U3 small nucleolar RNA-associated protein 11

Overview
NameU3 small nucleolar RNA-associated protein 11
Smed IDSMED30012225
Length (bp)704
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of U3 small nucleolar RNA-associated protein 11 (SMED30012225) t-SNE clustered cells

Violin plots show distribution of expression levels for U3 small nucleolar RNA-associated protein 11 (SMED30012225) in cells (dots) of each of the 12 neoblast clusters.

 

back to top

 

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of U3 small nucleolar RNA-associated protein 11 (SMED30012225) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for U3 small nucleolar RNA-associated protein 11 (SMED30012225) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

back to top

 

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

back to top
Anatomical Expression

PAGE et. al., 2020



SMED30012225

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 1

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30012225h1SMcG0015062 SmedASXL_008384SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of U3 small nucleolar RNA-associated protein 11 vs. Ensembl Human
Match: UTP11 (UTP11 small subunit processome component [Source:HGNC Symbol;Acc:HGNC:24329])

HSP 1 Score: 69.707 bits (169), Expect = 9.690e-14
Identity = 70/231 (30.30%), Postives = 110/231 (47.62%), Query Frame = 3 
Query:   33 GLIKKIQKSHNRIYRERPQPESREHLGILPKKKDFKQISKQRHKIQK--KNIEKEKLIQDRNPDEFYFKMLRKD--------KHPEDAYTEDQVKEYMSRDIKYLDTKLTMELRKIEKLRGKLTL----PSKPSKLTIFVD---------------------DDKVNTKNIYEEIKAKTSSI-NSEQFKNDSKEQIEFYQELSERLDRSKALKVQLETLKCRYTILSKKDK 617
               +K  KS  R +RER QP  R+HLG+L KKKD+K  +    K Q+  K + K+ L  ++NPDEFY+KM R          K  ++  T +Q+K   ++D+KY++ K   E +KIE+L+ +L L      + +K   F D                     D   N   I    K K   + N    K  +KE+ + Y  L++R++R K L V  + ++ R  ++ K  K
Sbjct:    3 AAFRKAAKSRQREHRERSQPGFRKHLGLLEKKKDYKLRADDYRKKQEYLKALRKKAL--EKNPDEFYYKMTRVKLQDGVHIIKETKEEVTPEQLKLMRTQDVKYIEMKRVAEAKKIERLKSELHLLDFQGKQQNKHVFFFDTKKEVEQFDVATHLQTAPELVDRVFNRPRIETLQKEKVKGVTNQTGLKRIAKERQKQYNCLTQRIEREKKLFVIAQKIQTRKDLMDKTQK 231
[Close]
BLAST of U3 small nucleolar RNA-associated protein 11 vs. Ensembl Celegans
Match: C16C10.2 (Probable U3 small nucleolar RNA-associated protein 11 [Source:UniProtKB/Swiss-Prot;Acc:Q09462])

HSP 1 Score: 62.7734 bits (151), Expect = 1.399e-11
Identity = 62/217 (28.57%), Postives = 112/217 (51.61%), Query Frame = 3 
Query:   57 SHNRIYRERPQPESREHLGILPKKKDFKQISKQRHKIQKKNIEK-EKLIQDRNPDEFYFKMLRK---------DKHPEDAYTEDQVKEYMS--RDIKYLDTKLTMELRKIEKLRGKL-----TLPSKPSKLTIFVDDD--------KVNTKNIYEEIKAKTSSINSEQFKN------DSKEQIE--------FYQELSERLDRSKALKVQLETLKCR 590
            S  R +RER QPE+R   G L KKKD+K +  + ++ ++  I+K +K   D+N DE++  M+           DK  E   TE Q+++ +   +D++Y+  KL  E +KI++++G+L     +L  K +  T+FVD D        +V        +  + + + +E F+N       +KEQ+          Y EL +R++R+K L+V ++ L+ +
Sbjct:   12 SGQRQHRERSQPEARRKYGELEKKKDYK-LRAEDYQKKRDTIKKLKKSAMDKNQDEYHHHMVNSETWADGRHFDKKTEAEETETQIQKKLGSLKDLEYVKFKLNEEKKKIDEMKGELHFADSSLNGKGNTHTVFVDTDSEAKSFDPRVYFDTTTSMLSRQFNRLKNEDFQNKTIIGAGTKEQVRKADRVRRTRYNELIKRVERAKELQVVVDKLELK 227
[Close]
BLAST of U3 small nucleolar RNA-associated protein 11 vs. Ensembl Fly
Match: CG1789 (gene:FBgn0030063 transcript:FBtr0071251)

HSP 1 Score: 78.5666 bits (192), Expect = 2.667e-17
Identity = 51/123 (41.46%), Postives = 73/123 (59.35%), Query Frame = 3 
Query:   30 MGLIKKIQKSHNRIYRERPQPESREHLGILPKKKDFKQISKQRHKIQKKNIEKEKLIQDRNPDEFYFKM----LRKDKHPE----DAYTEDQVKEYMSRDIKYLDTKLTMELRKIEKLRGKLT 374
            M   K   KS+ +++RER QPESR+HLG L KKKD+K+ +    K QK      +  Q++NPDEFY  M    L  D+H E    D +T +Q+    ++D+KY+  K TME +KIE+L+  L 
Sbjct:    1 MSSWKNASKSNQKVHRERHQPESRQHLGFLEKKKDYKKRAIDAQKKQKTLKLLYRRAQNKNPDEFYHHMINSKLSNDEHHEKDTKDEHTPEQLALMQTQDLKYVVMKRTMERKKIERLKASLV 123
[Close]
BLAST of U3 small nucleolar RNA-associated protein 11 vs. Ensembl Zebrafish
Match: utp11 (UTP11 small subunit processome component [Source:ZFIN;Acc:ZDB-GENE-030131-8093])

HSP 1 Score: 73.9442 bits (180), Expect = 1.998e-15
Identity = 69/223 (30.94%), Postives = 109/223 (48.88%), Query Frame = 3 
Query:   30 MGLIKKIQKSHNRIYRERPQPESREHLGILPKKKDFKQISKQRHKIQKKNIEKEKLIQDRNPDEFYFKML------------RKDKHPEDAYTEDQVKEYMSRDIKYLDTKLTMELRKIEKLRGKLT-LPSKPSKLTIFVDDDKVNTKNI----------------YE-------EIKAKTSSINSEQFKNDSKEQIEFYQELSERLDRSKALKVQLETLKCR 590
            M   +K  KS  R ++ER Q   R+HLG+L KKKD+K  +   H+ +K  +   K   D+NPDEF FKM+            RKD    +  TE+Q K   ++DI+Y++ K   E++KIE+++ +L  L  K     +F  D K   KN                 Y        E K+   ++ + + K+ +K++ E Y  LSER+DR K + V  + ++ R
Sbjct:    1 MSSFRKALKSKQRDHKERSQLGFRKHLGLLEKKKDYKLRADDYHRKEKTILALRKKAMDKNPDEFNFKMIHNQLKDGVHMANRKD----EEMTEEQKKVMRTQDIRYVEMKRVSEMKKIERMKSELHFLDEKKKNKHVFFLDTKKEVKNFDLATHLNTVPELVDRAYNRPTIETLENKSIVGAMKAREIKSLAKKRNEQYLRLSERIDREKKMFVISQKIQTR 219
[Close]
BLAST of U3 small nucleolar RNA-associated protein 11 vs. Ensembl Zebrafish
Match: utp11 (UTP11 small subunit processome component [Source:ZFIN;Acc:ZDB-GENE-030131-8093])

HSP 1 Score: 73.9442 bits (180), Expect = 1.998e-15
Identity = 69/223 (30.94%), Postives = 109/223 (48.88%), Query Frame = 3 
Query:   30 MGLIKKIQKSHNRIYRERPQPESREHLGILPKKKDFKQISKQRHKIQKKNIEKEKLIQDRNPDEFYFKML------------RKDKHPEDAYTEDQVKEYMSRDIKYLDTKLTMELRKIEKLRGKLT-LPSKPSKLTIFVDDDKVNTKNI----------------YE-------EIKAKTSSINSEQFKNDSKEQIEFYQELSERLDRSKALKVQLETLKCR 590
            M   +K  KS  R ++ER Q   R+HLG+L KKKD+K  +   H+ +K  +   K   D+NPDEF FKM+            RKD    +  TE+Q K   ++DI+Y++ K   E++KIE+++ +L  L  K     +F  D K   KN                 Y        E K+   ++ + + K+ +K++ E Y  LSER+DR K + V  + ++ R
Sbjct:    1 MSSFRKALKSKQRDHKERSQLGFRKHLGLLEKKKDYKLRADDYHRKEKTILALRKKAMDKNPDEFNFKMIHNQLKDGVHMANRKD----EEMTEEQKKVMRTQDIRYVEMKRVSEMKKIERMKSELHFLDEKKKNKHVFFLDTKKEVKNFDLATHLNTVPELVDRAYNRPTIETLENKSIVGAMKAREIKSLAKKRNEQYLRLSERIDREKKMFVISQKIQTR 219
[Close]
BLAST of U3 small nucleolar RNA-associated protein 11 vs. Ensembl Xenopus
Match: utp11 (UTP11, small subunit processome component [Source:NCBI gene;Acc:733999])

HSP 1 Score: 65.4698 bits (158), Expect = 3.531e-12
Identity = 47/127 (37.01%), Postives = 69/127 (54.33%), Query Frame = 3 
Query:   33 GLIKKIQKSHNRIYRERPQPESREHLGILPKKKDFKQISKQRHKIQKKNIEKEKLIQDRNPDEFYFKMLRKDKH---------PEDAYTEDQVKEYMSRDIKYLDTKLTMELRKIEKLRGKLTLPSK 386
               +K  KS  R ++ER QP  R +LG+L KKKD+K  ++   K Q       K   D+NPDEFY+KM    +          PE+  T++Q K   ++DIKY++ K   E +KIE+L+ +L L  K
Sbjct:    3 AAFRKALKSRQREHKERSQPGFRRNLGLLEKKKDYKLRAEDHRKKQNTLNALRKKALDKNPDEFYYKMTSSKQQDGVHIIKQKPEEV-TDEQAKLMRTQDIKYVEMKRVAEAKKIERLKSELHLLDK 128
[Close]
BLAST of U3 small nucleolar RNA-associated protein 11 vs. Ensembl Xenopus
Match: utp11 (UTP11, small subunit processome component [Source:NCBI gene;Acc:733999])

HSP 1 Score: 65.4698 bits (158), Expect = 3.556e-12
Identity = 47/125 (37.60%), Postives = 71/125 (56.80%), Query Frame = 3 
Query:   33 GLIKKIQKSHNRIYRERPQPESREHLGILPKKKDFK-QISKQRHKIQKKNIEKEKLIQDRNPDEFYFKMLRKDKH---------PEDAYTEDQVKEYMSRDIKYLDTKLTMELRKIEKLRGKLTL 377
               +K  KS  R ++ER QP  R +LG+L KKKD+K +    R K    N  ++K + D+NPDEFY+KM    +          PE+  T++Q K   ++DIKY++ K   E +KIE+L+ +L L
Sbjct:    3 AAFRKALKSRQREHKERSQPGFRRNLGLLEKKKDYKLRAEDHRKKQNTLNALRKKAL-DKNPDEFYYKMTSSKQQDGVHIIKQKPEEV-TDEQAKLMRTQDIKYVEMKRVAEAKKIERLKSELHL 125
[Close]
BLAST of U3 small nucleolar RNA-associated protein 11 vs. Ensembl Mouse
Match: Utp11 (UTP11 small subunit processome component [Source:MGI Symbol;Acc:MGI:1914455])

HSP 1 Score: 68.9366 bits (167), Expect = 1.391e-13
Identity = 71/234 (30.34%), Postives = 111/234 (47.44%), Query Frame = 3 
Query:   33 GLIKKIQKSHNRIYRERPQPESREHLGILPKKKDFKQISKQRHKIQK--KNIEKEKLIQDRNPDEFYFKMLRKD--------KHPEDAYTEDQVKEYMSRDIKYLDTKLTMELRKIEKLRGKLTL---PSKPSKLTIFVDDDK-------VNTK---------NIY----------EEIKAKTSSINSEQFKNDSKEQIEFYQELSERLDRSKALKVQLETLKCRYTILSKKDK 617
               +K  K+  R +RER QP  R+ LG+L KKKD+K  +   HK Q   + + K+ L  ++NPDEFY+KM R          K  ++  T +Q+K   ++DIKY++ K   E +KIE+L+ +L L     K  K  +F  D K       V T           +Y          E +K  T        K  +KE+ + Y  L++R++R K L V  + ++ R  ++ K  K
Sbjct:    3 AAFRKAAKTRQREHRERSQPGFRKRLGLLEKKKDYKLRANDYHKKQDFLRALRKKAL--EKNPDEFYYKMTRAKLQDGVHIFKENKEEVTAEQLKLMRTQDIKYIEMKRVAEAKKIERLKSELHLLDFQGKQQKKHVFFFDTKKEVERFDVATHLQTAPELVDRVYNRPRIETLQKERVKGATPQTG---LKRIAKERQKQYDCLTQRIEREKQLFVVAQKIQTRKDLMDKTQK 231
[Close]
BLAST of U3 small nucleolar RNA-associated protein 11 vs. UniProt/SwissProt
Match: sp|Q9W3C0|UTP11_DROME (Probable U3 small nucleolar RNA-associated protein 11 OS=Drosophila melanogaster OX=7227 GN=CG1789 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.673e-16
Identity = 51/123 (41.46%), Postives = 73/123 (59.35%), Query Frame = 3 
Query:   30 MGLIKKIQKSHNRIYRERPQPESREHLGILPKKKDFKQISKQRHKIQKKNIEKEKLIQDRNPDEFYFKM----LRKDKHPE----DAYTEDQVKEYMSRDIKYLDTKLTMELRKIEKLRGKLT 374
            M   K   KS+ +++RER QPESR+HLG L KKKD+K+ +    K QK      +  Q++NPDEFY  M    L  D+H E    D +T +Q+    ++D+KY+  K TME +KIE+L+  L 
Sbjct:    1 MSSWKNASKSNQKVHRERHQPESRQHLGFLEKKKDYKKRAIDAQKKQKTLKLLYRRAQNKNPDEFYHHMINSKLSNDEHHEKDTKDEHTPEQLALMQTQDLKYVVMKRTMERKKIERLKASLV 123
[Close]
BLAST of U3 small nucleolar RNA-associated protein 11 vs. UniProt/SwissProt
Match: sp|Q8R5K5|UTP11_RAT (Probable U3 small nucleolar RNA-associated protein 11 OS=Rattus norvegicus OX=10116 GN=Utp11 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.178e-13
Identity = 70/231 (30.30%), Postives = 113/231 (48.92%), Query Frame = 3 
Query:   33 GLIKKIQKSHNRIYRERPQPESREHLGILPKKKDFKQISKQRHKIQK--KNIEKEKLIQDRNPDEFYFKMLRKD--------KHPEDAYTEDQVKEYMSRDIKYLDTKLTMELRKIEKLRGKLTL----PSKPSKLTIFVDD--------------------DKVNTKNIYEEI-KAKTSSI-NSEQFKNDSKEQIEFYQELSERLDRSKALKVQLETLKCRYTILSKKDK 617
               +K  KS  R YRER QP  R+HLG+L KKKD+K  +    K Q+  K + K+ L  ++NPDEFY+KM R          K  ++  T +Q+K   ++D+KY++ K   E +KIE+L+ +L L      + ++   F D                     D+V  +   E + K K   + N    K  +KE+ + Y  L++R++R K L V  + ++ R  ++ K  K
Sbjct:    3 AAFRKAVKSRQREYRERSQPGFRKHLGLLEKKKDYKLRADDYRKKQEYLKALRKKAL--EKNPDEFYYKMTRVKLQDGVHIIKETKEEVTPEQLKLMRTQDVKYIEMKRVAEAKKIERLKSELHLLDFQGKQQNRHVFFFDTKKEVEQFDVAAHLQTAPELVDRVFNRPRIETLQKEKVKGVTNQTGLKRIAKERQKQYNCLTQRIEREKKLFVIAQKIQTRKDLMDKTQK 231
[Close]
BLAST of U3 small nucleolar RNA-associated protein 11 vs. UniProt/SwissProt
Match: sp|Q9Y3A2|UTP11_HUMAN (Probable U3 small nucleolar RNA-associated protein 11 OS=Homo sapiens OX=9606 GN=UTP11 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 4.653e-13
Identity = 70/231 (30.30%), Postives = 110/231 (47.62%), Query Frame = 3 
Query:   33 GLIKKIQKSHNRIYRERPQPESREHLGILPKKKDFKQISKQRHKIQK--KNIEKEKLIQDRNPDEFYFKMLRKD--------KHPEDAYTEDQVKEYMSRDIKYLDTKLTMELRKIEKLRGKLTL----PSKPSKLTIFVD---------------------DDKVNTKNIYEEIKAKTSSI-NSEQFKNDSKEQIEFYQELSERLDRSKALKVQLETLKCRYTILSKKDK 617
               +K  KS  R +RER QP  R+HLG+L KKKD+K  +    K Q+  K + K+ L  ++NPDEFY+KM R          K  ++  T +Q+K   ++D+KY++ K   E +KIE+L+ +L L      + +K   F D                     D   N   I    K K   + N    K  +KE+ + Y  L++R++R K L V  + ++ R  ++ K  K
Sbjct:    3 AAFRKAAKSRQREHRERSQPGFRKHLGLLEKKKDYKLRADDYRKKQEYLKALRKKAL--EKNPDEFYYKMTRVKLQDGVHIIKETKEEVTPEQLKLMRTQDVKYIEMKRVAEAKKIERLKSELHLLDFQGKQQNKHVFFFDTKKEVEQFDVATHLQTAPELVDRVFNRPRIETLQKEKVKGVTNQTGLKRIAKERQKQYNCLTQRIEREKKLFVIAQKIQTRKDLMDKTQK 231
[Close]
BLAST of U3 small nucleolar RNA-associated protein 11 vs. UniProt/SwissProt
Match: sp|Q9CZJ1|UTP11_MOUSE (Probable U3 small nucleolar RNA-associated protein 11 OS=Mus musculus OX=10090 GN=Utp11 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 9.730e-13
Identity = 71/234 (30.34%), Postives = 111/234 (47.44%), Query Frame = 3 
Query:   33 GLIKKIQKSHNRIYRERPQPESREHLGILPKKKDFKQISKQRHKIQK--KNIEKEKLIQDRNPDEFYFKMLRKD--------KHPEDAYTEDQVKEYMSRDIKYLDTKLTMELRKIEKLRGKLTL---PSKPSKLTIFVDDDK-------VNTK---------NIY----------EEIKAKTSSINSEQFKNDSKEQIEFYQELSERLDRSKALKVQLETLKCRYTILSKKDK 617
               +K  K+  R +RER QP  R+ LG+L KKKD+K  +   HK Q   + + K+ L  ++NPDEFY+KM R          K  ++  T +Q+K   ++DIKY++ K   E +KIE+L+ +L L     K  K  +F  D K       V T           +Y          E +K  T        K  +KE+ + Y  L++R++R K L V  + ++ R  ++ K  K
Sbjct:    3 AAFRKAAKTRQREHRERSQPGFRKRLGLLEKKKDYKLRANDYHKKQDFLRALRKKAL--EKNPDEFYYKMTRAKLQDGVHIFKENKEEVTAEQLKLMRTQDIKYIEMKRVAEAKKIERLKSELHLLDFQGKQQKKHVFFFDTKKEVERFDVATHLQTAPELVDRVYNRPRIETLQKERVKGATPQTG---LKRIAKERQKQYDCLTQRIEREKQLFVVAQKIQTRKDLMDKTQK 231
[Close]
BLAST of U3 small nucleolar RNA-associated protein 11 vs. UniProt/SwissProt
Match: sp|Q8S1Z1|UTP11_ORYSJ (Probable U3 small nucleolar RNA-associated protein 11 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0810000 PE=2 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 4.606e-12
Identity = 56/175 (32.00%), Postives = 92/175 (52.57%), Query Frame = 3 
Query:   66 RIYRERPQPESREHLGILPKKKDFKQISKQRHKIQKKNIEKEKLIQDRNPDEFYFKM--------LRKDKHPEDAYTEDQVKEYMSRDIKYLDTKLTMELRKIEKLRGKL-TLPSKPSKLTIFVDDDKVNTKNIYEEIKAKTSSINSEQFKNDSKEQ-IEFYQELSERLDRSKAL 560
            R ++ER QPESR+  G+L K KD+   +K  H+ ++   + ++    RNPDEFYFKM        + + K   + YTED++    ++D+ Y+   +  E +KIEKL   L  L +K     ++  +D+   K I   I+ K+SS+  +   +  K +    Y+EL ER  R + L
Sbjct:   11 RAHKERAQPESRKKFGLLEKHKDYIVRAKAFHQKEETIRKLKEKASFRNPDEFYFKMINSKTVDGIHRPKPEANKYTEDELMLLKTKDMGYILQGIQSEKKKIEKLSSMLHELDNKRPNKHVYFAEDREEVKEIQSRIEQKSSSLGLDNIPSRIKRKTASSYRELEERKQRVQKL 185
[Close]
BLAST of U3 small nucleolar RNA-associated protein 11 vs. TrEMBL
Match: K1QF22 (U3 small nucleolar RNA-associated protein 11 OS=Crassostrea gigas OX=29159 GN=CGI_10021135 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.679e-26
Identity = 89/250 (35.60%), Postives = 135/250 (54.00%), Query Frame = 3 
Query:   30 MGLIKKIQKSHNRIYRERPQPESREHLGILPKKKDFKQISK--QRHKIQKKNIEKEKLIQDRNPDEFYFKMLRKDK---------HPEDAYTEDQVKEYMSRDIKYLDTKLTMELRKIEKLRGKLTL----PSKPSKLTIFVDDDK-----------------VN---TKNIYEEIK--AKTSSINSEQFKNDSKEQIEFYQELSERLDRSKALKVQLETLKCRYTILSKKDKKYKMIQEPTKTQAPIVK 668
            M  ++K  KSH R Y+ER QP SR HLG L KKKD+K+ ++  QR +   K ++++ L  +RNPDEFYF M++  K           E  +TE ++K   S+D KY+  K T EL KIE+L+  L L     +  +K  +FVD DK                 VN    ++  E +K      ++N E  K  SKE+ + Y+EL +R+ R K L V  + ++ +  ++ KKDK+ K +QE TK+ AP+ +
Sbjct:    1 MASLRKASKSHARSYKERSQPASRAHLGFLEKKKDYKERAEDFQRKQNTIKRLKRKAL--NRNPDEFYFNMVKTQKLDGVHQEKEEAEPVHTEAELKLMFSQDQKYVTMKRTSELNKIERLKSSLHLVDNDTAPQNKHIVFVDTDKEVKEFDAAKHFGTHPSLVNRRFNRSSLESLKKLELRGNLNEEDLKKVSKEKEQRYRELVKRIQREKDLHVIQQKMEMKKNLMDKKDKRTK-LQEETKSSAPVYR 247
[Close]
BLAST of U3 small nucleolar RNA-associated protein 11 vs. TrEMBL
Match: A0A1S3I255 (U3 small nucleolar RNA-associated protein 11 OS=Lingula unguis OX=7574 GN=LOC106160321 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.468e-25
Identity = 88/251 (35.06%), Postives = 138/251 (54.98%), Query Frame = 3 
Query:   30 MGLIKKIQKSHNRIYRERPQPESREHLGILPKKKDFK--QISKQRHKIQKKNIEKEKLIQDRNPDEFYFKM----LRKDKHPED----AYTEDQVKEYMSRDIKYLDTKLTMELRKIEKLRGKLTL---PSKP-SKLTIFVDD-------DKVNTKNIYEEIKAKT---------------SSINSEQFKNDSKEQIEFYQELSERLDRSKALKVQLETLKCRYTILSKKDKKYKMIQEPTKTQAPIVKRL 674
            M   K  +KSH + +RER QP SR HLG+L KKKD+K      QR +   K+++K+ L  D+NPDEFYFKM    L++  H  D    AY+E+Q+K   S+D+KY++ K + EL+KIEKL+G L L     KP +K T FVD        D     N +  +  +T               S ++ +  +  ++E+ + Y+ELS+R++R + L V  + ++ +  ++ KK +K K+  E TK  A + K +
Sbjct:    1 MSTFKNAKKSHQKTHRERNQPSSRAHLGLLEKKKDYKLRATDYQRKQATIKSLKKKAL--DKNPDEFYFKMVNTRLKEGVHQNDDSPPAYSEEQLKLMQSQDLKYINYKRSTELKKIEKLKGSLHLLEGEEKPKNKHTFFVDSKKEAKSFDVAKRFNTHPSLLGRTYNRPTLDMLKTQTYQSGLDQDTVQEFAEERKKKYKELSKRIERERHLHVIAQKMEMKKLLMDKKARKKKVADE-TKEMAAVYKWM 248
[Close]
BLAST of U3 small nucleolar RNA-associated protein 11 vs. TrEMBL
Match: A0A0X3NYB1 (U3 small nucleolar RNA-associated protein 11 OS=Schistocephalus solidus OX=70667 GN=UTP11 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 3.459e-24
Identity = 84/242 (34.71%), Postives = 127/242 (52.48%), Query Frame = 3 
Query:   39 IKKIQKSHNRIYRERPQPESREHLGILPKKKDFKQISKQRHKIQKKNIEKE--KLIQDRNPDEFYFKM----LRKDK-----HPEDAYTEDQVKEYMSRDIKYLDTKLTMELRKIEKLRGKLT-LPSKPS--------KLTIFVDDDKVNTKNIYEEIKAKTSSINS-------EQFKNDSKEQI-----EFYQELSERLDRSKALKVQLETLKCRYTILSKKDKKYKMIQEPTKTQAPIVK 668
             K IQK + R++RER QP +R  LGILPKKKDF  I + R +  K+N  +E  +    +N DEFYF M    L  +K     + E  Y+E  +KE ++ D+ +L+ +L +E+ KI  L  +L  LP+ PS        K T+FV           EE +   SS+ +        + KND  E+        Y+ELSERLDR++ LK+ ++    +Y +L+ K  +YK+  + TK   P+ K
Sbjct:    6 FKNIQKKNARLHRERAQPAARAKLGILPKKKDF--ILRSRDEESKRNRIRELKRKALTKNEDEFYFAMQNSKLTAEKGYTPLNTEKEYSEVVLKEMLTHDVSFLNRELQIEISKIADLESRLNLLPADPSVTSKRLGPKRTVFVGS--------VEEARVVKSSLETTVPTRVCAKLKNDELEEFMSLQENGYRELSERLDRAEKLKLAIQQRAAKYNVLNNKSVRYKVESKATKHHPPVYK 237
[Close]
BLAST of U3 small nucleolar RNA-associated protein 11 vs. TrEMBL
Match: A0A067RCZ4 (U3 small nucleolar RNA-associated protein 11 OS=Zootermopsis nevadensis OX=136037 GN=L798_03515 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.973e-23
Identity = 86/250 (34.40%), Postives = 133/250 (53.20%), Query Frame = 3 
Query:   30 MGLIKKIQKSHNRIYRERPQPESREHLGILPKKKDFKQISKQRHKIQK--KNIEKEKLIQDRNPDEFYFKMLRKDKHPEDA----------YTEDQVKEYMSRDIKYLDTKLTMELRKIEKLRGKLTL--PSKPSKLT-IFVDDDKVNTKNI---------YEEIKAKTSSINSEQFKNDS-------------KEQIEFYQELSERLDRSKALKVQLETLKCRYTILSKKDKKYKMIQEPTKTQAPIVK 668
            M   KK+ K++  ++RER QPESR HLG+L KKKD++Q +   H+ Q+  K +++  L  DRNPDEFYF M+  + H ED           +T DQ++   S+DI+Y+ TK T+E RKI +L+ +L L   +  SK T +F  D K   K              +K + + + +   KN S              E+ + Y EL +R+DR K L+V  + L+ +  +L+KK+ K + I+  TK   PI +
Sbjct:    1 MSSWKKVSKTNQHVHRERHQPESRVHLGLLEKKKDYRQRAIDYHEKQRTLKLLKRRAL--DRNPDEFYFHMI--NSHVEDGEHKELEKDDEHTPDQIRLMQSQDIRYVTTKRTIEARKINRLQSQLHLLEAANQSKNTHVFFVDTKKEAKQFDVAKQLDTHPAMLKRRINRLRTATLKNMSLPEMDEAALEKLTAERDKAYIELEKRIDREKELRVIQQKLEIKRHLLNKKESKPERIKPSTKNTPPIYR 246
[Close]
BLAST of U3 small nucleolar RNA-associated protein 11 vs. TrEMBL
Match: A0A182S705 (U3 small nucleolar RNA-associated protein 11 OS=Anopheles maculatus OX=74869 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 4.432e-23
Identity = 77/248 (31.05%), Postives = 134/248 (54.03%), Query Frame = 3 
Query:   30 MGLIKKIQKSHNRIYRERPQPESREHLGILPKKKDFKQISKQRHKIQK--KNIEKEKLIQDRNPDEFYFKMLR----KDKHPE----DAYTEDQVKEYMSRDIKYLDTKLTMELRKIEKLRGKLTLPS----KPSKLTIFVDDD---------------------KVNTKNIYEEIKAKTSSINSEQFKNDSKEQIEFYQELSERLDRSKALKVQLETLKCRYTILSKKDKKYKMIQEPTKTQAPIVK 668
            M   KK  KS+ +++RER QP +R+HLG+L KKKD+KQ ++ R++ +   K + K  L  ++NPDEFY  M+     + +H E    D +T+DQ+K   ++D+KY+  K TME  KI +L+G+L +       P+    FV+D+                     + N   + +  K + +S++++  +  ++E+ + Y EL  R+DR K L V  +TL+ +  +  ++  K K++ + T  QAP  K
Sbjct:    1 MSSWKKAAKSNQKVHRERAQPSARQHLGLLEKKKDYKQRARDRNEKEATLKLLRKRAL--NKNPDEFYHHMINSKIEQGEHHELEQGDDFTKDQIKLMQTQDLKYVTMKRTMESNKIRRLQGQLHMTDVVNETPNNHIFFVEDEQEANEFDLAKRLDTHPQLIGRRSNRPRLSDLEKLQLASVSADDIERINRERGQSYGELMRRIDREKELTVVQKTLEIKRALKQRRALKPKLVAKGTPHQAPQFK 246
[Close]
BLAST of U3 small nucleolar RNA-associated protein 11 vs. Ensembl Cavefish
Match: utp11 (UTP11 small subunit processome component [Source:NCBI gene;Acc:103024137])

HSP 1 Score: 69.707 bits (169), Expect = 6.442e-14
Identity = 77/246 (31.30%), Postives = 119/246 (48.37%), Query Frame = 3 
Query:   30 MGLIKKIQKSHNRIYRERPQPESREHLGILPKKKDFKQISKQRHKIQKKNIEKEKLIQDRNPDEFYFKMLR---KD-----KHPEDAYTEDQVKEYMSRDIKYLDTKLTMELRKIEKLRGKLTL----PSKPSKLTIFVDD-------DKVNTKNIYEEIKAKT---------------SSINSEQFKNDSKEQIEFYQELSERLDRSKALKVQLETLKCRYTILSKKDKKYKMIQEPTKTQAPIV 665
            M   +K  KS  R ++ER QP  R HLG+L KKKD+K  +   H+ +       +   D+NPDEF+FKM R   KD     +  E+  TE+Q K   ++DI+Y++ K   E +KIE+L+ +L L      K +K T FVD        D     N   E+  +T                +++ +  K  +K++   Y+ LS+R+DR K + V  + ++ R  +  K  K  KM +E     AP V
Sbjct:    1 MSSFRKALKSKQRDHKERSQPGFRNHLGLLEKKKDYKLRADDFHRKENTINALRRKAMDKNPDEFHFKMTRTQLKDGVHLVEQKEEEMTEEQKKIMRTQDIRYVEMKRVAEAKKIERLKSELHLLDAEGKKQNKHTFFVDTKKEVDEFDLATHLNTAPELVERTYNRPTLDTLANKSIMGAVDPKTVKRLAKQRKSQYELLSQRIDREKKMFVMTQKIQTRKDLQDKNKKVRKMRKET--PSAPAV 244
[Close]
BLAST of U3 small nucleolar RNA-associated protein 11 vs. Ensembl Sea Lamprey
Match: utp11 (UTP11 small subunit processome component [Source:ZFIN;Acc:ZDB-GENE-030131-8093])

HSP 1 Score: 84.3445 bits (207), Expect = 5.747e-20
Identity = 77/247 (31.17%), Postives = 128/247 (51.82%), Query Frame = 3 
Query:   30 MGLIKKIQKSHNRIYRERPQ-PESREHLGILPKKKDFKQISKQRHKIQK--KNIEKEKLIQDRNPDEFYFKMLRKD-----KHPEDA-YTEDQVKEYMSRDIKYLDTKLTMELRKIEKLRGKLTLPSKPSKL----TIFVDDDK-VNTKNIYEEIKA-----------------KTSSINS----EQFKNDSKEQIEFYQELSERLDRSKALKVQLETLKCRYTILSKKDKKYKM-IQEPTKTQAPI 662
            M   KK  KS+ R +RER Q P +R  LG+L KKKD+K  ++  H+ Q   K + ++ L  D+NPDEFYFKM  +D     K+P D   T DQ+K   +RD++Y++ K   E +KIE+++G+L L +   K     T +VD  + V   N+ E ++                  +T+++         KN ++++   Y+ L  R+ R   L V  + ++ R  ++   DK+ K+ ++  TKT A +
Sbjct:    2 MSSYKKAMKSNQREHRERSQQPTARRGLGLLEKKKDYKLRAQNWHRKQDFLKGLRRKAL--DKNPDEFYFKMSLQDGVHLKKNPADEETTPDQLKLMRTRDLRYVEMKRVAEAKKIERMKGELHLLNANGKQRNRHTFYVDTKQDVEQFNLAERLQTAPELVRCVNDRPRLDTLRTATLQGVTDENTIKNLARQRAREYRNLERRIVRESTLFVTQQKIQTRMDLM---DKRQKIKVKAETKTSAAV 243
[Close]
BLAST of U3 small nucleolar RNA-associated protein 11 vs. Ensembl Yeast
Match: UTP11 (Subunit of U3-containing Small Subunit (SSU) processome complex; involved in production of 18S rRNA and assembly of small ribosomal subunit [Source:SGD;Acc:S000001582])

HSP 1 Score: 51.2174 bits (121), Expect = 2.188e-8
Identity = 46/140 (32.86%), Postives = 73/140 (52.14%), Query Frame = 3 
Query:   36 LIKKIQKSHNRIYRERPQPESREHLGILPKKKDFKQISKQRHKIQKK-NIEKEKLIQDRNPDEFYFKM----------LRKDKHP---EDAYTEDQVKEYMSRDIKYLDTKLTMELRKIEKLRGKLTLPSKPSKLTIFVD 413
            L+  +QK   + +RER Q  SR   G L K KD+ + ++  H+ Q    + +EK  ++RNPDE+Y  M          L   +H    +++ + DQVK   ++D  Y+ T   +EL+K+EK   +L   S  +  TIFVD
Sbjct:    4 LVHDVQK---KQHRERSQLTSRSRYGFLEKHKDYVKRAQDFHRKQSTLKVLREK-AKERNPDEYYHAMHSRKTDAKGLLISSRHGDEEDESLSMDQVKLLKTQDSNYVRTLRQIELKKLEKGAKQLMFKSSGNH-TIFVD 138
[Close]
BLAST of U3 small nucleolar RNA-associated protein 11 vs. Ensembl Nematostella
Match: EDO33548 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SRW1])

HSP 1 Score: 73.559 bits (179), Expect = 8.945e-16
Identity = 52/145 (35.86%), Postives = 87/145 (60.00%), Query Frame = 3 
Query:   30 MGLIKKIQKSHNRIYRERPQPESREHLGILPKKKDFKQISKQRHKIQKK--NIEKEKLIQDRNPDEFYFKMLR---KDK--HPEDA--YTEDQVKEYMSRDIKYLDTKLTMELRKIEKLRGKLTL-----PSKPSKLTIFVDDDK 422
            M    K +KS+ + ++ER Q ++R HLG+L K KD+   ++  HK ++K  N+ ++ L  ++NPDEFYFKM+    KD   H +    +T DQ+K   ++D+ Y+++K T E +KIE+L+  L L        P++  +FVD+ K
Sbjct:    1 MSAFAKAKKSYQKNHKERGQLKNRHHLGLLEKHKDYVLRARDYHKKKEKLKNLREKAL--NKNPDEFYFKMISTKTKDGVHHVKQGKQHTADQLKLMKAQDLNYVNSKKTAEAKKIERLQASLHLLESSDGGPPNQHIVFVDNKK 143
[Close]
BLAST of U3 small nucleolar RNA-associated protein 11 vs. Ensembl Nematostella
Match: EDO25510 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A8DW99])

HSP 1 Score: 43.5134 bits (101), Expect = 2.201e-6
Identity = 20/33 (60.61%), Postives = 25/33 (75.76%), Query Frame = 3 
Query:   66 RIYRERPQPESREHLGILPKKKDFKQISKQRHK 164
            R YRER QP SR HLGIL KK+D+++ +K  HK
Sbjct:   12 RKYRERAQPSSRAHLGILEKKQDYQKRAKNYHK 44
[Close]
BLAST of U3 small nucleolar RNA-associated protein 11 vs. Ensembl Medaka
Match: utp11 (UTP11 small subunit processome component [Source:NCBI gene;Acc:101174775])

HSP 1 Score: 77.7962 bits (190), Expect = 6.161e-17
Identity = 68/222 (30.63%), Postives = 106/222 (47.75%), Query Frame = 3 
Query:   30 MGLIKKIQKSHNRIYRERPQPESREHLGILPKKKDFKQISKQRHKIQKKNIEKEKLIQDRNPDEFYFKMLRK---------DKHPEDAYTEDQVKEYMSRDIKYLDTKLTMELRKIEKLRGKLTL----PSKPSKLTIFVDD-------DKVNTKNIYEEI---------------KAKTSSINSEQFKNDSKEQIEFYQELSERLDRSKALKVQLETLKCR 590
            M   +K  KS  + + ER QP  R+HLG+L KKKD+K  +   HK Q       K   ++NPDEFY KM+            K  E+  TE+Q K   ++DI Y++ K   E +KIE+L+G+L L      + +K T FVD        D  N  N+  E+               K+   ++     K  ++E+   Y+ LS+R+DR K + +  + ++ R
Sbjct:    1 MSSFRKALKSRQKNHHERSQPGFRKHLGLLEKKKDYKLRADDYHKKQNTLTALRKKALEKNPDEFYHKMINAKLEDGVHIMKKGQEEVMTEEQKKMMRTQDIGYVEMKRVAETKKIERLKGELHLLDAEGKQRNKHTFFVDSKNEVETFDLANHLNVPPELLDRVYNRPTLQTLETKSIKGAVEPGSIKKLARERKHQYRILSQRIDREKKMFIISQKIQTR 222
[Close]
BLAST of U3 small nucleolar RNA-associated protein 11 vs. Planmine SMEST
Match: SMESG000012202.1 (SMESG000012202.1)

HSP 1 Score: 426.787 bits (1096), Expect = 4.649e-154
Identity = 215/215 (100.00%), Postives = 215/215 (100.00%), Query Frame = 3 
Query:   30 MGLIKKIQKSHNRIYRERPQPESREHLGILPKKKDFKQISKQRHKIQKKNIEKEKLIQDRNPDEFYFKMLRKDKHPEDAYTEDQVKEYMSRDIKYLDTKLTMELRKIEKLRGKLTLPSKPSKLTIFVDDDKVNTKNIYEEIKAKTSSINSEQFKNDSKEQIEFYQELSERLDRSKALKVQLETLKCRYTILSKKDKKYKMIQEPTKTQAPIVKRL 674
            MGLIKKIQKSHNRIYRERPQPESREHLGILPKKKDFKQISKQRHKIQKKNIEKEKLIQDRNPDEFYFKMLRKDKHPEDAYTEDQVKEYMSRDIKYLDTKLTMELRKIEKLRGKLTLPSKPSKLTIFVDDDKVNTKNIYEEIKAKTSSINSEQFKNDSKEQIEFYQELSERLDRSKALKVQLETLKCRYTILSKKDKKYKMIQEPTKTQAPIVKRL
Sbjct:    1 MGLIKKIQKSHNRIYRERPQPESREHLGILPKKKDFKQISKQRHKIQKKNIEKEKLIQDRNPDEFYFKMLRKDKHPEDAYTEDQVKEYMSRDIKYLDTKLTMELRKIEKLRGKLTLPSKPSKLTIFVDDDKVNTKNIYEEIKAKTSSINSEQFKNDSKEQIEFYQELSERLDRSKALKVQLETLKCRYTILSKKDKKYKMIQEPTKTQAPIVKRL 215
The following BLAST results are available for this feature:
BLAST of U3 small nucleolar RNA-associated protein 11 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 1
Match NameE-valueIdentityDescription
UTP119.690e-1430.30UTP11 small subunit processome component [Source:H... [more]
back to top
BLAST of U3 small nucleolar RNA-associated protein 11 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 1
Match NameE-valueIdentityDescription
C16C10.21.399e-1128.57Probable U3 small nucleolar RNA-associated protein... [more]
back to top
BLAST of U3 small nucleolar RNA-associated protein 11 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 1
Match NameE-valueIdentityDescription
CG17892.667e-1741.46gene:FBgn0030063 transcript:FBtr0071251[more]
back to top
BLAST of U3 small nucleolar RNA-associated protein 11 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 2
Match NameE-valueIdentityDescription
utp111.998e-1530.94UTP11 small subunit processome component [Source:Z... [more]
utp111.998e-1530.94UTP11 small subunit processome component [Source:Z... [more]
back to top
BLAST of U3 small nucleolar RNA-associated protein 11 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 2
Match NameE-valueIdentityDescription
utp113.531e-1237.01UTP11, small subunit processome component [Source:... [more]
utp113.556e-1237.60UTP11, small subunit processome component [Source:... [more]
back to top
BLAST of U3 small nucleolar RNA-associated protein 11 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 1
Match NameE-valueIdentityDescription
Utp111.391e-1330.34UTP11 small subunit processome component [Source:M... [more]
back to top
BLAST of U3 small nucleolar RNA-associated protein 11 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|Q9W3C0|UTP11_DROME2.673e-1641.46Probable U3 small nucleolar RNA-associated protein... [more]
sp|Q8R5K5|UTP11_RAT2.178e-1330.30Probable U3 small nucleolar RNA-associated protein... [more]
sp|Q9Y3A2|UTP11_HUMAN4.653e-1330.30Probable U3 small nucleolar RNA-associated protein... [more]
sp|Q9CZJ1|UTP11_MOUSE9.730e-1330.34Probable U3 small nucleolar RNA-associated protein... [more]
sp|Q8S1Z1|UTP11_ORYSJ4.606e-1232.00Probable U3 small nucleolar RNA-associated protein... [more]
back to top
BLAST of U3 small nucleolar RNA-associated protein 11 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
K1QF223.679e-2635.60U3 small nucleolar RNA-associated protein 11 OS=Cr... [more]
A0A1S3I2551.468e-2535.06U3 small nucleolar RNA-associated protein 11 OS=Li... [more]
A0A0X3NYB13.459e-2434.71U3 small nucleolar RNA-associated protein 11 OS=Sc... [more]
A0A067RCZ41.973e-2334.40U3 small nucleolar RNA-associated protein 11 OS=Zo... [more]
A0A182S7054.432e-2331.05U3 small nucleolar RNA-associated protein 11 OS=An... [more]
back to top
BLAST of U3 small nucleolar RNA-associated protein 11 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 1
Match NameE-valueIdentityDescription
utp116.442e-1431.30UTP11 small subunit processome component [Source:N... [more]
back to top
BLAST of U3 small nucleolar RNA-associated protein 11 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 1
Match NameE-valueIdentityDescription
utp115.747e-2031.17UTP11 small subunit processome component [Source:Z... [more]
back to top
BLAST of U3 small nucleolar RNA-associated protein 11 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 1
Match NameE-valueIdentityDescription
UTP112.188e-832.86Subunit of U3-containing Small Subunit (SSU) proce... [more]
back to top
BLAST of U3 small nucleolar RNA-associated protein 11 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 2
Match NameE-valueIdentityDescription
EDO335488.945e-1635.86Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO255102.201e-660.61Predicted protein [Source:UniProtKB/TrEMBL;Acc:A8... [more]
back to top
BLAST of U3 small nucleolar RNA-associated protein 11 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 1
Match NameE-valueIdentityDescription
utp116.161e-1730.63UTP11 small subunit processome component [Source:N... [more]
back to top
BLAST of U3 small nucleolar RNA-associated protein 11 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 1
Match NameE-valueIdentityDescription
SMESG000012202.14.649e-154100.00SMESG000012202.1[more]
back to top
Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30012225 ID=SMED30012225|Name=U3 small nucleolar RNA-associated protein 11|organism=Schmidtea mediterranea sexual|type=transcript|length=704bp
TTGATATTTATTTGAGAATTTAAAAAAATATGGGTCTAATAAAGAAAATT
CAAAAAAGTCATAATAGGATTTATAGAGAAAGGCCGCAGCCTGAGAGTCG
TGAGCATCTTGGTATATTGCCAAAAAAGAAAGATTTCAAACAAATTTCAA
AACAAAGACACAAAATACAAAAGAAGAATATAGAAAAAGAAAAATTAATT
CAAGATCGTAATCCAGATGAATTTTATTTTAAAATGTTGAGAAAGGATAA
GCACCCAGAAGATGCCTATACTGAAGATCAGGTTAAGGAATACATGAGTC
GAGATATTAAATATCTCGATACCAAATTAACTATGGAATTACGAAAAATT
GAAAAGCTTCGTGGAAAACTAACGCTACCATCCAAGCCATCGAAATTAAC
GATTTTTGTTGATGATGACAAAGTAAACACCAAAAATATATACGAAGAAA
TCAAAGCTAAAACTTCGTCAATTAATTCCGAGCAATTTAAAAATGATTCC
AAAGAACAAATTGAATTCTATCAAGAATTATCTGAAAGGTTGGATAGGTC
AAAAGCTCTTAAAGTTCAGCTGGAAACTTTAAAATGCCGATATACAATTT
TGAGTAAGAAAGATAAGAAGTACAAAATGATTCAGGAACCCACAAAAACT
CAAGCGCCAATTGTTAAACGTCTTTAAATAAATTTTTTTGTATTTTCAAA
AAAA
back to top

protein sequence of SMED30012225-orf-1

>SMED30012225-orf-1 ID=SMED30012225-orf-1|Name=SMED30012225-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=216bp
MGLIKKIQKSHNRIYRERPQPESREHLGILPKKKDFKQISKQRHKIQKKN
IEKEKLIQDRNPDEFYFKMLRKDKHPEDAYTEDQVKEYMSRDIKYLDTKL
TMELRKIEKLRGKLTLPSKPSKLTIFVDDDKVNTKNIYEEIKAKTSSINS
EQFKNDSKEQIEFYQELSERLDRSKALKVQLETLKCRYTILSKKDKKYKM
IQEPTKTQAPIVKRL*
back to top
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0002109X1 cell
Vocabulary: INTERPRO
TermDefinition
IPR007144SSU_processome_Utp11
Vocabulary: cellular component
TermDefinition
GO:0032040small-subunit processome
GO:0005634nucleus
GO:0005730nucleolus
Vocabulary: biological process
TermDefinition
GO:0006364rRNA processing
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 39..59
NoneNo IPR availableCOILSCoilCoilcoord: 164..184
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..53
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 13..36
IPR007144Small-subunit processome, Utp11PIRSFPIRSF015952U3snoRNP11coord: 1..214
e-value: 3.5E-22
score: 76.9
IPR007144Small-subunit processome, Utp11PFAMPF03998Utp11coord: 13..208
e-value: 2.7E-27
score: 96.3
IPR007144Small-subunit processome, Utp11PANTHERPTHR12838U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 11coord: 5..212