UPF0602 protein C4orf47-like

Overview


Name	UPF0602 protein C4orf47-like
Smed ID	SMED30011676
Length (bp)	1004

Neoblast Clusters

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.

Expression of UPF0602 protein C4orf47-like (SMED30011676) t-SNE clustered cells

Violin plots show distribution of expression levels for UPF0602 protein C4orf47-like (SMED30011676) in cells (dots) of each of the 12 neoblast clusters.

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of UPF0602 protein C4orf47-like (SMED30011676) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for UPF0602 protein C4orf47-like (SMED30011676) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30011676

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 8

Expressed In	Reference Transcript	Gene Models	Published Transcript	Transcriptome	Publication
nervous system	SMED30011676	h1SMcG0001926	dd_Smed_v4_12022_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
epidermis	SMED30011676	h1SMcG0001926	dd_Smed_v4_12022_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
cephalic ganglia	SMED30011676	h1SMcG0001926	dd_Smed_v4_12022_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
cilated neuron	SMED30011676	h1SMcG0001926	dd_Smed_v4_12022_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
head region	SMED30011676	h1SMcG0001926	dd_Smed_v6_12022_0_1	dd_Smed_v6	PMID:28171748 Stückemann et al., 2017
epidermis	SMED30011676	h1SMcG0001926	dd_Smed_v6_12022_0_1	dd_Smed_v6	PMID:30399335 Ross et al., 2018
neuron	SMED30011676	h1SMcG0001926	dd_Smed_v6_12022_0_1	dd_Smed_v6	PMID:30399335 Ross et al., 2018
epidermis	SMED30011676	h1SMcG0001926	dd_Smed_v4_12022_0_1	dd_Smed_v4	PMID:28292427 Wurtzel et al., 2017

Note: Hover over icons to view figure legend

Homology

[Close]

BLAST of UPF0602 protein C4orf47-like vs. Ensembl Human
Match: C4orf47 (chromosome 4 open reading frame 47 [Source:HGNC Symbol;Acc:HGNC:34346])

HSP 1 Score: 127.102 bits (318), Expect = 1.327e-33
Identity = 101/315 (32.06%), Postives = 152/315 (48.25%), Query Frame = 1

Query:   58 LMASDKKNDLEKFGLFQEFPYQS--DLYKTPGNFEFNASSAKGKQIVIESNKTKSALNHGYFS-NFLRTFEGEAYSDPIKIRRELNRQNKDKLAGKVFHLPSIPKNPEGLGSYYGTFSGPIPAMLGETIQFSKSDEIKKRNFYTNCSKKGTGYGYVGLTFNKYPEYKSEPYGILKSSEEKENQ-------NKPFH-TVKSLDFFDSNPYKGSIFSEGKEKPVKENLKSFHVNTS------------HLSNSFNAFPKYENDVYDEKLKRNLPYIKNVMNDSKRTFGAIPGPKTMRTFSILNKNIERSINAQNYGT 933
            + A   K D+E+ GLF E  Y +  D Y +  N  FN +++K KQ++   +K  S L  GYF  +F+R FEGE Y +  ++RR    +   K  GK F   +  K P GLGSYYGT  GP+P    ++    K  +   +N YTN  KKGTGYGY  +T  K   + ++ Y   K   +K N+         PF   +   D+FD+NPY    FSE    P+K+  K   ++ +              + +F+ +P +  D Y  KL        N+     + F    GPK+    SI+  N+ R++N++NY T
Sbjct:    1 MPAEGGKTDMERIGLFSEMEYITVGDKYVSQFNRPFNEAASKNKQMLPGGSKEMSDLQAGYFDPHFVRIFEGEGYINLNQVRRRDMVEAAKKNLGKAFLPSNGEKKPCGLGSYYGTIGGPVPFFSAQSKPREKY-KAPGKNLYTNPGKKGTGYGYANITIGKQFSHSADFYDAAKLKYKKANEEHHRLLKGAPFKLNLHPRDYFDANPY----FSEESLPPIKKEEKKKTISNTFKPSSPGKKPGGMKAGTFDPYPSHSADPYVAKL-------ANISGKDDKIFHPPSGPKSRPVESIMTLNVRRALNSKNYKT 303

[Close]

BLAST of UPF0602 protein C4orf47-like vs. Ensembl Human
Match: C4orf47 (chromosome 4 open reading frame 47 [Source:HGNC Symbol;Acc:HGNC:34346])

HSP 1 Score: 98.2117 bits (243), Expect = 3.432e-24
Identity = 64/162 (39.51%), Postives = 88/162 (54.32%), Query Frame = 1

Query:   58 LMASDKKNDLEKFGLFQEFPYQS--DLYKTPGNFEFNASSAKGKQIVIESNKTKSALNHGYFS-NFLRTFEGEAYSDPIKIRRELNRQNKDKLAGKVFHLPSIPKNPEGLGSYYGTFSGPIPAMLGETIQFSKSDEIKKRNFYTNCSKKGTGYGYVGLTFNK 534
            + A   K D+E+ GLF E  Y +  D Y +  N  FN +++K KQ++   +K  S L  GYF  +F+R FEGE Y +  ++RR    +   K  GK F   +  K P GLGSYYGT  GP+P    ++    K  +   +N YTN  KKGTGYGY  +T  K
Sbjct:    1 MPAEGGKTDMERIGLFSEMEYITVGDKYVSQFNRPFNEAASKNKQMLPGGSKEMSDLQAGYFDPHFVRIFEGEGYINLNQVRRRDMVEAAKKNLGKAFLPSNGEKKPCGLGSYYGTIGGPVPFFSAQSKPREKY-KAPGKNLYTNPGKKGTGYGYANITIGK 161

[Close]

BLAST of UPF0602 protein C4orf47-like vs. Ensembl Human
Match: C4orf47 (chromosome 4 open reading frame 47 [Source:HGNC Symbol;Acc:HGNC:34346])

HSP 1 Score: 98.2117 bits (243), Expect = 5.310e-24
Identity = 64/162 (39.51%), Postives = 88/162 (54.32%), Query Frame = 1

Query:   58 LMASDKKNDLEKFGLFQEFPYQS--DLYKTPGNFEFNASSAKGKQIVIESNKTKSALNHGYFS-NFLRTFEGEAYSDPIKIRRELNRQNKDKLAGKVFHLPSIPKNPEGLGSYYGTFSGPIPAMLGETIQFSKSDEIKKRNFYTNCSKKGTGYGYVGLTFNK 534
            + A   K D+E+ GLF E  Y +  D Y +  N  FN +++K KQ++   +K  S L  GYF  +F+R FEGE Y +  ++RR    +   K  GK F   +  K P GLGSYYGT  GP+P    ++    K  +   +N YTN  KKGTGYGY  +T  K
Sbjct:    1 MPAEGGKTDMERIGLFSEMEYITVGDKYVSQFNRPFNEAASKNKQMLPGGSKEMSDLQAGYFDPHFVRIFEGEGYINLNQVRRRDMVEAAKKNLGKAFLPSNGEKKPCGLGSYYGTIGGPVPFFSAQSKPREKY-KAPGKNLYTNPGKKGTGYGYANITIGK 161

[Close]

BLAST of UPF0602 protein C4orf47-like vs. Ensembl Zebrafish
Match: C14H4orf47 (zgc:153146 [Source:NCBI gene;Acc:751702])

HSP 1 Score: 144.436 bits (363), Expect = 2.687e-40
Identity = 109/325 (33.54%), Postives = 161/325 (49.54%), Query Frame = 1

Query:   61 MASDKKNDLEKFGLFQEFPYQS--DLYKTPGNFEFNASSAKGKQIVIESNKTKSALNHGYF-SNFLRTFEGEAYSDPIKIRRELNRQNKDKLAGKVFHLPSIPKNPEGLGSYYGTFSGPIPAMLGETIQFSKSDEIKKRNFYTNCSKKGTGYGYVGLTFNKYPEYKSEPYGILKSSEEKENQNKPFHTVKSL-------------DFFDSNPYKGSIFSEGKEKPVK-ENLKSFHV----------NTSHLSNSFNAFPKYENDVYDEKLKRNLPYIKNVMNDSKRTFGAIPGPKTMRTFSILNKNIERSINAQNYGTVGSVFSL 954
            M  D K+D+E+ G+F+E  Y S  D Y +     FN S+ K KQ+++   K+K  L  GYF + F R FE EA++DP++I R+       K  GK F   +  K   G+G+YYGTF GPI AM    I   K ++   +NFYTN  KKG+GYGY  +T +K   Y S+PY        KE   +     KS+             ++FD NPYK   F +    P K E  K F V               + +F+++P Y  + Y  K  +++     V N+  + F   PGPK+    SI++ N+ +++N+ NY  + SV S 
Sbjct:    1 MPPDGKSDMERIGVFKEMGYTSIGDKYTSFIYRPFNDSAYKNKQMLLGGTKSKCGLQTGYFDTQFKRIFEREAFTDPVRIDRQYRILQAKKNIGKAFLPSNGEKTTCGMGTYYGTFGGPIQAMSALQIP-RKQNKSAGKNFYTNPPKKGSGYGYPDITLSKMVSYSSDPY-----DRAKEMLKREITAHKSMLKGGAFRLNLHPNEYFDGNPYK---FDKPLPPPKKIEEKKHFAVPFKPSSPSKKAGGMKAGAFDSYPTYSAEPYGTKKNKSV-----VANNEVKIFHPSPGPKSTPIKSIISLNVNKAVNSTNYNRIPSVMSF 311

[Close]

Query:   61 MASDKKNDLEKFGLFQEFPYQS--DLYKTPGNFEFNASSAKGKQIVIESNKTKSALNHGYF-SNFLRTFEGEAYSDPIKIRRELNRQNKDKLAGKVFHLPSIPKNPEGLGSYYGTFSGPIPAMLGETIQFSKSDEIKKRNFYTNCSKKGTGYGYVGLTFNKYPEYKSEPYGILKSSEEKENQNKPFHTVKSL-------------DFFDSNPYKGSIFSEGKEKPVK-ENLKSFHV----------NTSHLSNSFNAFPKYENDVYDEKLKRNLPYIKNVMNDSKRTFGAIPGPKTMRTFSILNKNIERSINAQNYGTVGSVFSL 954
            M  D K+D+E+ G+F+E  Y S  D Y +     FN S+ K KQ+++   K+K  L  GYF + F R FE EA++DP++I R+       K  GK F   +  K   G+G+YYGTF GPI AM    I   K ++   +NFYTN  KKG+GYGY  +T +K   Y S+PY        KE   +     KS+             ++FD NPYK   F +    P K E  K F V               + +F+++P Y  + Y  K  +++     V N+  + F   PGPK+    SI++ N+ +++N+ NY  + SV S 
Sbjct:    1 MPPDGKSDMERIGVFKEMGYTSIGDKYTSFIYRPFNDSAYKNKQMLLGGTKSKCGLQTGYFDTQFKRIFEREAFTDPVRIDRQYRILQAKKNIGKAFLPSNGEKTTCGMGTYYGTFGGPIQAMSALQIP-RKQNKSAGKNFYTNPPKKGSGYGYPDITLSKMVSYSSDPY-----DRAKEMLKREITAHKSMLKGGAFRLNLHPNEYFDGNPYK---FDKPLPPPKKIEEKKHFAVPFKPSSPSKKAGGMKAGAFDSYPTYSAEPYGTKKNKSV-----VANNEVKIFHPSPGPKSTPIKSIISLNVNKAVNSTNYNRIPSVMSF 311

[Close]

BLAST of UPF0602 protein C4orf47-like vs. Ensembl Zebrafish
Match: zgc:153146 (zgc:153146 [Source:NCBI gene;Acc:751702])

HSP 1 Score: 144.05 bits (362), Expect = 3.460e-40
Identity = 109/325 (33.54%), Postives = 161/325 (49.54%), Query Frame = 1

Query:   61 MASDKKNDLEKFGLFQEFPYQS--DLYKTPGNFEFNASSAKGKQIVIESNKTKSALNHGYF-SNFLRTFEGEAYSDPIKIRRELNRQNKDKLAGKVFHLPSIPKNPEGLGSYYGTFSGPIPAMLGETIQFSKSDEIKKRNFYTNCSKKGTGYGYVGLTFNKYPEYKSEPYGILKSSEEKENQNKPFHTVKSL-------------DFFDSNPYKGSIFSEGKEKPVK-ENLKSFHV----------NTSHLSNSFNAFPKYENDVYDEKLKRNLPYIKNVMNDSKRTFGAIPGPKTMRTFSILNKNIERSINAQNYGTVGSVFSL 954
            M  D K+D+E+ G+F+E  Y S  D Y +     FN S+ K KQ+++   K+K  L  GYF + F R FE EA++DP++I R+       K  GK F   +  K   G+G+YYGTF GPI AM    I   K ++   +NFYTN  KKG+GYGY  +T +K   Y S+PY        KE   +     KS+             ++FD NPYK   F +    P K E  K F V               + +F+++P Y  + Y  K  +++     V N+  + F   PGPK+    SI++ N+ +++N+ NY  + SV S 
Sbjct:    1 MPPDGKSDMERIGVFKEMGYISIGDKYTSFIYRPFNDSAYKNKQMLLGGTKSKCGLQTGYFDTQFKRIFEREAFTDPVRIDRQYRILQAKKNIGKAFLPSNGEKTTCGMGTYYGTFGGPIQAMSALQIP-RKQNKSAGKNFYTNPPKKGSGYGYPDITLSKMVSYSSDPY-----DRAKEMLKREITAHKSMLKGGAFRLNLHPNEYFDGNPYK---FDKPLPPPKKIEEKKHFAVPFKPSSPSKKAGGMKAGAFDSYPTYSAEPYGTKKTKSV-----VANNEVKIFHPSPGPKSTPIKSIISLNVNKAVNSTNYNRIPSVMSF 311

[Close]

BLAST of UPF0602 protein C4orf47-like vs. Ensembl Xenopus
Match: C4orf47 (chromosome 4 open reading frame 47 [Source:NCBI gene;Acc:100379819])

HSP 1 Score: 139.428 bits (350), Expect = 3.493e-38
Identity = 111/307 (36.16%), Postives = 154/307 (50.16%), Query Frame = 1

Query:   76 KNDLEKFGLFQEFPYQS--DLYKTPGNFEFNASSAKGKQIVIESNKTKSALNHGYF-SNFLRTFEGEAYSDPIKIRRELNRQNKDKLAGKVFHLPSIPKNPEGLGSYYGTFSGPIPAMLGETIQFSKSDEIKKRNFYTNCSKKGTGYGYVGLTFNKYPEYKSEPYGILKSSEEKENQNK-------PFH-TVKSLDFFDSNPYKGS-------IFSEGK--EKPVKENLKSFHVNTSHLSNSFNAFPKYENDVYDEKLKRNLPYIKNVMNDSKRTFGAIPGPKTMRTFSILNKNIERSINAQNYGTV 936
            + D+E+ GLF E  Y S  D Y  PG+  FN S++K +QI+   +K+ + +  GYF + F R FEGE+YSD +K RR+   Q   K  GK F   S  K P GLGS+YGT  GP+ A   E ++  K+     +NFYTN  K+G+GYGY  +T  K   Y SE Y I     +KE +N        PF   +   D F+ NPY          + S+ K  EKP K +           + +F+ +P + ND Y  K  +    IK      ++ F    GPKT    SIL  N+ +S+ A NY TV
Sbjct:    5 RTDMERIGLFSEMGYTSIGDKYAPPGSKPFNESASKNRQILPGGSKSMANILGGYFDAQFKRVFEGESYSDVLKQRRQYRMQQSKKNLGKPFLPSSGEKKPSGLGSFYGTVGGPVVAFSAE-LKPRKAYTAPGKNFYTNPPKQGSGYGYTSVTIGKPYLYSSENYDIATELIKKEIENHKSKLKGGPFKLNLHPKDHFNPNPYYTDKPLPPLKVHSQKKETEKPFKPSSPGKQAG-GMKAGTFDTYPTHSNDPYTIKSAKTP--IKE-----RKIFHPPGGPKTYPVHSILTSNVIKSVTAVNYKTV 302

[Close]

BLAST of UPF0602 protein C4orf47-like vs. Ensembl Mouse
Match: 1700029J07Rik (RIKEN cDNA 1700029J07 gene [Source:MGI Symbol;Acc:MGI:1916729])

HSP 1 Score: 137.502 bits (345), Expect = 1.269e-37
Identity = 103/313 (32.91%), Postives = 153/313 (48.88%), Query Frame = 1

Query:   76 KNDLEKFGLFQEFPYQS--DLYKTPGNFEFNASSAKGKQIVIESNKTKSALNHGYF-SNFLRTFEGEAYSDPIKIRRELNRQNKDKLAGKVFHLPSIPKNPEGLGSYYGTFSGPIPAMLGETIQFSKSDEIKKRNFYTNCSKKGTGYGYVGLTFNKYPEYKSEPYGILKSSEEKENQ-------NKPFHT-VKSLDFFDSNPYKGSIFSEGKEKPVKE------NLKSFHVNT------SHLSNSFNAFPKYENDVYDEKLKRNLPYIKNVMNDSKRTFGAIPGPKTMRTFSILNKNIERSINAQNYGTVGSV 945
            K D+E+ GLF E  Y +  D Y +P N  FN +++K +QI+    K  S+L  GYF S F R FEGE Y +  ++RR        K  GK F   S  K P GLGSYYGT  GP+P      I+     +   +N YTN  KKGTGYGY  +T  K   + S+ Y   + S +KE++         PF   +   D+FD+NPY    F E    P++       + K F  ++         + +F+ +P +  D Y  K+++ +P      +  +R F    GPK+    SI+  N++R++N +NY    S 
Sbjct:    7 KTDMERIGLFSEMEYITVGDKYVSPFNRPFNEAASKNRQILPGGTKEMSSLQAGYFDSQFARIFEGEGYVNLNQVRRRYMLAESKKNLGKAFIPSSGEKKPSGLGSYYGTIGGPVP-FFSAQIKPKDKYQPPGKNLYTNPGKKGTGYGYANVTIGKQLSHSSDLYDAARQSYKKESEEHHRLIKGSPFKLHLHPKDYFDTNPY----FLEHHLPPLRREEKKEVSFKPFKPSSPGKKAGGMKAGAFDPYPAHSADPYVVKVEKAIP------SKGERVFHPPNGPKSRPVESIMALNVKRALNVKNYKNASST 308

[Close]

Query:   76 KNDLEKFGLFQEFPYQS--DLYKTPGNFEFNASSAKGKQIVIESNKTKSALNHGYF-SNFLRTFEGEAYSDPIKIRRELNRQNKDKLAGKVFHLPSIPKNPEGLGSYYGTFSGPIPAMLGETIQFSKSDEIKKRNFYTNCSKKGTGYGYVGLTFNKYPEYKSEPYGILKSSEEKENQ-------NKPFHT-VKSLDFFDSNPYKGSIFSEGKEKPVKE------NLKSFHVNT------SHLSNSFNAFPKYENDVYDEKLKRNLPYIKNVMNDSKRTFGAIPGPKTMRTFSILNKNIERSINAQNYGTVGSV 945
            K D+E+ GLF E  Y +  D Y +P N  FN +++K +QI+    K  S+L  GYF S F R FEGE Y +  ++RR        K  GK F   S  K P GLGSYYGT  GP+P      I+     +   +N YTN  KKGTGYGY  +T  K   + S+ Y   + S +KE++         PF   +   D+FD+NPY    F E    P++       + K F  ++         + +F+ +P +  D Y  K+++ +P      +  +R F    GPK+    SI+  N++R++N +NY    S 
Sbjct:    7 KTDMERIGLFSEMEYITVGDKYVSPFNRPFNEAASKNRQILPGGTKEMSSLQAGYFDSQFARIFEGEGYVNLNQVRRRYMLAESKKNLGKAFIPSSGEKKPSGLGSYYGTIGGPVP-FFSAQIKPKDKYQPPGKNLYTNPGKKGTGYGYANVTIGKQLSHSSDLYDAARQSYKKESEEHHRLIKGSPFKLHLHPKDYFDTNPY----FLEHHLPPLRREEKKEVSFKPFKPSSPGKKAGGMKAGAFDPYPAHSADPYVVKVEKAIP------SKGERVFHPPNGPKSRPVESIMALNVKRALNVKNYKNASST 308

[Close]

BLAST of UPF0602 protein C4orf47-like vs. Ensembl Mouse
Match: 1700029J07Rik (RIKEN cDNA 1700029J07 gene [Source:MGI Symbol;Acc:MGI:1916729])

HSP 1 Score: 61.2326 bits (147), Expect = 2.400e-11
Identity = 40/101 (39.60%), Postives = 53/101 (52.48%), Query Frame = 1

Query:   76 KNDLEKFGLFQEFPYQS--DLYKTPGNFEFNASSAKGKQIVIESNKTKSALNHGYF-SNFLRTFEGEAYSDPIKIRRELNRQNKDKLAGKVFHLPSIPKNP 369
            K D+E+ GLF E  Y +  D Y +P N  FN +++K +QI+    K  S+L  GYF S F R FEGE Y +  ++RR        K  GK F   S  K P
Sbjct:    7 KTDMERIGLFSEMEYITVGDKYVSPFNRPFNEAASKNRQILPGGTKEMSSLQAGYFDSQFARIFEGEGYVNLNQVRRRYMLAESKKNLGKAFIPSSGEKKP 107

[Close]

BLAST of UPF0602 protein C4orf47-like vs. UniProt/SwissProt
Match: sp|Q0P4C5|CD047_DANRE (UPF0602 protein C4orf47 homolog OS=Danio rerio OX=7955 GN=zgc:153146 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.265e-37
Identity = 107/325 (32.92%), Postives = 160/325 (49.23%), Query Frame = 1

Query:   61 MASDKKNDLEKFGLFQEFPYQS--DLYKTPGNFEFNASSAKGKQIVIESNKTKSALNHGYF-SNFLRTFEGEAYSDPIKIRRELNRQNKDKLAGKVFHLPSIPKNPEGLGSYYGTFSGPIPAMLGETIQFSKSDEIKKRNFYTNCSKKGTGYGYVGLTFNKYPEYKSEPYGILKSSEEKENQNKPFHTVKSL-------------DFFDSNPYKGSIFSEGKEKPVK-ENLKSFHV----------NTSHLSNSFNAFPKYENDVYDEKLKRNLPYIKNVMNDSKRTFGAIPGPKTMRTFSILNKNIERSINAQNYGTVGSVFSL 954
            M  D K+D+E+ G+F+E  Y S  D Y +     FN S+ K KQ+++   K+K  L  GYF + F R FE EA++DP++I R+       K  GK F   +  K   G+G+YYGTF GPI AM    I   K ++   +NFYTN  K+G+GYG   +T +K   Y S+PY        KE   +     KS+             ++FD NPYK   F +    P K E  K F V               + +F+++P Y  + Y  K  +++     V N+  + F   PGPK+    SI++ N+ +++N+ NY  + SV S 
Sbjct:    1 MPPDGKSDMERIGVFKEMGYISIGDKYTSFIYRPFNDSAYKNKQMLLGGTKSKCGLQTGYFDTQFKRIFEREAFTDPVRIDRQYRILQAKKNIGKAFLPSNGEKTTCGMGTYYGTFGGPIQAMSALQIP-RKQNKSAGKNFYTNPPKEGSGYGCPDITLSKMVSYSSDPY-----DRAKEMLKREITAHKSMLKGGAFRLNLHPNEYFDGNPYK---FDKPLPPPKKIEEKKHFAVPFKPSSPSKKAGGMKAGAFDSYPTYSAEPYGTKKTKSV-----VANNEVKIFHPSPGPKSTPIKSIISLNVNKAVNSTNYNRIPSVMSF 311

[Close]

BLAST of UPF0602 protein C4orf47-like vs. UniProt/SwissProt
Match: sp|Q3U1D9|CD047_MOUSE (UPF0602 protein C4orf47 homolog OS=Mus musculus OX=10090 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 8.877e-37
Identity = 103/313 (32.91%), Postives = 153/313 (48.88%), Query Frame = 1

Query:   76 KNDLEKFGLFQEFPYQS--DLYKTPGNFEFNASSAKGKQIVIESNKTKSALNHGYF-SNFLRTFEGEAYSDPIKIRRELNRQNKDKLAGKVFHLPSIPKNPEGLGSYYGTFSGPIPAMLGETIQFSKSDEIKKRNFYTNCSKKGTGYGYVGLTFNKYPEYKSEPYGILKSSEEKENQ-------NKPFHT-VKSLDFFDSNPYKGSIFSEGKEKPVKE------NLKSFHVNT------SHLSNSFNAFPKYENDVYDEKLKRNLPYIKNVMNDSKRTFGAIPGPKTMRTFSILNKNIERSINAQNYGTVGSV 945
            K D+E+ GLF E  Y +  D Y +P N  FN +++K +QI+    K  S+L  GYF S F R FEGE Y +  ++RR        K  GK F   S  K P GLGSYYGT  GP+P      I+     +   +N YTN  KKGTGYGY  +T  K   + S+ Y   + S +KE++         PF   +   D+FD+NPY    F E    P++       + K F  ++         + +F+ +P +  D Y  K+++ +P      +  +R F    GPK+    SI+  N++R++N +NY    S 
Sbjct:    7 KTDMERIGLFSEMEYITVGDKYVSPFNRPFNEAASKNRQILPGGTKEMSSLQAGYFDSQFARIFEGEGYVNLNQVRRRYMLAESKKNLGKAFIPSSGEKKPSGLGSYYGTIGGPVP-FFSAQIKPKDKYQPPGKNLYTNPGKKGTGYGYANVTIGKQLSHSSDLYDAARQSYKKESEEHHRLIKGSPFKLHLHPKDYFDTNPY----FLEHHLPPLRREEKKEVSFKPFKPSSPGKKAGGMKAGAFDPYPAHSADPYVVKVEKAIP------SKGERVFHPPNGPKSRPVESIMALNVKRALNVKNYKNASST 308

[Close]

BLAST of UPF0602 protein C4orf47-like vs. UniProt/SwissProt
Match: sp|Q5XHC1|CD047_XENLA (UPF0602 protein C4orf47 homolog OS=Xenopus laevis OX=8355 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.393e-36
Identity = 108/310 (34.84%), Postives = 151/310 (48.71%), Query Frame = 1

Query:   76 KNDLEKFGLFQEFPYQS--DLYKTPGNFEFNASSAKGKQIVIESNKTKSALNHGYF-SNFLRTFEGEAYSDPIKIRRELNRQNKDKLAGKVFHLPSIPKNPEGLGSYYGTFSGPIPAMLGETIQFSKSDEIKKRNFYTNCSKKGTGYGYVGLTFNKYPEYKSEPYGILKSSEEKENQNKPFHTVK-----------SLDFFDSNPYKGS-------IFSEGK--EKPVKENLKSFHVNTSHLSNSFNAFPKYENDVYDEKLKRNLPYIKNVMNDSKRTFGAIPGPKTMRTFSILNKNIERSINAQNYGTV 936
            K D+E+ GLF E  Y S  D Y  PG+  FN S++K +Q++   +K+ + +  GYF   F R FEGE+YSDP K RR+   Q   K  GK F   S  K   GLGS+YGT  GP+ A   E ++  K+     +NFYTN  K G+GYGY  +T  K   Y SE Y I +   +KE ++   H  K             D+F+ NPY          + S+ K  EKP K +  +        + +F+ +P + ND Y  K  +            ++ F    GPKT    SIL  N+ +S+ A NY TV
Sbjct:    5 KTDMERIGLFSEMGYTSIGDKYAAPGSKPFNESASKNRQMLPGGSKSMANMLGGYFDGQFKRVFEGESYSDPFKQRRQHRMQQSKKNLGKPFLPSSGEKKRSGLGSFYGTLGGPVVAFSAE-LKSRKAYTAPGKNFYTNPPKDGSGYGYPSVTIGKPYPYSSENYDISRELIKKEIEH---HKSKLKGGAFKLNLHPKDYFEPNPYYTDKTLPPLKVHSQKKETEKPFKPSSPAKEAG-GMKAGTFDPYPTHSNDPYTAKPSK-------TPVKERKVFHPPGGPKTYPVHSILTSNVIKSVTALNYKTV 302

[Close]

BLAST of UPF0602 protein C4orf47-like vs. UniProt/SwissProt
Match: sp|Q2T9M0|CD047_BOVIN (UPF0602 protein C4orf47 homolog OS=Bos taurus OX=9913 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 5.866e-34
Identity = 104/319 (32.60%), Postives = 154/319 (48.28%), Query Frame = 1

Query:   58 LMASDKKNDLEKFGLFQEFPYQS--DLYKTPGNFEFNASSAKGKQIVIESNKTKSALNHGYFS-NFLRTFEGEAYSDPIKIRRELNRQNKDKLAGKVFHLPSIPKNPEGLGSYYGTFSGPIPAMLGETIQFSKSDEIKKRNFYTNCSKKGTGYGYVGLTFNKYPEYKSEPYGILKSSEEKENQNKPFH-----------TVKSLDFFDSNPYKGSIFSEGKEKPVKENLKSFHVNT------------SHLSNSFNAFPKYENDVYDEKLKRNLPYIKNVMNDSKRTFGAIPGPKTMRTFSILNKNIERSINAQNYGTV 936
            + A   K D+E+ GLF E  Y +  D Y +  N  FN S++K +QI+   +K  S L  GYF  +F+R FEGE+Y +P ++RR    +   K   K F   +  K P GLGSYYGT  GP+P    ++    K  E   +N YTN  KKGTGYGY  +T  K   + S+ Y   K + +KEN+    H            + + ++FD+NPY     SE    P+K+  K   V                 + +F+ +P +  D Y  KL       K+  + S + F    GPK+    SI+  N++R++N +NY T 
Sbjct:    1 MPAEGGKTDMERIGLFSEMEYITVGDKYVSQFNRPFNESASKNRQILPGGSKEMSNLQAGYFDPHFVRIFEGESYVNPNQVRRRYMMEEAKKNLSKAFLPSNGEKKPCGLGSYYGTIGGPVPFFSAQSKPKEKY-EPPGKNLYTNPGKKGTGYGYANITIGKQFSHSSDLYDAAKLNNKKENEE---HRRLLKGTAFKLNLYTREYFDTNPY----MSEKPLPPIKKVEKKETVGNPFKPSSPGKKAGGMKAGTFDPYPSHSADPYVVKL-------KSPSSKSAKVFHPPGGPKSRPIESIMALNVKRALNMKNYKTA 304

[Close]

BLAST of UPF0602 protein C4orf47-like vs. UniProt/SwissProt
Match: sp|A7E2U8|CD047_HUMAN (UPF0602 protein C4orf47 OS=Homo sapiens OX=9606 GN=C4orf47 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 6.371e-33
Identity = 101/315 (32.06%), Postives = 152/315 (48.25%), Query Frame = 1

Query:   58 LMASDKKNDLEKFGLFQEFPYQS--DLYKTPGNFEFNASSAKGKQIVIESNKTKSALNHGYFS-NFLRTFEGEAYSDPIKIRRELNRQNKDKLAGKVFHLPSIPKNPEGLGSYYGTFSGPIPAMLGETIQFSKSDEIKKRNFYTNCSKKGTGYGYVGLTFNKYPEYKSEPYGILKSSEEKENQ-------NKPFH-TVKSLDFFDSNPYKGSIFSEGKEKPVKENLKSFHVNTS------------HLSNSFNAFPKYENDVYDEKLKRNLPYIKNVMNDSKRTFGAIPGPKTMRTFSILNKNIERSINAQNYGT 933
            + A   K D+E+ GLF E  Y +  D Y +  N  FN +++K KQ++   +K  S L  GYF  +F+R FEGE Y +  ++RR    +   K  GK F   +  K P GLGSYYGT  GP+P    ++    K  +   +N YTN  KKGTGYGY  +T  K   + ++ Y   K   +K N+         PF   +   D+FD+NPY    FSE    P+K+  K   ++ +              + +F+ +P +  D Y  KL        N+     + F    GPK+    SI+  N+ R++N++NY T
Sbjct:    1 MPAEGGKTDMERIGLFSEMEYITVGDKYVSQFNRPFNEAASKNKQMLPGGSKEMSDLQAGYFDPHFVRIFEGEGYINLNQVRRRDMVEAAKKNLGKAFLPSNGEKKPCGLGSYYGTIGGPVPFFSAQSKPREKY-KAPGKNLYTNPGKKGTGYGYANITIGKQFSHSADFYDAAKLKYKKANEEHHRLLKGAPFKLNLHPRDYFDANPY----FSEESLPPIKKEEKKKTISNTFKPSSPGKKPGGMKAGTFDPYPSHSADPYVAKL-------ANISGKDDKIFHPPSGPKSRPVESIMTLNVRRALNSKNYKT 303

[Close]

BLAST of UPF0602 protein C4orf47-like vs. TrEMBL
Match: A0A267FK75 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig016035g1 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.531e-55
Identity = 119/309 (38.51%), Postives = 175/309 (56.63%), Query Frame = 1

Query:   76 KNDLEKFGLFQEFPYQS--DLYKTPGNFEFNASSAKGKQIVIESNKTKSALNHGYFSNFLRTFEGEAYSDPIKIRRELNRQNKDKLAGKVFHLPSIPKNPEGLGSYYGTFSGPIPAMLGETIQFSKSDEIKKRNFYTNCSKKGTGYGYVGLTFNKYPEYKSEPYGILKSSEEKENQNKPFH---------TVKSLDFFDSNPYKGS---IFSEGKEKPVKENLKSFHV---NTSHLSNSFNAFPKYENDVYDEKLKRNLPYIKNVMNDSKRTFGAIPGPKTMRTFSILNKNIERSINAQNYGTVGSVFS 951
            K+D+++ G+F+E  Y +  D YK PGNF+FN S+ KG+Q++    K KS L+ GY S F R FEGE YSDPIK RR+  ++   +   + ++  S PK   G GS+YGTFSGP+      +    K+   + +N  TN  KKGTGYGY  +T NKYP+YKS+ Y   K  +++EN+              +    DFFD+NPYKG      SE K +P+    K  +    +    + +F++FP Y ++ Y    K++L     V+N S +TF    GPKT    S+L++N+ RS+N+ NY +V SV S
Sbjct:    4 KSDMDRIGIFKEMSYHTVGDPYKNPGNFQFNTSAYKGRQMLPGGTKKKSGLSQGYMSEFGRVFEGEGYSDPIKTRRQERQKASSRNLSRSWNPTSFPKVGSGTGSHYGTFSGPVQYFNAFSSSKGKA-APEGKNILTNPPKKGTGYGYAFVTLNKYPDYKSDTYEKYKDIQKRENEQHKQKVAGKGAFKLSTHPADFFDANPYKGGSALTKSEAKAEPIARPFKPSNPGKKDGGMKAGTFDSFPTYSSEKYQ---KKSLTRPVQVVNSSGKTFVPNSGPKTTLQTSVLHQNVTRSVNSSNYKSVQSVMS 308

[Close]

BLAST of UPF0602 protein C4orf47-like vs. TrEMBL
Match: A0A1S3HMA8 (UPF0602 protein C4orf47 homolog isoform X1 OS=Lingula unguis OX=7574 GN=LOC106156065 PE=4 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 3.013e-49
Identity = 117/313 (37.38%), Postives = 170/313 (54.31%), Query Frame = 1

Query:   76 KNDLEKFGLFQEFPYQS--DLYKTPGNFEFNASSAKGKQIVIESNKTKSALNHGYF-SNFLRTFEGEAYSDPIKIRRELNRQNKDKLAGKVFHLPSIPKNPEGLGSYYGTFSGPIPAMLGETIQFSKSDEIKKRNFYTNCSKKGTGYGYVGLTFNKYPEYKSEPYGILKSSEEKENQ-------NKPFH-TVKSLDFFDSNPYKGSIFSEGKEKPVKE------NLKSFHVNT------SHLSNSFNAFPKYENDVYDEKLKRNLPYIKNVMNDSKRTFGAIPGPKTMRTFSILNKNIERSINAQNYGTVGSV 945
            K D+E+ G+FQE  Y +  D Y+ PG  +FN S++KGKQ++   +K +SAL HGYF   F R FE EAY+DPIKIRR+   +   K  GK F   S  K P GLG++YGTF+GP+ A      +  +  +   RNF TN +KKGTGYGY+ +T +KYPEYK   Y   K   ++EN+          F   +    +FD NP+     S+    P K+      ++K F  +          + +F+ +P +  D Y  K KR +    +V+N + + F    GPKT    SIL++N+ + +N+ NY TV SV
Sbjct:    7 KTDMERIGVFQEMSYATIGDRYRRPGEIQFNVSASKGKQMLPGGSKERSALQHGYFHEKFNRVFESEAYTDPIKIRRQRRVKEMQKNIGKQFIPSSGEKMPSGLGNHYGTFAGPVSA-FSPVAKARQGYKAPGRNFTTNPAKKGTGYGYLSVTISKYPEYKGNEYDKTKEISKRENEAHRKALKGGAFRLNMHPKAYFDGNPF----MSDRPLPPAKKGVSKPPDVKPFRPSNPPKKAGGSKAGTFDPYPSHSQDPYGIKYKRPV----HVVNKTGKIFVPSTGPKTAPISSILDQNVTKVVNSMNYRTVRSV 310

[Close]

BLAST of UPF0602 protein C4orf47-like vs. TrEMBL
Match: S4R9V4 (Zgc:153146 OS=Petromyzon marinus OX=7757 PE=4 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 1.046e-48
Identity = 115/300 (38.33%), Postives = 149/300 (49.67%), Query Frame = 1

Query:   61 MASDKKNDLEKFGLFQEFPYQS--DLYKTPGNFEFNASSAKGKQIVIESNKTKSALNHGYFSN-FLRTFEGEAYSDPIKIRRELNRQNKDKLAGKVFHLPSIPKNPEGLGSYYGTFSGPIPAMLGETIQFSKSD-EIKKRNFYTNCSKKGTGYGYVGLTFNKYPEYKSEPYGILKSSEEKENQN-------KPFHT-VKSLDFFDSNPYKGSIFSEGKEKP--VKENLKSFHVNT------SHLSNSFNAFPKYENDVYDEKLKRNLPYIKNVMNDSKRTFGAIPGPKTMRTFSILNKNI 900
            M SD K D+E+ GLF E  Y S  D YK+  N  FNA++ +G+Q++ E  K++SAL  GYFS  F R  +GEAYSDPIKIRR+   Q   K  GK     S PK P GLGSYYGT  GPIPA+     Q  K       RNF TN  KKGTGYGY  +     P Y  +PY   K    KE +         PF   +  LD FD NPY+    +     P   K + K+F  ++         + +F+++P +  D Y  K    L    +        F   PGPK+    SI++ NI
Sbjct:    1 MPSDGKTDMERVGLFSELGYISIGDKYKSSFNKAFNAAANRGRQMLTEGPKSRSALPAGYFSQGFTRVMQGEAYSDPIKIRRQRRLQEAKKNLGKALLPSSCPKKPSGLGSYYGTLGGPIPAL--SPAQLPKKPYSAPGRNFVTNPPKKGTGYGYPQVMIGSLPPYMPDPYDRAKEIRRKEMETHKKMVKGAPFRLNLHPLDIFDVNPYRSDQPARATHPPRATKSSEKAFKPSSPAKKMGGMKAGTFDSYPSHSEDAYIVKRASALAGGSSGNKGGGHVFRPSPGPKSTPVRSIIDANI 298

[Close]

BLAST of UPF0602 protein C4orf47-like vs. TrEMBL
Match: A0A210QGT9 (UPF0602 protein C4orf47-like OS=Mizuhopecten yessoensis OX=6573 GN=KP79_PYT05429 PE=4 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 1.151e-48
Identity = 119/315 (37.78%), Postives = 175/315 (55.56%), Query Frame = 1

Query:   76 KNDLEKFGLFQEFPYQS--DLYKTPGNFEFNASSAKGKQIVIESNKTKSALNHGYF-SNFLRTFEGEAYSDPIKIRRELNRQNKDKLAGKVFHLPSIPKNPEGLGSYYGTFSGPIPAMLGETIQFSKSDEIKKRNFYTNCSKKGTGYGYVGLTFNKYPEYKSEPYGILKSSEEKENQNKPFHTVKSLDF---------FDSNPYKGSIF------SEGKEKPVKENLKSFHVNT------SHLSNSFNAFPKYENDVYDEKLKRNLPYIKNVMNDSKRTFGAIPGPKTMRTFSILNKNIERSINAQNYGTVGSVF 948
            KND+++ G+FQE  Y +  D YK PG  +FNA+++KGKQI+   +KT+SAL  GYF   + R  EGEAYSDPIK+RR+   +   +  GK F   S  K P GLGS+YGT +GPI A      +  K  +   +NF TN  KKGTG+G+V +T   YP+Y+++ Y   +   +KE  N   + VK   F         FD NPY           S G  K  KE++K F  ++         + +F+ +P +  D Y  K+  ++    NV+N + +TF    GPK++ T SI+N+NI ++IN QNY ++ S+ 
Sbjct:    7 KNDMDRIGVFQEMGYVTIGDRYKPPG-IQFNAAASKGKQILPGGSKTRSALQSGYFLEKYGRVMEGEAYSDPIKMRRQHRLKESQRNIGKAFLPSSGEKKPSGLGSHYGTLAGPISA-FSPNARPGKGYKSPGKNFLTNPGKKGTGFGFVEITLGSYPKYQADAYERARELTKKELANHK-NAVKGAAFKLNMHPKPYFDQNPYASDKLLGRRSVSAGVSK--KEDVKPFKPSSPGKKPAGMKAGTFDPYPSHSADPYKIKVSHSV----NVVNKTGKTFMPSQGPKSVPTNSIVNQNILKTINVQNYRSMTSII 312

[Close]

BLAST of UPF0602 protein C4orf47-like vs. TrEMBL
Match: A0A1S3HKS1 (UPF0602 protein C4orf47 homolog isoform X2 OS=Lingula unguis OX=7574 GN=LOC106156065 PE=4 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 8.700e-48
Identity = 114/313 (36.42%), Postives = 167/313 (53.35%), Query Frame = 1

Query:   76 KNDLEKFGLFQEFPYQS--DLYKTPGNFEFNASSAKGKQIVIESNKTKSALNHGYF-SNFLRTFEGEAYSDPIKIRRELNRQNKDKLAGKVFHLPSIPKNPEGLGSYYGTFSGPIPAMLGETIQFSKSDEIKKRNFYTNCSKKGTGYGYVGLTFNKYPEYKSEPY--GILKSSEEKENQNKPFH------TVKSLDFFDSNPYKGSIFSEGKEKPVKE------NLKSFHVNT------SHLSNSFNAFPKYENDVYDEKLKRNLPYIKNVMNDSKRTFGAIPGPKTMRTFSILNKNIERSINAQNYGTVGSV 945
            K D+E+ G+FQE  Y +  D Y+ PG  +FN S++KGKQ++   +K +SAL HGYF   F R FE EAY+DPIKIRR+   +   K  GK F   S  K P GLG++YGTF+GP+ A      +  +  +   RNF TN +KKGTGYG++ +T   YP+Y +E Y  G +    E E   K          +    +FD NP+     S+    P K+      ++K F  +          + +F+ +P +  D Y  K KR +    +V+N + + F    GPKT    SIL++N+ + +N+ NY TV SV
Sbjct:    7 KTDMERIGVFQEMSYATIGDRYRRPGEIQFNVSASKGKQMLPGGSKERSALQHGYFHEKFNRVFESEAYTDPIKIRRQRRVKEMQKNIGKQFIPSSGEKMPSGLGNHYGTFAGPVSA-FSPVAKARQGYKAPGRNFTTNPAKKGTGYGFISVTIGDYPKYSTEQYEKGKILQKRENEAHRKALKGGAFRLNMHPKAYFDGNPF----MSDRPLPPAKKGVSKPPDVKPFRPSNPPKKAGGSKAGTFDPYPSHSQDPYGIKYKRPV----HVVNKTGKIFVPSTGPKTAPISSILDQNVTKVVNSMNYRTVRSV 310

[Close]

BLAST of UPF0602 protein C4orf47-like vs. Ensembl Cavefish
Match: zgc:153146 (chromosome 24 C4orf47 homolog [Source:NCBI gene;Acc:103030756])

HSP 1 Score: 120.939 bits (302), Expect = 1.854e-31
Identity = 105/322 (32.61%), Postives = 161/322 (50.00%), Query Frame = 1

Query:   61 MASDKKNDLEKFGLFQEFPYQS--DLYKTPGNFE-FNASSAKGKQIVIESNKTKSALNHGYF-SNFLRTFEGEAYSDPIKIRRELNRQNKDKLAGKVFHLPSIPKNPEGLGSYYGTFSGPIPAMLGETIQFSKSD-EIKKRNFYTNCSKKGTGYGYVGLTFNKYPEYKSEPYGILKSSEEKE-------NQNKPFHT-VKSLDFFDSNPYK------GSIFSEGKEK----PVKENLKSFHVNTSHLSNSFNAFPKYENDVYDEKLKRNLPYIKNV--MNDSKRTFGAIPGPKTMRTFSILNKNIERSINAQNYGTVGSVFS 951
            M  + K+D+E+ GLF+E  Y S  D Y TP  +  FN S+ K KQ+++  +K KS L  GYF + F R FE EA +D IKI+R+   +   +  GK F   S  K   G+GSYYGT  G I AM    ++  K   +   +N YT+  KKG+GYGY G+T  K   Y S+PY   K   ++E        +  PF   +   + FD+NPYK       S  +E K+     P K +  S  +     + +F+ +P +  D Y       +P+      +N   + F   PGPK+    SI++ N+ + +N++N   + S+ +
Sbjct:    1 MPPEGKSDMERVGLFKEMGYISIGDKY-TPFLYRAFNESAHKNKQMLVGGSKKKSGLQTGYFDAQFKRIFEKEALTDLIKIQRQYKLEQTKRNLGKAFLPSSGEKKRSGIGSYYGTLGGSIQAM--SPLKIPKQPYKSPGKNMYTSPPKKGSGYGYPGVTLGKLDLYSSDPYDRAKDIVKRELIAHKSMLKGGPFRLNLHPKECFDANPYKPDKPLPPSKKTEDKKTHFGVPFKPSSPSKKIGGMK-AGTFDLYPTHSVDPY-------IPHKPKTAGLNKELKIFHPSPGPKSTPVKSIISLNVNKFVNSKNCNQIPSIMA 311

[Close]

BLAST of UPF0602 protein C4orf47-like vs. Ensembl Sea Lamprey
Match: zgc:153146 (pep scaffold:Pmarinus_7.0:GL477013:54605:76454:-1 gene:ENSPMAG00000001809.1 transcript:ENSPMAT00000001995.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:zgc:153146)

HSP 1 Score: 175.252 bits (443), Expect = 8.034e-53
Identity = 115/300 (38.33%), Postives = 149/300 (49.67%), Query Frame = 1

Query:   61 MASDKKNDLEKFGLFQEFPYQS--DLYKTPGNFEFNASSAKGKQIVIESNKTKSALNHGYFSN-FLRTFEGEAYSDPIKIRRELNRQNKDKLAGKVFHLPSIPKNPEGLGSYYGTFSGPIPAMLGETIQFSKSD-EIKKRNFYTNCSKKGTGYGYVGLTFNKYPEYKSEPYGILKSSEEKENQN-------KPFHT-VKSLDFFDSNPYKGSIFSEGKEKP--VKENLKSFHVNT------SHLSNSFNAFPKYENDVYDEKLKRNLPYIKNVMNDSKRTFGAIPGPKTMRTFSILNKNI 900
            M SD K D+E+ GLF E  Y S  D YK+  N  FNA++ +G+Q++ E  K++SAL  GYFS  F R  +GEAYSDPIKIRR+   Q   K  GK     S PK P GLGSYYGT  GPIPA+     Q  K       RNF TN  KKGTGYGY  +     P Y  +PY   K    KE +         PF   +  LD FD NPY+    +     P   K + K+F  ++         + +F+++P +  D Y  K    L    +        F   PGPK+    SI++ NI
Sbjct:    1 MPSDGKTDMERVGLFSELGYISIGDKYKSSFNKAFNAAANRGRQMLTEGPKSRSALPAGYFSQGFTRVMQGEAYSDPIKIRRQRRLQEAKKNLGKALLPSSCPKKPSGLGSYYGTLGGPIPAL--SPAQLPKKPYSAPGRNFVTNPPKKGTGYGYPQVMIGSLPPYMPDPYDRAKEIRRKEMETHKKMVKGAPFRLNLHPLDIFDVNPYRSDQPARATHPPRATKSSEKAFKPSSPAKKMGGMKAGTFDSYPSHSEDAYIVKRASALAGGSSGNKGGGHVFRPSPGPKSTPVRSIIDANI 298

[Close]

BLAST of UPF0602 protein C4orf47-like vs. Ensembl Nematostella
Match: EDO34007 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SQL2])

HSP 1 Score: 135.191 bits (339), Expect = 2.722e-37
Identity = 110/314 (35.03%), Postives = 157/314 (50.00%), Query Frame = 1

Query:   61 MASDKKNDLEKFGLFQEFPYQS--DLYKTPGNFEFNASSAKGKQIVIESNKTKSALNHGYFSN-FLRTFEGEAYSDPIKIRRELNRQNKDKL-AGKVFHLPSIPKNPEGLGSYYGTFSGPIPAMLGETIQFSKSDEIKK-RNFYTNCSKKGTGYGYVGLTFNKYPEYKSEPYGILKSSEEKENQNKPFHT--------VKSLDFFDSNPYKGSIFSEGKEKPVKENLKS----FHVNTSHL--------SNSFNAFPKYENDVYDEKLKRNLPYIKNVMNDSKRTFGAIPGPKTMRTFSILNKNIERSINAQNY 927
            + +D KNDL + GLF E  Y S  D YK   N  FN ++ KGKQ++   +K +S+   GYF   F R  EGEA+SDP+K RR L+R    KL  GK F   +  K P G+G++YGTF+G +PA     +  SKS  +   +NF TN  KKGTGYGY+ +T    P+Y S+ Y   K   +KE                +    +FD NPYK    S+    PVK+  K+         SH         +  F ++P +  D +  K K+N        +  ++ F    GPK+    SI+N+N++R IN  N+
Sbjct:    4 VMNDVKNDLNRVGLFSELGYISIGDPYKI-QNGNFNLAAHKGKQMLPGGSKIRSSKQDGYFDQKFNRVMEGEAFSDPVK-RRRLDRLKATKLNIGKAFVPSNGDKLPSGIGNHYGTFAGAVPAF--SPVTKSKSAHVSPGKNFLTNPPKKGTGYGYLQVTIGASPKYMSDAYDRGKELRKKEMDTSGKQMKGGAFKLNLHPKSYFDGNPYK----SDRPLPPVKDGRKAKPDFKPFKPSHPPKEIGGMKAGCFTSYPSHSEDPFQPKKKKN-------GDGERKIFRPSQGPKSTPMKSIINQNVDRRINRLNF 302

[Close]

BLAST of UPF0602 protein C4orf47-like vs. Planmine SMEST
Match: SMESG000033217.1 (SMESG000033217.1)

HSP 1 Score: 597.045 bits (1538), Expect = 0.000e+0
Identity = 296/298 (99.33%), Postives = 297/298 (99.66%), Query Frame = 1

Query:   61 MASDKKNDLEKFGLFQEFPYQSDLYKTPGNFEFNASSAKGKQIVIESNKTKSALNHGYFSNFLRTFEGEAYSDPIKIRRELNRQNKDKLAGKVFHLPSIPKNPEGLGSYYGTFSGPIPAMLGETIQFSKSDEIKKRNFYTNCSKKGTGYGYVGLTFNKYPEYKSEPYGILKSSEEKENQNKPFHTVKSLDFFDSNPYKGSIFSEGKEKPVKENLKSFHVNTSHLSNSFNAFPKYENDVYDEKLKRNLPYIKNVMNDSKRTFGAIPGPKTMRTFSILNKNIERSINAQNYGTVGSVFSL 954
            MASDKKNDLEKFGLFQEFPYQSDLYKTPGNFEFNASSAKGKQIVIESNKTKSALNHGYFSNFLRTFEGEAYSDPIKIRRELNR NK+KLAGKVFHLPSIPKNPEGLGSYYGTFSGPIPAMLGETIQFSKSDEIKKRNFYTNCSKKGTGYGYVGLTFNKYPEYKSEPYGILKSSEEKENQNKPFHTVKSLDFFDSNPYKGSIFSEGKEKPVKENLKSFHVNTSHLSNSFNAFPKYENDVYDEKLKRNLPYIKNVMNDSKRTFGAIPGPKTMRTFSILNKNIERSINAQNYGTVGSVFSL
Sbjct:    1 MASDKKNDLEKFGLFQEFPYQSDLYKTPGNFEFNASSAKGKQIVIESNKTKSALNHGYFSNFLRTFEGEAYSDPIKIRRELNRPNKEKLAGKVFHLPSIPKNPEGLGSYYGTFSGPIPAMLGETIQFSKSDEIKKRNFYTNCSKKGTGYGYVGLTFNKYPEYKSEPYGILKSSEEKENQNKPFHTVKSLDFFDSNPYKGSIFSEGKEKPVKENLKSFHVNTSHLSNSFNAFPKYENDVYDEKLKRNLPYIKNVMNDSKRTFGAIPGPKTMRTFSILNKNIERSINAQNYGTVGSVFSL 298

[Close]

BLAST of UPF0602 protein C4orf47-like vs. Planmine SMEST
Match: SMESG000078789.1 (SMESG000078789.1)

HSP 1 Score: 179.489 bits (454), Expect = 6.652e-54
Identity = 121/312 (38.78%), Postives = 173/312 (55.45%), Query Frame = 1

Query:   76 KNDLEKFGLFQEFPYQS--DLYKTPGNFEFNASSAKGKQIVIESNKTKSALNHGYFSNFLRTFEGEAYSDPIKIRRELNRQNKDKLAGKVFHLPSIPKNPEGLGSYYGTFSGPIPAMLGETI-QFSKSDEIKKRNFYTNCSKKGTGYGYVGLTFNKYPEYKSEPYGILK--SSEEKENQNKPFHT-------VKSLDFFDSNPYKG--SIFSEGKEKPVKENLKSF------HVNTSHLSNSFNAFPKYENDVYDEKL-KRNLPYIKNVMNDSKRTFGAIPGPKTMRTFSILNKNIERSINAQNYGTVGSVF 948
            K D+E+ GLF+E  Y +  D YK+    +FN S++KGKQ++    K+KSA N GYF  F R F+GE+YSDPIK+ R+   ++  K  GK +   +  K   G G+YYGTFSG IP    E I +  ++  I+ +NFYTN +KKG GYG+VG+T NKYPEY+SE Y   K  + +E E      H+       +   D+FD NPY G    +         +N K+F       ++    +  F +FP+Y ++ Y  K+ KR +    NV+N S RTF    GPK+    S+L +NI R+I   NY  + SV 
Sbjct:    4 KTDMERVGLFKELGYHTIGDPYKSSALQQFNQSASKGKQVLPGGEKSKSASNVGYFQEFTRIFDGESYSDPIKLMRKRRNESSKKKLGKNWVPVNGIKESCGSGTYYGTFSGAIPHF--EAISKEQRAKGIQGKNFYTNPAKKGVGYGFVGVTLNKYPEYQSEKYDRSKDITKQENEEHKSKLHSRGVFRLGMHLRDYFDMNPYSGPSEKYRVTSVNSKSQNFKTFKPSSPSKLDGGMKAGCFGSFPEYSSETYKAKIPKRPV----NVVNSSGRTFIPPIGPKSRPVNSVLQQNIIRTITPANYRQIQSVM 309

[Close]

BLAST of UPF0602 protein C4orf47-like vs. Planmine SMEST
Match: SMESG000042363.1 (SMESG000042363.1)

HSP 1 Score: 112.464 bits (280), Expect = 1.914e-28
Identity = 95/315 (30.16%), Postives = 152/315 (48.25%), Query Frame = 1

Query:   73 KKNDLEKFGLFQEFPYQS--DLYKTPGNFEFNASSAKGKQIVIESNKTKSALNHGYFSN-FLRTFEGEAYSDPIKIRRELNRQNKDKLAGKVFHLPSIPKNPEGLGSYYGTFSGPIPAMLGETIQFSKSDEIKKRNFYTNCSKKGTGYGYVGLTFNKYPEYKSEPYGILKS----SEEKENQNKPFHTVKSL------DFFDSNPYKGSI--FSEGKEKPVKENLKSFHVNTSH-------LSNSFNAFPKYENDVYDEKLKRNLPYIKNVMNDSKRTFGAIPGPKTMRTFSILNKNIERSINAQNYGTVGSVFS 951
            +K D+E+ GLF+E  Y +  D YK P  +       KGK  + +  ++K+A + GYF+  F R FEGE+ ++ + +RR    QNK+K  GK F + +  K   G GS  G     IP   G T +  +     K+NF TN  KKG+GYGY  +  N YPE+KS+ Y   ++     E  E+Q +  +  + +       +F SNPY+G +  + E   K V    K   +  S+              +P      Y +K  RNL  + +V N++ + +   PG K+    S+L KN+   +N  N  ++ +V +
Sbjct:    3 EKTDMERVGLFKEMGYHTINDPYK-PFFYSSRQDIIKGKGFLGDMTRSKAATDDGYFTKPFSRVFEGESETNLMAMRRRWRNQNKEKNVGKTFIMSNPGKKQSGTGSRMGCMDYMIPYFSGIT-RTVRGKLPNKKNFITNPGKKGSGYGYADVCLNPYPEWKSDVYDGARNMYFRKEMAEHQKRTLNRKEFIPTNAYGSYFYSNPYEGGMGPYEEKHGKTVNYLQKRPFIPGSYPKILGGNKDGCLTPYPPAFPAEYKDKFTRNL--VHDVRNNTNKLYNHTPGSKSCIFQSVLQKNVNFRVNNLNSHSIRNVMN 313

The following BLAST results are available for this feature:

BLAST of UPF0602 protein C4orf47-like vs. Ensembl Human
BLAST of UPF0602 protein C4orf47-like vs. Ensembl Celegans
BLAST of UPF0602 protein C4orf47-like vs. Ensembl Fly
BLAST of UPF0602 protein C4orf47-like vs. Ensembl Zebrafish
BLAST of UPF0602 protein C4orf47-like vs. Ensembl Xenopus
BLAST of UPF0602 protein C4orf47-like vs. Ensembl Mouse
BLAST of UPF0602 protein C4orf47-like vs. UniProt/SwissProt
BLAST of UPF0602 protein C4orf47-like vs. TrEMBL
BLAST of UPF0602 protein C4orf47-like vs. Ensembl Cavefish
BLAST of UPF0602 protein C4orf47-like vs. Ensembl Sea Lamprey
BLAST of UPF0602 protein C4orf47-like vs. Ensembl Yeast
BLAST of UPF0602 protein C4orf47-like vs. Ensembl Nematostella
BLAST of UPF0602 protein C4orf47-like vs. Ensembl Medaka
BLAST of UPF0602 protein C4orf47-like vs. Planmine SMEST

BLAST of UPF0602 protein C4orf47-like vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 3


Match Name	E-value	Identity	Description
C4orf47	1.327e-33	32.06	chromosome 4 open reading frame 47 [Source:HGNC Sy...	[more]
C4orf47	3.432e-24	39.51	chromosome 4 open reading frame 47 [Source:HGNC Sy...	[more]
C4orf47	5.310e-24	39.51	chromosome 4 open reading frame 47 [Source:HGNC Sy...	[more]

BLAST of UPF0602 protein C4orf47-like vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of UPF0602 protein C4orf47-like vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of UPF0602 protein C4orf47-like vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 3


Match Name	E-value	Identity	Description
C14H4orf47	2.687e-40	33.54	zgc:153146 [Source:NCBI gene;Acc:751702]	[more]
C14H4orf47	2.687e-40	33.54	zgc:153146 [Source:NCBI gene;Acc:751702]	[more]
zgc:153146	3.460e-40	33.54	zgc:153146 [Source:NCBI gene;Acc:751702]	[more]

BLAST of UPF0602 protein C4orf47-like vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 1


Match Name	E-value	Identity	Description
C4orf47	3.493e-38	36.16	chromosome 4 open reading frame 47 [Source:NCBI ge...	[more]

BLAST of UPF0602 protein C4orf47-like vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 3


Match Name	E-value	Identity	Description
1700029J07Rik	1.269e-37	32.91	RIKEN cDNA 1700029J07 gene [Source:MGI Symbol;Acc:...	[more]
1700029J07Rik	1.269e-37	32.91	RIKEN cDNA 1700029J07 gene [Source:MGI Symbol;Acc:...	[more]
1700029J07Rik	2.400e-11	39.60	RIKEN cDNA 1700029J07 gene [Source:MGI Symbol;Acc:...	[more]

BLAST of UPF0602 protein C4orf47-like vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5


Match Name	E-value	Identity	Description
sp\|Q0P4C5\|CD047_DANRE	1.265e-37	32.92	UPF0602 protein C4orf47 homolog OS=Danio rerio OX=...	[more]
sp\|Q3U1D9\|CD047_MOUSE	8.877e-37	32.91	UPF0602 protein C4orf47 homolog OS=Mus musculus OX...	[more]
sp\|Q5XHC1\|CD047_XENLA	2.393e-36	34.84	UPF0602 protein C4orf47 homolog OS=Xenopus laevis ...	[more]
sp\|Q2T9M0\|CD047_BOVIN	5.866e-34	32.60	UPF0602 protein C4orf47 homolog OS=Bos taurus OX=9...	[more]
sp\|A7E2U8\|CD047_HUMAN	6.371e-33	32.06	UPF0602 protein C4orf47 OS=Homo sapiens OX=9606 GN...	[more]

BLAST of UPF0602 protein C4orf47-like vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A267FK75	2.531e-55	38.51	Uncharacterized protein OS=Macrostomum lignano OX=...	[more]
A0A1S3HMA8	3.013e-49	37.38	UPF0602 protein C4orf47 homolog isoform X1 OS=Ling...	[more]
S4R9V4	1.046e-48	38.33	Zgc:153146 OS=Petromyzon marinus OX=7757 PE=4 SV=1	[more]
A0A210QGT9	1.151e-48	37.78	UPF0602 protein C4orf47-like OS=Mizuhopecten yesso...	[more]
A0A1S3HKS1	8.700e-48	36.42	UPF0602 protein C4orf47 homolog isoform X2 OS=Ling...	[more]

BLAST of UPF0602 protein C4orf47-like vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 1


Match Name	E-value	Identity	Description
zgc:153146	1.854e-31	32.61	chromosome 24 C4orf47 homolog [Source:NCBI gene;Ac...	[more]

BLAST of UPF0602 protein C4orf47-like vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 1


Match Name	E-value	Identity	Description
zgc:153146	8.034e-53	38.33	pep scaffold:Pmarinus_7.0:GL477013:54605:76454:-1 ...	[more]

BLAST of UPF0602 protein C4orf47-like vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of UPF0602 protein C4orf47-like vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 1


Match Name	E-value	Identity	Description
EDO34007	2.722e-37	35.03	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]

BLAST of UPF0602 protein C4orf47-like vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of UPF0602 protein C4orf47-like vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 3


Match Name	E-value	Identity	Description
SMESG000033217.1	0.000e+0	99.33	SMESG000033217.1	[more]
SMESG000078789.1	6.652e-54	38.78	SMESG000078789.1	[more]
SMESG000042363.1	1.914e-28	30.16	SMESG000042363.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediteranean smed_20140614 Interproscan	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Sequences

The following sequences are available for this feature:

transcript sequence
protein sequence

transcript sequence

>SMED30011676 ID=SMED30011676|Name=UPF0602 protein C4orf47-like|organism=Schmidtea mediterranea sexual|type=transcript|length=1004bp
GTGTTACTTGGCTACTACAATCATGGCTAAATGAATTCATAAATCTGTAT
CATTTACTTAATGGCTAGTGACAAAAAAAATGATTTAGAGAAGTTTGGAT
TATTTCAAGAATTTCCTTATCAAAGTGATTTGTATAAAACTCCAGGTAAT
TTTGAATTTAACGCATCTTCAGCTAAGGGAAAGCAAATTGTTATCGAGTC
AAATAAAACAAAATCTGCTTTGAATCATGGATATTTTTCAAATTTTCTAC
GAACGTTTGAAGGTGAAGCTTATTCTGATCCTATTAAAATTCGAAGAGAA
TTGAATAGACAGAATAAAGATAAGCTTGCAGGCAAAGTTTTTCACCTCCC
TAGTATTCCTAAAAACCCCGAGGGATTAGGAAGTTATTATGGAACTTTTT
CTGGACCTATTCCAGCGATGTTAGGGGAAACAATACAATTCTCAAAATCT
GATGAGATTAAAAAAAGAAACTTTTACACAAATTGTTCAAAGAAGGGTAC
TGGCTATGGATATGTTGGACTTACTTTTAATAAATATCCTGAATATAAAA
GTGAACCTTATGGCATATTGAAATCAAGTGAAGAGAAAGAAAATCAAAAT
AAACCTTTCCACACTGTTAAATCTTTGGATTTTTTTGATTCTAATCCTTA
TAAAGGATCTATATTTTCGGAAGGTAAAGAAAAACCAGTAAAAGAGAATT
TAAAGTCATTTCATGTCAACACGTCTCACTTATCAAATTCATTCAATGCA
TTTCCAAAATATGAAAATGATGTTTACGATGAAAAATTAAAAAGAAATTT
ACCCTATATTAAAAATGTAATGAATGATAGCAAGAGAACATTTGGAGCTA
TTCCAGGTCCTAAAACAATGAGAACATTTTCAATATTAAACAAAAACATC
GAAAGATCTATAAATGCACAGAATTATGGAACAGTTGGATCTGTGTTTTC
ATTATAAAAATAAAATATGAATTGTCAATATGAAATGAATGCCATGTGAA
TTAC

protein sequence of SMED30011676-orf-1

>SMED30011676-orf-1 ID=SMED30011676-orf-1|Name=SMED30011676-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=299bp
MASDKKNDLEKFGLFQEFPYQSDLYKTPGNFEFNASSAKGKQIVIESNKT
KSALNHGYFSNFLRTFEGEAYSDPIKIRRELNRQNKDKLAGKVFHLPSIP
KNPEGLGSYYGTFSGPIPAMLGETIQFSKSDEIKKRNFYTNCSKKGTGYG
YVGLTFNKYPEYKSEPYGILKSSEEKENQNKPFHTVKSLDFFDSNPYKGS
IFSEGKEKPVKENLKSFHVNTSHLSNSFNAFPKYENDVYDEKLKRNLPYI
KNVMNDSKRTFGAIPGPKTMRTFSILNKNIERSINAQNYGTVGSVFSL*

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **Planarian Anatomy**
Term	Definition
PLANA:0000034	epidermis
PLANA:0000099	neuron
PLANA:0000418	head

Vocabulary: **INTERPRO**
Term	Definition
IPR029358	DUF4586
IPR013809	ENTH

Vocabulary: **cellular component**
Term	Definition
GO:0005737	cytoplasm
GO:0005813	centrosome
GO:0005815	microtubule organizing center
GO:0005856	cytoskeleton

InterPro

Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029358	Protein of unknown function DUF4586	PFAM	PF15239	DUF4586	coord: 8..280 e-value: 1.2E-52 score: 180.0
IPR029358	Protein of unknown function DUF4586	PANTHER	PTHR31144	FAMILY NOT NAMED	coord: 4..288

Main menu

UPF0602 protein C4orf47-like

Zeng et. al., 2018

▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Davies et. al., 2017

PAGE et. al., 2020

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 8

Owlery

blazegraph-runner