SMED30011833

Overview
NameSMED30011833
Smed IDSMED30011833
Length (bp)2221
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30011833 (SMED30011833) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30011833 (SMED30011833) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30011833 (SMED30011833) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30011833 (SMED30011833) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30011833

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 16

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
Smed sexual biotypeSMED30011833SMESG000081199.1 SMESG000076404.1 SMESG000075565.1 SMESG000072273.1 SMESG000072061.1 SMESG000070010.1 SMESG000069658.1 SMESG000068312.1 SMESG000068042.1 SMESG000067818.1 SMESG000066383.1 SMESG000061623.1 SMESG000057612.1 SMESG000056465.1 SMESG000054620.1 SMESG000051141.1 SMESG000044801.1 SMESG000043241.1 SMESG000042662.1 SMESG000041483.1 SMESG000039424.1 SMESG000033772.1 SMESG000033266.1 SMESG000023001.1 SMESG000022351.1 SMESG000012636.1 SMESG000010351.1 SMESG000009500.1 SMESG000008761.1 SMESG000005685.1 SMESG000002786.1 SMESG000001901.1 SMESG000001786.1 Contig22022uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30011833SMESG000081199.1 SMESG000076404.1 SMESG000075565.1 SMESG000072273.1 SMESG000072061.1 SMESG000070010.1 SMESG000069658.1 SMESG000068312.1 SMESG000068042.1 SMESG000067818.1 SMESG000066383.1 SMESG000061623.1 SMESG000057612.1 SMESG000056465.1 SMESG000054620.1 SMESG000051141.1 SMESG000044801.1 SMESG000043241.1 SMESG000042662.1 SMESG000041483.1 SMESG000039424.1 SMESG000033772.1 SMESG000033266.1 SMESG000023001.1 SMESG000022351.1 SMESG000012636.1 SMESG000010351.1 SMESG000009500.1 SMESG000008761.1 SMESG000005685.1 SMESG000002786.1 SMESG000001901.1 SMESG000001786.1 Contig22022newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30011833SMESG000079796.1 SMESG000078709.1 SMESG000076757.1 SMESG000075565.1 SMESG000072273.1 SMESG000072061.1 SMESG000071677.1 SMESG000070010.1 SMESG000068042.1 SMESG000067088.1 SMESG000066383.1 SMESG000060756.1 SMESG000057612.1 SMESG000027834.1 SMESG000026430.1 SMESG000018073.1 SMESG000017570.1 SMESG000017358.1 SMESG000017347.1 SMESG000014790.1 SMESG000014236.1 SMESG000013728.1 SMESG000007706.1 SMESG000005905.1 SMESG000001430.1 SMESG000001117.1 Contig44957uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30011833SMESG000079796.1 SMESG000078709.1 SMESG000076757.1 SMESG000075565.1 SMESG000072273.1 SMESG000072061.1 SMESG000071677.1 SMESG000070010.1 SMESG000068042.1 SMESG000067088.1 SMESG000066383.1 SMESG000060756.1 SMESG000057612.1 SMESG000027834.1 SMESG000026430.1 SMESG000018073.1 SMESG000017570.1 SMESG000017358.1 SMESG000017347.1 SMESG000014790.1 SMESG000014236.1 SMESG000013728.1 SMESG000007706.1 SMESG000005905.1 SMESG000001430.1 SMESG000001117.1 Contig44957newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30011833SMESG000081199.1 SMESG000078992.1 SMESG000076404.1 SMESG000072273.1 SMESG000072061.1 SMESG000072039.1 SMESG000070010.1 SMESG000069658.1 SMESG000068312.1 SMESG000068042.1 SMESG000067818.1 SMESG000061623.1 SMESG000058180.1 SMESG000057612.1 SMESG000056465.1 SMESG000054046.1 SMESG000051141.1 SMESG000049686.1 SMESG000048941.1 SMESG000043581.1 SMESG000043241.1 SMESG000042662.1 SMESG000040860.1 SMESG000040455.1 SMESG000039424.1 SMESG000033772.1 SMESG000033266.1 SMESG000022351.1 SMESG000015785.1 SMESG000013857.1 SMESG000012636.1 SMESG000010351.1 SMESG000009500.1 SMESG000008761.1 SMESG000007885.1 SMESG000005685.1 SMESG000003311.1 SMESG000002803.1 SMESG000002786.1 SMESG000001786.1 SMESG000000374.1 SMESG000032577.1 Contig12809newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30011833SMESG000081199.1 SMESG000078992.1 SMESG000076404.1 SMESG000072273.1 SMESG000072061.1 SMESG000072039.1 SMESG000070010.1 SMESG000069658.1 SMESG000068312.1 SMESG000068042.1 SMESG000067818.1 SMESG000061623.1 SMESG000058180.1 SMESG000057612.1 SMESG000056465.1 SMESG000054046.1 SMESG000051141.1 SMESG000049686.1 SMESG000048941.1 SMESG000043581.1 SMESG000043241.1 SMESG000042662.1 SMESG000040860.1 SMESG000040455.1 SMESG000039424.1 SMESG000033772.1 SMESG000033266.1 SMESG000022351.1 SMESG000015785.1 SMESG000013857.1 SMESG000012636.1 SMESG000010351.1 SMESG000009500.1 SMESG000008761.1 SMESG000007885.1 SMESG000005685.1 SMESG000003311.1 SMESG000002803.1 SMESG000002786.1 SMESG000001786.1 SMESG000000374.1 SMESG000032577.1 Contig12809uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
reproductive organSMED30011833SMESG000081267.1 SMESG000076047.1 SMESG000036590.1 SMESG000030608.1 Contig43511uc_Smed_v2PMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite RNA-sequencing evidence
reproductive organSMED30011833SMESG000081267.1 SMESG000076047.1 SMESG000036590.1 SMESG000030608.1 Contig43511newmark_estsPMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite RNA-sequencing evidence
oocyteSMED30011833SMESG000039142.1 Contig30028uc_Smed_v2PMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite RNA-sequencing evidence
vitelline glandSMED30011833SMESG000039142.1 Contig30028uc_Smed_v2PMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite RNA-sequencing evidence
oocyteSMED30011833SMESG000039142.1 Contig30028newmark_estsPMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite RNA-sequencing evidence
vitelline glandSMED30011833SMESG000039142.1 Contig30028newmark_estsPMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite RNA-sequencing evidence
oocyteSMED30011833SMESG000081199.1 SMESG000076404.1 SMESG000072273.1 SMESG000070010.1 SMESG000069658.1 SMESG000068312.1 SMESG000067818.1 SMESG000061623.1 SMESG000058180.1 SMESG000057612.1 SMESG000056465.1 SMESG000051141.1 SMESG000044801.1 SMESG000043241.1 SMESG000042662.1 SMESG000039424.1 SMESG000033772.1 SMESG000033494.1 SMESG000033266.1 SMESG000022351.1 SMESG000019964.1 SMESG000012636.1 SMESG000010351.1 SMESG000009500.1 SMESG000008761.1 SMESG000005685.1 SMESG000002786.1 SMESG000001786.1 SMESG000040856.1 Contig16275uc_Smed_v2PMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite RNA-sequencing evidence
vitelline glandSMED30011833SMESG000081199.1 SMESG000076404.1 SMESG000072273.1 SMESG000070010.1 SMESG000069658.1 SMESG000068312.1 SMESG000067818.1 SMESG000061623.1 SMESG000058180.1 SMESG000057612.1 SMESG000056465.1 SMESG000051141.1 SMESG000044801.1 SMESG000043241.1 SMESG000042662.1 SMESG000039424.1 SMESG000033772.1 SMESG000033494.1 SMESG000033266.1 SMESG000022351.1 SMESG000019964.1 SMESG000012636.1 SMESG000010351.1 SMESG000009500.1 SMESG000008761.1 SMESG000005685.1 SMESG000002786.1 SMESG000001786.1 SMESG000040856.1 Contig16275uc_Smed_v2PMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite RNA-sequencing evidence
oocyteSMED30011833SMESG000081199.1 SMESG000076404.1 SMESG000072273.1 SMESG000070010.1 SMESG000069658.1 SMESG000068312.1 SMESG000067818.1 SMESG000061623.1 SMESG000058180.1 SMESG000057612.1 SMESG000056465.1 SMESG000051141.1 SMESG000044801.1 SMESG000043241.1 SMESG000042662.1 SMESG000039424.1 SMESG000033772.1 SMESG000033494.1 SMESG000033266.1 SMESG000022351.1 SMESG000019964.1 SMESG000012636.1 SMESG000010351.1 SMESG000009500.1 SMESG000008761.1 SMESG000005685.1 SMESG000002786.1 SMESG000001786.1 SMESG000040856.1 Contig16275newmark_estsPMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite RNA-sequencing evidence
vitelline glandSMED30011833SMESG000081199.1 SMESG000076404.1 SMESG000072273.1 SMESG000070010.1 SMESG000069658.1 SMESG000068312.1 SMESG000067818.1 SMESG000061623.1 SMESG000058180.1 SMESG000057612.1 SMESG000056465.1 SMESG000051141.1 SMESG000044801.1 SMESG000043241.1 SMESG000042662.1 SMESG000039424.1 SMESG000033772.1 SMESG000033494.1 SMESG000033266.1 SMESG000022351.1 SMESG000019964.1 SMESG000012636.1 SMESG000010351.1 SMESG000009500.1 SMESG000008761.1 SMESG000005685.1 SMESG000002786.1 SMESG000001786.1 SMESG000040856.1 Contig16275newmark_estsPMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
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BLAST of SMED30011833 vs. Planmine SMEST
Match: SMESG000004697.1 (SMESG000004697.1)

HSP 1 Score: 227.254 bits (578), Expect = 7.448e-63
Identity = 120/159 (75.47%), Postives = 127/159 (79.87%), Query Frame = 1 
Query: 1333 REEDEIIKNMKFMVNRTEKIVEDIPFDYEKILNLPPLERKK-AFQSIFSYMFDENNKWMRIIVGLMYMKHMILNLDPTMKIISSGL*RYITLYC**FXXXXXXETKIDPWVESNGGWIAIIQVAAEAKRSDIYIENCKFLLKLFTGVSVLYLCNKVYHR 1806
            REED+IIKNMKFMVNRTEKIVEDIPFDYEKILNL  LE+KK +FQSIFSYMFDENNKWMRIIV LMYMKH+IL          S    Y   +        VIETKIDPWVE+NGGW AIIQV+AEAKRSDIYIENCKFLLKL TG SVLYLCNKVYHR
Sbjct:  809 REEDDIIKNMKFMVNRTEKIVEDIPFDYEKILNLTTLEKKKNSFQSIFSYMFDENNKWMRIIVELMYMKHLILKS-------GSDYENYFQWFI------EVIETKIDPWVETNGGWSAIIQVSAEAKRSDIYIENCKFLLKLLTGASVLYLCNKVYHR 954
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BLAST of SMED30011833 vs. Planmine SMEST
Match: SMESG000081267.1 (SMESG000081267.1)

HSP 1 Score: 164.081 bits (414), Expect = 2.094e-50
Identity = 85/98 (86.73%), Postives = 88/98 (89.80%), Query Frame = 1 
Query: 1255 YTFIYFYKMPETKFFITLLNELVSNNREEDEIIKNMKFMVNRTEKIVEDIPFDYEKILNLPPLERKKAFQSIFSYMFDENNKWMRIIVGLMYMKHMIL 1548
            Y F YF     TK FITLLNELVSNNRE+D IIKN+KFMVNRTEKIVEDIPFDYEKILNLP LERKK+FQSIFSYMFDENNKWMRIIVGLMYMKHMIL
Sbjct:  157 YIFTYFLI---TKSFITLLNELVSNNREDD-IIKNIKFMVNRTEKIVEDIPFDYEKILNLPTLERKKSFQSIFSYMFDENNKWMRIIVGLMYMKHMIL 250

HSP 2 Score: 39.6614 bits (91), Expect = 2.094e-50
Identity = 18/18 (100.00%), Postives = 18/18 (100.00%), Query Frame = 2 
Query: 1157 SANKSSLPFPLYIFTYFL 1210
            SANKSSLPFPLYIFTYFL
Sbjct:  146 SANKSSLPFPLYIFTYFL 163

HSP 3 Score: 36.5798 bits (83), Expect = 2.094e-50
Identity = 15/16 (93.75%), Postives = 16/16 (100.00%), Query Frame = 3 
Query: 1545 IKSGSDYENYFQWSIE 1592
            +KSGSDYENYFQWSIE
Sbjct:  250 LKSGSDYENYFQWSIE 265
[Close]
BLAST of SMED30011833 vs. Planmine SMEST
Match: SMESG000038292.1 (SMESG000038292.1)

HSP 1 Score: 148.288 bits (373), Expect = 4.309e-37
Identity = 85/141 (60.28%), Postives = 98/141 (69.50%), Query Frame = 1 
Query: 1279 MPETKFFITLLNELVSNNREEDEIIKNMKFMVNRTEKIVEDIPFDYEKILNLPPLERKK-AFQSIFSYMFDENNKWMRIIVGLMYMKHMIL--------NLDPTMKIISSGL*RYITLYC**FXXXXXXETKIDPWVESNG 1674
            MPETKFFI+LLNELV+NN EED+IIKN+KFMVN T+ IVEDIPF  E ILNL  LERKK +FQSIFSYMFD+N KWMRII+GLMYMKHMIL        +   ++++I                     ETKIDPWVE NG
Sbjct:    1 MPETKFFISLLNELVANNGEEDDIIKNIKFMVNHTDNIVEDIPF--EPILNLSTLERKKNSFQSIFSYMFDKNIKWMRIIIGLMYMKHMILKSGSDYENDFQWSIEVI---------------------ETKIDPWVEENG 118
[Close]
BLAST of SMED30011833 vs. Planmine SMEST
Match: SMESG000066383.1 (SMESG000066383.1)

HSP 1 Score: 122.479 bits (306), Expect = 1.836e-28
Identity = 79/123 (64.23%), Postives = 87/123 (70.73%), Query Frame = -2 
Query: 1864 LEYLINFLFDKLEEITGVKIRDMLTLVEALXXXXXXXXXXXXXXXXXXDEIVNDG--DTEIINDSEEIIN------------VEEATE--KDEPTEFKNCIDHVIENIMIESCGDEECTCNNQ 2184
            +EYL+NFLFDKLEEITGVKIRD+LTLVEALSKE  C             EIVNDG  +TEIINDS+EII+             E+ TE  KDE TEFKNCIDHVIENIMIE CGDEE +CNNQ
Sbjct:  770 IEYLVNFLFDKLEEITGVKIRDLLTLVEALSKEDSCCDSGCQSDDT---EIVNDGEINTEIINDSQEIIDDTLINDEENINDTEDTTEITKDEATEFKNCIDHVIENIMIEYCGDEESSCNNQ 889
[Close]
BLAST of SMED30011833 vs. Planmine SMEST
Match: SMESG000072273.1 (SMESG000072273.1)

HSP 1 Score: 109.383 bits (272), Expect = 3.733e-28
Identity = 81/84 (96.43%), Postives = 82/84 (97.62%), Query Frame = -2 
Query: 1873 MLTLVEALXXXXXXXXXXXXXXXXXXDEIVNDGDTEIINDSEEIINVEEATE--KDEPTEFKNCIDHVIENIMIESCGDEECTC 2118
            MLTLVEALSKESDC+SECQSDSGCQSDEIVNDGDTEIINDSEEIINVEEATE  KDEPTEFKNCIDHVIENIMIESCGDEECTC
Sbjct:    1 MLTLVEALSKESDCESECQSDSGCQSDEIVNDGDTEIINDSEEIINVEEATEIIKDEPTEFKNCIDHVIENIMIESCGDEECTC 84
The following BLAST results are available for this feature:
BLAST of SMED30011833 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30011833 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30011833 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30011833 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30011833 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30011833 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30011833 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30011833 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30011833 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30011833 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30011833 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30011833 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30011833 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30011833 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000004697.17.448e-6375.47SMESG000004697.1[more]
SMESG000081267.12.094e-5086.73SMESG000081267.1[more]
SMESG000038292.14.309e-3760.28SMESG000038292.1[more]
SMESG000066383.11.836e-2864.23SMESG000066383.1[more]
SMESG000072273.13.733e-2896.43SMESG000072273.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30011833 ID=SMED30011833|Name=SMED30011833|organism=Schmidtea mediterranea sexual|type=transcript|length=2221bp
TTGCTGCTGATTTTGTTTCAATTCATCAATGTGCAGTTGGGTGTTGTCCC
AGTCATTCCGATTTGCTGTCTCATCTGCATTGAATTTACACATCAATAAC
AAATCAAACTCTAGATTTTGAGGCGATCGCTATAAAATCTCTGGTTGATT
AACATTGTTTGTTCATACTAATAATGCCGACATAAAGAATAAAATCCTAA
AAGTTCACTCCTTTGTTACTTTAAAATTTGGATTACCAAAGGAGTGAATT
CTTAGGATTTAAGGTTTAAATAACAAAATCAAAACAACTGAAGATAATGA
TATTATCCCCAGCTAATAACCTATCTTAAGTTCTTGATACCATAAAAATC
AGATCGTTATTTTTAACTATTATTATGAAAAGTAGAAAAATTTGTGCGAT
GACTTTGTATATCCTTTTATCTTTCTTCTTGCATTAAGTTCTATTTTTCT
ATAATTTAGGCTCTAACCTAATATCAAAGGACTTATTTATTGCTGATTTA
TCATTGGATAGCTTTTAATGTTATTGACGTTCTTATTTATTGTCATGCAG
GCCCTTAATTATTTTGACTAGATGTATTATAGTGATATTTTGTGGGCGAG
TCTGTACAAGAGGTCTAATGAGGATTCCTTATAAACATTATGTAAGTCAA
TTATTTATTGAATTGCGCTCACTTAAAACTAAATAAAGATTTATTGTTTT
AATTGAAACACTAAATCCATTCAAATCACTATCAATTGTGTCTCATTTAG
GGCTCCAAGTTACTCGCCTTGGAATTTATTGAACGAAACTGACAACCTTT
ATCTTTTTCAACATAAAACCAAATTCTAAATTTCGAAGTGATTGCTTAAA
AAGCTACGGTTGATTAATGTAGTTTGGCCACACAAATTATGTCGGTATGG
AGATAAGATTCTTTAGAGTAGACTCTTGATTTTTTCCAGTTTATCATAAT
ATTAAATTCACCTGTTTTACTGGGTACGGATAGAAGAAATATGTATTAAT
GTCAGTAAGAATATTGAACAGATCCCTATCAAGCACGCGCATAACAAGAT
GTTAATACTAAATACCCGTCGGAAATGATGTATGTAATGTGTAATAGCGG
GTGAAATTTCTAGTAAAAATTGATTTTTTCTGCAAACTGCTATTTTCCTA
ACATTCAGTGCCAACAAATCATCATTGCCATTTCCATTATATATTTTTAC
ATATTTTCTTAGTATTACATGATTCTGATTGGTCGAATATAGTATAAATA
AGCTTACACTTTCATATATTTTTATAAAATGCCAGAAACTAAATTTTTTA
TAACTTTGTTGAATGAGCTGGTCTCTAATAATAGAGAAGAAGATGAAATC
ATTAAAAACATGAAATTTATGGTAAACCGTACCGAGAAAATCGTTGAAGA
CATCCCATTCGATTATGAAAAAATTCTCAATTTGCCACCATTGGAGAGAA
AGAAGGCATTCCAATCAATATTTAGTTACATGTTCGATGAAAATAATAAA
TGGATGCGAATAATAGTAGGATTAATGTACATGAAACACATGATATTAAA
TCTGGATCCGACTATGAAAATTATTTCCAGTGGTCTATAGAGGTATATTA
CTTTATATTGTTAATAATTTATTATTATTTAGGTGATAGAAACAAAAATT
GATCCGTGGGTAGAATCAAACGGTGGGTGGATAGCTATTATTCAAGTTGC
CGCAGAAGCCAAACGCTCTGATATTTATATCGAGAATTGCAAATTTTTAT
TAAAACTATTCACTGGAGTATCTGTTTTATATTTATGTAACAAGGTTTAT
CATAGATTTTAATAAATATTTCTTTGTTATTTTTATTAATAAAAACTATA
TTTTAAAGATTTATTGATTATTACATGTACATTCTTCATCACCACAAGAT
TCTATCATAATATTTTCTATAACATGATCAATACAATTCTTAAATTCGGT
AGGCTCATCTTTTTCGGTAGCTTCTTCAACATTAATAATTTCTTCAGAAT
CATTAATAATTTCAGTATCTCCATCATTAACAATTTCATCACTCTGACAT
CCAGAATCACTCTGACATTCAGAATCGCAATCCGATTCTTTACTCAATGC
TTCAACTAGAGTCAACATATCTCTAATTTTTACACCGGTTATTTCTTCAA
GTTTATCAAACAAAAAGTTTATTAAATATTCTAAACGAAATTAATTAATT
ATTTTATATTTTACCATTTTC
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protein sequence of SMED30011833-orf-1

>SMED30011833-orf-1 ID=SMED30011833-orf-1|Name=SMED30011833-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=104bp
MPETKFFITLLNELVSNNREEDEIIKNMKFMVNRTEKIVEDIPFDYEKIL
NLPPLERKKAFQSIFSYMFDENNKWMRIIVGLMYMKHMILNLDPTMKIIS
SGL*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000074oocyte
PLANA:0000231vitelline gland
PLANA:0002089reproductive organ
Vocabulary: biological process
TermDefinition
GO:0042981regulation of apoptotic process