G_PROTEIN_RECEP_F1_2 domain-containing protein

Overview
NameG_PROTEIN_RECEP_F1_2 domain-containing protein
Smed IDSMED30011980
Length (bp)1449
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of G_PROTEIN_RECEP_F1_2 domain-containing protein (SMED30011980) t-SNE clustered cells

Violin plots show distribution of expression levels for G_PROTEIN_RECEP_F1_2 domain-containing protein (SMED30011980) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of G_PROTEIN_RECEP_F1_2 domain-containing protein (SMED30011980) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for G_PROTEIN_RECEP_F1_2 domain-containing protein (SMED30011980) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020




SMED30011980

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 5

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
nervous systemSMED30011980SMESG000060945.1 dd_Smed_v4_14651_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30011980SMESG000060945.1 dd_Smed_v4_14651_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
non-ciliated neuronSMED30011980SMESG000060945.1 dd_Smed_v4_14651_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cilated neuronSMED30011980SMESG000060945.1 dd_Smed_v4_14651_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
head regionSMED30011980SMESG000060945.1 dd_Smed_v6_14651_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017
whole organism asexual adult RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. TrEMBL
Match: A0A0R3U400 (G_PROTEIN_RECEP_F1_2 domain-containing protein OS=Mesocestoides corti OX=53468 GN=MCOS_LOCUS1343 PE=4 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 3.597e-74
Identity = 142/332 (42.77%), Postives = 208/332 (62.65%), Query Frame = 1
Query:  190 TNSTVESTPQSVQIIRFLCIPIWAXXXXXXXXXXXXXXKVLRFRHIKSTSTAVYLSALAVVDLLYLICSTNVSLIDYIFFFPSSVRHTSAILCHVVPMLQYSLSHFSAWLVVAVTFDRMILVVLPFSSKKFSNENMAXXXXXXXXXXXXXXXXHFLWTMTFTT------ACNGLYFTKTVFPYVDLALMGIVPFMAMICCNLAIILKLRAQTKIREKNLKKTTKSPLNPGTSNNHDEKPFVKNFKDKAGNLTKMLLCTNLFFMLSMTPLLVYDIVYFLIDAQALLKENEQLWGGLLFGIERLVYTIWYLNFCIHFFVYCLSGPNFRDAAMKI 1167
            TN T   TP  V  IR+ CIP+W+I++  GL GN LT+ VLR + ++ +ST+ YL+ LA+ D+LYL+ S   S+ ++IFFFPS VR  S   C + P L Y+L++ S WL+VAVT +R I VVLPF ++    +  A  V++TI+ +   ++ HF  TM +        +C+  YF   VFP++DL  + ++P   M+  N  I  KLR   K R   +  T+ S  N G S+           ++K+ NLT+ML+ TN+FF++S+TPLL+YD+V+F +D +A  +E+E + GG+LF IERLVYT+WY NF IHF +YCLSGP FR   + I
Sbjct:   28 TNVTTFVTPPLVSGIRYACIPVWSILLFFGLFGNALTVFVLRAKRLQQSSTSFYLTVLAITDVLYLLTSLVASIANFIFFFPSEVRQISNTFCVLTPFLHYTLAYISVWLLVAVTVERAIWVVLPFQARNICTKRTAKFVVVTIVSVFTLLDTHFFVTMRYIEVQPSYWSCSTTYFADKVFPFLDLLFVAVLPCAIMLIANCLIGWKLRVMRKFRS-GVAATSTSNNNQGGSDK----------REKSTNLTRMLVSTNIFFIVSVTPLLIYDVVFFSVDVRAWAEEDEDVRGGMLFAIERLVYTLWYTNFAIHFLLYCLSGPPFRAEVLVI 348          
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. TrEMBL
Match: A0A0R3TQP7 (G_PROTEIN_RECEP_F1_2 domain-containing protein OS=Rodentolepis nana OX=102285 GN=HNAJ_LOCUS9870 PE=4 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 2.634e-71
Identity = 143/349 (40.97%), Postives = 215/349 (61.60%), Query Frame = 1
Query:  163 MNKSVYQNITNSTVESTPQS-------VQIIRFLCIPIWAXXXXXXXXXXXXXXKVLRFRHIKSTSTAVYLSALAVVDLLYLICSTNVSLIDYIFFFPSSVRHTSAILCHVVPMLQYSLSHFSAWLVVAVTFDRMILVVLPFSSKKFSNENMAXXXXXXXXXXXXXXXXHFLWTMTFTTA------CNGLYFTKTVFPYVDLALMGIVPFMAMICCNLAIILKLRAQTKIREKNLKKTTKSPLNPGTSNNHDEKPFVKNFKDKAGNLTKMLLCTNLFFMLSMTPLLVYDIVYFLIDAQALLKENEQLWGGLLFGIERLVYTIWYLNFCIHFFVYCLSGPNFRDAAMKIL 1170
            M+ SV  N++N++ +S+P S       +  IR+  IPIW +++  GL GN LT+ VL+ + +K +ST+ YL+ALA+ D+LYL+ S   S+ ++I+FFP  +R TS   C ++P + Y+L++ S WL+VAVT +R I VVLPF + +      A  V+  ++I+   ++IHF  TM +         C    FT  VFPY+DL L+ ++P   M+  N  I  KLR   K R      +    LN      + EK      K+K+ NLT+ML+ TN+FF++S+TPLL+YD+V+F ID +A  +ENE++ GG++FG+ER VYT+WY NF IHF +YCLSGP FR     +L
Sbjct:    1 MSDSV--NVSNTSTDSSPPSAFDIPLSITAIRYTYIPIWILLLFFGLFGNALTVFVLQAKRLKQSSTSFYLTALAITDMLYLLTSLVTSVANFIYFFPFELRQTSKTFCVLLPFINYTLAYISVWLLVAVTVERAIWVVLPFRAHRICTRRTAKFVVPLLVIVFTILDIHFFITMRYVNISKDKWICKPNSFTDKVFPYLDLLLVAVLPCTIMLIANCLIGWKLRVMLKFRTGT--ASASKTLNSNADPANAEK------KEKSTNLTRMLVSTNVFFIISVTPLLIYDVVFFSIDVKAWAEENEKVRGGIIFGLERFVYTLWYTNFAIHFLLYCLSGPPFRAEVFVLL 339          
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. TrEMBL
Match: A0A0R3SC23 (G_PROTEIN_RECEP_F1_2 domain-containing protein OS=Hymenolepis diminuta OX=6216 GN=HDID_LOCUS2081 PE=4 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 2.900e-71
Identity = 144/346 (41.62%), Postives = 212/346 (61.27%), Query Frame = 1
Query:  163 MNKSVYQNITNSTVESTPQ-------SVQIIRFLCIPIWAXXXXXXXXXXXXXXKVLRFRHIKSTSTAVYLSALAVVDLLYLICSTNVSLIDYIFFFPSSVRHTSAILCHVVPMLQYSLSHFSAWLVVAVTFDRMILVVLPFSSKKFSNENMAXXXXXXXXXXXXXXXXHFLWTMTFTTA------CNGLYFTKTVFPYVDLALMGIVPFMAMICCNLAIILKLRAQTKIREKNLKKTTKSPLNPGTSNNHDEKPFVKNFKDKAGNLTKMLLCTNLFFMLSMTPLLVYDIVYFLIDAQALLKENEQLWGGLLFGIERLVYTIWYLNFCIHFFVYCLSGPNFRDAAM 1161
            M+ SV  N++N +  S P        S+  IR+  IPIW +++  GL GN LT+ VL+ + +K +ST+ YL+ALA+ D+LYL+ S   S+ ++ +FFP  +R TS   C ++P + Y+L++ S WL+VAVT +R I VVLPF + +      A  ++  +LI+   ++IHF  TM +         C    FT  VFPY+DL L+ ++P   M+  N  I  KLR   K R   L  T    LN    + + EK      K+K+ NLT+ML+ TN+FF++S+TPLL+YD+V+F ID +A  +ENE++ GG+LFG+ER VYT+WY NF IHF +YCLSGP FR   +
Sbjct:    1 MSDSV--NVSNISANSPPPGAFEIPLSITAIRYTYIPIWIMLLFFGLFGNALTVFVLQAKRLKQSSTSFYLTALAITDMLYLLTSLVSSIANFTYFFPFELRQTSKTFCVLLPFINYTLAYISVWLLVAVTVERAIWVVLPFRAHRICTRRTAKFIVPLLLIVFTILDIHFFITMRYVQISKDKWICRPNSFTDKVFPYLDLLLVAVLPCTVMLIANCLIGWKLRVMRKFRTGTL--TGSKTLNSNADSTNTEK------KEKSTNLTRMLVSTNVFFIISVTPLLIYDVVFFSIDVKAWAEENEKVRGGILFGLERFVYTLWYTNFAIHFLLYCLSGPPFRAEVL 336          
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. TrEMBL
Match: A0A068Y4I9 (Growth hormone secretagogue receptor type 1 OS=Echinococcus multilocularis OX=6211 GN=EmuJ_000433200 PE=4 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 9.452e-70
Identity = 133/319 (41.69%), Postives = 203/319 (63.64%), Query Frame = 1
Query:  211 TPQSVQIIRFLCIPIWAXXXXXXXXXXXXXXKVLRFRHIKSTSTAVYLSALAVVDLLYLICSTNVSLIDYIFFFPSSVRHTSAILCHVVPMLQYSLSHFSAWLVVAVTFDRMILVVLPFSSKKFSNENMAXXXXXXXXXXXXXXXXHFLWTMTFTTA------CNGLYFTKTVFPYVDLALMGIVPFMAMICCNLAIILKLRAQTKIREKNLKKTTKSPLNPGTSNNHDEKPFVKNFKDKAGNLTKMLLCTNLFFMLSMTPLLVYDIVYFLIDAQALLKENEQLWGGLLFGIERLVYTIWYLNFCIHFFVYCLSGPNFR 1149
            TP  +  IR+ CIP+W+I++  G+ GN LT+ VLR + ++ +ST+ YL+ALA+ D+LYL+ S   S+ ++IFFFPS +R  S   C   P L Y+L++ S WL+V VT +R + VVLPF ++    +  A  V++ ++I    ++IHF  TM +         C   YF+  VFP++DL L+ I+P   M+  N  I  KLR   K R       + + +   ++NN D+    K  ++K+ NLT+ML+ TN+FF++S+TPLL+YD+V+F +D +A  +E E++ GG++F IER VYT+WY NF IHF +YCLSGP FR
Sbjct:   27 TPPLLSGIRYACIPVWSILLCFGIFGNALTVFVLRTKRLQQSSTSFYLTALAITDMLYLLTSLVASIANFIFFFPSELRQLSRTFCVFTPFLSYTLAYISVWLLVTVTVERAVWVVLPFRARHICTKRTAKFVVLLLVIGFTLLDIHFFLTMRYQEVGPGYWLCMTTYFSDKVFPFLDLLLVAILPCAIMLVANCLIGWKLRVMRKFR-------SGTAIGMVSNNNTDQGGGEK--REKSVNLTRMLVSTNVFFIVSVTPLLIYDVVFFSVDVRAWAEEAEEVRGGMIFAIERFVYTLWYTNFAIHFLLYCLSGPPFR 336          
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. TrEMBL
Match: A0A0R3WQM9 (G_PROTEIN_RECEP_F1_2 domain-containing protein OS=Hydatigena taeniaeformis OX=6205 GN=TTAC_LOCUS3054 PE=4 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 1.182e-69
Identity = 133/319 (41.69%), Postives = 200/319 (62.70%), Query Frame = 1
Query:  211 TPQSVQIIRFLCIPIWAXXXXXXXXXXXXXXKVLRFRHIKSTSTAVYLSALAVVDLLYLICSTNVSLIDYIFFFPSSVRHTSAILCHVVPMLQYSLSHFSAWLVVAVTFDRMILVVLPFSSKKFSNENMAXXXXXXXXXXXXXXXXHFLWTMTFTT------ACNGLYFTKTVFPYVDLALMGIVPFMAMICCNLAIILKLRAQTKIREKNLKKTTKSPLNPGTSNNHDEKPFVKNFKDKAGNLTKMLLCTNLFFMLSMTPLLVYDIVYFLIDAQALLKENEQLWGGLLFGIERLVYTIWYLNFCIHFFVYCLSGPNFR 1149
            TP  +  IR+ CIPIW+I++  G+ GN LT+ VLR + ++ +ST+ YL+ALA+ D+LYL+ S   S+ ++IFFFP  +R  S   C   P L Y+L++ S WL+V VT +R + VVLPF ++    +  A  V++ ++     ++IHF  TM +        AC   YF+  VFP++DL L+ ++P   M+  N  I  KLR   K R               ++NN D+    K  ++K+ NLT+ML+ TN+FF++S+TPLL+YD+V+F +D +A  +E E++ GG++F IERLVYT+WY NF IHF +YCLSGP FR
Sbjct:   27 TPPLISGIRYACIPIWSILLCFGIFGNALTVFVLRAKRLQQSSTSFYLTALAITDMLYLLTSLVASIANFIFFFPLELRQLSRTFCVFTPFLSYTLAYISVWLLVTVTVERAVWVVLPFRARHICTKRTAKFVVVLLVFGFTLLDIHFFVTMRYHEVRPKYWACMTTYFSDKVFPFLDLLLVAVLPCTIMLVANCLIGWKLRVMRKFRSGTASGAV-------SNNNTDQGSGDK--REKSINLTRMLVSTNVFFIVSVTPLLIYDVVFFSVDIRAWAEEAEEVRGGMIFAIERLVYTLWYTNFAIHFLLYCLSGPPFR 336          
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Planmine SMEST
Match: SMESG000060945.1 (SMESG000060945.1)

HSP 1 Score: 642.114 bits (1655), Expect = 0.000e+0
Identity = 354/354 (100.00%), Postives = 354/354 (100.00%), Query Frame = 1
Query:  163 MNKSVYQNITNSTVESTPQSVQIIRFLCIPIWAXXXXXXXXXXXXXXKVLRFRHIKSTSTAVYLSALAVVDLLYLICSTNVSLIDYIFFFPSSVRHTSAILCHVVPMLQYSLSHFSAWLVVAVTFDRMILVVLPFSSKKFSNENMAXXXXXXXXXXXXXXXXHFLWTMTFTTACNGLYFTKTVFPYVDLALMGIVPFMAMICCNLAIILKLRAQTKIREKNLKKTTKSPLNPGTSNNHDEKPFVKNFKDKAGNLTKMLLCTNLFFMLSMTPLLVYDIVYFLIDAQALLKENEQLWGGLLFGIERLVYTIWYLNFCIHFFVYCLSGPNFRDAAMKILKLKKSEDHLTNVTKTCVL 1224
            MNKSVYQNITNSTVESTPQSVQIIRFLCIPIWAIIIIVGLVGNILTIKVLRFRHIKSTSTAVYLSALAVVDLLYLICSTNVSLIDYIFFFPSSVRHTSAILCHVVPMLQYSLSHFSAWLVVAVTFDRMILVVLPFSSKKFSNENMALIVIITILIIIISVNIHFLWTMTFTTACNGLYFTKTVFPYVDLALMGIVPFMAMICCNLAIILKLRAQTKIREKNLKKTTKSPLNPGTSNNHDEKPFVKNFKDKAGNLTKMLLCTNLFFMLSMTPLLVYDIVYFLIDAQALLKENEQLWGGLLFGIERLVYTIWYLNFCIHFFVYCLSGPNFRDAAMKILKLKKSEDHLTNVTKTCVL
Sbjct:    1 MNKSVYQNITNSTVESTPQSVQIIRFLCIPIWAIIIIVGLVGNILTIKVLRFRHIKSTSTAVYLSALAVVDLLYLICSTNVSLIDYIFFFPSSVRHTSAILCHVVPMLQYSLSHFSAWLVVAVTFDRMILVVLPFSSKKFSNENMALIVIITILIIIISVNIHFLWTMTFTTACNGLYFTKTVFPYVDLALMGIVPFMAMICCNLAIILKLRAQTKIREKNLKKTTKSPLNPGTSNNHDEKPFVKNFKDKAGNLTKMLLCTNLFFMLSMTPLLVYDIVYFLIDAQALLKENEQLWGGLLFGIERLVYTIWYLNFCIHFFVYCLSGPNFRDAAMKILKLKKSEDHLTNVTKTCVL 354          
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Planmine SMEST
Match: SMESG000037421.1 (SMESG000037421.1)

HSP 1 Score: 230.335 bits (586), Expect = 3.777e-70
Identity = 146/365 (40.00%), Postives = 216/365 (59.18%), Query Frame = 1
Query:  193 NSTVESTPQSVQIIRFLCIPIWAXXXXXXXXXXXXXXKVLRFRHIKSTSTAVYLSALAVVDLLYLICSTNVSLIDYIFFFPSSVRHTSAILCHVVPMLQYSLSHFSAWLVVAVTFDRMILVVLPFSSKKFSNENMAXXXXXXXXXXXXXXXXHFLWTMTFT--------TACNGLYFTKTVFPYVDLALMGIVPFMAMICCNLAIILKLRAQTKIREK-NLKKTTKSPLNPG------------------------TSNNHDEKPFVKNFKDKAG----------NLTKMLLCTNLFFMLSMTPLLVYDIVYFLIDAQALLKENEQLWGGLLFGIERLVYTIWYLNFCIHFFVYCLSGPNFRDAA 1158
            NST    P SV+IIR +CI +WA II+VG+ GNILT+ VL    + +TST  YL+ LA+VDLLYLI S    ++D+   FP+++R ++ + C ++ ++ Y+L++ S WL+VAV+ DRMI V+LPF +K      +A I++    I  I ++IHF+WT+ F            + + F K +FPYVDL L+ I+PF+ M+  N+ I+LK++  + +R+  +   T   P   G                        +S N  E   VK FK +            +LT+MLL  NLFFM S  PLL+YD++Y+LID + ++++     GG++FG+ERLVYT WYLNF IHF +YCLSGP FR+ A
Sbjct:    9 NSTFPVMPDSVEIIRRICIAVWANIILVGVFGNILTVIVLAGPKLNTTSTTFYLTILAIVDLLYLIFSLGGQMVDFALLFPNTMRQSNELSCKLLNIILYTLAYISVWLLVAVSIDRMIWVLLPFKAKLICTRKVAKIIVSIFCIFFIGIDIHFIWTVKFVKHQTKNNCEVIDNILF-KYIFPYVDLTLIMILPFVIMLISNILIVLKIQKVSVLRQTLHRSSTIPEPNQVGILKVKMNSISSPSRFQDDTNQISISSRNRSESQ-VKFFKRRQSKYSLKDKQTTSLTRMLLSVNLFFMASTAPLLIYDVIYYLIDFKEMIQKYGIYIGGVIFGVERLVYTFWYLNFSIHFLLYCLSGPKFREEA 371          
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Planmine SMEST
Match: SMESG000000903.1 (SMESG000000903.1)

HSP 1 Score: 217.624 bits (553), Expect = 8.691e-66
Identity = 132/357 (36.97%), Postives = 214/357 (59.94%), Query Frame = 1
Query:  202 VESTPQSVQIIRFLCIPIWAXXXXXXXXXXXXXXKVLRFRHIKSTSTAVYLSALAVVDLLYLICSTNVSLIDYIFFFPSSVRHTSAILCHVVPMLQYSLSHFSAWLVVAVTFDRMILVVLPFSSKKFSNENMAXXXXXXXXXXXXXXXXHFLWTMTF-------TTAC--NGLYFTKTVFPYVDLALMGIVPFMAMICCNLAIILKLRAQTKIREK--------------NLKKTTK--------SPLNPGTSNNHDEKPFVKNFKD-KAGNLTKMLLCTNLFFMLSMTPLLVYDIVYFLIDAQALLKENEQLWGGLLFGIERLVYTIWYLNFCIHFFVYCLSGPNFRDAAMKILKL 1176
            +E  P++V++IR +CI +W  II+ G+VGNI+T+ VL++ ++ + ST++YL ALA+ D+++LI S    LID++FFFP  +R   ++ CH+V +  +++++ S WL+V VT DRM  V+ PF S+KF     A   I  + ++ + +N HF+W+++         T C  + + F K +FP  DL  + I+P + M+  N+ II K++    IREK              NL    K          L P  S +  +       +D K  +LTKML+  N+FF++S  PLL+YD+ Y+ ID   L+K + +L+G L+FG+E+LVYT+WYL+F +HF +YC+SGP FR  A+ ++ L
Sbjct:    1 MEVIPETVKVIRNICIVVWTFIIVFGVVGNIMTVLVLQYPNMNTMSTSIYLKALAIADMIFLIFSVGGQLIDFMFFFPMQLRQKHSVFCHIVNLFGFTVTYISVWLLVFVTLDRMFWVIFPFKSRKFCTIQTAKSTIAGVCLVCVMINTHFMWSVSSLISVHSNKTICEWSDVRF-KLIFPIFDLIFVNILPSLTMLIANVMIIAKVKHMKNIREKMKTHQHIIKENVISNLSLENKMNSNLLKPPELVPMNSLSIQKASTSDKRRDRKTSSLTKMLMTINIFFIISTLPLLIYDLAYWFIDMNLLIKTDGKLYGPLIFGLEKLVYTLWYLHFSMHFLLYCMSGPKFRWQALYMVGL 356          
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Planmine SMEST
Match: SMESG000002498.1 (SMESG000002498.1)

HSP 1 Score: 209.92 bits (533), Expect = 2.307e-62
Identity = 132/349 (37.82%), Postives = 212/349 (60.74%), Query Frame = 1
Query:  214 PQSVQIIRFLCIPIWAXXXXXXXXXXXXXXKVLRFRHIKSTSTAVYLSALAVVDLLYLICSTNVSLIDYIFFFPSSVRHTSAILCHVVPMLQYSLSHFSAWLVVAVTFDRMILVVLPFSSKKFSNENMAXXXXXXXXXXXXXXXXHFLWTMTFT------TACNGLYFTKTVFPYVDLALMGIVPFMAMICCNLAIILKLRAQTKIREKNLKKTTKSP-------LNP---------GTSNNHDE-------KPFVKNFKDK-AGNLTKMLLCTNLFFMLSMTPLLVYDIVYFLIDAQALLKENEQLWGGLLFGIERLVYTIWYLNFCIHFFVYCLSGPNFRDAAMKIL 1170
            P ++ IIR +CI +WAII++ GL GN LT+ VL    + ++ST  YL+ LA++D+LYLI S    ++++  FFP+++R  +   C  + M++++L++ S WL+VAV  DRMI V+ PF +K      +A I++I+++ +++ +++HF WT+ FT       +C      +  F Y+DL L+  +PF  M   N  II KLR   K+R K +K T + P       LN            +NN +E       +   +  +DK   +LTKMLL  N+FF++S TPLL Y+I++++   ++LL + E    GL+FGIER++YT+WYLNF +HF +YC+SGP FR  A+++L
Sbjct:   16 PPAIDIIRNICIGVWAIIVLFGLFGNCLTVAVLISPKLNNSSTTFYLTVLALIDILYLIFSLGGQMLNFSIFFPAALRQKNMFACISLSMIRFTLTYISVWLLVAVAIDRMIWVIFPFKAKMICTRKIAKIIVISLIAMLVLIDLHFYWTLKFTYNKGSVNSCELKESYRNPFLYIDLTLVMGLPFFVMSVANSLIISKLREMEKLR-KGMKSTNRIPNDSVIPNLNATSKFSNRKHAKNNNVEEITCEIVKRSTRRRSRDKQTTSLTKMLLSVNIFFLVSTTPLLSYNILFYVPHIKSLLLQFENQLTGLIFGIERIIYTLWYLNFAVHFLLYCMSGPKFRQEAIRLL 363          
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Planmine SMEST
Match: SMESG000047150.1 (SMESG000047150.1)

HSP 1 Score: 189.504 bits (480), Expect = 1.290e-55
Identity = 129/341 (37.83%), Postives = 197/341 (57.77%), Query Frame = 1
Query:  193 NSTVESTPQSVQIIRFLCIPIWAXXXXXXXXXXXXXXKVLRFRHIKSTSTAVYLSALAVVDLLYLICSTNVSLIDYIFFFPSSVRHTSAILCHVVPMLQYSLSHFSAWLVVAVTFDRMILVVLPFSSKKFSNENMAXXXXXXXXXXXXXXXXHFLWTMTFT--------TACNGLYFTKTVFPYVDLALMGIVPFMAMICCNLAIILKLRAQTKIREK-NLKKTTKSPLNPG------------------------TSNNHDEKPFVKNFKDKAG----------NLTKMLLCTNLFFMLSMTPLLVYDIVYFLIDAQALLKENEQLWGGLLFGIERLVYT 1086
            NST    P SV+IIR +CI +WA II+VG+ GNILT+ VL    + +TST  YL+ LA+VDLLYLI S    ++D+   FP+++R ++ + C ++ ++ Y+L++ S WL+VAV+ DRMI V+LPF +K      +A I++    I  I ++IHF+WT+ F            + + F K +FPYVDL L+ I+PF+ M+  N+ I+LK++  + +R+  +   T   P   G                        +S N  E   VK FK +            +LT+MLL  NLFFM S  PLL+YD++Y+LID + ++++     GG++FG+ERLVYT
Sbjct:    9 NSTFPVMPDSVEIIRRICIAVWANIILVGVFGNILTVIVLAGPKLNTTSTTFYLTILAIVDLLYLIFSLGGQMVDFALLFPNTMRQSNELSCKLLNIILYTLAYISVWLLVAVSIDRMIWVLLPFKAKLICTRKVAKIIVSIFCIFFIGIDIHFIWTVKFVKHQTKNNCEVIDNILF-KYIFPYVDLTLIMILPFVIMLISNILIVLKIQKVSVLRQTLHRSSTIPEPNQVGILKVKMNSISSPSRFQDDTNQISISSRNRSESQ-VKFFKRRQSKYSLKDKQTTSLTRMLLSVNLFFMASTAPLLIYDVIYYLIDFKEMIQKYGIYIGGVIFGVERLVYT 347          
The following BLAST results are available for this feature:
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0R3U4003.597e-7442.77G_PROTEIN_RECEP_F1_2 domain-containing protein OS=... [more]
A0A0R3TQP72.634e-7140.97G_PROTEIN_RECEP_F1_2 domain-containing protein OS=... [more]
A0A0R3SC232.900e-7141.62G_PROTEIN_RECEP_F1_2 domain-containing protein OS=... [more]
A0A068Y4I99.452e-7041.69Growth hormone secretagogue receptor type 1 OS=Ech... [more]
A0A0R3WQM91.182e-6941.69G_PROTEIN_RECEP_F1_2 domain-containing protein OS=... [more]
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BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000060945.10.000e+0100.00SMESG000060945.1[more]
SMESG000037421.13.777e-7040.00SMESG000037421.1[more]
SMESG000000903.18.691e-6636.97SMESG000000903.1[more]
SMESG000002498.12.307e-6237.82SMESG000002498.1[more]
SMESG000047150.11.290e-5537.83SMESG000047150.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30011980 ID=SMED30011980|Name=G_PROTEIN_RECEP_F1_2 domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=1449bp
GAATCTTCTTGTCTTTTGGACCAATGAAAATCATTATATTGGGCAATTAT
ATTATCTGTTGGAAATATTTGTAATTGCATTAGTATTCATCTTTTGGAAA
ACAGAAACAAAGAAAGAAATCTGTTCCTGATATCGAAGAAAATCCAAAAT
CCAAATAATCAAATGAATAAATCTGTTTATCAAAATATCACAAATAGTAC
AGTTGAATCTACTCCTCAGTCTGTTCAGATTATTAGATTTTTGTGTATTC
CTATTTGGGCAATTATTATTATCGTTGGACTGGTTGGTAATATCCTTACG
ATAAAGGTTCTGAGATTTCGCCACATAAAATCCACAAGTACCGCGGTCTA
TTTGAGTGCTCTTGCAGTCGTTGATCTTCTCTATTTGATCTGTAGCACAA
ATGTCAGTTTGATAGATTATATTTTCTTTTTCCCCAGCAGTGTCAGACAT
ACCTCGGCGATTCTTTGCCATGTGGTACCCATGTTGCAGTACAGTCTAAG
TCATTTCAGCGCATGGTTAGTTGTAGCTGTGACATTTGATAGAATGATTC
TAGTCGTTCTCCCTTTTTCTTCAAAGAAGTTTTCAAATGAAAATATGGCT
TTAATTGTCATTATAACGATATTAATAATTATCATATCGGTTAATATTCA
TTTCCTCTGGACAATGACCTTCACTACGGCATGCAACGGTCTTTATTTCA
CGAAAACTGTATTTCCATACGTAGATTTAGCCTTAATGGGAATTGTACCT
TTTATGGCTATGATTTGTTGCAATCTTGCTATTATTCTTAAATTGAGAGC
GCAGACTAAAATTCGAGAAAAGAACTTAAAGAAAACAACAAAATCTCCTC
TAAATCCCGGCACGTCAAATAATCATGATGAGAAGCCGTTTGTGAAAAAT
TTCAAAGACAAAGCCGGAAATCTCACAAAAATGCTTTTGTGTACAAATTT
ATTTTTCATGCTTTCAATGACCCCTCTGTTGGTATATGACATCGTTTATT
TTTTGATTGACGCACAAGCTTTGTTGAAGGAAAATGAACAATTATGGGGA
GGGCTATTATTTGGTATTGAAAGACTAGTATATACTATTTGGTACTTAAA
CTTTTGCATTCATTTCTTTGTGTACTGTCTTAGTGGACCGAATTTCAGAG
ATGCAGCCATGAAAATTCTCAAACTCAAAAAGTCAGAAGATCACTTGACA
AATGTAACAAAAACCTGTGTACTTTAAACGAGAAACTTTTGGGAAACCTC
CAATTGGATTCATGATGATTAAAAGAAATCCACTTTTTGCAAGATTTTAT
CGTTTGCGGAATTCATTGCTAAAAATCTAATCTTTTTTCTTTGGGAGATG
ATTATTTCTTTTTAAAAGTTTACATGTAATGAGTTATGTTGTCAAAACAT
GTCAATTATACATATTTCTATATACAATTTATTTTGATTAATATATTTA
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protein sequence of SMED30011980-orf-1

>SMED30011980-orf-1 ID=SMED30011980-orf-1|Name=SMED30011980-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=355bp
MNKSVYQNITNSTVESTPQSVQIIRFLCIPIWAIIIIVGLVGNILTIKVL
RFRHIKSTSTAVYLSALAVVDLLYLICSTNVSLIDYIFFFPSSVRHTSAI
LCHVVPMLQYSLSHFSAWLVVAVTFDRMILVVLPFSSKKFSNENMALIVI
ITILIIIISVNIHFLWTMTFTTACNGLYFTKTVFPYVDLALMGIVPFMAM
ICCNLAIILKLRAQTKIREKNLKKTTKSPLNPGTSNNHDEKPFVKNFKDK
AGNLTKMLLCTNLFFMLSMTPLLVYDIVYFLIDAQALLKENEQLWGGLLF
GIERLVYTIWYLNFCIHFFVYCLSGPNFRDAAMKILKLKKSEDHLTNVTK
TCVL*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: cellular component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000099neuron
PLANA:0000101muscle cell
PLANA:0000418head
PLANA:0002056medial muscle cell
PLANA:0003001lateral region of the whole animal
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: molecular function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: biological process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000276G protein-coupled receptor, rhodopsin-likePRINTSPR00237GPCRRHODOPSNcoord: 60..81
score: 28.42
coord: 254..278
score: 19.52
coord: 109..131
score: 19.83
coord: 27..51
score: 25.41
coord: 303..329
score: 20.61
IPR000276G protein-coupled receptor, rhodopsin-likePFAMPF000017tm_1coord: 42..281
e-value: 1.5E-17
score: 63.8
NoneNo IPR availableGENE3DG3DSA:1.20.1070.10coord: 11..346
e-value: 1.2E-44
score: 154.5
NoneNo IPR availablePANTHERPTHR46641FAMILY NOT NAMEDcoord: 11..351
NoneNo IPR availablePANTHERPTHR46641:SF12CNMAMIDE RECEPTORcoord: 11..351
NoneNo IPR availableCDDcd149787tmA_FMRFamide_R-likecoord: 38..332
e-value: 6.00973E-25
score: 100.785
NoneNo IPR availableSUPERFAMILYSSF81321Family A G protein-coupled receptor-likecoord: 17..341
NoneNo IPR availableTMHMMTMhelixcoord: 258..280
NoneNo IPR availableTMHMMTMhelixcoord: 186..208
NoneNo IPR availableTMHMMTMhelixcoord: 306..328
NoneNo IPR availableTMHMMTMhelixcoord: 115..137
NoneNo IPR availableTMHMMTMhelixcoord: 23..45
NoneNo IPR availableTMHMMTMhelixcoord: 144..166
NoneNo IPR availableTMHMMTMhelixcoord: 62..84
IPR017452GPCR, rhodopsin-like, 7TMPROSITEPS50262G_PROTEIN_RECEP_F1_2coord: 42..321
score: 22.899