKYSDTNPKPNIEQSDFYELSILKP 2141
            + +V  GPCL+ G  +C+  V NSFC ++KN+C+C+  FV IKE  G+ CK LLT+LKC+ D++C+DV GS+CHPG G C+CP  T YV Q H CK   K I  P     LC  C+ IGG+C  Y N I  +   P  N  +      C+CPGI  T   +++   L  S  IC  I+VD+G  CN+ D+ CR+  A C  +++  Y +C CP  ++AVYQ YL Y+ECYP I+     C  C  + G C D+N+D   D CYCG+ K++  QED + +            C  +++ I C   +L++C       N+ ++   I K+R  I        +    S   N C +T     R   +   F + K + +      C   +    N   YS ++ + +DK+  DPI+D   + SCK D+     + GQ  ++SW  E  ++    E  T  +  +  +++  +  +  V       L   +    +++N    E C   N   +    ++ K I+     +++         S +   +Q+ P +     L S +FPAF +       F C+FR C+    C+   +    + +      P   DDI+F+   F+  +         S      V CS   CL   ++L ++  +  + +L++ +  +LF++ N+      N + N+ +      S+LKP
Sbjct:   24 YDVVHPGPCLEYGNRFCEEKVANSFCLKKKNKCYCKPQFVNIKESYGVTCKPLLTNLKCNMDKNCRDVDGSTCHPGAGACTCPYNTLYVPQLHACK---KQILSPENDAILCIKCKEIGGECFQYTNQIGNIHSYPVSNAGNNFPHIGCSCPGI--TTIQSDKVDDL--SDAICNQILVDIGHPCNNMDLICRSSKAVCFETSLFSYSICHCPPGHVAVYQEYLGYHECYPSIKLNVDSCRLCLRTNGLCFDMNADEQPDGCYCGRLKTV--QEDFKANGAHNDQNSLLQTCSKNIVEIFCWPENLKICYYPPKAPNHARFIDNITKQRALIFITDGHSLFREDDSGPNNECLLTIEETHRSRDNSIRFCIEKQLNTLEVNLPCGISATKYSNGYLYSGYVAVWVDKYFADPISDQLIDFSCKCDYSFLRMTPGQAIDRSWPVENINLNYNRESNTTTEFFNFSILNPDNSVVYSVFKMAPIKLYAVLNTEEIEYNSIAAESCWCTNSSDDSSPNNKWKLINRGCIESRSGFTTPFLLSSNSASTNQSNPDRKAFVELSSGFFPAFTMFDSSQLIFKCLFRFCKHKHWCSLRKQCTDDHPQFFTTPPPKRFDDIRFLVKSFKVSVVSVPKVDSVSRGGVKSV-CSFFWCLPGDKLLLVISLLTVILLLVTALAFVLFRRHNQL----INYRSNVFKETNTNNSLLKP 716
[Close]
BLAST of ZP domain-containing protein vs. Planmine SMEST
Match: SMESG000020498.1 (SMESG000020498.1)

HSP 1 Score: 268.47 bits (685), Expect = 4.495e-77
Identity = 187/685 (27.30%), Postives = 328/685 (47.88%), Query Frame = 3 
Query:  138 FADNFHIVASGPCLKKGKNYCQNIVPNSFCSEEKNECFCQNGFVAIKEKNGLICKTLLTDLKCSTDRDCKDVYGSS-CHPGPGQCSCPAETFYVAQEHVCKDYPKNIPDPLCKHCRNIGGKCYFNTISPLSVIPK-QNIYSGKCNCPGILSTPTATNEKSQLMPSLEICQGIMVDLGSYCNDYDITCRAKIAECAHSTVMKYKVCVCPKDYIAVYQHYLKYYECYPKIERLT-KFCEHCQNSQGSC-IDVNSDGNED-SCYCGKWKSISNQEDTELSQPICKDDMLIIKCSSVHLEVCIN---NDKYIPKKRMAISEYSTGIFYTNLVSKSTN----FCSVTGLRKSKSLTCFQMSKPIQ-STSFENNCSTISFGQDNSVYYSTFLFIPMDKFIFDPINDFNYEISCKADFKRSNPSMGQITEKSWKGEINSIEP-LIETMEDLLSLKVVDFQSKTLKEVKIEQMFALDVFMK--KRNVKFNYFLPEKCSLINGKSNQVIYSRIKSISMSPSPNQNELNMFAFSTTPKVDQNEPHKLR--SNYFPAFMLKSKGISTFSCVFRLCQDSSMCNQNFEWKSQNKEEIKIPASHDDIKFVESHFEFFIGDENCCTR-TSVAKENKVPCSDSLCLTPAQILTIVISVCTLTILLSFIVIILFKKRNRTKYSDTNPKPNIEQSDFYELSIL 2135
            + D + +V  GPCL K   YC N V NS+CS++ NECFC  G+V ++E++G+ICK LL+++KC  D +C ++  SS CHPG G C+CP+   +V+ ++ C++Y +N  + +C HC  +GG C+  +   L++ PK  NI   +C+CP    TP A       +   +IC  I V+LG YCND D+ C +K ++C +S      +C C   Y+AVY+    ++ CY  +  +    C  C +S G+C I V S  N    C C K++      D       C      IKC S  +E+C+N   N +Y  +    I      I  ++  S   N     C +   + S   T   +    + +T   ++C   +    N  +   ++ +    +I D  NDF ++++CK    + N   GQI ++SW G    I P +  +++D + + + +    + + V ++    + +  K  KR  +  YFL EKCS I   S   IY R+     S    ++++  F              K+   S+ F    + +     +SC+ +LC+D   C+QN  +    +   +    H ++KF+   F   +   N   +  +   EN+V    S+CL+  Q++ + I      +L+  ++ I F K++  +  D++    I Q ++ ++S++
Sbjct:   16 YCDKYQVVYRGPCLSKPSYYCHNKVKNSYCSKQNNECFCSFGYVTVRERSGVICKPLLSEMKCRFDAECSEITNSSICHPGAGSCTCPSGMIFVSHQNFCRNYLRNSTNEICYHCSRLGGICF--SEENLNLFPKTSNIIKSQCSCPFNTMTPNAKKS----IKKYQICMAIRVNLGEYCNDDDLICISKNSKCIYSHEYLATICQCKTGYLAVYEKKESHFNCYQLVSDIEYPRCSLCYSSGGTCIIQVKSSRNVVLKCLCDKYQYF----DVTGHSIQCMKVTAGIKCQSQKIEICLNIPTNYEYYAQLLDYIRRTPKAISISDAYSHRKNISKKICKMNEYKISYEKTVASLCSDFEINTKPSDHCGISNGNYLNINFVGLYMRVWNQPYIIDIANDFLFDLTCKTSVDQENLVNGQILDRSWTGTGKVILPDVFISLDDTVDMYITNLNGLSYEFVSLQN---IQIHFKSFKRKDELPYFLVEKCSEIYSDSQITIYQRLH---FSEIKIKHKIRGFTRHLLNSSTNFHDQKILFISSEFQIPNVSAVTNVLYSCIIKLCEDLFWCSQN-NYHESEENSFRQQMKHVNVKFIIKQFRIQVFQSNVDQKFVTFKAENRVCQKGSICLSQNQLVILSILTGIFFVLVFVVLTIFFLKKSMAQLIDSSRSTQINQMNYMDISLI 683
[Close]
BLAST of ZP domain-containing protein vs. Planmine SMEST
Match: SMESG000020498.1 (SMESG000020498.1)

HSP 1 Score: 260.381 bits (664), Expect = 2.089e-74
Identity = 184/683 (26.94%), Postives = 318/683 (46.56%), Query Frame = 3 
Query:  138 FADNFHIVASGPCLKKGKNYCQNIVPNSFCSEEKNECFCQNGFVAIKEKNGLICKTLLTDLKCSTDRDCKDVYGSS-CHPGPGQCSCPAETFYVAQEHVCKDYPKNIPDPLCKHCRNIGGKCYFNTISPLSVIPK-QNIYSGKCNCPGILSTPTATNEKSQLMPSLEICQGIMVDLGSYCNDYDITCRAKIAECAHSTVMKYKVCVCPKDYIAVYQHYLKYYECYPKIERLT-KFCEHCQNSQGSC-IDVNSDGNED-SCYCGKWKSISNQEDTELSQPICKDDMLIIKCSSVHLEVCIN---NDKYIPKKRMAISEYSTGIFYTNLVSKSTN----FCSVTGLRKSKSLTCFQMSKPIQ-STSFENNCSTISFGQDNSVYYSTFLFIPMDKFIFDPINDFNYEISCKADFKRSNPSMGQITEKSWKGEINSIEP-LIETMEDLLSLKVVDFQSKTLKEVKIEQMFALDVFMK--KRNVKFNYFLPEKCSLINGKSNQVIYSRIKSISMSPSPNQNELNMFAFSTTPKVDQNEPHKLRSNYFPAFMLKSKGISTFSCVFRLCQDSSMCNQNFEWKSQNKEEIKIPASHDDIKFVESHFEFFIGDENCCTR-TSVAKENKVPCSDSLCLTPAQILTIVISVCTLTILLSFIVIILFKKRNRTKYSDTNPKPNIEQSDFYELSIL 2135
            + D + +V  GPCL K   YC N V NS+CS++ NECFC  G+V ++E++G+ICK LL+++KC  D +C ++  SS CHPG G C+CP+   +V+ ++ C++Y +N  + +C HC  +GG C+  +   L++ PK  NI   +C+CP    TP A       +   +IC  I V+LG YCND D+ C +K ++C +S      +C C   Y+AVY+    ++ CY  +  +    C  C +S G+C I V S  N    C C K++      D       C      IKC S  +E+C+N   N +Y  +    I      I  ++  S   N     C +   + S   T   +    + +T   ++C   +    N  +   ++ +    +I D  NDF ++++CK    + N   GQI ++SW G    I P +  +++D + + + +    + + V ++    + +  K  KR  +  YFL EKCS I   S   IY              +E  +   S    V                         +SC+ +LC+D   C+QN  +    +   +    H ++KF+   F   +   N   +  +   EN+V    S+CL+  Q++ + I      +L+  ++ I F K++  +  D++    I Q ++ ++S++
Sbjct:   16 YCDKYQVVYRGPCLSKPSYYCHNKVKNSYCSKQNNECFCSFGYVTVRERSGVICKPLLSEMKCRFDAECSEITNSSICHPGAGSCTCPSGMIFVSHQNFCRNYLRNSTNEICYHCSRLGGICF--SEENLNLFPKTSNIIKSQCSCPFNTMTPNAKKS----IKKYQICMAIRVNLGEYCNDDDLICISKNSKCIYSHEYLATICQCKTGYLAVYEKKESHFNCYQLVSDIEYPRCSLCYSSGGTCIIQVKSSRNVVLKCLCDKYQYF----DVTGHSIQCMKVTAGIKCQSQKIEICLNIPTNYEYYAQLLDYIRRTPKAISISDAYSHRKNISKKICKMNEYKISYEKTVASLCSDFEINTKPSDHCGISNGNYLNINFVGLYMRVWNQPYIIDIANDFLFDLTCKTSVDQENLVNGQILDRSWTGTGKVILPDVFISLDDTVDMYITNLNGLSYEFVSLQN---IQIHFKSFKRKDELPYFLVEKCSEIYSDSQITIYQ------------SSEFQIPNVSAVTNV------------------------LYSCIIKLCEDLFWCSQN-NYHESEENSFRQQMKHVNVKFIIKQFRIQVFQSNVDQKFVTFKAENRVCQKGSICLSQNQLVILSILTGIFFVLVFVVLTIFFLKKSMAQLIDSSRSTQINQMNYMDISLI 648
The following BLAST results are available for this feature:
BLAST of ZP domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of ZP domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of ZP domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of ZP domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of ZP domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of ZP domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of ZP domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of ZP domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0R3U7J35.326e-5139.53Uncharacterized protein OS=Mesocestoides corti OX=... [more]
A0A158QE861.527e-4840.67Uncharacterized protein OS=Hymenolepis diminuta OX... [more]
A0A5K3FMK45.132e-4839.53Uncharacterized protein OS=Mesocestoides corti OX=... [more]
A0A4E0RS071.628e-4726.30Uncharacterized protein OS=Fasciola hepatica OX=61... [more]
A0A4E0RJA61.070e-4626.44ZP domain-containing protein OS=Fasciola hepatica ... [more]
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BLAST of ZP domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of ZP domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of ZP domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of ZP domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of ZP domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of ZP domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000039966.17.813e-993.06SMESG000039966.1[more]
SMESG000039966.17.845e-992.85SMESG000039966.1[more]
SMESG000068315.11.757e-8028.71SMESG000068315.1[more]
SMESG000020498.14.495e-7727.30SMESG000020498.1[more]
SMESG000020498.12.089e-7426.94SMESG000020498.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30012272 ID=SMED30012272|Name=ZP domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=2589bp
CTTTTAATTAAAATTATTGATTATTAAAATAAAATAAAACAATAATTTAT
TCTCTTCTATCAATGAAAACATTTTGGAAATGTCCAATGATTCTTTTACA
ACTGACATTTCTATTAATATTACTGATTGATATTGGATTCGCAGATAATT
TTCACATTGTCGCTTCAGGTCCATGTTTGAAGAAGGGGAAAAACTACTGT
CAAAATATTGTTCCAAACAGTTTCTGTTCCGAAGAGAAAAATGAATGTTT
CTGTCAGAATGGATTTGTAGCAATCAAAGAGAAAAACGGATTAATTTGTA
AAACATTACTTACGGATTTAAAATGTTCCACGGATAGAGACTGCAAAGAT
GTCTATGGTAGCAGTTGTCATCCAGGCCCAGGTCAGTGCTCATGTCCGGC
GGAAACATTCTATGTGGCTCAAGAACACGTTTGCAAAGACTATCCTAAGA
ATATTCCTGATCCACTTTGCAAACATTGCCGAAATATCGGGGGCAAGTGT
TATTTCAACACAATATCGCCATTGTCAGTCATTCCCAAACAAAATATATA
CTCTGGAAAATGTAACTGTCCTGGAATTTTGTCTACTCCAACAGCTACTA
ATGAAAAGTCTCAACTCATGCCATCTCTAGAGATTTGTCAAGGAATAATG
GTGGATTTGGGATCGTATTGTAATGACTATGACATAACATGCAGAGCAAA
AATAGCTGAATGTGCTCATAGCACTGTTATGAAATACAAAGTTTGCGTTT
GTCCCAAAGATTATATAGCAGTTTACCAGCATTATTTAAAGTATTACGAA
TGCTATCCAAAAATAGAAAGATTGACAAAATTCTGTGAGCACTGCCAAAA
TAGTCAGGGCTCATGCATTGATGTCAACAGTGACGGAAATGAGGATTCCT
GCTACTGTGGGAAATGGAAATCTATTTCAAATCAAGAGGATACGGAGCTA
TCCCAACCAATTTGCAAGGATGACATGTTGATCATCAAATGCTCATCTGT
CCATCTGGAGGTCTGTATCAACAACGACAAATATATCCCAAAGAAAAGGA
TGGCAATCAGTGAATATAGTACTGGCATATTTTACACTAATCTGGTCAGC
AAGTCCACAAATTTCTGCTCAGTTACCGGGCTAAGAAAATCAAAATCTTT
AACTTGTTTTCAAATGAGCAAGCCAATTCAGTCGACATCTTTTGAAAACA
ACTGTTCAACTATTTCCTTTGGACAAGATAACAGTGTCTACTACAGTACG
TTTCTTTTTATTCCAATGGACAAGTTCATTTTTGATCCCATCAATGATTT
CAATTACGAAATTTCATGTAAGGCAGATTTTAAACGCAGCAATCCCTCAA
TGGGACAGATCACAGAAAAATCATGGAAAGGTGAAATCAACTCTATTGAG
CCACTAATTGAAACAATGGAAGATCTTTTATCGTTGAAAGTTGTTGATTT
TCAATCAAAGACCTTGAAAGAAGTTAAAATAGAACAAATGTTTGCTCTGG
ATGTTTTTATGAAAAAAAGGAATGTGAAATTCAATTACTTCCTCCCAGAG
AAATGTTCGTTAATTAATGGGAAATCCAATCAAGTCATTTATTCAAGAAT
TAAAAGCATTTCAATGAGCCCTTCTCCGAATCAAAACGAGTTGAATATGT
TTGCTTTCTCAACGACTCCTAAAGTTGATCAGAACGAACCTCATAAGTTG
CGGTCCAACTATTTCCCAGCCTTTATGTTGAAATCTAAAGGAATTTCAAC
CTTTTCTTGTGTTTTTCGTTTGTGTCAAGATTCCTCAATGTGTAATCAGA
ATTTCGAATGGAAAAGTCAGAATAAAGAAGAAATTAAAATTCCTGCTAGT
CACGACGATATAAAATTCGTGGAGTCCCATTTCGAATTTTTCATAGGAGA
TGAAAACTGTTGCACCAGAACTTCTGTTGCAAAAGAAAATAAAGTCCCAT
GTTCCGATTCATTATGTCTCACACCAGCACAAATTTTGACCATTGTAATC
TCCGTCTGTACGCTGACCATATTACTTTCATTTATAGTAATTATTTTATT
TAAAAAAAGAAACCGAACCAAATATTCAGACACCAATCCTAAACCAAATA
TTGAGCAGAGTGATTTCTATGAATTATCAATTCTCAAACCCCACCAATCC
ACATTTCAAAGGTTTTCTCTTGAAGATATTGATGGTGAGAACTCCAATAT
TTATGTCACGAATAAATTTACAGACGATCAGTTCACTGAACGGCTGAATC
CAACACAGCACGATGTTACTTTGGCTAAAGAATATGATTTCTATGTCAAT
TTATCAGCTCTAAATTTTGCCAACAGACCGGGTCCTTCTGCACCGATTTC
TTTGATAAATCGCTCTCGAGTGAATGCAGAAATCAGTACAGATCCCGTTA
ATATCCTTGAAAATCATTGTACCTTACTAGATTCACAGCCACCTTATCAC
ATCCAGCATCACATTTGTACATTTGATAAAGTCAAATCAGCTAAATGCTC
AAAGTCAACTGCTGTGTAAGAATTACACCGGACATAGGACCATCAATATT
GAAGAAAATCTATATTCATATTTTATTAATATATCAGAG
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protein sequence of SMED30012272-orf-1

>SMED30012272-orf-1 ID=SMED30012272-orf-1|Name=SMED30012272-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=819bp
MKTFWKCPMILLQLTFLLILLIDIGFADNFHIVASGPCLKKGKNYCQNIV
PNSFCSEEKNECFCQNGFVAIKEKNGLICKTLLTDLKCSTDRDCKDVYGS
SCHPGPGQCSCPAETFYVAQEHVCKDYPKNIPDPLCKHCRNIGGKCYFNT
ISPLSVIPKQNIYSGKCNCPGILSTPTATNEKSQLMPSLEICQGIMVDLG
SYCNDYDITCRAKIAECAHSTVMKYKVCVCPKDYIAVYQHYLKYYECYPK
IERLTKFCEHCQNSQGSCIDVNSDGNEDSCYCGKWKSISNQEDTELSQPI
CKDDMLIIKCSSVHLEVCINNDKYIPKKRMAISEYSTGIFYTNLVSKSTN
FCSVTGLRKSKSLTCFQMSKPIQSTSFENNCSTISFGQDNSVYYSTFLFI
PMDKFIFDPINDFNYEISCKADFKRSNPSMGQITEKSWKGEINSIEPLIE
TMEDLLSLKVVDFQSKTLKEVKIEQMFALDVFMKKRNVKFNYFLPEKCSL
INGKSNQVIYSRIKSISMSPSPNQNELNMFAFSTTPKVDQNEPHKLRSNY
FPAFMLKSKGISTFSCVFRLCQDSSMCNQNFEWKSQNKEEIKIPASHDDI
KFVESHFEFFIGDENCCTRTSVAKENKVPCSDSLCLTPAQILTIVISVCT
LTILLSFIVIILFKKRNRTKYSDTNPKPNIEQSDFYELSILKPHQSTFQR
FSLEDIDGENSNIYVTNKFTDDQFTERLNPTQHDVTLAKEYDFYVNLSAL
NFANRPGPSAPISLINRSRVNAEISTDPVNILENHCTLLDSQPPYHIQHH
ICTFDKVKSAKCSKSTAV*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000028Category 2 cell
PLANA:0000099neuron
PLANA:0000418head
Vocabulary: INTERPRO
TermDefinition
IPR001627Semap_dom
Vocabulary: molecular function
TermDefinition
GO:0005515protein binding
Vocabulary: cellular component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..27
score: 0.906
NoneNo IPR availableTMHMMTMhelixcoord: 7..26
NoneNo IPR availableTMHMMTMhelixcoord: 641..663