SMED30011901

Overview
NameSMED30011901
Smed IDSMED30011901
Length (bp)1516
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30011901 (SMED30011901) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30011901 (SMED30011901) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30011901 (SMED30011901) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30011901 (SMED30011901) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30011901

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 1

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30011901SMESG000007190.1 SmedASXL_002667SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30011901 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.000697:3047..4562 -7580
Homology
[Close]
BLAST of SMED30011901 vs. Ensembl Human
Match: CYHR1 (cysteine and histidine rich 1 [Source:HGNC Symbol;Acc:HGNC:17806])

HSP 1 Score: 52.373 bits (124), Expect = 1.373e-6
Identity = 41/167 (24.55%), Postives = 62/167 (37.13%), Query Frame = 2 
Query:  254 KFTNKIKSYFECSKC-KMTDKFFKQCCYGHIFCYNC---------IKNNGIYCDECDKMIDSNELSLCT---IPSNAHSFIKSICQFCNNQYYQDNLMTHQNEQCTRRITNCDFHIFGCLWLETVDKKRLHLQSCPFQNLKLKQSLELYQNFINKQKVIISNENAIF 715
            K   ++ S   C+ C  +      QC  GH+ C  C         +K     C  C   I     SLC        A S + S C FC  Q+ +  L  HQ E+C  R+T C +   GC W     +  +H  +C        + +E+        +  +   N+IF
Sbjct:  100 KLEERLYSVLCCTVCLDLPKASVYQCTNGHLMCAGCFIHLLADARLKEEQATCPNCRCEISK---SLCCRNLAVEKAVSELPSECGFCLRQFPRSLLERHQKEECQDRVTQCKYKRIGCPWHGPFHELTVHEAACAHPTKTGSELMEILDGMDQSHRKEMQLYNSIF 263
[Close]
BLAST of SMED30011901 vs. Ensembl Human
Match: CYHR1 (cysteine and histidine rich 1 [Source:HGNC Symbol;Acc:HGNC:17806])

HSP 1 Score: 50.447 bits (119), Expect = 4.625e-6
Identity = 37/145 (25.52%), Postives = 54/145 (37.24%), Query Frame = 2 
Query:  317 FKQCCYGHIFCYNC---------IKNNGIYCDECDKMIDSNELSLC---TIPSNAHSFIKSICQFCNNQYYQDNLMTHQNEQCTRRITNCDFHIFGCLWLETVDKKRLHLQSCPFQNLKLKQSLELYQNFINKQKVIISNENAIF 715
            F  C  GH+ C  C         +K     C  C   I     SLC        A S + S C FC  Q+ +  L  HQ E+C  R+T C +   GC W     +  +H  +C        + +E+        +  +   N+IF
Sbjct:   80 FHWCTNGHLMCAGCFIHLLADARLKEEQATCPNCRCEISK---SLCCRNLAVEKAVSELPSECGFCLRQFPRSLLERHQKEECQDRVTQCKYKRIGCPWHGPFHELTVHEAACAHPTKTGSELMEILDGMDQSHRKEMQLYNSIF 221
[Close]
BLAST of SMED30011901 vs. Ensembl Human
Match: CYHR1 (cysteine and histidine rich 1 [Source:HGNC Symbol;Acc:HGNC:17806])

HSP 1 Score: 49.2914 bits (116), Expect = 5.918e-6
Identity = 36/143 (25.17%), Postives = 54/143 (37.76%), Query Frame = 2 
Query:  323 QCCYGHIFCYNC---------IKNNGIYCDECDKMIDSNELSLCT---IPSNAHSFIKSICQFCNNQYYQDNLMTHQNEQCTRRITNCDFHIFGCLWLETVDKKRLHLQSCPFQNLKLKQSLELYQNFINKQKVIISNENAIF 715
            +C  GH+ C  C         +K     C  C   I     SLC        A S + S C FC  Q+ +  L  HQ E+C  R+T C +   GC W     +  +H  +C        + +E+        +  +   N+IF
Sbjct:   31 ECTNGHLMCAGCFIHLLADARLKEEQATCPNCRCEISK---SLCCRNLAVEKAVSELPSECGFCLRQFPRSLLERHQKEECQDRVTQCKYKRIGCPWHGPFHELTVHEAACAHPTKTGSELMEILDGMDQSHRKEMQLYNSIF 170
[Close]
BLAST of SMED30011901 vs. Ensembl Fly
Match: CG32486 (gene:FBgn0266918 transcript:FBtr0073004)

HSP 1 Score: 61.2326 bits (147), Expect = 8.404e-10
Identity = 49/187 (26.20%), Postives = 82/187 (43.85%), Query Frame = 2 
Query:  251 EKFTNKIKSYFECSKC-KMTDKFFKQCCYGHIFCYNC---------IKNNGIYCDECDKMIDSNELSLCTIPSNAHSFIKSICQFCNNQYYQDNLMTHQNEQCTRRITNCDFHIFGCLWL----ETVDKKR--LHLQSCPFQNLKLKQSLELYQNFINKQKVIISNENAIFLDCLSKIKQLNNGLRL 763
            EK  ++I +   C+ C  +      QC  GH+ C  C         +++    C  C   I  +  S       A S + S CQFCN ++   +L  H+  +C  R T C +H  GC W     ET + +R  LH Q   ++ +    +LE + + I ++K + +      +D LS  K + N L++
Sbjct:  101 EKLAHRISNALCCAVCLDLPKTAMYQCQMGHLMCAACFTHLLADGRLRDQIATCPNCRVEISKSTASRNLAVEKAASELPSECQFCNKEFPYKSLERHEQHECQERPTKCKYHRIGCQWRGPYHETNEHERNCLHPQKSGYEVMA---ALEAHDDRIKEEKKMFNT----LIDLLSYEKIIFNDLQM 280
[Close]
BLAST of SMED30011901 vs. Ensembl Zebrafish
Match: cyhr1 (cysteine/histidine-rich 1 [Source:NCBI gene;Acc:767773])

HSP 1 Score: 52.373 bits (124), Expect = 6.939e-7
Identity = 36/144 (25.00%), Postives = 54/144 (37.50%), Query Frame = 2 
Query:  227 LNMSKNDIEKFTNKIKSYFECSKC-KMTDKFFKQCCYGHIFCYNC---------IKNNGIYCDECDKMIDSNELSLCT---IPSNAHSFIKSICQFCNNQYYQDNLMTHQNEQCTRRITNCDFHIFGCLWLETVDKKRLHLQSC 619
            + + + +  K   ++ S   C+ C  +      QC  GH+ C  C         +K     C  C   I     SLC        A S + S C +C  Q+ +  L  HQ E+C  R+T C +   GC W     +   H   C
Sbjct:   69 VRLQEGEAGKLEERLYSVLCCTVCLDLPKASVYQCTNGHLMCAGCFIHLLADSRLKEEQATCPNCRCEISK---SLCCRNLAVEKAVSELPSECSYCLKQFPRSGLDRHQTEECQDRVTQCKYKRIGCPWQGPFHELSAHEAEC 209
[Close]
BLAST of SMED30011901 vs. Ensembl Mouse
Match: Cyhr1 (cysteine and histidine rich 1 [Source:MGI Symbol;Acc:MGI:1859320])

HSP 1 Score: 50.0618 bits (118), Expect = 3.071e-6
Identity = 37/143 (25.87%), Postives = 54/143 (37.76%), Query Frame = 2 
Query:  323 QCCYGHIFCYNC---------IKNNGIYCDECDKMIDSNELSLC---TIPSNAHSFIKSICQFCNNQYYQDNLMTHQNEQCTRRITNCDFHIFGCLWLETVDKKRLHLQSCPFQNLKLKQSLELYQNFINKQKVIISNENAIF 715
            QC  GH+ C  C         +K     C  C   I     SLC        A S + S C FC  Q+ +  L  HQ E+C  R+T C +   GC W     +  +H  +C        + +E+        +  +   N+IF
Sbjct:   31 QCTNGHLMCAGCFIHLLADARLKEEQATCPNCRCEISK---SLCCRNLAVEKAVSELPSECGFCLRQFPRSLLERHQKEECQDRVTQCKYKRIGCPWHGPFHELTVHEAACAHPTKTGNELMEILDEMDQSHRKEMQLYNSIF 170
[Close]
BLAST of SMED30011901 vs. Ensembl Mouse
Match: Cyhr1 (cysteine and histidine rich 1 [Source:MGI Symbol;Acc:MGI:1859320])

HSP 1 Score: 49.6766 bits (117), Expect = 3.440e-6
Identity = 41/167 (24.55%), Postives = 62/167 (37.13%), Query Frame = 2 
Query:  254 KFTNKIKSYFECSKC-KMTDKFFKQCCYGHIFCYNC---------IKNNGIYCDECDKMIDSNELSLCT---IPSNAHSFIKSICQFCNNQYYQDNLMTHQNEQCTRRITNCDFHIFGCLWLETVDKKRLHLQSCPFQNLKLKQSLELYQNFINKQKVIISNENAIF 715
            K   ++ S   C+ C  +      QC  GH+ C  C         +K     C  C   I     SLC        A S + S C FC  Q+ +  L  HQ E+C  R+T C +   GC W     +  +H  +C        + +E+        +  +   N+IF
Sbjct:   95 KLEERLYSVLCCTVCLDLPKASVYQCTNGHLMCAGCFIHLLADARLKEEQATCPNCRCEISK---SLCCRNLAVEKAVSELPSECGFCLRQFPRSLLERHQKEECQDRVTQCKYKRIGCPWHGPFHELTVHEAACAHPTKTGNELMEILDEMDQSHRKEMQLYNSIF 258
[Close]
BLAST of SMED30011901 vs. Ensembl Mouse
Match: Cyhr1 (cysteine and histidine rich 1 [Source:MGI Symbol;Acc:MGI:1859320])

HSP 1 Score: 49.2914 bits (116), Expect = 8.904e-6
Identity = 37/135 (27.41%), Postives = 52/135 (38.52%), Query Frame = 2 
Query:  254 KFTNKIKSYFECSKC-KMTDKFFKQCCYGHIFCYNC---------IKNNGIYCDECDKMIDSNELSLCT---IPSNAHSFIKSICQFCNNQYYQDNLMTHQNEQCTRRITNCDFHIFGCLWLETVDKKRLHLQSC 619
            K   ++ S   C+ C  +      QC  GH+ C  C         +K     C  C   I     SLC        A S + S C FC  Q+ +  L  HQ E+C  R+T C +   GC W     +  +H  +C
Sbjct:   95 KLEERLYSVLCCTVCLDLPKASVYQCTNGHLMCAGCFIHLLADARLKEEQATCPNCRCEISK---SLCCRNLAVEKAVSELPSECGFCLRQFPRSLLERHQKEECQDRVTQCKYKRIGCPWHGPFHELTVHEAAC 226
[Close]
BLAST of SMED30011901 vs. UniProt/SwissProt
Match: sp|Q9VZV5|CYHR1_DROME (Cysteine and histidine-rich protein 1 homolog OS=Drosophila melanogaster OX=7227 GN=CG32486 PE=2 SV=2)

HSP 1 Score: 61.2326 bits (147), Expect = 8.425e-9
Identity = 49/187 (26.20%), Postives = 82/187 (43.85%), Query Frame = 2 
Query:  251 EKFTNKIKSYFECSKC-KMTDKFFKQCCYGHIFCYNC---------IKNNGIYCDECDKMIDSNELSLCTIPSNAHSFIKSICQFCNNQYYQDNLMTHQNEQCTRRITNCDFHIFGCLWL----ETVDKKR--LHLQSCPFQNLKLKQSLELYQNFINKQKVIISNENAIFLDCLSKIKQLNNGLRL 763
            EK  ++I +   C+ C  +      QC  GH+ C  C         +++    C  C   I  +  S       A S + S CQFCN ++   +L  H+  +C  R T C +H  GC W     ET + +R  LH Q   ++ +    +LE + + I ++K + +      +D LS  K + N L++
Sbjct:  101 EKLAHRISNALCCAVCLDLPKTAMYQCQMGHLMCAACFTHLLADGRLRDQIATCPNCRVEISKSTASRNLAVEKAASELPSECQFCNKEFPYKSLERHEQHECQERPTKCKYHRIGCQWRGPYHETNEHERNCLHPQKSGYEVMA---ALEAHDDRIKEEKKMFNT----LIDLLSYEKIIFNDLQM 280
[Close]
BLAST of SMED30011901 vs. UniProt/SwissProt
Match: sp|Q08CH8|CYHR1_DANRE (Cysteine and histidine-rich protein 1 OS=Danio rerio OX=7955 GN=cyhr1 PE=2 SV=1)

HSP 1 Score: 52.373 bits (124), Expect = 5.322e-6
Identity = 36/144 (25.00%), Postives = 54/144 (37.50%), Query Frame = 2 
Query:  227 LNMSKNDIEKFTNKIKSYFECSKC-KMTDKFFKQCCYGHIFCYNC---------IKNNGIYCDECDKMIDSNELSLCT---IPSNAHSFIKSICQFCNNQYYQDNLMTHQNEQCTRRITNCDFHIFGCLWLETVDKKRLHLQSC 619
            + + + +  K   ++ S   C+ C  +      QC  GH+ C  C         +K     C  C   I     SLC        A S + S C +C  Q+ +  L  HQ E+C  R+T C +   GC W     +   H   C
Sbjct:   62 VRLQEGEAGKLEERLYSVLCCTVCLDLPKASVYQCTNGHLMCAGCFIHLLADSRLKEEQATCPNCRCEISK---SLCCRNLAVEKAVSELPSECSYCLKQFPRSGLDRHQTEECQDRVTQCKYKRIGCPWQGPFHELSAHEAEC 202
[Close]
BLAST of SMED30011901 vs. TrEMBL
Match: A0A183AWV3 (Uncharacterized protein OS=Echinostoma caproni OX=27848 GN=ECPE_LOCUS11438 PE=4 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.175e-10
Identity = 68/303 (22.44%), Postives = 125/303 (41.25%), Query Frame = 2 
Query:  269 IKSYFECSKCKMTDKFFKQCCYGHIFCYNCI-------KNNGIYCDECDKMIDSNELSLCTIPSNAHSFIKSICQFCNNQYYQDNLMTHQNEQCTRRITNCDFHIFGCLWLETVDKKRLHLQSCPFQNLKLKQSLELYQNFINKQKVIISNENAIFLDCLSKIKQLNNGLRLAIKEVILTKSQLSFVSNTIYCIKFA--SSTFYLPFSCCVSHGFNFELYLVIDKSRNTKK--IRYIIKSDNEYLLKLYY--CLISFSLIEDEENFPFSDMFHWHEFERNNEESAANEIKIKYDKNDENIDKL 1138
            ++S   C+ C    K   QC  GH+ C +C+        N+   C  C   +    L  C +     S + S C+FC  +  +  +  H+   C  R   C F + GC W    ++   H + CP+++  + +   L    +++ ++  S  N      L+++ + + GL+   +++ +++     V  T  C   A   ST  L F CC   G      + +D + + K+  + Y IKS  E   ++ +  CL+    +E    F  +D      F  N +ES     K+ Y +  E  D +
Sbjct:   92 VRSLITCAICLDIPKQAYQCSNGHLICIHCVTRLLQQHSNSNAVCPSCRIPLHFG-LRRCLLAEQLASELPSDCRFCGLRMVRKQIEQHETTLCPVRPVTCRFSVIGCQWFGKWNQLEGHFKHCPYKDKPISEIEPLLVTALHQNQIWTSERNQFPRGLLAQLAKSSGGLKAFRRQIAVSRE----VPGTESCEGRAIYQSTSNL-FRCC---GLK---RITVDVTVDHKQGDLHYCIKSKWEQTSEISFRLCLVHCGDVE----FDVNDQLRTFRFSSNQKESPTYSTKLMYHRTLELSDPM 378
[Close]
BLAST of SMED30011901 vs. TrEMBL
Match: D6WMC9 (Cysteine and histidine-rich protein 1 homolog-like Protein OS=Tribolium castaneum OX=7070 GN=TcasGA2_TC014541 PE=4 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.449e-8
Identity = 41/139 (29.50%), Postives = 70/139 (50.36%), Query Frame = 2 
Query:  323 QCCYGHIFCYNC---------IKNNGIYCDECD----KMIDSNELSLCTIPSNAHSFIKSICQFCNNQYYQDNLMTHQNEQCTRRITNCDFHIFGCLWLETVDKKRLHLQSC--PFQ-NLKLKQSLE-LYQNFINKQKV 688
            QC  GH+ C  C         +++    C  C     K + +  L++     NA S + S CQFCN Q+ +++L  H++E+C  RI+ C +H  GC W   V ++  H + C  P +   ++ ++LE L Q  I ++K+
Sbjct:   68 QCSNGHLMCAGCFTHILADARLRDETSTCPTCRVEICKTLATRNLAV----ENAVSELPSECQFCNKQFPRNSLEKHEDEECEDRISGCKYHRIGCPWRGPVHERAQHEKECGHPHKSGAEVMEALEILDQQLIEERKL 202
[Close]
BLAST of SMED30011901 vs. TrEMBL
Match: A0A4E0QZJ7 (Uncharacterized protein OS=Fasciola hepatica OX=6192 GN=D915_008685 PE=4 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.855e-8
Identity = 62/316 (19.62%), Postives = 124/316 (39.24%), Query Frame = 2 
Query:  200 NINYIEVTILNMSKNDIEKFTNKIKSYFECSKCKMTDKFFKQCCYGHIFCYNCI-------KNNGIYCDECDKMIDSNELSLCTIPSNAHSFIKSICQFCNNQYYQDNLMTHQNEQCTRRITNCDFHIFGCLWLETVDKKRLHLQSCPFQNLKLKQSLELYQNFINKQKVIISNENAIFLDCLSKIKQLNNGLRLAIKEVILTKSQLSFVSNTIYCIKFASSTFYLPFSCCVSHGFNFELYLVIDKSRNTKKIRYIIKSDNEYLLKLYYCLISFSLIEDEENFPFSDMFHWHEFERNNEESAANEIKIKYDKNDEN 1126
            N +  E++  N  + + +     ++S   C+ C    +   QC  GH+ C +C          +   C  C   +    L  C +     + + S C+FC ++  +     H+   C  R   C F + GC W    ++   H   C ++  +L +   +    +++ ++  +  N      L+++ +   GL+   K V +++   S  S        ++S     F CC       E+ +   +     ++RY +KS +E   ++ +CL      + E  F  +D  H   F  N +ES     K+ Y +  E+
Sbjct:   69 NSSESEISQNNQHEREEQALQEIVRSLLTCAVCLDVPRQAFQCSNGHLICIHCATRLLQQHSPSDAVCPSCRTPLQFG-LRRCLLAEQLAAELPSNCRFCGSKMVRKLTELHETTICPSRPVTCRFSVVGCPWSGKWNQLESHTVHCAYKEKRLHEVESVLVAALDQNQIWQAERNQFSRGLLTRLAKSPGGLKAFRKPVGVSRETQSPESEEGIATYQSTSNL---FRCCGLKRVTLEVTINYIQG----ELRYRVKSKSEQASEILFCLCLVRCGDAE--FDVNDQLHSFRFSPNQKESPDYLTKLIYHRTTES 374
[Close]
BLAST of SMED30011901 vs. TrEMBL
Match: A0A0M5J0L5 (CG32486 (Fragment) OS=Drosophila busckii OX=30019 GN=Dbus_chr3Lg177 PE=4 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.746e-8
Identity = 49/181 (27.07%), Postives = 78/181 (43.09%), Query Frame = 2 
Query:  251 EKFTNKIKSYFECSKC-KMTDKFFKQCCYGHIFCYNC---------IKNNGIYCDECDKMIDSNELSLCTIPSNAHSFIKSICQFCNNQYYQDNLMTHQNEQCTRRITNCDFHIFGCLWL----ETVDKKR--LHLQSCPFQ--------NLKLKQSLELYQNFINKQKVIISNENAIFLD 721
            EK   +I +   C+ C  +      QC  GH+ C  C         +++    C  C   I  +  S       A S + S CQFCN ++   +L  H+  +C  R T C +H  GCLW     ET + +R  LH Q   ++        +LK+K+  +++   I+    ++S E  IF D
Sbjct:   87 EKLAYRISTALCCAVCLDLPKTAMYQCQMGHLMCAACFTHLLADGRLRDQIATCPNCRVEISKSTASRNLAVEKAASELPSECQFCNKEFPYKSLERHEQHECQERPTKCKYHRIGCLWRGPHHETTEHERNCLHPQKSGYEVMAALEAHDLKIKEEKKMFSTLID----LLSYEKIIFND 263
[Close]
BLAST of SMED30011901 vs. TrEMBL
Match: A0A504YZ88 (Uncharacterized protein OS=Fasciola gigantica OX=46835 GN=FGIG_07182 PE=4 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 1.043e-7
Identity = 62/316 (19.62%), Postives = 125/316 (39.56%), Query Frame = 2 
Query:  200 NINYIEVTILNMSKNDIEKFTNKIKSYFECSKCKMTDKFFKQCCYGHIFCYNCIKN-------NGIYCDECDKMIDSNELSLCTIPSNAHSFIKSICQFCNNQYYQDNLMTHQNEQCTRRITNCDFHIFGCLWLETVDKKRLHLQSCPFQNLKLKQSLELYQNFINKQKVIISNENAIFLDCLSKIKQLNNGLRLAIKEVILTKSQLSFVSNTIYCIKFASSTFYLPFSCCVSHGFNFELYLVIDKSRNTKKIRYIIKSDNEYLLKLYYCLISFSLIEDEENFPFSDMFHWHEFERNNEESAANEIKIKYDKNDEN 1126
            N +  E++  N  + + +     ++S   C+ C    +   QC  GH+ C +C          +   C  C   +    L  C +     + + S C+FC ++  +     H+   C  R   C F + GC W    ++   H   C ++  +L +   +    +++ ++  +  N      L+++ +   GL+   K V +++   S  S        ++S     F CC       E+ +   +     ++RY +KS +E   ++ +CL      + E  F  +D  H   F  N +ES+    K+ Y +  E+
Sbjct:   69 NSSESEISQNNQHEREEQALQEIVRSLLTCAVCLDVPRQAFQCSNGHLICVHCATRLLQQQSPSDAVCPSCRIPLQFG-LRRCLLAEQLAAELPSNCRFCGSKMVRKLTELHETTICPSRPVTCRFSVVGCPWSGKWNQLESHTVHCAYKEKRLHEVESVLVAALDQNQIWQAERNQFSRGLLTRLAKSPGGLKAFRKLVGVSRETQSLESEEGIATYQSTSNL---FRCCGLKRVTLEVTINYIQG----ELRYRVKSKSEQASEILFCLCLVRCGDAE--FDVNDQLHNFRFTSNQKESSDYLTKLIYRRTTES 374
[Close]
BLAST of SMED30011901 vs. Ensembl Cavefish
Match: cyhr1 (cysteine and histidine rich 1 [Source:NCBI gene;Acc:103031594])

HSP 1 Score: 50.0618 bits (118), Expect = 3.172e-6
Identity = 34/130 (26.15%), Postives = 52/130 (40.00%), Query Frame = 2 
Query:  227 LNMSKNDIEKFTNKIKSYFECSKC-KMTDKFFKQCCYGHIFCYNC---------IKNNGIYCDECDKMIDSNELSLC---TIPSNAHSFIKSICQFCNNQYYQDNLMTHQNEQCTRRITNCDFHIFGCLW 577
            + + + +  K   ++ S   C+ C  +      QC  GH+ C  C         +K     C  C   I     SLC        A S + S C +C  Q+ + +L  HQ E+C  R+T C +   GC W
Sbjct:   70 VRLQEGEAGKLEERLYSVLCCTVCLDLPKASVYQCTNGHLMCAGCFIHLLADARLKEEQATCPNCRCEISK---SLCCRNLAVEKAVSELPSDCSYCLKQFPRSSLDHHQTEECQDRLTQCKYKRIGCPW 196
[Close]
BLAST of SMED30011901 vs. Ensembl Nematostella
Match: EDO46014 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RRI7])

HSP 1 Score: 58.151 bits (139), Expect = 1.530e-9
Identity = 40/152 (26.32%), Postives = 65/152 (42.76%), Query Frame = 2 
Query:  329 CYGHIFCYNCIKNNGIYCDECDKMIDSNELSLCTIPSNAHSFIKSICQFCNNQYYQDNLMTHQNEQCTRRITNCDFHIFGCLWLETVDKKRLHLQSCPFQNLKLKQSLELYQNFINKQKVIISNENAIFLDCLSKIKQLNNGLRLAIKEVIL 784
            C+ H+     +K+    C  C   I  N  S       A S + + CQFC+N++ +     H+ E+C+ R+  C +   GC W     +  LH  +CP      K  LEL +         I  +N + L  L  I  L +  ++AI ++ L
Sbjct:    5 CFTHLLADARLKDEQATCPSCRIDISRNNCSRNLAVEKAVSELPTACQFCDNEFPRSIASIHEREECSDRLVRCKYKRLGCPWQGPHHELALHEGACPHPG---KTGLELMEAL-----NAIDEKNEMELQTLGTIVGLLSFEKIAINDLQL 148
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BLAST of SMED30011901 vs. Ensembl Medaka
Match: cyhr1 (cysteine and histidine rich 1 [Source:NCBI gene;Acc:101156262])

HSP 1 Score: 51.9878 bits (123), Expect = 8.870e-7
Identity = 34/141 (24.11%), Postives = 53/141 (37.59%), Query Frame = 2 
Query:  227 LNMSKNDIEKFTNKIKSYFECSKC-KMTDKFFKQCCYGHIFCYNC---------IKNNGIYCDECDKMIDSNELSLCTIPSNAHSFIKSICQFCNNQYYQDNLMTHQNEQCTRRITNCDFHIFGCLWLETVDKKRLHLQSC 619
            + + + +  K   ++ S   C+ C  +      QC  GH+ C  C         +K     C  C   I  N          A S + + C FC  Q+ + +L  HQ E+C  R+T C +   GC W     +   H   C
Sbjct:   77 VRIQEGESGKLEERLYSVLCCTVCLDLPKASVYQCTNGHLMCAGCFIHLLADSRLKEEQATCPNCRCEISKNLCCRNLAVEKAVSELPTDCTFCLKQFPRSSLERHQKEECQDRVTQCKYKRIGCPWQGPFHELPAHESEC 217
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BLAST of SMED30011901 vs. Ensembl Medaka
Match: cyhr1 (cysteine and histidine rich 1 [Source:NCBI gene;Acc:101156262])

HSP 1 Score: 50.0618 bits (118), Expect = 2.534e-6
Identity = 30/108 (27.78%), Postives = 41/108 (37.96%), Query Frame = 2 
Query:  323 QCCYGHIFCYNC---------IKNNGIYCDECDKMIDSNELSLCTIPSNAHSFIKSICQFCNNQYYQDNLMTHQNEQCTRRITNCDFHIFGCLWLETVDKKRLHLQSC 619
            QC  GH+ C  C         +K     C  C   I  N          A S + + C FC  Q+ + +L  HQ E+C  R+T C +   GC W     +   H   C
Sbjct:   13 QCTNGHLMCAGCFIHLLADSRLKEEQATCPNCRCEISKNLCCRNLAVEKAVSELPTDCTFCLKQFPRSSLERHQKEECQDRVTQCKYKRIGCPWQGPFHELPAHESEC 120
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BLAST of SMED30011901 vs. Planmine SMEST
Match: SMESG000007190.1 (SMESG000007190.1)

HSP 1 Score: 741.495 bits (1913), Expect = 0.000e+0
Identity = 367/367 (100.00%), Postives = 367/367 (100.00%), Query Frame = 2 
Query:   32 MNENLISYPVNLFNNFLQRFGLKRKFENNVQYNLNPLIKATKRNINENDAVKNKIRNINYIEVTILNMSKNDIEKFTNKIKSYFECSKCKMTDKFFKQCCYGHIFCYNCIKNNGIYCDECDKMIDSNELSLCTIPSNAHSFIKSICQFCNNQYYQDNLMTHQNEQCTRRITNCDFHIFGCLWLETVDKKRLHLQSCPFQNLKLKQSLELYQNFINKQKVIISNENAIFLDCLSKIKQLNNGLRLAIKEVILTKSQLSFVSNTIYCIKFASSTFYLPFSCCVSHGFNFELYLVIDKSRNTKKIRYIIKSDNEYLLKLYYCLISFSLIEDEENFPFSDMFHWHEFERNNEESAANEIKIKYDKNDENID 1132
            MNENLISYPVNLFNNFLQRFGLKRKFENNVQYNLNPLIKATKRNINENDAVKNKIRNINYIEVTILNMSKNDIEKFTNKIKSYFECSKCKMTDKFFKQCCYGHIFCYNCIKNNGIYCDECDKMIDSNELSLCTIPSNAHSFIKSICQFCNNQYYQDNLMTHQNEQCTRRITNCDFHIFGCLWLETVDKKRLHLQSCPFQNLKLKQSLELYQNFINKQKVIISNENAIFLDCLSKIKQLNNGLRLAIKEVILTKSQLSFVSNTIYCIKFASSTFYLPFSCCVSHGFNFELYLVIDKSRNTKKIRYIIKSDNEYLLKLYYCLISFSLIEDEENFPFSDMFHWHEFERNNEESAANEIKIKYDKNDENID
Sbjct:    1 MNENLISYPVNLFNNFLQRFGLKRKFENNVQYNLNPLIKATKRNINENDAVKNKIRNINYIEVTILNMSKNDIEKFTNKIKSYFECSKCKMTDKFFKQCCYGHIFCYNCIKNNGIYCDECDKMIDSNELSLCTIPSNAHSFIKSICQFCNNQYYQDNLMTHQNEQCTRRITNCDFHIFGCLWLETVDKKRLHLQSCPFQNLKLKQSLELYQNFINKQKVIISNENAIFLDCLSKIKQLNNGLRLAIKEVILTKSQLSFVSNTIYCIKFASSTFYLPFSCCVSHGFNFELYLVIDKSRNTKKIRYIIKSDNEYLLKLYYCLISFSLIEDEENFPFSDMFHWHEFERNNEESAANEIKIKYDKNDENID 367
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BLAST of SMED30011901 vs. Planmine SMEST
Match: SMESG000023276.1 (SMESG000023276.1)

HSP 1 Score: 114.775 bits (286), Expect = 8.078e-27
Identity = 82/349 (23.50%), Postives = 156/349 (44.70%), Query Frame = 2 
Query:  152 TKRNINENDAVKNKIRNINYIEVTILNMSKNDIEKFTNKIKSYFECSKCKMTDKFFKQCCYGHIFCYNCIKN-----NGIYCDECDKMIDSNELSLCTIPSNAHSFIKSICQFCNNQYYQDNLMTHQNEQCTRRITNCDFHIFGCLWLETVDKKRLHLQSCPFQNLKLKQSLELYQNFINKQKVIISNENAIFLDCLSKIKQLNNGLRLAIKEVILTKSQLSFVSNTIYCIKFASSTFYLPFSCCVSHGFNFELYLVIDKSRNTKKIRYIIKSDNEYLLKLYYCLISFSLIEDEENFPFSDMFHWHEFERNNEESAANEIKIKYDKNDENIDKLINSTNIKLMLCILVE 1183
            ++R I+EN  +  K + +N +   I    +N    F   +K+   CS C     +  QC  GH+ C  C          + C  C ++     L    +     S + + C+FC+       +  H+ ++CT+R+  C + +FGC W+   +  + H   C   N  +    E+    I +    + +   ++   +SK++    G R+ I++  L KS     + T+    F S    +PF+CC  HGF  ++Y+        +K+ Y+++S+N   + L + L+S   I +  N    D  H H FE ++++S+ +E K+      +++ K+     I + +CIL E
Sbjct:   59 SERPISENPEITVKRQRLNIVADKIGPSEEN---SFMEIMKNLLSCSICLEVSSYSNQCPNGHLICITCSGRLQQTPGDLNCPVC-RISLKQGLHRSLLAEQLTSELPAECKFCDTVMAVKYIKKHETDECTKRMVPCKYKMFGCNWIGIEELSKDHEDECSISNKTVGMLREIVNENIARDLQSLQSPLQLWKAIISKLRVQAVGSRMLIRQTTLNKSNSEDANQTV----FKSPMIRIPFTCCNLHGFYLDMYVTKMNETEPEKLHYVLRSENRTKINLMFYLLSIK-INETVNLDVQDSLHSHHFESSHKDSSLHEFKLISLDCQKDVPKIYELDTIFVEVCILSE 398
[Close]
BLAST of SMED30011901 vs. Planmine SMEST
Match: SMESG000067104.1 (SMESG000067104.1)

HSP 1 Score: 90.5077 bits (223), Expect = 3.886e-19
Identity = 94/408 (23.04%), Postives = 172/408 (42.16%), Query Frame = 2 
Query:  164 INENDAVKNKIRNINY-IEVTILNMSKN-DIEKFTNKIKSYFECSKCKMTDKFFKQCCYGHIFCYNCIKNNGIYCDECDKMIDSNELSLCTIPSNAH-----------SFIKSICQFCNNQYYQDNLMTHQNEQCTRRITNCDFHIFGCLWLETVDKKRLHLQSCPFQNLKLKQSLELYQNFINKQKVIISNENAIFLDCLSKIKQLNNGLRLAIKEVILTKSQLSFVSNTIYCIKFASSTFYLPFSCCVSHGFNFELYLVIDKSRNTKKIRYIIKSDNEYLLKLYYCLISFSLIEDEENFPFSDMFHWHEFERNNEESAANEIKIKYDKN-DENIDKLINSTNIKLMLCILVEDLNLQKLQLFDGV-RNRLEMDNFMSLFLSSMRTLNSDREDNLDASRLIPRMVNT 1342
             NEND    KI N    +++   ++  N D   F   +K    CS C    K   QC  GH+ C NC       C +           +C +P   +           S + + C+FC+       +  H++E C  R  NC + +FGC W     +++LH   C      +  + E   + +  Q       N+ + + ++K+++ NNGL++ +K ++LTK +      T  C K     F+        H F  +  +  DK   TK + Y +K  +++ L + + L   S+  D++ F   D  H+H F    +E  A    I + KN  E ++ L+ +   K  L I +  L ++  +  D    N L++D   ++     + +N+ R    +A  L+  ++++
Sbjct:   35 TNENDENNYKILNKKPKLDIMTQSLQDNFDQTAFIEVMKKLLTCSVCLEVRKQANQCQNGHLICINCT-----LCLQQSSSSKEINCPVCRVPLTGYYQRSLLAEQLVSELPTKCRFCSTTMSVRQMQQHESEICPARTINCQYALFGCPWKGVAKQRKLHESLCNVGLSTVALACETVHSNLKNQFSYYEKRNSQWQNTVNKLRERNNGLKIYMKHLVLTKYKDQPSIKT--CFKTTKLEFF-------RHQFQLKFNIGKDKKSATKSMFYKLKYVSKHNLTVNFFL--HSIRYDDDTFELDDNLHYHSFSE--DEQNAGRYNIHFSKNKPETVNSLLETLTTKDSLYIEIV-LMIESNESLDSTNTNNLQIDTSETI----SQAINNSRSGTSNAGNLVVALISS 419
The following BLAST results are available for this feature:
BLAST of SMED30011901 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 3
Match NameE-valueIdentityDescription
CYHR11.373e-624.55cysteine and histidine rich 1 [Source:HGNC Symbol;... [more]
CYHR14.625e-625.52cysteine and histidine rich 1 [Source:HGNC Symbol;... [more]
CYHR15.918e-625.17cysteine and histidine rich 1 [Source:HGNC Symbol;... [more]
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BLAST of SMED30011901 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30011901 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 1
Match NameE-valueIdentityDescription
CG324868.404e-1026.20gene:FBgn0266918 transcript:FBtr0073004[more]
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BLAST of SMED30011901 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 1
Match NameE-valueIdentityDescription
cyhr16.939e-725.00cysteine/histidine-rich 1 [Source:NCBI gene;Acc:76... [more]
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BLAST of SMED30011901 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30011901 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 3
Match NameE-valueIdentityDescription
Cyhr13.071e-625.87cysteine and histidine rich 1 [Source:MGI Symbol;A... [more]
Cyhr13.440e-624.55cysteine and histidine rich 1 [Source:MGI Symbol;A... [more]
Cyhr18.904e-627.41cysteine and histidine rich 1 [Source:MGI Symbol;A... [more]
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BLAST of SMED30011901 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 2
Match NameE-valueIdentityDescription
sp|Q9VZV5|CYHR1_DROME8.425e-926.20Cysteine and histidine-rich protein 1 homolog OS=D... [more]
sp|Q08CH8|CYHR1_DANRE5.322e-625.00Cysteine and histidine-rich protein 1 OS=Danio rer... [more]
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BLAST of SMED30011901 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A183AWV31.175e-1022.44Uncharacterized protein OS=Echinostoma caproni OX=... [more]
D6WMC91.449e-829.50Cysteine and histidine-rich protein 1 homolog-like... [more]
A0A4E0QZJ71.855e-819.62Uncharacterized protein OS=Fasciola hepatica OX=61... [more]
A0A0M5J0L54.746e-827.07CG32486 (Fragment) OS=Drosophila busckii OX=30019 ... [more]
A0A504YZ881.043e-719.62Uncharacterized protein OS=Fasciola gigantica OX=4... [more]
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BLAST of SMED30011901 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 1
Match NameE-valueIdentityDescription
cyhr13.172e-626.15cysteine and histidine rich 1 [Source:NCBI gene;Ac... [more]
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BLAST of SMED30011901 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30011901 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30011901 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 1
Match NameE-valueIdentityDescription
EDO460141.530e-926.32Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of SMED30011901 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 2
Match NameE-valueIdentityDescription
cyhr18.870e-724.11cysteine and histidine rich 1 [Source:NCBI gene;Ac... [more]
cyhr12.534e-627.78cysteine and histidine rich 1 [Source:NCBI gene;Ac... [more]
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BLAST of SMED30011901 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 3
Match NameE-valueIdentityDescription
SMESG000007190.10.000e+0100.00SMESG000007190.1[more]
SMESG000023276.18.078e-2723.50SMESG000023276.1[more]
SMESG000067104.13.886e-1923.04SMESG000067104.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30011901 ID=SMED30011901|Name=SMED30011901|organism=Schmidtea mediterranea sexual|type=transcript|length=1516bp
GATTCGTCTATTTATTTTAAATTAATATAAAATGAATGAAAATCTGATTT
CATATCCAGTAAATTTATTTAATAATTTCCTACAACGTTTTGGATTGAAA
AGGAAGTTTGAGAACAATGTTCAATATAATCTAAATCCATTAATTAAAGC
AACGAAAAGAAACATAAATGAAAATGACGCTGTTAAAAATAAAATTAGAA
ATATCAATTACATTGAAGTTACTATACTGAATATGAGTAAAAATGATATT
GAAAAATTTACGAATAAAATAAAATCATATTTTGAATGCTCTAAATGCAA
AATGACTGATAAATTCTTCAAACAATGTTGTTATGGACATATTTTTTGTT
ATAATTGCATAAAAAATAATGGAATCTACTGTGACGAATGTGACAAAATG
ATAGACAGTAATGAGTTATCGCTGTGTACAATTCCCAGTAACGCACATTC
ATTTATCAAATCTATTTGCCAGTTTTGTAATAACCAATACTATCAAGACA
ATTTGATGACTCATCAAAATGAACAATGTACTCGGCGTATTACAAATTGT
GATTTTCATATTTTTGGTTGTTTGTGGCTCGAAACAGTTGACAAAAAACG
GCTTCATCTTCAGAGCTGCCCATTTCAAAATTTGAAATTGAAGCAATCCC
TTGAACTTTATCAAAATTTTATTAATAAACAAAAAGTTATAATTTCTAAT
GAAAATGCGATATTTCTAGATTGCCTCTCGAAAATAAAGCAACTAAACAA
TGGTCTGAGATTAGCGATTAAAGAAGTAATTTTAACAAAATCTCAATTAA
GTTTTGTAAGTAATACTATTTATTGCATAAAGTTCGCGAGCTCTACTTTC
TATCTGCCATTTAGCTGTTGCGTTTCTCATGGATTTAATTTTGAGTTGTA
TTTAGTCATAGACAAGTCACGAAACACGAAAAAAATTCGGTATATTATAA
AATCTGATAACGAATATTTATTGAAATTATATTATTGCTTAATAAGTTTT
AGTTTAATTGAAGATGAAGAAAATTTTCCATTTTCTGACATGTTTCATTG
GCATGAATTCGAAAGAAACAATGAAGAATCAGCTGCTAATGAAATTAAAA
TTAAATACGATAAAAATGATGAAAATATTGATAAGTTAATTAATAGCACA
AATATTAAACTGATGTTATGCATTTTAGTGGAAGACTTAAATTTACAAAA
ATTACAATTATTTGACGGAGTTAGAAATCGATTGGAAATGGATAATTTTA
TGTCACTTTTTCTTTCTTCAATGAGAACTTTAAATTCAGATAGAGAAGAT
AATCTTGATGCTTCAAGGCTAATTCCAAGAATGGTTAATACGAGTAATGA
CCGATATTCCAATTAATTTTCTCATTTTTACAAATTCCAAGATTTTATTT
TGTATTTGACTCTTAACATTCTTAATTTGTGTTTTTACACACTAAAATTA
CAATATTATTTATTAGTTTTTAAATGCAAAATGTGATTTTATGAATATTG
TTTGATTCAATCTGGC
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protein sequence of SMED30011901-orf-1

>SMED30011901-orf-1 ID=SMED30011901-orf-1|Name=SMED30011901-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=445bp
MNENLISYPVNLFNNFLQRFGLKRKFENNVQYNLNPLIKATKRNINENDA
VKNKIRNINYIEVTILNMSKNDIEKFTNKIKSYFECSKCKMTDKFFKQCC
YGHIFCYNCIKNNGIYCDECDKMIDSNELSLCTIPSNAHSFIKSICQFCN
NQYYQDNLMTHQNEQCTRRITNCDFHIFGCLWLETVDKKRLHLQSCPFQN
LKLKQSLELYQNFINKQKVIISNENAIFLDCLSKIKQLNNGLRLAIKEVI
LTKSQLSFVSNTIYCIKFASSTFYLPFSCCVSHGFNFELYLVIDKSRNTK
KIRYIIKSDNEYLLKLYYCLISFSLIEDEENFPFSDMFHWHEFERNNEES
AANEIKIKYDKNDENIDKLINSTNIKLMLCILVEDLNLQKLQLFDGVRNR
LEMDNFMSLFLSSMRTLNSDREDNLDASRLIPRMVNTSNDRYSN*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0002109X1 cell
Vocabulary: INTERPRO
TermDefinition
IPR039338CYHR1
Vocabulary: molecular function
TermDefinition
GO:0003674molecular_function
GO:0004842ubiquitin-protein transferase activity
GO:0008270zinc ion binding
GO:0046872metal ion binding
Vocabulary: cellular component
TermDefinition
GO:0005575cellular_component
Vocabulary: biological process
TermDefinition
GO:0008150biological_process
GO:0016567protein ubiquitination
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR039338Cysteine and histidine-rich protein 1PANTHERPTHR23059FAMILY NOT NAMEDcoord: 44..208